BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645948|ref|NP_208127.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(360 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208127.1| (NC_000915) conserved hypothetical protein... 719 0.0
ref|NP_223972.1| (NC_000921) putative TRNA (5-METHYLAMINOME... 700 0.0
ref|NP_281268.1| (NC_002163) tRNA (5-methylaminomethyl-2-th... 314 9e-85
ref|NP_274563.1| (NC_003112) tRNA (5-methylaminomethyl-2-th... 219 4e-56
ref|NP_284459.1| (NC_003116) tRNA (5-methylaminomethyl-2-th... 219 5e-56
sp|Q9JTJ9|TRMU_NEIMA Probable tRNA (5-methylaminomethyl-2-t... 219 5e-56
ref|NP_470883.1| (NC_003212) similar to putative tRNA (5-me... 214 1e-54
ref|NP_242127.1| (NC_002570) (5-methylaminomethyl-2-thiouri... 214 2e-54
ref|NP_465037.1| (NC_003210) similar to putative tRNA (5-me... 213 3e-54
ref|NP_441127.1| (NC_000911) hypothetical protein [Synechoc... 209 3e-53
ref|NP_213838.1| (NC_000918) hypothetical protein [Aquifex ... 209 5e-53
ref|NP_658425.1| (NC_003995) tRNA_Me_trans, tRNA methyl tra... 206 3e-52
ref|NP_326389.1| (NC_002771) TRNA (5-METHYLAMINOMETHYL-2-TH... 206 4e-52
ref|NP_357716.1| (NC_003098) tRNA (5-methylaminomethyl-2-th... 204 2e-51
ref|NP_622864.1| (NC_003869) predicted tRNA(5-methylaminome... 203 2e-51
ref|NP_562699.1| (NC_003366) probable tRNA (5-methylaminome... 202 4e-51
ref|NP_348850.1| (NC_003030) TRNA 5-methylaminomethyl-2-thi... 202 4e-51
ref|NP_295482.1| (NC_001263) tRNA (5-methylaminomethyl-2-th... 202 5e-51
sp|Q9RTK1|TRMU_DEIRA Probable tRNA (5-methylaminomethyl-2-t... 202 5e-51
ref|NP_344664.1| (NC_003028) tRNA (5-methylaminomethyl-2-th... 202 5e-51
sp|O35020|TRMU_BACSU Probable tRNA (5-methylaminomethyl-2-t... 201 1e-50
ref|NP_374734.1| (NC_002745) (5-methylaminomethyl-2-thiouri... 200 2e-50
ref|NP_372145.1| (NC_002758) 5-methylaminomethyl-2-thiourid... 200 2e-50
ref|NP_603662.1| (NC_003454) tRNA (5-methylaminomethyl-2-th... 200 2e-50
ref|NP_602720.1| (NC_003454) tRNA (5-methylaminomethyl-2-th... 200 2e-50
ref|NP_405219.1| (NC_003143) tRNA (5-methylaminomethyl-2-th... 199 3e-50
sp|P25745|TRMU_ECOLI tRNA (5-methylaminomethyl-2-thiouridyl... 199 3e-50
ref|NP_415651.1| (NC_000913) orf, hypothetical protein [Esc... 199 3e-50
ref|NP_228330.1| (NC_000853) tRNA (5-methylaminomethyl-2-th... 199 3e-50
ref|NP_646388.1| (NC_003923) (5-methylaminomethyl-2-thiouri... 199 4e-50
ref|NP_287347.1| (NC_002655) orf, hypothetical protein [Esc... 199 4e-50
ref|NP_485402.1| (NC_003272) tRNA (5-methylaminomethyl-2-th... 198 7e-50
ref|NP_230773.1| (NC_002505) tRNA (5-methylaminomethyl-2-th... 198 7e-50
ref|NP_246275.1| (NC_002663) unknown [Pasteurella multocida... 198 7e-50
ref|NP_251316.1| (NC_002516) tRNA methyltransferase [Pseudo... 197 1e-49
ref|NP_460204.1| (NC_003197) tRNA (5-methylaminomethyl-2-th... 197 2e-49
ref|NP_455726.1| (NC_003198) tRNA (5-methylaminomethyl-2-th... 196 3e-49
ref|NP_220690.1| (NC_000963) unknown [Rickettsia prowazekii... 196 3e-49
ref|NP_520844.1| (NC_003295) PROBABLE TRNA 5-METHYLAMINOMET... 196 3e-49
ref|NP_270096.1| (NC_002737) putative tRNA-(5-methylaminome... 196 5e-49
ref|NP_608157.1| (NC_003485) tRNA-methyltransferase [Strept... 194 2e-48
ref|NP_623990.1| (NC_003869) predicted tRNA(5-methylaminome... 191 9e-48
ref|NP_266993.1| (NC_002662) tRNA-methyltransferase [Lactoc... 191 1e-47
sp|Q9CHA1|TRMU_LACLA Probable tRNA (5-methylaminomethyl-2-t... 191 1e-47
ref|NP_360047.1| (NC_003103) tRNA (5-methylaminomethyl-2-th... 191 1e-47
ref|NP_104070.1| (NC_002678) tRNA (5-methylaminomethyl-2-th... 190 2e-47
ref|NP_438342.1| (NC_000907) conserved hypothetical protein... 189 4e-47
sp|P44551|TRMU_HAEIN Probable tRNA (5-methylaminomethyl-2-t... 189 4e-47
ref|NP_539345.1| (NC_003317) TRNA (5-METHYLAMINOMETHYL-2-TH... 188 7e-47
ref|NP_600463.1| (NC_003450) COG0482:Predicted tRNA(5-methy... 186 4e-46
ref|NP_419714.1| (NC_002696) tRNA (5-methylaminomethyl-2-th... 184 1e-45
ref|NP_386819.1| (NC_003047) PUTATIVE TRNA 5-METHYLAMINOMET... 184 1e-45
ref|NP_642324.1| (NC_003919) tRNA methyltransferase [Xantho... 182 4e-45
ref|NP_637329.1| (NC_003902) tRNA methyltransferase [Xantho... 181 1e-44
ref|NP_660600.1| (NC_004061) tRNA (5-methylaminomethyl-2-th... 181 2e-44
ref|NP_240085.1| (NC_002528) tRNA (5-methylaminomethyl-2-th... 179 4e-44
sp|P57349|TRMU_BUCAI Probable tRNA (5-methylaminomethyl-2-t... 179 4e-44
ref|NP_298729.1| (NC_002488) tRNA methyltransferase [Xylell... 178 8e-44
ref|NP_356917.1| (NC_003063) AGR_L_2270p [Agrobacterium tum... 177 2e-43
sp|Q9PKA7|TRMU_CHLMU Probable tRNA (5-methylaminomethyl-2-t... 177 2e-43
ref|NP_296936.1| (NC_002620) tRNA (5-methylaminomethyl-2-th... 177 2e-43
ref|NP_662733.1| (NC_002932) tRNA (5-methylaminomethyl-2-th... 177 2e-43
ref|NP_390627.1| (NC_000964) similar to hypothetical protei... 176 3e-43
ref|NP_302176.1| (NC_002677) probable tRNA (5-methylaminome... 176 5e-43
ref|NP_629624.1| (NC_003888) tRNA (5-methylaminomethyl-2-th... 174 1e-42
ref|NP_534197.1| (NC_003305) tRNA (5-methylaminomethyl-2-th... 174 2e-42
ref|NP_219792.1| (NC_000117) PP-loop superfamily ATPase [Ch... 173 2e-42
ref|NP_212816.1| (NC_001318) conserved hypothetical protein... 170 2e-41
ref|NP_224638.1| (NC_000922) PP-loop superfamily ATPase [Ch... 169 3e-41
ref|NP_217540.1| (NC_000962) hypothetical protein Rv3024c [... 168 1e-40
ref|NP_078237.1| (NC_002162) tRNA-(5-methylaminomethyl-2-th... 167 1e-40
ref|NP_072962.1| (NC_000908) conserved hypothetical protein... 159 4e-38
sp|O75648|TRMU_HUMAN tRNA (5-methylaminomethyl-2-thiouridyl... 153 3e-36
ref|NP_175542.1| (NM_104009) unknown protein [Arabidopsis t... 153 3e-36
ref|NP_652639.1| (NM_144382) EG:BACR7A4.8 gene product; Tra... 150 2e-35
ref|XP_128011.1| (XM_128011) expressed sequence AI314320 [M... 150 2e-35
emb|CAB65878.1| (AL109630) /prediction=(method:''genefinder... 150 3e-35
ref|NP_110110.1| (NC_000912) TRNA (5-METHYLAMINOMETHYL-2-TH... 149 5e-35
ref|NP_593402.1| (NC_003424) probable trna methyltransferas... 145 5e-34
gb|EAA00244.1| (AAAB01008986) agCP9399 [Anopheles gambiae s... 145 7e-34
gb|AAF45578.2| (AE003419) EG:BACR7A4.8 gene product [Drosop... 144 1e-33
pir||T18663 hypothetical protein B0035.16 - Caenorhabditis ... 123 4e-27
ref|NP_502120.1| (NM_069719) Haemophilus hypothetical prote... 118 9e-26
ref|NP_010251.1| (NC_001136) Hypothetical ORF; Ydl033cp [Sa... 109 6e-23
ref|NP_060476.1| (NM_018006) hypothetical protein FLJ10140 ... 94 3e-18
pir||S19210 hypothetical protein 15 - Escherichia coli >gi|... 57 3e-07
ref|NP_563126.1| (NC_003366) conserved hypothetical protein... 56 7e-07
ref|NP_603460.1| (NC_003454) tRNA (5-methylaminomethyl-2-th... 56 7e-07
ref|NP_213608.1| (NC_000918) putative protein [Aquifex aeol... 55 1e-06
ref|NP_578002.1| (NC_003413) n-type ATP pyrophosphatase sup... 51 2e-05
ref|NP_621776.1| (NC_003869) predicted ATPase of the PP-loo... 50 4e-05
ref|NP_561906.1| (NC_003366) conserved hypothetical protein... 49 1e-04
ref|NP_142287.1| (NC_000961) hypothetical protein [Pyrococc... 49 1e-04
ref|NP_248152.1| (NC_000909) conserved hypothetical protein... 47 3e-04
ref|NP_127340.1| (NC_000868) hypothetical protein [Pyrococc... 47 3e-04
gb|EAA02326.1| (AAAB01003560) agCP4005 [Anopheles gambiae s... 46 8e-04
ref|NP_341593.1| (NC_002754) Transcription regulator (exsB)... 45 0.002
>ref|NP_208127.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O25893|TRMU_HELPY Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||G64686 conserved hypothetical protein HP1335 - Helicobacter pylori
(strain 26695)
gb|AAD08378.1| (AE000635) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 360
Score = 719 bits (1856), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MNGFCARLRAITHNERLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHD 60
MNGFCARLRAITHNERLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHD
Sbjct: 1 MNGFCARLRAITHNERLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHD 60
Query: 61 LYIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLAL 120
LYIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLAL
Sbjct: 61 LYIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLAL 120
Query: 121 DHALKLGCEKIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDL 180
DHALKLGCEKIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDL
Sbjct: 121 DHALKLGCEKIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDL 180
Query: 181 LKKDIKPLALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIG 240
LKKDIKPLALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIG
Sbjct: 181 LKKDIKPLALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIG 240
Query: 241 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKD 300
THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKD
Sbjct: 241 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKD 300
Query: 301 FKDGEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVIV 360
FKDGEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVIV
Sbjct: 301 FKDGEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVIV 360
>ref|NP_223972.1| (NC_000921) putative TRNA
(5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
[Helicobacter pylori J99]
sp|Q9ZJQ0|TRMU_HELPJ Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||H71828 probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
- Helicobacter pylori (strain J99)
gb|AAD06840.1| (AE001549) putative TRNA
(5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
[Helicobacter pylori J99]
Length = 360
Score = 700 bits (1807), Expect = 0.0
Identities = 350/360 (97%), Positives = 354/360 (98%)
Query: 1 MNGFCARLRAITHNERLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHD 60
MNGFCARLRAIT NERLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHD
Sbjct: 1 MNGFCARLRAITFNERLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHD 60
Query: 61 LYIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLAL 120
LYIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLAL
Sbjct: 61 LYIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLAL 120
Query: 121 DHALKLGCEKIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDL 180
DHALKLGCEKIATGHYARVKEIDK+SYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDL
Sbjct: 121 DHALKLGCEKIATGHYARVKEIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDL 180
Query: 181 LKKDIKPLALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIG 240
LKKDIKPLALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIG
Sbjct: 181 LKKDIKPLALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIG 240
Query: 241 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKD 300
THKGYMQYTIGKRKGFS+KGALEPHFVVGIDAKKNEL+VGKKEDLATHSLKAKNKSL KD
Sbjct: 241 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 300
Query: 301 FKDGEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVIV 360
FKDGEYFIKARYRSVP KA VSLKD +IEV FKEPFYGVAKGQALVVYKDDILLGGGVIV
Sbjct: 301 FKDGEYFIKARYRSVPTKAFVSLKDGMIEVEFKEPFYGVAKGQALVVYKDDILLGGGVIV 360
>ref|NP_281268.1| (NC_002163) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Campylobacter jejuni]
sp|Q9PJ66|TRMU_CAMJE Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||A81421 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
2.1.1.61) Cj0053c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72540.1| (AL139074) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Campylobacter jejuni]
Length = 338
Score = 314 bits (805), Expect = 9e-85
Identities = 157/343 (45%), Positives = 226/343 (65%), Gaps = 8/343 (2%)
Query: 19 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIKNAQKACEFLGIPLE 78
MKI V +SGGVDS+ +AY LK GHE++G Y+KLH H+ IK +K FL IP
Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEENIKKVEKVANFLQIPYH 60
Query: 79 VLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATGHYAR 138
+LD Q+DFK+ VY F++ Y+EG+TPNPCALCN +K G L+ A LGCEK+ATGHYAR
Sbjct: 61 ILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYAR 120
Query: 139 VKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAMPFLGT 198
++ + I+ A+D++KDQSYFL + + E + L+FPLG++ K+D+K A + + L +
Sbjct: 121 LEN----NLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFA-STIEVLKS 175
Query: 199 LETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIGKRKGFSI 258
T KES EICFVE +Y+ L + ++ + G V + G+V+G H+GYM YTIGKR+GF +
Sbjct: 176 FATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGKHEGYMHYTIGKRRGFEV 235
Query: 259 KGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDFKDGEYFIKARYR--SVP 316
+GA EPHFV+ I+ K+N+++VG KE+L KN +L D K+ + +K RYR S P
Sbjct: 236 RGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFIDAKELDCEVKIRYRSKSTP 295
Query: 317 AKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
K + +D+ ++ K+P YG+A GQ V Y D ++ G I
Sbjct: 296 CKVEI-YEDKSAKIILKDPVYGLASGQMAVFYDHDKVIASGFI 337
>ref|NP_274563.1| (NC_003112) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Neisseria meningitidis MC58]
sp|Q9JYJ6|TRMU_NEIMB Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||A81069 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
NMB1556 [imported] - Neisseria meningitidis (group B
strain MD58)
gb|AAF41910.1| (AE002506) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Neisseria meningitidis MC58]
Length = 367
Score = 219 bits (558), Expect = 4e-56
Identities = 136/352 (38%), Positives = 202/352 (56%), Gaps = 18/352 (5%)
Query: 21 IAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIKNAQKA------CEFLG 74
I V LSGGVDSS +A LK+QG+++ G++++ + + +D Y Q + + +G
Sbjct: 10 IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQ-NWEDDDNDEYCSIKQDSFDAIAVADIIG 68
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATG 134
I +++++F +K V+ F+ Y G+TPNP LCN +KF LD+A+ G + IATG
Sbjct: 69 IDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYAVGQGADTIATG 128
Query: 135 HYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAMP 194
HYAR + + + Y+ + LD+ KDQSYFLY L+ + + +FPLG L K +++ LA
Sbjct: 129 HYARKEVRNGVHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLGGLEKPEVRRLAAE--- 185
Query: 195 FLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIGKR 253
F K+S ICF+ E+ + + L+K++ + G + +G+ +G H G M YT+G+R
Sbjct: 186 FKLPTAAKKDSTGICFIGERPFREFLQKYLPTD-NGKMVTPEGKTVGEHVGLMFYTLGQR 244
Query: 254 KGFSIKGALEPHFVVGIDAKKNELVVGKKED---LATHSLKAKNKS--LMKDFKDGEYFI 308
KG I GA EP FV D KNEL+V + D L T SL + S L + K G Y
Sbjct: 245 KGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLSFTLPERPKAGRYTC 304
Query: 309 KARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
K RYR A + L DE E+ F EP + V GQ+ V+Y DI LGGG+I
Sbjct: 305 KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLYDGDICLGGGII 356
>ref|NP_284459.1| (NC_003116) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Neisseria meningitidis Z2491]
pir||H81798 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
2.1.1.61) NMA1744 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84972.1| (AL162757) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Neisseria meningitidis Z2491]
Length = 383
Score = 219 bits (557), Expect = 5e-56
Identities = 135/352 (38%), Positives = 203/352 (57%), Gaps = 18/352 (5%)
Query: 21 IAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIKNAQKA------CEFLG 74
I V LSGGVDSS +A LK+QG+++ G++++ + + +D Y Q + + +G
Sbjct: 26 IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQ-NWEDDDNDEYCSIKQDSFDAIAVADIVG 84
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATG 134
I +++++F +K V+ F+ Y G+TPNP LCN +KF LD+A+ G + IATG
Sbjct: 85 IDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYAVGQGADTIATG 144
Query: 135 HYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAMP 194
HYAR + + + Y+ + LD+ KDQSYFLY L+ + + +FPLG L K +++ LA
Sbjct: 145 HYARKEVRNGVHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLGGLEKPEVRRLAAE--- 201
Query: 195 FLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIGKR 253
F K+S ICF+ E+ + + L+K++ + G + +G+ +G H G M YT+G+R
Sbjct: 202 FNLPTAAKKDSTGICFIGERPFREFLQKYLPTD-NGKMVTPEGKTVGEHVGLMFYTLGQR 260
Query: 254 KGFSIKGALEPHFVVGIDAKKNELVVGKKED---LATHSLKAKNKS--LMKDFKDGEYFI 308
KG I G EP FV D KNEL+V + D L T SL + S L + K+G Y
Sbjct: 261 KGLGIGGGGEPWFVAAKDLTKNELMVVQGHDHPLLYTRSLVMNDLSFTLPERPKEGHYTC 320
Query: 309 KARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
K RYR A + L DE +E+ F EP + V GQ+ V+Y DI LGGG+I
Sbjct: 321 KTRYRMADAPCELRYLDDETVELVFDEPQWAVTPGQSAVLYDGDICLGGGII 372
>sp|Q9JTJ9|TRMU_NEIMA Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
Length = 367
Score = 219 bits (557), Expect = 5e-56
Identities = 135/352 (38%), Positives = 203/352 (57%), Gaps = 18/352 (5%)
Query: 21 IAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIKNAQKA------CEFLG 74
I V LSGGVDSS +A LK+QG+++ G++++ + + +D Y Q + + +G
Sbjct: 10 IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQ-NWEDDDNDEYCSIKQDSFDAIAVADIVG 68
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATG 134
I +++++F +K V+ F+ Y G+TPNP LCN +KF LD+A+ G + IATG
Sbjct: 69 IDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYAVGQGADTIATG 128
Query: 135 HYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAMP 194
HYAR + + + Y+ + LD+ KDQSYFLY L+ + + +FPLG L K +++ LA
Sbjct: 129 HYARKEVRNGVHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLGGLEKPEVRRLAAE--- 185
Query: 195 FLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIGKR 253
F K+S ICF+ E+ + + L+K++ + G + +G+ +G H G M YT+G+R
Sbjct: 186 FNLPTAAKKDSTGICFIGERPFREFLQKYLPTD-NGKMVTPEGKTVGEHVGLMFYTLGQR 244
Query: 254 KGFSIKGALEPHFVVGIDAKKNELVVGKKED---LATHSLKAKNKS--LMKDFKDGEYFI 308
KG I G EP FV D KNEL+V + D L T SL + S L + K+G Y
Sbjct: 245 KGLGIGGGGEPWFVAAKDLTKNELMVVQGHDHPLLYTRSLVMNDLSFTLPERPKEGHYTC 304
Query: 309 KARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
K RYR A + L DE +E+ F EP + V GQ+ V+Y DI LGGG+I
Sbjct: 305 KTRYRMADAPCELRYLDDETVELVFDEPQWAVTPGQSAVLYDGDICLGGGII 356
>ref|NP_470883.1| (NC_003212) similar to putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria innocua]
emb|CAC96778.1| (AL596168) similar to putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria innocua]
Length = 371
Score = 214 bits (545), Expect = 1e-54
Identities = 132/358 (36%), Positives = 208/358 (57%), Gaps = 25/358 (6%)
Query: 19 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLK---------LHASEKKHDLYIKNAQKA 69
+++ V +SGGVDSS +A+ LKEQG++++GI++K + + + +D I+ A +
Sbjct: 8 IRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDEFGVCTATEDYDDVIRVANQ- 66
Query: 70 CEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCE 129
+GIP ++F+K++ V+ F++ Y+ G+TPNP +CN +KF L+HA LG +
Sbjct: 67 ---IGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGAD 123
Query: 130 KIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLA 189
+ATGHYA+VK++ + +D KDQ+YFL L + + K++FPLG + K +++ +A
Sbjct: 124 YVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTEVREIA 183
Query: 190 LNAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQY 248
A L T K+S ICF+ E+++ L +++ + G ++ L GEV+G H G M Y
Sbjct: 184 TKA--GLATANK-KDSTGICFIGERNFKQFLSEYLPAQ-PGDMRTLNGEVLGKHDGLMYY 239
Query: 249 TIGKRKGFSIKGALEPHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLMKDFKDGE 305
TIG+R G I G EP FVVG D K N L V + + L + SL A + S + + +
Sbjct: 240 TIGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDISFTTNSEKPK 299
Query: 306 YFI---KARYRSVPAKAHVSLK-DEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
F+ K RYR K V+++ D EV F +P + GQA+V Y DI LGGG I
Sbjct: 300 TFVCTAKFRYRQTDTKVTVNMREDGTAEVVFADPVRAITPGQAVVFYDGDICLGGGTI 357
>ref|NP_242127.1| (NC_002570) (5-methylaminomethyl-2-thiouridylate)-methyltran
sferase [Bacillus halodurans]
sp|Q9KDF2|TRMU_BACHD Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
dbj|BAB04980.1| (AP001511) (5-methylaminomethyl-2-thiouridylate)-methyltran sferase
[Bacillus halodurans]
Length = 371
Score = 214 bits (544), Expect = 2e-54
Identities = 131/352 (37%), Positives = 198/352 (56%), Gaps = 15/352 (4%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYI-----KNAQKACEFLG 74
++ V +SGGVDSS +A LKEQG++++GI++K ++ + ++ + C LG
Sbjct: 10 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYQDVVQVCNQLG 69
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATG 134
I ++F+K++ V+ F+ Y+ G+TPNP +CN +KF L+HAL LG + +ATG
Sbjct: 70 IAYYAVNFEKEYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHALTLGADYVATG 129
Query: 135 HYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAMP 194
HYA+VK +D + D KDQ+YFL AL + +++++FPLG L KK+++ +A A
Sbjct: 130 HYAQVKNVDGQYQLIRGKDPNKDQTYFLNALSQQQLSRVMFPLGHLEKKEVRAIAERA-- 187
Query: 195 FLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIGKRK 254
L T + K+S ICF+ K + G ++ L GEV GTH G M YT+G+R+
Sbjct: 188 GLATAKK-KDSTGICFIGKRDFKEFLSSYLPAQPGEMQTLDGEVKGTHDGLMYYTLGQRQ 246
Query: 255 GFSIKGALEPHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLMKDFKDGEYF---I 308
G I G+ EP FV+G + +KN L VG+ L + L+A + + + E F
Sbjct: 247 GLGIGGSGEPWFVIGKNLEKNILYVGQGFHHPGLYSEGLRAIKVNWILRRESDEPFECTA 306
Query: 309 KARYRSVPAKAHV-SLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
K RYR K V D +EV F EP + GQA+V Y D+ LGGG I
Sbjct: 307 KFRYRQPDQKVTVYPQSDGAVEVLFAEPQRAITPGQAVVFYDGDVCLGGGTI 358
>ref|NP_465037.1| (NC_003210) similar to putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes EGD-e]
emb|CAC99590.1| (AL591979) similar to putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes]
Length = 371
Score = 213 bits (542), Expect = 3e-54
Identities = 134/358 (37%), Positives = 207/358 (57%), Gaps = 25/358 (6%)
Query: 19 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLK---------LHASEKKHDLYIKNAQKA 69
+++ V +SGGVDSS +A+ LKEQG++++GI++K + + + +D I+ A +
Sbjct: 8 IRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDEFGVCTATEDYDDVIRVANQ- 66
Query: 70 CEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCE 129
+GIP ++F+K++ V+ F++ Y+ G+TPNP +CN +KF L+HA LG +
Sbjct: 67 ---IGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGAD 123
Query: 130 KIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLA 189
+ATGHYA+VK++ + +D KDQ+YFL L + + K++FPLG + K +++ +A
Sbjct: 124 YVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGAMEKTEVREIA 183
Query: 190 LNAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQY 248
A L T + K+S ICF+ E+++ L +++ + G ++ L GEV+G H G M Y
Sbjct: 184 KKA--GLATADK-KDSTGICFIGERNFKQFLSEYLPAQ-PGEMRTLDGEVLGKHDGLMYY 239
Query: 249 TIGKRKGFSIKGALEPHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLMKDF---K 302
TIG+R G I G EP FVVG D K+N L V + E L + SL A + S + K
Sbjct: 240 TIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTNAEKPK 299
Query: 303 DGEYFIKARYRSVPAKAHVSLK-DEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
E K RYR K V L+ D EV F +P + GQA+V Y D+ LGGG I
Sbjct: 300 TIECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFYDGDVCLGGGTI 357
>ref|NP_441127.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|P73755|TRMU_SYNY3 Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||S74846 hypothetical protein sll0844 - Synechocystis sp. (strain PCC 6803)
dbj|BAA17807.1| (D90909) ORF_ID:sll0844~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 358
Score = 209 bits (533), Expect = 3e-53
Identities = 135/353 (38%), Positives = 202/353 (56%), Gaps = 15/353 (4%)
Query: 17 LKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKH-DLYIKNAQKACEFLGI 75
+ K+ V LSGGVDSS +A L QG+ +VG+ L L + + + +A CE LG+
Sbjct: 1 MTQKVVVGLSGGVDSSVAAALLHRQGYAVVGVTLWLMKGKGQCCSEGLVDAASICEQLGV 60
Query: 76 PLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LGCEKIATG 134
P E++D + F++ + D + Y EG TP PC+ CN +KFG L +A + LG +KIATG
Sbjct: 61 PHEIVDTRDLFQNHIIDYLVQGYGEGVTPLPCSQCNKAVKFGPMLQYAQQSLGIDKIATG 120
Query: 135 HYARVK--EIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNA 192
HYAR++ E + + A+D+ KDQSYFLY L E++A +FPLG+ K + LA A
Sbjct: 121 HYARIRFNEASQRYELLRAVDRQKDQSYFLYDLSQEILAATLFPLGEQTKTVTRQLA--A 178
Query: 193 MPFLGTLETYKESQEICFVEK--SYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTI 250
L T E K+SQ++C +E S D L K++ K G + +L G V+G H+G YTI
Sbjct: 179 EFDLSTAEK-KDSQDLCLIEAHGSMRDFLDKYI-APKAGEIVDLSGAVLGHHEGIHHYTI 236
Query: 251 GKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKN---KSLMKDFKDGEYF 307
G+RKG I A EP +VV +D N ++VG ++ + + S+ +
Sbjct: 237 GQRKGLGI-AAAEPLYVVKLDPVMNRVIVGDRQSAGSGECYVQRLNWVSIPEPTAPIRCE 295
Query: 308 IKARYRSVPAKAH-VSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
++ RYRS P + + D+ I++ F EP +G+ GQA V+Y D +LGGG+I
Sbjct: 296 VQVRYRSAPVTVNAIPWHDQQIKLVFDEPQFGITPGQAAVLYDGDRVLGGGII 348
>ref|NP_213838.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O67274|TRMU_AQUAE Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||G70405 conserved hypothetical protein aq_1224 - Aquifex aeolicus
gb|AAC07238.1| (AE000729) hypothetical protein [Aquifex aeolicus]
Length = 356
Score = 209 bits (531), Expect = 5e-53
Identities = 123/356 (34%), Positives = 208/356 (57%), Gaps = 20/356 (5%)
Query: 19 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASE-----KKHDLY-----IKNAQK 68
M++AV +SGGVDSS +A LKEQGH+++ + L+ H E + H++ +++A +
Sbjct: 1 MRVAVGMSGGVDSSVTALLLKEQGHDVIRVTLRFHTVEACEVNETHNVCCSPKDVQDASR 60
Query: 69 ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLG- 127
+ LGIP V +++ FKS V D F+ Y+ G+TPNPCALCN +K G + ++
Sbjct: 61 VAKRLGIPHLVFSWEEIFKSKVIDYFVEEYKRGRTPNPCALCNREVKTGFFARYLKQVAD 120
Query: 128 CEKIATGHYARVKEIDKIS-YIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIK 186
+K+ATGHYA+++E K I+ D+ +DQ+YFL + E + L FPLG K++++
Sbjct: 121 IDKLATGHYAKIEEDKKYGLVIKRPKDRKRDQTYFLSLVRREDLELLTFPLGAYTKEEVR 180
Query: 187 PLALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYM 246
+A + + ++SQE+CF+ + + ++ G++K++ G+V+G H+G
Sbjct: 181 EIAKR---YGLEVAQKRDSQEVCFLMGKSPGEYLEGILGKQRGLIKHVSGKVLGEHEGVY 237
Query: 247 QYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSL---MKDFKD 303
+YTIG+R+G I +P +V+ IDAK N L+VG++E L L K + ++ +++
Sbjct: 238 RYTIGQRRGLGISYG-KPVYVIDIDAKTNTLIVGEEEYLYNDKLLVKEINFHVPLEKWEN 296
Query: 304 GEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
I+ R++ VP + + +E V FKE G+ GQ + Y D+LLGGG+I
Sbjct: 297 VSAQIRYRHKPVPVE-RIEKTEEGFLVKFKEDVRGITPGQVVAFYDGDVLLGGGII 351
>ref|NP_658425.1| (NC_003995) tRNA_Me_trans, tRNA methyl transferase [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 371
Score = 206 bits (525), Expect = 3e-52
Identities = 133/361 (36%), Positives = 198/361 (54%), Gaps = 33/361 (9%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLK----------LHASEKKHDLYIKNAQKA 69
++ + +SGGVDSS +A LKEQG++++GI++K A+E +D+ +
Sbjct: 9 RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYNDVI-----EV 63
Query: 70 CEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCE 129
C +GIP ++F+K + V+ F++ Y G+TPNP +CN +KF L+HA+ LG +
Sbjct: 64 CNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAIALGAD 123
Query: 130 KIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLA 189
+ATGHYARV +D + +D KDQ+YFL L E ++K +FPLG+L K I+ +A
Sbjct: 124 YVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREMA 183
Query: 190 LNAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQY 248
A L T K+S ICF+ E+++ D L ++ + GV++ L GEV G H G M Y
Sbjct: 184 KEA--GLAT-AAKKDSTGICFIGERNFKDFLSNYLPAQ-PGVMQTLSGEVKGKHDGLMYY 239
Query: 249 TIGKRKGFSIKGALEPHFVVGIDAKKNELVVGK---------KEDLATHSLKAKNKSLMK 299
TIG+R G I G +P F VG + K+N L V + E +AT+ N++ K
Sbjct: 240 TIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNEAKEK 299
Query: 300 DFKDGEYFIKARYRSVPAKAHVSLKDE-VIEVGFKEPFYGVAKGQALVVYKDDILLGGGV 358
+FK K RYR K V + DE + + EP + GQA+V Y D LGG
Sbjct: 300 EFK---CTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFYDGDECLGGAT 356
Query: 359 I 359
I
Sbjct: 357 I 357
>ref|NP_326389.1| (NC_002771) TRNA
(5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
[Mycoplasma pulmonis]
emb|CAC13731.1| (AL445565) TRNA
(5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
[Mycoplasma pulmonis]
Length = 371
Score = 206 bits (523), Expect = 4e-52
Identities = 124/362 (34%), Positives = 203/362 (55%), Gaps = 29/362 (8%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY---------------IK 64
KI + LSGGVDSS +AY LK+QGHE++G++++ S D+ +
Sbjct: 3 KIVIGLSGGVDSSVAAYLLKQQGHEVIGLFMRNWDSLVNSDILGNSSLNQSLCPQEQDFQ 62
Query: 65 NAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHAL 124
+A + + +GIP+ +DF K++ +V++ I Y+ G TPNP LCN +KF ++A+
Sbjct: 63 DASRVAKQIGIPIYRVDFIKEYWDSVFENLIEQYQNGFTPNPDILCNKYIKFDKFFNYAI 122
Query: 125 -KLGCEKIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 183
K G + +A GHYA KE + +D++KDQSYFL + +V+ K++FPLG++ K
Sbjct: 123 EKFGADYVAMGHYAIAKE----GNLYRGIDQSKDQSYFLTQVRSQVLEKVIFPLGNMEKS 178
Query: 184 DIKPLALNAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTH 242
+++ +A A + K+S ICF+ E+ + D L+ ++ + +V +++G H
Sbjct: 179 EVRRIAQEANLYTANK---KDSTGICFIGERKFTDFLQNYIPTQPGTIVDITTKKIVGNH 235
Query: 243 KGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVV---GKKEDLATHSLKAKNKSLMK 299
G M YT+G+RKG ++ G EP+FVVG D +K ++ V +K+ L ++ L A+N +L
Sbjct: 236 IGAMYYTLGQRKGLNLGGMKEPYFVVGHDLEKKQVFVAPASEKKWLTSNWLFAQNLNLNN 295
Query: 300 -DFKDGEYFIKARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGG 357
DF K RYR + V L+++ I+V + E F V GQ + +Y LGG
Sbjct: 296 HDFNPENLSAKFRYRQKDVRVKVEFLENDQIKVYYPEGFEAVTPGQQIALYDGQKCLGGA 355
Query: 358 VI 359
VI
Sbjct: 356 VI 357
>ref|NP_357716.1| (NC_003098) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae R6]
gb|AAK98926.1| (AE008396) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae R6]
Length = 391
Score = 204 bits (518), Expect = 2e-51
Identities = 132/366 (36%), Positives = 204/366 (55%), Gaps = 21/366 (5%)
Query: 11 ITHNERLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYI-----KN 65
+T ++ K ++ V +SGGVDSS +A LKEQG++++GI++K ++ + K+
Sbjct: 17 LTMSDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKD 76
Query: 66 AQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK 125
+ +GIP ++F+K++ V++ F+ Y G+TPNP +CN +KF LD+A+
Sbjct: 77 VVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMT 136
Query: 126 LGCEKIATGHYARV-KEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKD 184
LG + +ATGHYARV ++ D ++ +D KDQ+YFL L E + K +FPLG L K +
Sbjct: 137 LGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLKKPE 196
Query: 185 IKPLALNAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHK 243
++ LA A L T + K+S ICF+ EK++ + L ++ + G + + G +G H
Sbjct: 197 VRKLAEEA--GLSTAKK-KDSTGICFIGEKNFKNFLSNYLPAQ-PGRMMTVDGRDMGEHA 252
Query: 244 GYMQYTIGKRKGFSIKGA----LEPHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKS 296
G M YTIG+R G I G P FVVG D KN L VG+ + L + SL+A
Sbjct: 253 GLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVH 312
Query: 297 LMKDFKDG---EYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDIL 353
++ + E K RYR +K V +K + EV F EP + GQA+V Y +
Sbjct: 313 FTREMPEEFTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGEEC 372
Query: 354 LGGGVI 359
LGGG+I
Sbjct: 373 LGGGLI 378
>ref|NP_622864.1| (NC_003869) predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Thermoanaerobacter tengcongensis]
gb|AAM24468.1| (AE013086) predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Thermoanaerobacter tengcongensis]
Length = 364
Score = 203 bits (517), Expect = 2e-51
Identities = 129/360 (35%), Positives = 201/360 (55%), Gaps = 26/360 (7%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASE--KKHD--------LYIKNAQKA 69
++ V +SGGVDSS +AY LKEQG E++G+ +++ K D I +A+K
Sbjct: 6 RVVVGMSGGVDSSVTAYLLKEQGFEVIGVTMRVWVDPYGKARDDDKSCCSLKAIHDAKKV 65
Query: 70 CEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCE 129
E LGIP ++ + F + FI+ Y +G+TPNPC CN +KFG L+ A +LG
Sbjct: 66 AEILGIPHYTVNLSEVFYDKIVKYFIDEYLKGRTPNPCVFCNRFIKFGDLLEKAHELGAY 125
Query: 130 KIATGHYARVKEID---KISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIK 186
IATGHY R KE D K +++ LD KDQSY LY L E + +FPLG+ K++++
Sbjct: 126 YIATGHYVR-KEYDEDRKRYLLKKGLDFKKDQSYMLYRLTQEQLKHALFPLGNYTKEEVR 184
Query: 187 PLALN-AMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVE-KEGVVKNLQGEVIGTHK 243
LA +P + +ESQEICF+ + Y +K+ ++ + K G +++ G +G HK
Sbjct: 185 ALAEKIGLP----VADKRESQEICFIPDNDYKAFIKRQIKKDVKPGEFRDIHGNFLGYHK 240
Query: 244 GYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDFK- 302
G + YTIG+RKG + P +VV ID + N ++VG +ED+ L + N + + K
Sbjct: 241 GIINYTIGQRKGLGLSSD-RPLYVVDIDPENNVVIVGHQEDVWGEELISSNNNFISIEKL 299
Query: 303 DGEYFIKARYRSVPAKAHVSLK---DEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
+ E + A+ R + +K D+ + V F P + GQ++V Y D+++GGG+I
Sbjct: 300 EEEIKVTAKIRYTAKEDEAIIKPYGDDKVLVRFLRPQRAITPGQSVVFYDGDVVVGGGII 359
>ref|NP_562699.1| (NC_003366) probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium perfringens]
dbj|BAB81489.1| (AP003191) probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium perfringens]
Length = 350
Score = 202 bits (515), Expect = 4e-51
Identities = 124/353 (35%), Positives = 201/353 (56%), Gaps = 25/353 (7%)
Query: 25 LSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHD---------LYIKNAQKACEFLGI 75
+SGGVDSS +AY LKEQG++++G+ +++ +K+++ + +A++ + L I
Sbjct: 1 MSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVAQKLDI 60
Query: 76 PLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATGH 135
P VL+F+ FK V D F++ Y +G+TPNPC CN +KF L A +G + +ATGH
Sbjct: 61 PFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADYVATGH 120
Query: 136 YARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAMPF 195
YA+++E D + + D KDQ+Y LY L E + + P G+ K I+ +A
Sbjct: 121 YAKIEERDGRFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKIREIAKE---- 176
Query: 196 LG-TLETYKESQEICFVEKS----YIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTI 250
+G + K+S+EICF+ + YI + + G + G V+G HKG + YTI
Sbjct: 177 IGLDVHNKKDSEEICFIPDNNHGRYI--CEAAPNKVRPGNFVDKYGNVLGKHKGIVYYTI 234
Query: 251 GKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMK-DFKDG--EYF 307
G+RKG + P FV I+ N +VVG +ED+ L K+ + + D +G E
Sbjct: 235 GQRKGLGL-ALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISIDKLEGPMEVE 293
Query: 308 IKARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
K RY + PAKA +S +++ ++V F++ + KGQ++V YKDD+++GGG+I
Sbjct: 294 AKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDDLVVGGGII 346
>ref|NP_348850.1| (NC_003030) TRNA
5-methylaminomethyl-2-thiouridylate)-methyltransferase,
PP-loop ATPase [Clostridium acetobutylicum]
gb|AAK80190.1|AE007723_8 (AE007723) TRNA
5-methylaminomethyl-2-thiouridylate)-methyltransferase,
PP-loop ATPase [Clostridium acetobutylicum]
Length = 355
Score = 202 bits (515), Expect = 4e-51
Identities = 125/359 (34%), Positives = 204/359 (56%), Gaps = 21/359 (5%)
Query: 17 LKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY---------IKNAQ 67
+ K+ + +SGGVDSS +AY LKEQG++++G+ +KL + + +++A+
Sbjct: 1 MNKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMKLTPDDAFYTEQEGGCCSLSAVEDAR 60
Query: 68 KACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLG 127
+ +GIP V++F FK V D F Y G+TPNPC CN +KF L A LG
Sbjct: 61 RVAYRIGIPFYVVNFTDIFKEKVIDYFTEEYLNGKTPNPCIACNKYIKFDALLKKAESLG 120
Query: 128 CEKIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKP 187
+ IATGHY R+ E + I+++ D+ KDQ+Y +Y + + + + P GD K I+
Sbjct: 121 ADYIATGHYCRIVEENGRYVIRKSEDEKKDQTYVMYNMTQDQLKHTLMPCGDYKKDRIRE 180
Query: 188 LALNAMPFLG-TLETYKESQEICFV-EKSYIDTLKKHV-EVEKEGVVKNLQGEVIGTHKG 244
+A +G + K+S+EICF+ + + +K+ + K G + +G+V+G HKG
Sbjct: 181 IARE----IGLNVFDKKDSEEICFIPDNDHGGFIKRECPKAVKTGNFVDKEGKVLGKHKG 236
Query: 245 YMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSL-KAKNKSLMKD--F 301
+ YTIG+RKG I + FV IDA KN++V+G++E++ + L KN + D
Sbjct: 237 IIYYTIGQRKGLGIATG-KRVFVTNIDAMKNQVVIGEEEEIFENELISFKNNFIPFDKLT 295
Query: 302 KDGEYFIKARYRSVPAKAHV-SLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
+ E K RY + +KA + + DE ++V F++P + KGQ++V Y D+L+GGG+I
Sbjct: 296 EPMEVDAKIRYNAKASKATIYPVDDENVKVKFEKPQRAITKGQSVVFYDGDLLVGGGII 354
>ref|NP_295482.1| (NC_001263) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Deinococcus radiodurans]
pir||H75357 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase -
Deinococcus radiodurans (strain R1)
gb|AAF11314.1|AE002017_5 (AE002017) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Deinococcus radiodurans]
Length = 413
Score = 202 bits (514), Expect = 5e-51
Identities = 122/356 (34%), Positives = 191/356 (53%), Gaps = 23/356 (6%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIK--------NAQKACE 71
++ +SGGVDSS +A LKEQG++++G ++ +K+ D + A++ E
Sbjct: 54 RVLCAMSGGVDSSVTASLLKEQGYQVIGAMMRFWPDDKRTDTFDSCCSPDAAYEARRVAE 113
Query: 72 FLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKI 131
+G+P +LD+++ F+ + F+ Y G+TPNPC CN +KF + A LGC +
Sbjct: 114 QVGVPFYLLDYREPFQRHIVGPFLEEYARGRTPNPCVNCNTKVKFDELVKKAKMLGCRYV 173
Query: 132 ATGHYARVKEIDKIS---YIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPL 188
ATGHY VK +D D KDQ+YFL+ + + ++FP+G+L K ++ +
Sbjct: 174 ATGHY--VKRVDNAQGEVEFHRGDDPRKDQTYFLWGTPRDALPYILFPVGELEKPQVREI 231
Query: 189 ALNAMPFLGTLETYK-ESQEICFVEKSYIDTLKKHVEVEKEGVVKNL-QGEVIGTHKGYM 246
A G L K ESQ ICFV D + +H+ + +G ++ + GEV+G H G
Sbjct: 232 AAER----GLLTAQKPESQNICFVPGKVQDFVAEHLP-QAQGYIREIATGEVVGEHLGTQ 286
Query: 247 QYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDFKD--G 304
YT+G++KG + + VV +D N + VG +D LKA + + + D +
Sbjct: 287 FYTLGQKKGLGLYQSHRVRHVVHLDPDSNTVWVGDYDDCLWTGLKATDANYLLDLAELPT 346
Query: 305 EYFIKARYRSVPAKAHVSLKD-EVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
E ++ RYR+ P KAHV D E E+ F EP + VA GQ+ V+Y LLGGG+I
Sbjct: 347 ELEVQVRYRTAPVKAHVLHADAEGFELEFAEPQFAVAPGQSAVLYAGSRLLGGGLI 402
>sp|Q9RTK1|TRMU_DEIRA Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
Length = 380
Score = 202 bits (514), Expect = 5e-51
Identities = 122/356 (34%), Positives = 191/356 (53%), Gaps = 23/356 (6%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIK--------NAQKACE 71
++ +SGGVDSS +A LKEQG++++G ++ +K+ D + A++ E
Sbjct: 21 RVLCAMSGGVDSSVTASLLKEQGYQVIGAMMRFWPDDKRTDTFDSCCSPDAAYEARRVAE 80
Query: 72 FLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKI 131
+G+P +LD+++ F+ + F+ Y G+TPNPC CN +KF + A LGC +
Sbjct: 81 QVGVPFYLLDYREPFQRHIVGPFLEEYARGRTPNPCVNCNTKVKFDELVKKAKMLGCRYV 140
Query: 132 ATGHYARVKEIDKIS---YIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPL 188
ATGHY VK +D D KDQ+YFL+ + + ++FP+G+L K ++ +
Sbjct: 141 ATGHY--VKRVDNAQGEVEFHRGDDPRKDQTYFLWGTPRDALPYILFPVGELEKPQVREI 198
Query: 189 ALNAMPFLGTLETYK-ESQEICFVEKSYIDTLKKHVEVEKEGVVKNL-QGEVIGTHKGYM 246
A G L K ESQ ICFV D + +H+ + +G ++ + GEV+G H G
Sbjct: 199 AAER----GLLTAQKPESQNICFVPGKVQDFVAEHLP-QAQGYIREIATGEVVGEHLGTQ 253
Query: 247 QYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDFKD--G 304
YT+G++KG + + VV +D N + VG +D LKA + + + D +
Sbjct: 254 FYTLGQKKGLGLYQSHRVRHVVHLDPDSNTVWVGDYDDCLWTGLKATDANYLLDLAELPT 313
Query: 305 EYFIKARYRSVPAKAHVSLKD-EVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
E ++ RYR+ P KAHV D E E+ F EP + VA GQ+ V+Y LLGGG+I
Sbjct: 314 ELEVQVRYRTAPVKAHVLHADAEGFELEFAEPQFAVAPGQSAVLYAGSRLLGGGLI 369
>ref|NP_344664.1| (NC_003028) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae TIGR4]
gb|AAK74304.1| (AE007328) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae TIGR4]
Length = 373
Score = 202 bits (514), Expect = 5e-51
Identities = 132/363 (36%), Positives = 202/363 (55%), Gaps = 21/363 (5%)
Query: 14 NERLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYI-----KNAQK 68
++ K ++ V +SGGVDSS +A LKEQG++++GI++K ++ + K+
Sbjct: 2 SDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVVA 61
Query: 69 ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 128
+ +GIP ++F+K++ V++ F+ Y G+TPNP +CN +KF LD+A+ LG
Sbjct: 62 VADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGA 121
Query: 129 EKIATGHYARV-KEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKP 187
+ +ATGHYARV ++ D ++ +D KDQ+YFL L E + K +FPLG L K +++
Sbjct: 122 DYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVRR 181
Query: 188 LALNAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYM 246
LA A L T + K+S ICF+ EK++ + L ++ + G + + G +G H G M
Sbjct: 182 LAEEA--GLSTAKK-KDSTGICFIGEKNFKNFLSNYLPAQ-PGRMMTVDGRDMGEHAGLM 237
Query: 247 QYTIGKRKGFSIKGA----LEPHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLMK 299
YTIG+R G I G P FVVG D KN L VG+ + L + SL+A +
Sbjct: 238 YYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTR 297
Query: 300 DFKDG---EYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGG 356
+ + E K RYR +K V +K E EV F EP + GQA+V Y + LGG
Sbjct: 298 EMPEEFTLECTAKFRYRQPDSKVTVHVKGEKTEVIFAEPQRAITPGQAVVFYDGEECLGG 357
Query: 357 GVI 359
G+I
Sbjct: 358 GLI 360
>sp|O35020|TRMU_BACSU Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
Length = 370
Score = 201 bits (511), Expect = 1e-50
Identities = 132/360 (36%), Positives = 191/360 (52%), Gaps = 26/360 (7%)
Query: 18 KMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLK----------LHASEKKHDLYIKNAQ 67
+ K+ V +SG +DSS +A LKEQG++++GI++K A+E D+
Sbjct: 6 RYKVVVGMSGDIDSSVAALLLKEQGYDVIGIFMKNWDDTDENGFCTATEDYEDVI----- 60
Query: 68 KACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLG 127
+ C +GIP ++F+K + V+ F++ Y+ G+TPNP LCN +KF L+HAL LG
Sbjct: 61 RVCNQIGIPYYAVNFEKQYYEKVFQYFLDEYKAGRTPNPDVLCNKEIKFKAFLEHALSLG 120
Query: 128 CEKIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKP 187
+ +ATGHYARV + +D+ KDQ+YFL L + ++K++FP+G+L K ++
Sbjct: 121 ADYLATGHYARVDRSGGKVRMLRGIDENKDQTYFLNQLTEDTLSKVMFPIGELQKSRVRE 180
Query: 188 LALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQ 247
+A A L T T K+S ICF+ + T + G + + GEV G H G M
Sbjct: 181 IAKEAE--LAT-ATKKDSTGICFIGERNFKTFLSQYLPAQPGDMMTMDGEVKGRHDGLMY 237
Query: 248 YTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLMK-DFKD 303
YTIG+R G I G+ EP F VG D +KN L V + L + + A N S ++ D
Sbjct: 238 YTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNISWVRSDIMK 297
Query: 304 GEYF---IKARYRSVPAKAHVSLKDE-VIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
GE K RYR K V + E EV F E V GQA+V Y + LGGG I
Sbjct: 298 GEEISCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFYDGEECLGGGTI 357
>ref|NP_374734.1| (NC_002745) (5-methylaminomethyl-2-thiouridylate)-methyltran
sferase [Staphylococcus aureus subsp. aureus N315]
dbj|BAB42713.1| (AP003134) (5-methylaminomethyl-2-thiouridylate)-methyltran sferase
[Staphylococcus aureus subsp. aureus N315]
Length = 372
Score = 200 bits (509), Expect = 2e-50
Identities = 127/361 (35%), Positives = 198/361 (54%), Gaps = 28/361 (7%)
Query: 19 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLK----------LHASEKKHDLYIKNAQK 68
+++ V +SGGVDSS +A+ LKEQG++++GI++K A+E +D+ +
Sbjct: 6 IRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCTATEDYNDVI-----E 60
Query: 69 ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 128
C +GIP ++F+K++ V+ F++ Y++G+TPNP +CN +KF LDHA+ LG
Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120
Query: 129 EKIATGHYARV-KEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKP 187
+ +ATGHYAR+ + D + +D KDQ+YFL L + ++K++FP+GD+ K +++
Sbjct: 121 DYVATGHYARIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKSEVRR 180
Query: 188 LALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQ 247
+A L T + K+S ICF+ + T + G + L G+ +G H G M
Sbjct: 181 IA--EEQGLVTAKK-KDSTGICFIGEKNFKTFLSQYLPAQPGDMITLDGKKMGKHSGLMY 237
Query: 248 YTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLM----KD 300
YTIG+R G I G +P FVVG + K N L V + + L + L A + S + D
Sbjct: 238 YTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVNPEDND 297
Query: 301 FKDG-EYFIKARYRSVPAKAHVSLK-DEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGV 358
G E K RYR K V + D + V F EP + GQA+V Y+ D+ LGG
Sbjct: 298 LDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGDVCLGGAT 357
Query: 359 I 359
I
Sbjct: 358 I 358
>ref|NP_372145.1| (NC_002758) 5-methylaminomethyl-2-thiouridylate-methyltransf erase
[Staphylococcus aureus subsp. aureus Mu50]
dbj|BAB57783.1| (AP003362) 5-methylaminomethyl-2-thiouridylate-methyltransf erase
[Staphylococcus aureus subsp. aureus Mu50]
Length = 372
Score = 200 bits (509), Expect = 2e-50
Identities = 127/361 (35%), Positives = 198/361 (54%), Gaps = 28/361 (7%)
Query: 19 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLK----------LHASEKKHDLYIKNAQK 68
+++ V +SGGVDSS +A+ LKEQG++++GI++K A+E +D+ +
Sbjct: 6 IRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCTATEDYNDVI-----E 60
Query: 69 ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 128
C +GIP ++F+K++ V+ F++ Y++G+TPNP +CN +KF LDHA+ LG
Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120
Query: 129 EKIATGHYARV-KEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKP 187
+ +ATGHYAR+ + D + +D KDQ+YFL L + ++K++FP+GD+ K +++
Sbjct: 121 DYVATGHYARIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKSEVRR 180
Query: 188 LALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQ 247
+A L T + K+S ICF+ + T + G + L G+ +G H G M
Sbjct: 181 IA--EEQGLVTAKK-KDSTGICFIGEKNFKTFLSQYLPAQPGDMITLDGKKMGKHSGLMY 237
Query: 248 YTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLM----KD 300
YTIG+R G I G +P FVVG + K N L V + + L + L A + S + D
Sbjct: 238 YTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVNPEDND 297
Query: 301 FKDG-EYFIKARYRSVPAKAHVSLK-DEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGV 358
G E K RYR K V + D + V F EP + GQA+V Y+ D+ LGG
Sbjct: 298 LDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGDVCLGGAT 357
Query: 359 I 359
I
Sbjct: 358 I 358
>ref|NP_603662.1| (NC_003454) tRNA (5-methylaminomethyl-2-thiouridylate)
-methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94961.1| (AE010586) tRNA (5-methylaminomethyl-2-thiouridylate)
-methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 362
Score = 200 bits (509), Expect = 2e-50
Identities = 124/350 (35%), Positives = 186/350 (52%), Gaps = 27/350 (7%)
Query: 19 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIKNAQKACEFLGIPLE 78
+++ V +SGGVDSS AY LK+QG+++ G+ +K E +A+K C+ LGI
Sbjct: 24 IRVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS------DAKKVCDDLGIEHY 77
Query: 79 VLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATGHYAR 138
+LD + +FK V D F+N Y G+TPNPC +CN +KFG LD L +ATGHY +
Sbjct: 78 ILDVRDEFKEKVVDYFVNEYMNGRTPNPCMVCNRYIKFGKMLDFILSKDASFMATGHYTK 137
Query: 139 VKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAMPFLGT 198
+K + D KDQ YFL +E ++K++FP+GDL K ++ LA LG
Sbjct: 138 LKN----GLLSVGDDSNKDQVYFLSQIEKNKLSKIIFPVGDLEKTKLRELAEQ----LGV 189
Query: 199 -LETYKESQEICFVEKSYIDTL---KKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIGKRK 254
+ + K+SQEICFV+ + + EK G + + G ++G HKG+ YTIG+RK
Sbjct: 190 RVYSKKDSQEICFVDDGKLKQFLIENTKGKAEKPGNIVDKNGNILGKHKGFSFYTIGQRK 249
Query: 255 GFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSL-----MKDFKDGEYFIK 309
G I EP +V+ D K N ++VG+ EDL L A +L ++ + E F K
Sbjct: 250 GLGISSE-EPLYVLAFDRKTNNIIVGQNEDLFRDELIATRLNLFSVSSLEGLDNLECFAK 308
Query: 310 ARYRSVPAKAHVSLKDEVIEVGF-KEPFYGVAKGQALVVYKDD--ILLGG 356
R R + K + + +V F + GQ +V Y +D ++ GG
Sbjct: 309 TRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPGQGIVFYNNDGNVIAGG 358
>ref|NP_602720.1| (NC_003454) tRNA (5-methylaminomethyl-2-thiouridylate)
-methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94019.1| (AE010494) tRNA (5-methylaminomethyl-2-thiouridylate)
-methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 343
Score = 200 bits (508), Expect = 2e-50
Identities = 122/348 (35%), Positives = 196/348 (56%), Gaps = 16/348 (4%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIKNAQKACEFLGIPLEV 79
K+ + +SGGVDSS SAY LKEQG+E++GI L H E D I++ +K C+ LGI EV
Sbjct: 3 KVVIGMSGGVDSSVSAYLLKEQGYEVIGITLNQHLEENSKD--IEDTKKVCDKLGIIHEV 60
Query: 80 LDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATGHYARV 139
++ +KDF++ V F+ Y G+TP+PC +C+ +KF + D A K E +ATGHY V
Sbjct: 61 VNIRKDFENIVIKYFLEGYNSGKTPSPCIICDDEIKFKILFDIADKYNAEYVATGHYTSV 120
Query: 140 KEIDKIS-YIQEALDK-TKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAMPFLG 197
+ + S Y+ +++ KDQSY LY L + + +L+FPL D K++I+ +AL
Sbjct: 121 EYSEVFSKYLLKSVHSIIKDQSYMLYRLSPDKLERLIFPLKDYSKQEIREIALKI----- 175
Query: 198 TLETY--KESQEICFVEKSYIDTLKKHVEVE-KEGVVKNLQGEVIGTHKGYMQYTIGKRK 254
LE + K+SQ +CF ++ Y + LK+++ E G + G ++G H+GY YTIG+R+
Sbjct: 176 DLEVHDKKDSQGVCFAKEGYKEFLKENLRDEIVRGNFIDKNGNILGQHEGYQLYTIGQRR 235
Query: 255 GFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDF---KDGEYFIKAR 311
G I +P F+ I A+ N++V+G+ +L ++ N ++ ++ E + R
Sbjct: 236 GLGI-NLSKPVFITEIKAQTNDIVLGEFSELFIDKVELINSKFSVEYEKLENLELLARPR 294
Query: 312 YRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
+ S + I + E AKGQ +V + D ++GGG I
Sbjct: 295 FSSTGFYGKLIKDKNKIYFKYNEENAHNAKGQHIVFFYDGFVVGGGEI 342
>ref|NP_405219.1| (NC_003143) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis]
emb|CAC90460.1| (AJ414149) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis]
Length = 371
Score = 199 bits (507), Expect = 3e-50
Identities = 126/367 (34%), Positives = 208/367 (56%), Gaps = 28/367 (7%)
Query: 14 NERLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-----IKNAQK 68
++ + K+ V +SGGVDSS SAY L++QG+++ G+++K + + + +AQ
Sbjct: 2 SDNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEEYCSAATDLADAQA 61
Query: 69 ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LG 127
C+ LG+ L ++F ++ V++ F+ Y+ G+TPNP LCN +KF L+ A + LG
Sbjct: 62 VCDKLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLG 121
Query: 128 CEKIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKP 187
+ IATGHY R +++D S + LD KDQSYFLY L HE IA+ +FP+G+L K +++
Sbjct: 122 ADYIATGHYVRRQDVDGKSRLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEVRR 181
Query: 188 LALNAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYM 246
+A + + + K+S ICF+ E+ + D L +++ + G + + G+++G H+G M
Sbjct: 182 IA-EQLDLVTAKK--KDSTGICFIGERKFRDFLGRYLPAQ-PGPIMTVDGQLVGKHQGLM 237
Query: 247 QYTIGKRKGFSIKGALE----PHFVVGIDAKKNELVVGKKED---LATHSLKAK------ 293
+T+G+RKG I G E P +VV D N L+V + + L + L A+
Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVVDKDLDSNTLLVAQGHEHPRLMSVGLVAQQLHWVD 297
Query: 294 NKSLMKDFKDGEYFIKARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDI 352
+ + F+ +K RYR V+ L DE ++V F +P V GQ+ V Y+ +I
Sbjct: 298 RQPVTAPFR---CVVKTRYRQQDIPCTVTPLDDERVDVRFDDPVAAVTPGQSAVFYQGEI 354
Query: 353 LLGGGVI 359
LGGG+I
Sbjct: 355 CLGGGII 361
>sp|P25745|TRMU_ECOLI tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
dbj|BAA35955.1| (D90748) Hypothetical protein in purB 5'region (orf-15) .
[Escherichia coli]
dbj|BAA35964.1| (D90749) Hypothetical protein in purB 5'region (orf-15) .
[Escherichia coli]
Length = 368
Score = 199 bits (507), Expect = 3e-50
Identities = 132/363 (36%), Positives = 204/363 (55%), Gaps = 32/363 (8%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-----IKNAQKACEFLG 74
K+ V +SGGVDSS SA+ L++QG+++ G+++K + + + +AQ C+ LG
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLG 66
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LGCEKIAT 133
I L ++F ++ V++ F+ Y+ G+TPNP LCN +KF L+ A + LG + IAT
Sbjct: 67 IELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIAT 126
Query: 134 GHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAM 193
GHY R ++D S + LD KDQSYFLY L HE IA+ +FP+G+L K ++ +A +
Sbjct: 127 GHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAED-- 184
Query: 194 PFLGTLET-YKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIG 251
LG + K+S ICF+ E+ + + L +++ + G + + G+ IG H+G M +T+G
Sbjct: 185 --LGLVTAKKKDSTGICFIGERKFREFLGRYLPAQ-PGKIITVDGDEIGEHQGLMYHTLG 241
Query: 252 KRKGFSI----KGALEPHFVVGIDAKKNELVVGKKED---LATHSLKAKNKSLMKDFKDG 304
+RKG I +G EP +VV D + N LVV + + L + L A+ + D
Sbjct: 242 QRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQ----QLHWVDR 297
Query: 305 EYF-------IKARYRSVPAKAHV-SLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGG 356
E F +K RYR V +L D+ IEV F EP V GQ+ V Y ++ LGG
Sbjct: 298 EPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEVCLGG 357
Query: 357 GVI 359
G+I
Sbjct: 358 GII 360
>ref|NP_415651.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
pir||B64858 probable ATPase ycfB - Escherichia coli
gb|AAC74217.1| (AE000213) orf, hypothetical protein [Escherichia coli K12]
Length = 383
Score = 199 bits (507), Expect = 3e-50
Identities = 132/363 (36%), Positives = 204/363 (55%), Gaps = 32/363 (8%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-----IKNAQKACEFLG 74
K+ V +SGGVDSS SA+ L++QG+++ G+++K + + + +AQ C+ LG
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLG 81
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LGCEKIAT 133
I L ++F ++ V++ F+ Y+ G+TPNP LCN +KF L+ A + LG + IAT
Sbjct: 82 IELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIAT 141
Query: 134 GHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAM 193
GHY R ++D S + LD KDQSYFLY L HE IA+ +FP+G+L K ++ +A +
Sbjct: 142 GHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAED-- 199
Query: 194 PFLGTLET-YKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIG 251
LG + K+S ICF+ E+ + + L +++ + G + + G+ IG H+G M +T+G
Sbjct: 200 --LGLVTAKKKDSTGICFIGERKFREFLGRYLPAQ-PGKIITVDGDEIGEHQGLMYHTLG 256
Query: 252 KRKGFSI----KGALEPHFVVGIDAKKNELVVGKKED---LATHSLKAKNKSLMKDFKDG 304
+RKG I +G EP +VV D + N LVV + + L + L A+ + D
Sbjct: 257 QRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQ----QLHWVDR 312
Query: 305 EYF-------IKARYRSVPAKAHV-SLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGG 356
E F +K RYR V +L D+ IEV F EP V GQ+ V Y ++ LGG
Sbjct: 313 EPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEVCLGG 372
Query: 357 GVI 359
G+I
Sbjct: 373 GII 375
>ref|NP_228330.1| (NC_000853) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermotoga maritima]
sp|Q9WYZ0|TRMU_THEMA Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||F72365 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase -
Thermotoga maritima (strain MSB8)
gb|AAD35605.1|AE001728_6 (AE001728) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermotoga maritima]
Length = 358
Score = 199 bits (507), Expect = 3e-50
Identities = 124/360 (34%), Positives = 195/360 (53%), Gaps = 26/360 (7%)
Query: 19 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIK-------------- 64
MK+ V LSGGVDS+ + Y L ++GHE+ ++K K+ + +IK
Sbjct: 1 MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKT----KEDEFFIKKEIKKKVCCSPSDT 56
Query: 65 -NAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHA 123
+A + FLG+ +E++D ++ F+ V + F +G TPNPCA CN +KFG +D+
Sbjct: 57 ADAMRIAHFLGVEIEIVDVKEIFREKVIEPFKRDLLKGLTPNPCAHCNRFVKFGYLMDYV 116
Query: 124 LKLGCEKIATGHYARVKEIDKI--SYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLL 181
L G + A+GHYAR++ +K I++ +D KDQSYFL +E I +L+FP G
Sbjct: 117 LNQGFDAFASGHYARIEFSEKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIFPNGIYT 176
Query: 182 KKDIKPLALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVE-KEGVVKNLQGEVIG 240
K++I+ +A A + + ESQ++CF+ I+ K + K+G + +GEV+G
Sbjct: 177 KEEIRKIAEEAGIHVAKKQ---ESQDVCFIPDGSIENFLKDEGITLKDGDIITPEGEVVG 233
Query: 241 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKD 300
H GY YTIG+RKGF I+ ++V G +KN +VV ED+ L A++ +
Sbjct: 234 RHFGYPLYTIGQRKGFKIEKFGRRYYVRGKIPEKNVVVVSDLEDVFFSGLIAEDPVWHVE 293
Query: 301 F-KDGEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
++ + R +S A A V +KD +EV F++ + V GQ Y D LLGG +I
Sbjct: 294 VPEEFRCVCRVRKKSEEAPAVVKVKDNEVEVSFEKKVFAVTPGQIAAFYDGDTLLGGAII 353
>ref|NP_646388.1| (NC_003923) (5-methylaminomethyl-2-thiouridylate)-methyltran
sferase [Staphylococcus aureus subsp. aureus MW2]
dbj|BAB95436.1| (AP004827) (5-methylaminomethyl-2-thiouridylate)-methyltran sferase
[Staphylococcus aureus subsp. aureus MW2]
Length = 372
Score = 199 bits (506), Expect = 4e-50
Identities = 127/361 (35%), Positives = 198/361 (54%), Gaps = 28/361 (7%)
Query: 19 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLK----------LHASEKKHDLYIKNAQK 68
+++ V +SGGVDSS +A+ LKEQG++++GI++K A+E +D+ +
Sbjct: 6 IRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCTATEDYNDVI-----E 60
Query: 69 ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 128
C +GIP ++F+K++ V+ F++ Y++G+TPNP +CN +KF LDHA+ LG
Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120
Query: 129 EKIATGHYARV-KEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKP 187
+ +ATGHYAR+ + D + +D KDQ+YFL L + ++K++FP+GD+ K +++
Sbjct: 121 DYVATGHYARIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKIEVRR 180
Query: 188 LALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQ 247
+A L T + K+S ICF+ + T + G + L G+ +G H G M
Sbjct: 181 IA--EEQGLVTAKK-KDSTGICFIGEKNFKTFLSQYLPAQPGDMITLDGKKMGKHSGLMY 237
Query: 248 YTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLM----KD 300
YTIG+R G I G +P FVVG + K N L V + + L + L A + S + D
Sbjct: 238 YTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVNPEDND 297
Query: 301 FKDG-EYFIKARYRSVPAKAHVSLK-DEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGV 358
G E K RYR K V + D + V F EP + GQA+V Y+ D+ LGG
Sbjct: 298 LDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGDVCLGGAT 357
Query: 359 I 359
I
Sbjct: 358 I 358
>ref|NP_287347.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_309632.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG55959.1|AE005329_3 (AE005329) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB35028.1| (AP002555) hypothetical protein [Escherichia coli O157:H7]
Length = 383
Score = 199 bits (506), Expect = 4e-50
Identities = 131/363 (36%), Positives = 204/363 (56%), Gaps = 32/363 (8%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-----IKNAQKACEFLG 74
K+ V +SGGVDSS SA+ L++QG+++ G+++K + + + +AQ C+ LG
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLG 81
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LGCEKIAT 133
I L ++F ++ V++ F+ Y+ G+TPNP LCN +KF L+ A + LG + IAT
Sbjct: 82 IELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIAT 141
Query: 134 GHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAM 193
GHY R ++D S + LD KDQSYFLY L HE IA+ +FP+G+L K ++ +A +
Sbjct: 142 GHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAED-- 199
Query: 194 PFLGTLET-YKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIG 251
LG + K+S ICF+ E+ + + L +++ + G + + G+ IG H+G M +T+G
Sbjct: 200 --LGLVTAKKKDSTGICFIGERKFREFLGRYLPAQ-PGKIITVDGDEIGEHQGLMYHTLG 256
Query: 252 KRKGFSI----KGALEPHFVVGIDAKKNELVVGKKED---LATHSLKAKNKSLMKDFKDG 304
+RKG I +G EP +VV D + N L+V + + L + L A+ + D
Sbjct: 257 QRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQ----QLHWVDR 312
Query: 305 EYF-------IKARYRSVPAKAHV-SLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGG 356
E F +K RYR V +L D+ IEV F EP V GQ+ V Y ++ LGG
Sbjct: 313 EPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEVCLGG 372
Query: 357 GVI 359
G+I
Sbjct: 373 GII 375
>ref|NP_485402.1| (NC_003272) tRNA (5-methylaminomethyl-2-thiouridylate)-methy
ltransferase [Nostoc sp. PCC 7120]
dbj|BAB73316.1| (AP003585) tRNA (5-methylaminomethyl-2-thiouridylate)-methy
ltransferase [Nostoc sp. PCC 7120]
Length = 352
Score = 198 bits (504), Expect = 7e-50
Identities = 135/351 (38%), Positives = 200/351 (56%), Gaps = 17/351 (4%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKH-DLYIKNAQKACEFLGIPLE 78
K+ V LSGGVDSS +A L QG+E++G+ L L + + + +A CE LGIP E
Sbjct: 3 KVVVGLSGGVDSSTAAAILHNQGYEVIGLTLWLMKGKGQCCSEGMIDAAYICEQLGIPHE 62
Query: 79 VLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHAL-KLGCEKIATGHYA 137
V+D + F++ + D + Y G TP PC+ CN +KFG + +A KLGC++IATGHYA
Sbjct: 63 VVDMRDVFQTHIVDYLVTGYGAGITPLPCSQCNKTVKFGPMVQYASEKLGCDRIATGHYA 122
Query: 138 RVKEIDKISYIQ--EALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAMPF 195
R++ + Q A+D+ KDQSYFLY L +++A +FPLG++ K D + +A
Sbjct: 123 RIRYDEATGRYQLLRAVDRNKDQSYFLYDLSQDLLAASLFPLGEMEKADTRRIATE--HG 180
Query: 196 LGTLETYKESQEICFVEK--SYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIGKR 253
L T + ESQ++C VE S L K++ K+G + + G+V+G H G YTIG+R
Sbjct: 181 LKTADK-PESQDLCLVESNGSMRAFLDKYI-APKKGDIVDTAGKVLGQHDGVHHYTIGQR 238
Query: 254 KGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNK----SLMKDFKDGEYFIK 309
KG I A EP +VV +DA N++VVG + AT N+ S+ + ++
Sbjct: 239 KGLGI-AAPEPLYVVELDAVHNKVVVGDRTK-ATQEECTVNRVNWVSIAEPSTPIRAAVQ 296
Query: 310 ARYRSVPAKAHV-SLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
RYRS P V L++ + + F EP + + GQA V Y + +LGGG+I
Sbjct: 297 IRYRSAPEPVTVIPLENSRVRLVFDEPQFSITPGQAAVWYDGNKVLGGGII 347
>ref|NP_230773.1| (NC_002505) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae]
sp|Q9KSX8|TRMU_VIBCH Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||C82237 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase VC1128
[imported] - Vibrio cholerae (group O1 strain N16961)
gb|AAF94287.1| (AE004193) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae]
Length = 372
Score = 198 bits (504), Expect = 7e-50
Identities = 133/374 (35%), Positives = 209/374 (55%), Gaps = 28/374 (7%)
Query: 8 LRAITHNERLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY----- 62
+ ++ H+ + K+ V +SGGVDSS SAY LK+QG+++ G+++K + E ++ Y
Sbjct: 1 MMSVEHSANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK-NWEEDDNEEYCTAAE 59
Query: 63 -IKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALD 121
+ +AQ C+ LGIPL ++F ++ V++ F+ Y+ G+TPNP LCN +KF L+
Sbjct: 60 DLADAQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLE 119
Query: 122 HALK-LGCEKIATGHYAR--VKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLG 178
A + L + IA GHY R + + + LD KDQSYFLY L HE +A+ +FP+G
Sbjct: 120 FADEVLDADYIAMGHYVRRTFPQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARTLFPVG 179
Query: 179 DLLKKDIKPLALNAMPFLGTLET-YKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQG 236
+L K +++ +A G + K+S ICF+ E+ + D L +++ + G ++ +G
Sbjct: 180 ELEKPEVRRIAEEQ----GLITAKKKDSTGICFIGERKFTDFLSRYLPAQ-PGKIETPEG 234
Query: 237 EVIGTHKGYMQYTIGKRKGFSIKGALE----PHFVVGIDAKKNELVVGKKED---LATHS 289
+VIG H+G M +T+G+RKG I G E P +V D K+N L+ + D L +H
Sbjct: 235 KVIGEHQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHG 294
Query: 290 LKAKNKSLMKDFKDGE---YFIKARYR-SVPAKAHVSLKDEVIEVGFKEPFYGVAKGQAL 345
L A + E +K RYR S A + L D+ I+V F EP V GQ+
Sbjct: 295 LVAAQLHWVDRTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSA 354
Query: 346 VVYKDDILLGGGVI 359
V Y+ +I LGGG+I
Sbjct: 355 VFYQGEICLGGGII 368
>ref|NP_246275.1| (NC_002663) unknown [Pasteurella multocida]
sp|Q9CLA3|TRMU_PASMU Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
gb|AAK03420.1| (AE006172) unknown [Pasteurella multocida]
Length = 383
Score = 198 bits (504), Expect = 7e-50
Identities = 128/365 (35%), Positives = 200/365 (54%), Gaps = 26/365 (7%)
Query: 15 ERLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-----IKNAQKA 69
E K K+ +SGGVDSS SA+ L++QG+++ G+++K + D + +AQ
Sbjct: 20 ENRKKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDYCTAAADLADAQAV 79
Query: 70 CEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LGC 128
C+ LGI L ++F ++ V++ F+ Y+ G+TPNP LCN +KF LD+A + LG
Sbjct: 80 CDKLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCNKEIKFKAFLDYAAEDLGA 139
Query: 129 EKIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPL 188
+ IATGHY R E D + LD KDQSYFLY L + +A+ +FP+G++ K ++ +
Sbjct: 140 DYIATGHYVRRGEKDGQCQLLRGLDNNKDQSYFLYTLSKDQVAQSLFPVGEIEKPIVRAI 199
Query: 189 ALNAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQ 247
A + L T + K+S ICF+ E+ + D L +++ + G ++ ++G+V+G H G M
Sbjct: 200 AEDL--GLATAKK-KDSTGICFIGERKFKDFLARYLPAQ-PGEIRTVEGKVVGRHDGLMY 255
Query: 248 YTIGKRKGFSIKGAL----EPHFVVGIDAKKNELVVGKKED--------LATHSLKAKNK 295
+T+G+RKG I G +P +VV D N LVV + D L L ++
Sbjct: 256 HTLGQRKGLGIGGVKGMGEDPFYVVEKDLVNNVLVVAQGHDNSALLSSGLIASQLHWVDR 315
Query: 296 SLMKDFKDGEYFIKARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDILL 354
++ + +K RYR + + DE I V F EP V GQ+ V Y+ +I L
Sbjct: 316 QPIR--QPVRCTVKTRYRQEDIPCEIQPINDETIRVVFDEPQIAVTPGQSAVFYQGEICL 373
Query: 355 GGGVI 359
GGGVI
Sbjct: 374 GGGVI 378
>ref|NP_251316.1| (NC_002516) tRNA methyltransferase [Pseudomonas aeruginosa]
sp|Q9I0L2|TRMU_PSEAE Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||C83317 tRNA methyltransferase PA2626 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG06014.1|AE004691_5 (AE004691) tRNA methyltransferase [Pseudomonas aeruginosa]
Length = 375
Score = 197 bits (502), Expect = 1e-49
Identities = 127/356 (35%), Positives = 199/356 (55%), Gaps = 20/356 (5%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-----IKNAQKACEFLG 74
++ V +SGGVDSS SA L +QG+++ G+++K + + + +AQ C+ +G
Sbjct: 12 RVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTEYCTAREDLADAQAVCDRIG 71
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATG 134
I L +F ++ V++ F+ Y+ G+TPNP LCN +KF LD+AL LG + IATG
Sbjct: 72 IKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIATG 131
Query: 135 HYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAMP 194
HY R ++ D + + + LD KDQSYFL+A+ E IA+ +FP+G+L K +++ +A
Sbjct: 132 HYVRRRDRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGELEKPEVRAIA--EKH 189
Query: 195 FLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIGKR 253
L T + K+S ICF+ E+ + D LK+++ + G ++ +G+VIG H G M +TIG+R
Sbjct: 190 GLATAKK-KDSTGICFIGERRFTDFLKQYLPAQ-PGDIETTEGKVIGRHSGLMYHTIGQR 247
Query: 254 KGFSIKGALE----PHFVVGIDAKKNELVVGKKED---LATHSLKAKNKSLMKDF---KD 303
+G I G E P +V+G D ++N L+VG+ D L + +L A + +
Sbjct: 248 QGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVELERP 307
Query: 304 GEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
K RYR + E F EP V GQ++V Y D+ LGGGVI
Sbjct: 308 RRLRAKVRYRQSDQDCVLEKTAEGYRAVFDEPQRAVTPGQSVVFYDGDVCLGGGVI 363
>ref|NP_460204.1| (NC_003197) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella typhimurium LT2]
gb|AAL20163.1| (AE008754) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella typhimurium LT2]
Length = 383
Score = 197 bits (500), Expect = 2e-49
Identities = 129/363 (35%), Positives = 204/363 (55%), Gaps = 32/363 (8%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-----IKNAQKACEFLG 74
K+ V +SGGVDSS SA+ L++QG+++ G+++K + + + +AQ C+ LG
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLG 81
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LGCEKIAT 133
I L ++F ++ V++ F+ Y+ G+TPNP LCN +KF L+ A + LG + IAT
Sbjct: 82 IELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIAT 141
Query: 134 GHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAM 193
GHY R +++ S + LD KDQSYFLY L HE IA+ +FP+G+L K ++ +A +
Sbjct: 142 GHYVRRADVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQVRKIAED-- 199
Query: 194 PFLGTLET-YKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIG 251
LG + K+S ICF+ E+ + D L +++ + G + + G+ IG H+G M +T+G
Sbjct: 200 --LGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQ-PGKIITVDGDEIGEHQGLMYHTLG 256
Query: 252 KRKGFSI----KGALEPHFVVGIDAKKNELVVGKKED---LATHSLKAKNKSLMKDFKDG 304
+RKG I G+ +P +VV D + N L+V + + L + L A+ + D
Sbjct: 257 QRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLIAQ----QLHWVDR 312
Query: 305 EYF-------IKARYRSVPAKAHV-SLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGG 356
E F +K RYR + +L D+ IEV F EP V GQ+ V Y ++ LGG
Sbjct: 313 EPFTGTLRCTVKTRYRQTDIPCTINALNDDRIEVIFDEPVAAVTPGQSAVFYSGEVCLGG 372
Query: 357 GVI 359
G+I
Sbjct: 373 GII 375
>ref|NP_455726.1| (NC_003198) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Typhi]
emb|CAD08358.1| (AL627269) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Typhi]
Length = 368
Score = 196 bits (499), Expect = 3e-49
Identities = 129/363 (35%), Positives = 204/363 (55%), Gaps = 32/363 (8%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-----IKNAQKACEFLG 74
K+ V +SGGVDSS SA+ L++QG+++ G+++K + + + +AQ C+ LG
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLG 66
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LGCEKIAT 133
I L ++F ++ V++ F+ Y+ G+TPNP LCN +KF L+ A + LG + IAT
Sbjct: 67 IELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIAT 126
Query: 134 GHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAM 193
GHY R +++ S + LD KDQSYFLY L HE IA+ +FP+G+L K ++ +A +
Sbjct: 127 GHYVRRADVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQVRKIAED-- 184
Query: 194 PFLGTLET-YKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIG 251
LG + K+S ICF+ E+ + D L +++ + G + + G+ IG H+G M +T+G
Sbjct: 185 --LGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQ-PGKIITVDGDEIGEHQGLMYHTLG 241
Query: 252 KRKGFSI----KGALEPHFVVGIDAKKNELVVGKKED---LATHSLKAKNKSLMKDFKDG 304
+RKG I G+ +P +VV D + N L+V + + L + L A+ + D
Sbjct: 242 QRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLIAQ----QLHWVDR 297
Query: 305 EYF-------IKARYRSVPAKAHV-SLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGG 356
E F +K RYR + +L D+ IEV F EP V GQ+ V Y ++ LGG
Sbjct: 298 EPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQSAVFYSGEVCLGG 357
Query: 357 GVI 359
G+I
Sbjct: 358 GII 360
>ref|NP_220690.1| (NC_000963) unknown [Rickettsia prowazekii]
sp|Q9ZDM1|TRMU_RICPR Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||E71686 hypothetical protein RP306 - Rickettsia prowazekii
emb|CAA14767.1| (AJ235271) unknown [Rickettsia prowazekii]
Length = 358
Score = 196 bits (499), Expect = 3e-49
Identities = 135/356 (37%), Positives = 190/356 (52%), Gaps = 23/356 (6%)
Query: 21 IAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLH----ASEKKH------DLYIKNAQKAC 70
I V +SGGVDSS A L EQGH ++GI L+L+ A KK+ D+Y +A+
Sbjct: 4 IVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDYGIAVGKKNACCAGQDIY--DAKMVA 61
Query: 71 EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 130
LGIP VLD++ FK +V D F+++Y G+TP PC CN +KF ++ A +LG +K
Sbjct: 62 NKLGIPHYVLDYENKFKESVIDNFVDSYLHGETPLPCVQCNKSVKFRDLINTAKELGADK 121
Query: 131 IATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLAL 190
+ATGHY R + + LD TKDQSYFL+ + E + L FPLG K + + L
Sbjct: 122 LATGHYVRKINGYNGAELHTGLDTTKDQSYFLFTITREQLEYLSFPLGGFTKYETRKL-- 179
Query: 191 NAMPFLGTLETYKESQEICFVEKSYIDTL--KKHVEVEKEGVVKNLQGEVIGTHKGYMQY 248
A F + +SQ+ICFV T+ K E G + ++ G +G H G + Y
Sbjct: 180 -ASKFGLDIADKPDSQDICFVPDGNYKTVINKIRPEANTSGKIVHINGFELGEHSGIINY 238
Query: 249 TIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKD-FKDGEYF 307
TIG+R+G I EP +VV ID N + VG++ L H K+ + + D KD E
Sbjct: 239 TIGQRRGLGI-AYNEPLYVVKIDPSNNIVYVGQESALHVHEFIIKDVNWLADEIKDHEKL 297
Query: 308 ---IKARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
+K R P A +S L ++ I+V F VA GQA V+Y + +LGGG I
Sbjct: 298 AVDVKIRSTRPPCHAEISKLCNDRIKVKFLSKEKAVAPGQACVIYAGERVLGGGWI 353
>ref|NP_520844.1| (NC_003295) PROBABLE TRNA
5-METHYLAMINOMETHYL-2-THIOURIDYLATE-METHYLTRANSFERASE
PROTEIN [Ralstonia solanacearum]
emb|CAD16430.1| (AL646071) PROBABLE TRNA
5-METHYLAMINOMETHYL-2-THIOURIDYLATE-METHYLTRANSFERASE
PROTEIN [Ralstonia solanacearum]
Length = 370
Score = 196 bits (498), Expect = 3e-49
Identities = 122/359 (33%), Positives = 196/359 (53%), Gaps = 25/359 (6%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIKNAQ------KACEFL 73
++ V +SGGVDSS +A+ LK+QG+E++G+++K + + Y Q + +
Sbjct: 5 RVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE-YCSTRQDWIDVVSVADLI 63
Query: 74 GIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIAT 133
G+ +E ++F ++K V+ +F+ Y G+TPNP LCN +KF LDHA+ LG + IAT
Sbjct: 64 GVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTIAT 123
Query: 134 GHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALN-A 192
GHYARV+E + +A D TKDQSYFL+ L +++ +FPLG++ K ++ +A
Sbjct: 124 GHYARVREAGGRFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKTRVREIAAEIG 183
Query: 193 MPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIG 251
+P K+S ICF+ E+ + D L +++ K G ++ G+ IG H G YT+G
Sbjct: 184 LP----NARKKDSTGICFIGERPFRDFLNRYLPT-KPGPIRTPDGKTIGQHIGLAFYTLG 238
Query: 252 KRKGFSIKGALEPH----FVVGIDAKKNELVVGKKED---LATHSLKAKNKSLMKDFKDG 304
+RKG I G+ + + +V D N L V + D L H++ A + S +
Sbjct: 239 QRKGIGIGGSRDGNGDAWYVARKDMAANTLYVAQGHDHPWLLAHTVHADDLSWVAGHPPA 298
Query: 305 E---YFIKARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
E K RYR A V+ + + + F++ + V GQ+ V+Y DI LGGG+I
Sbjct: 299 EGTQLAAKTRYRQADAPCAVTRATGDALTLTFQQAQWAVTPGQSAVLYDGDICLGGGII 357
>ref|NP_270096.1| (NC_002737) putative tRNA-(5-methylaminomethyl-2-thiouridylate)
[Streptococcus pyogenes] [Streptococcus pyogenes M1 GAS]
sp|P58075|TRMU_STRPY Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
gb|AAK34817.1| (AE006636) putative tRNA-(5-methylaminomethyl-2-thiouridylate)
[Streptococcus pyogenes M1 GAS]
Length = 373
Score = 196 bits (497), Expect = 5e-49
Identities = 127/359 (35%), Positives = 198/359 (54%), Gaps = 21/359 (5%)
Query: 18 KMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYI-----KNAQKACEF 72
K+++ V +SGGVDSS +A LKEQG++++G+++K + + K+ +
Sbjct: 6 KIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCTATEDYKDVAAVADK 65
Query: 73 LGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIA 132
+GIP ++F+K++ V++ F+ Y G+TPNP +CN +KF LD+A+ LG + +A
Sbjct: 66 IGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYVA 125
Query: 133 TGHYARVKEIDK-ISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALN 191
TGHYA+VK + ++ D KDQ+YFL L E + K +FPLG L K +++ +A
Sbjct: 126 TGHYAQVKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEVREIAER 185
Query: 192 AMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTI 250
A L T + K+S ICF+ EK++ L +++ +K G + + G +G H G M YTI
Sbjct: 186 A--GLATAKK-KDSTGICFIGEKNFKQFLSQYLPAQK-GRMMTIDGRDMGEHAGLMYYTI 241
Query: 251 GKRKGFSIKGA----LEPHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLMKDFKD 303
G+R G I G +P FVVG D +N L VG+ E L ++SL A ++ +
Sbjct: 242 GQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTREMPE 301
Query: 304 G---EYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
E K RYR + V ++ + EV F EP + GQA+V Y LGGG+I
Sbjct: 302 EFTFECTAKFRYRQPDSHVAVHVRGDKAEVVFAEPQRAITPGQAVVFYDGKECLGGGMI 360
>ref|NP_608157.1| (NC_003485) tRNA-methyltransferase [Streptococcus pyogenes
MGAS8232]
gb|AAL98656.1| (AE010122) tRNA-methyltransferase [Streptococcus pyogenes MGAS8232]
Length = 379
Score = 194 bits (492), Expect = 2e-48
Identities = 126/359 (35%), Positives = 198/359 (55%), Gaps = 21/359 (5%)
Query: 18 KMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYI-----KNAQKACEF 72
K+++ V +SGGVDSS +A LKEQG++++G+++K + + K+ +
Sbjct: 12 KIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCTATEDYKDVAAVADQ 71
Query: 73 LGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIA 132
+GIP ++F+K++ V++ F+ Y G+TPNP +CN +KF L +A+ LG + +A
Sbjct: 72 IGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLGYAMTLGADYVA 131
Query: 133 TGHYARVKEIDK-ISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALN 191
TGHYA+VK + ++ D KDQ+YFL L E + K +FPLG L K +++ +A
Sbjct: 132 TGHYAQVKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEVREIAER 191
Query: 192 AMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTI 250
A L T + K+S ICF+ EK++ L +++ +K G + + G +G H G M YTI
Sbjct: 192 A--GLATAKK-KDSTGICFIGEKNFKQFLSQYLPAQK-GRMMTIDGRDMGEHAGLMYYTI 247
Query: 251 GKRKGFSIKGA----LEPHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLMKDFKD 303
G+R G I G +P FVVG D +N L VG+ E L ++SL A ++ +
Sbjct: 248 GQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTREMPE 307
Query: 304 G---EYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
E K RYR ++ V ++ + EV F EP + GQA+V Y LGGG+I
Sbjct: 308 EFTFECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFYDGKECLGGGMI 366
>ref|NP_623990.1| (NC_003869) predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Thermoanaerobacter tengcongensis]
gb|AAM25594.1| (AE013188) predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Thermoanaerobacter tengcongensis]
Length = 364
Score = 191 bits (486), Expect = 9e-48
Identities = 122/360 (33%), Positives = 203/360 (55%), Gaps = 26/360 (7%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIK----------NAQKA 69
++ V +SGGVDSS +AY LKEQG+E++G+ +++ + + + ++ +A++
Sbjct: 6 RVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEGGCCSLAAVNDARRV 65
Query: 70 CEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCE 129
+GI V++F+ FK V D F++ Y G+TPNPC CN +KF L A +
Sbjct: 66 ANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWMIDAY 125
Query: 130 KIATGHYARVKEIDKIS---YIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIK 186
+ATGHYA +KE D+ +++++D +KDQ+Y LY L + ++FPLG K ++
Sbjct: 126 YVATGHYA-IKEYDEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKYKKDKVR 184
Query: 187 PLALNAMPFLG-TLETYKESQEICFV-EKSYIDTLKKHVEVE-KEGVVKNLQGEVIGTHK 243
LA N LG + + +SQEICFV + Y ++++ + E K G ++ +G +G HK
Sbjct: 185 ELAKN----LGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGYHK 240
Query: 244 GYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMK-DFK 302
G + YTIG+RKG I +P +VV IDA+ N +V+G +++ L + N + + D
Sbjct: 241 GIIHYTIGQRKGLGISVG-KPLYVVDIDAENNVVVLGYGDEVYGDELISYNNNFISIDKL 299
Query: 303 DGEYFIKARYRSVPAKAHV---SLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
+ E +KA+ R + L+D + V F P + GQ++V Y DI++GGG+I
Sbjct: 300 EKEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRAITPGQSVVFYDGDIVVGGGII 359
>ref|NP_266993.1| (NC_002662) tRNA-methyltransferase [Lactococcus lactis subsp.
lactis]
gb|AAK04935.1|AE006317_4 (AE006317) tRNA-methyltransferase [Lactococcus lactis subsp.
lactis]
Length = 384
Score = 191 bits (485), Expect = 1e-47
Identities = 123/358 (34%), Positives = 196/358 (54%), Gaps = 22/358 (6%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYI-----KNAQKACEFLG 74
++ V +SGGVDSS +A LKEQG++++G+++K ++ + K+ + +G
Sbjct: 18 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDENGVCTATEDYKDVAAVADQIG 77
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATG 134
+P ++F+K++ V++ F+ Y G+TPNP +CN +KF LD+A++LG + +ATG
Sbjct: 78 VPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMELGADYVATG 137
Query: 135 HYARVK-EIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAM 193
HYA+V+ + + I ++ D KDQ+YFL L E + K +FPLG L K +++ +A A
Sbjct: 138 HYAQVRTDENGIVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHLEKPEVRKIAEKA- 196
Query: 194 PFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIGK 252
L T + K+S ICF+ EK++ L +++ + G + L G +G H G M YTIG+
Sbjct: 197 -GLATAKK-KDSTGICFIGEKNFKKFLGEYLPAQ-PGKMMTLDGIEMGNHAGLMYYTIGQ 253
Query: 253 RKGFSIKG-----ALEPHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLMKDFK-- 302
R G I G +P FVVG D N L VG+ E L + SL A + S ++
Sbjct: 254 RGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVGQGFHHEHLYSTSLDASDLSFTREMPET 313
Query: 303 -DGEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
D K RYR + + + + V F EP + GQA+V Y + LGG +I
Sbjct: 314 FDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVVFYDGEECLGGAMI 371
>sp|Q9CHA1|TRMU_LACLA Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
Length = 376
Score = 191 bits (485), Expect = 1e-47
Identities = 123/358 (34%), Positives = 196/358 (54%), Gaps = 22/358 (6%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYI-----KNAQKACEFLG 74
++ V +SGGVDSS +A LKEQG++++G+++K ++ + K+ + +G
Sbjct: 10 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDENGVCTATEDYKDVAAVADQIG 69
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATG 134
+P ++F+K++ V++ F+ Y G+TPNP +CN +KF LD+A++LG + +ATG
Sbjct: 70 VPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMELGADYVATG 129
Query: 135 HYARVK-EIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAM 193
HYA+V+ + + I ++ D KDQ+YFL L E + K +FPLG L K +++ +A A
Sbjct: 130 HYAQVRTDENGIVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHLEKPEVRKIAEKA- 188
Query: 194 PFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIGK 252
L T + K+S ICF+ EK++ L +++ + G + L G +G H G M YTIG+
Sbjct: 189 -GLATAKK-KDSTGICFIGEKNFKKFLGEYLPAQ-PGKMMTLDGIEMGNHAGLMYYTIGQ 245
Query: 253 RKGFSIKG-----ALEPHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLMKDFK-- 302
R G I G +P FVVG D N L VG+ E L + SL A + S ++
Sbjct: 246 RGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVGQGFHHEHLYSTSLDASDLSFTREMPET 305
Query: 303 -DGEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
D K RYR + + + + V F EP + GQA+V Y + LGG +I
Sbjct: 306 FDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVVFYDGEECLGGAMI 363
>ref|NP_360047.1| (NC_003103) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[EC:2.1.1.61] [Rickettsia conorii]
sp|Q92IL0|TRMU_RICCN Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
gb|AAL02948.1| (AE008605) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[EC:2.1.1.61] [Rickettsia conorii]
Length = 370
Score = 191 bits (485), Expect = 1e-47
Identities = 134/358 (37%), Positives = 193/358 (53%), Gaps = 27/358 (7%)
Query: 21 IAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLH----ASEKKH------DLYIKNAQKAC 70
I V +SGGVDSS A L EQGH ++GI L+L+ A KK+ D+Y +A+
Sbjct: 16 IVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIY--DAKMVA 73
Query: 71 EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 130
LGIP VLD++ FK +V D F+++Y +G+TP PC CN +KF + A +LG +K
Sbjct: 74 NKLGIPHYVLDYENKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGADK 133
Query: 131 IATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLAL 190
+ATGHY R D + + LD KDQSYFL+ E + L FPLG L K + + L
Sbjct: 134 LATGHYVRKINGDNGAELHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKDETRKL-- 191
Query: 191 NAMPFLGTLETYKESQEICFVE----KSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYM 246
A F + +SQ+ICF+ KS I+ ++ + + G + ++ G +G H G +
Sbjct: 192 -ASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPN--SSESGKIIHVNGFELGEHSGII 248
Query: 247 QYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKD-FKDGE 305
YTIG+R+G I EP +VV ID K N + VG + L ++ + + D KD E
Sbjct: 249 NYTIGQRRGLGI-AYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDNE 307
Query: 306 YF---IKARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
+K R P A +S L D+ ++V F VA GQA V+Y + +LGGG I
Sbjct: 308 KLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCEEKAVAPGQACVIYAGERVLGGGWI 365
>ref|NP_104070.1| (NC_002678) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mesorhizobium loti]
dbj|BAB49856.1| (AP003000) tRNA (5-methylaminomethyl-2-thiouridylate)-methy
ltransferase [Mesorhizobium loti]
Length = 378
Score = 190 bits (483), Expect = 2e-47
Identities = 129/357 (36%), Positives = 188/357 (52%), Gaps = 27/357 (7%)
Query: 25 LSGGVDSSYSAYSLKEQGHELVGIYLKLH--------ASEKKHDLYIKNAQKACEFLGIP 76
+SGGVDSS A LK +G+++VG+ L+L+ A I +A++ E LGIP
Sbjct: 1 MSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCCAGQDIDDARRVSETLGIP 60
Query: 77 LEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATGHY 136
VLD+++ F+ AV D F +Y G+TP PC CN +KF L A +LG + +ATGHY
Sbjct: 61 HYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFADLLATAKELGADALATGHY 120
Query: 137 ARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAMPFL 196
R + +D +DQSYFL+A I L FPLG L K ++ +A +
Sbjct: 121 IRSGANGAHRALYRPVDADRDQSYFLFATTQAQIDYLRFPLGGLSKPQVRAIAEE----M 176
Query: 197 G-TLETYKESQEICFV-EKSYIDTLKK-HVEVEKEGVVKNLQGEVIGTHKGYMQYTIGKR 253
G T+ ++SQ+ICFV + Y D + K G + ++ G V+G H+G ++YTIG+R
Sbjct: 177 GLTVAAKQDSQDICFVPQGKYSDIIAKLKPAAANPGDIVHIDGRVLGRHEGILRYTIGQR 236
Query: 254 KGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDFKDG-------EY 306
+G I EP +VV +DA++ +VVG +E L TH + +N + + D G E
Sbjct: 237 RGIGIASG-EPLYVVHLDAERARVVVGPREALETHKIYLRNMNWLGDGPLGDIPEGGLEL 295
Query: 307 FIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDD----ILLGGGVI 359
F K R P A + V V + G+A GQA V+Y DD + GGG I
Sbjct: 296 FAKVRSTRPPRPAVLRYVAGVTSVELADGESGIAPGQACVLYSDDGNEARVFGGGFI 352
>ref|NP_438342.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
pir||D64144 probable ATPase HI0174 - Haemophilus influenzae (strain Rd KW20)
gb|AAC21843.1| (U32702) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 418
Score = 189 bits (480), Expect = 4e-47
Identities = 123/359 (34%), Positives = 196/359 (54%), Gaps = 24/359 (6%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-----IKNAQKACEFLG 74
K+ +SGGVDSS SA+ L++QG+++ G+++K + D + +AQ C+ LG
Sbjct: 61 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDYCTAAADLADAQAVCDKLG 120
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LGCEKIAT 133
I L ++F ++ V++ F+ Y+ G+TPNP LCN +KF L++A + LG + IAT
Sbjct: 121 IKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADYIAT 180
Query: 134 GHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAM 193
GHY R ++ + + LD KDQSYFLY L H+ + + +FP+G++ K ++ +A +
Sbjct: 181 GHYVRRAGDNENAKLLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIVRAIAED-- 238
Query: 194 PFLGTLET-YKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIG 251
LG + K+S ICF+ E+ + D L +++ + G ++ + E+IG H G M +T+G
Sbjct: 239 --LGLITAKKKDSTGICFIGERKFKDFLARYLPAQ-PGNIRTVDDEIIGRHDGLMYHTLG 295
Query: 252 KRKGFSIKGAL----EPHFVVGIDAKKNELVVGKKED---LATHSLKAKNKSLMKDFKDG 304
+RKG I G E +VV D + NEL+V + D L + L A +
Sbjct: 296 QRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPRLFSKGLIASQLHWVDREPIR 355
Query: 305 EYF---IKARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
E +K RYR + + DE I V F EP V GQ+ V Y ++ LGGG+I
Sbjct: 356 ESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYLGEVCLGGGII 414
>sp|P44551|TRMU_HAEIN Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
Length = 383
Score = 189 bits (480), Expect = 4e-47
Identities = 123/359 (34%), Positives = 196/359 (54%), Gaps = 24/359 (6%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-----IKNAQKACEFLG 74
K+ +SGGVDSS SA+ L++QG+++ G+++K + D + +AQ C+ LG
Sbjct: 26 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDYCTAAADLADAQAVCDKLG 85
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LGCEKIAT 133
I L ++F ++ V++ F+ Y+ G+TPNP LCN +KF L++A + LG + IAT
Sbjct: 86 IKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADYIAT 145
Query: 134 GHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAM 193
GHY R ++ + + LD KDQSYFLY L H+ + + +FP+G++ K ++ +A +
Sbjct: 146 GHYVRRAGDNENAKLLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIVRAIAED-- 203
Query: 194 PFLGTLET-YKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIG 251
LG + K+S ICF+ E+ + D L +++ + G ++ + E+IG H G M +T+G
Sbjct: 204 --LGLITAKKKDSTGICFIGERKFKDFLARYLPAQ-PGNIRTVDDEIIGRHDGLMYHTLG 260
Query: 252 KRKGFSIKGAL----EPHFVVGIDAKKNELVVGKKED---LATHSLKAKNKSLMKDFKDG 304
+RKG I G E +VV D + NEL+V + D L + L A +
Sbjct: 261 QRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPRLFSKGLIASQLHWVDREPIR 320
Query: 305 EYF---IKARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
E +K RYR + + DE I V F EP V GQ+ V Y ++ LGGG+I
Sbjct: 321 ESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYLGEVCLGGGII 379
>ref|NP_539345.1| (NC_003317) TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)
-METHYLTRANSFERASE [Brucella melitensis]
gb|AAL51609.1| (AE009485) TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)
-METHYLTRANSFERASE [Brucella melitensis]
Length = 398
Score = 188 bits (478), Expect = 7e-47
Identities = 128/362 (35%), Positives = 189/362 (51%), Gaps = 27/362 (7%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLH--------ASEKKHDLYIKNAQKACE 71
++ V +SGGVDSS A LK +G+++VG+ L+L+ A I++A++ E
Sbjct: 16 RVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSCCAGQDIEDARRVSE 75
Query: 72 FLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKI 131
LGIP VLD++ F+ AV D F N+Y G+TP PC CN +KF L A LG + +
Sbjct: 76 SLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFADLLQTARDLGADAL 135
Query: 132 ATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALN 191
ATGHY R + + +D +DQSYFL+A E I L FPLG L K ++ +A
Sbjct: 136 ATGHYIRSRANGAHRALYRPVDTDRDQSYFLFATTQEQIDYLRFPLGHLPKAQVREIAEE 195
Query: 192 AMPFLG-TLETYKESQEICFV-EKSYIDTLKK-HVEVEKEGVVKNLQGEVIGTHKGYMQY 248
LG T+ ++SQ+ICFV + Y D + + E G + ++ G +G H G + Y
Sbjct: 196 ----LGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVHIDGRTLGRHDGIVHY 251
Query: 249 TIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDF------K 302
T+G+R+G + E +VV +DA ++VG +E L TH + ++ + + D K
Sbjct: 252 TVGQRRGIGVATG-EALYVVHLDAANARVIVGPREALETHKVFLRDVNWLGDTPIADLPK 310
Query: 303 DG-EYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDD----ILLGGG 357
G E F K R P A + D V + G+A GQA V+Y DD + GGG
Sbjct: 311 SGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLYSDDSNAACVFGGG 370
Query: 358 VI 359
I
Sbjct: 371 FI 372
>ref|NP_600463.1| (NC_003450) COG0482:Predicted
tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Corynebacterium glutamicum]
dbj|BAB98633.1| (AP005277) Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Corynebacterium glutamicum ATCC 13032]
Length = 365
Score = 186 bits (472), Expect = 4e-46
Identities = 120/364 (32%), Positives = 187/364 (50%), Gaps = 27/364 (7%)
Query: 19 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIK---------NAQKA 69
M++ +SGGVDS+ +A GHE+VG++L L + + +A++
Sbjct: 1 MRVLAAMSGGVDSAVAASRAVAAGHEVVGVHLALSQDPQTVRESSRGCCSLEDSADARRV 60
Query: 70 CEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCE 129
C+ LGIP V DF FK V D FI++Y G+TPNPC CN +KF L+ + LG +
Sbjct: 61 CDKLGIPFYVWDFSDRFKEDVIDNFIDSYAIGETPNPCLRCNEKIKFAALLERGIALGFD 120
Query: 130 KIATGHYARVKE--IDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKP 187
+ TGHYAR+ + Y++ +D KDQSY L L I +FP+GD +K +I+
Sbjct: 121 AVVTGHYARLTQPADGGDGYLRRGVDPNKDQSYVLGVLGAHEIEHCMFPVGDTIKPEIRE 180
Query: 188 LALNAMPFLGTLETYKESQEICFVEKSYIDT-LKKHVEVEKEGVVKNLQGEVIGTHKGYM 246
A +A F ++ +S +ICF+ L KH+ + + G++ + +G + H G
Sbjct: 181 EA-SAAGF--SVAKKPDSYDICFIPDGNTQAFLGKHIGM-RPGMIVDQEGTQLREHAGVH 236
Query: 247 QYTIGKRKGFSIKGAL---EPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDFKD 303
++TIG+RKG IK P +V IDAK + VG +E+L ++ A + D
Sbjct: 237 EFTIGQRKGLDIKAPAADGRPRYVTDIDAKTGTVTVGTRENLKISTIHADRLKFLHPAMD 296
Query: 304 GEYFIKARYRS----VPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVY----KDDILLG 355
G+ + + R+ V A + + + + EP GVA+GQA V+Y DI+LG
Sbjct: 297 GQIDCEVQVRAHGGVVSCSATIDRDADFMVLNLNEPLQGVARGQAAVLYLPDADGDIVLG 356
Query: 356 GGVI 359
G I
Sbjct: 357 SGTI 360
>ref|NP_419714.1| (NC_002696) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Caulobacter crescentus CB15]
sp|P58074|TRMU_CAUCR Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
gb|AAK22882.1| (AE005766) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Caulobacter crescentus CB15]
Length = 383
Score = 184 bits (468), Expect = 1e-45
Identities = 135/366 (36%), Positives = 197/366 (52%), Gaps = 32/366 (8%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLH----ASEKKHDLY----IKNAQKACE 71
+I +SGGVDS+ +A L G+++VG+ L+L+ A +K I +A+ A E
Sbjct: 12 RIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAISRKGACCAGQDILDARMAAE 71
Query: 72 FLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKI 131
+GIP VLD++ F+ V ++F +AY G+TP PC CN +KF LD A LG E +
Sbjct: 72 RIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLGAEAM 131
Query: 132 ATGHY---ARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPL 188
ATGHY A ++ A D KDQSYFL+A E + L FPLG + K ++ +
Sbjct: 132 ATGHYVQRAMPGNGGNRPELRRAADPAKDQSYFLFATTREQLDFLRFPLGGMDKPTVRAV 191
Query: 189 ALNAMPFLG-TLETYKESQEICFVEKSYIDTLKKHVEVE--KEGVVKNLQGEVIGTHKGY 245
A LG ++ +SQ+ICFV + T+ + + + G V +L G V+G H+G
Sbjct: 192 AAG----LGLSIADKPDSQDICFVPEGKYTTVIDRIRPQGAEAGDVVHLDGRVLGRHEGV 247
Query: 246 MQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAK-------NKSLM 298
+YTIG+R+G +I +P FVV I+A K +++VG +E L T SL K SL
Sbjct: 248 TRYTIGQRRGLNI-AVGDPLFVVKINADKRQVIVGPREALLTASLTLKEGSWLGAQDSLE 306
Query: 299 KDFKDGEYFIKARYRSV--PAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVY---KDDIL 353
+DG+ + AR RS P +++ D + V F GVA GQA V+Y D +
Sbjct: 307 AAAEDGQR-VLARVRSTREPVPGRLAMIDGALSVVFDGAEEGVAPGQACVLYDPADPDRV 365
Query: 354 LGGGVI 359
LGGG I
Sbjct: 366 LGGGFI 371
>ref|NP_386819.1| (NC_003047) PUTATIVE TRNA
5-METHYLAMINOMETHYL-2-THIOURIDYLATE-METHYLTRANSFERASE
PROTEIN [Sinorhizobium meliloti]
emb|CAC47292.1| (AL591791) PUTATIVE TRNA
5-METHYLAMINOMETHYL-2-THIOURIDYLATE-METHYLTRANSFERASE
PROTEIN [Sinorhizobium meliloti]
Length = 398
Score = 184 bits (467), Expect = 1e-45
Identities = 132/367 (35%), Positives = 192/367 (51%), Gaps = 32/367 (8%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLH--------ASEKKHDLYIKNAQKACE 71
++ V +SGGVDSS A LK +G++++GI L+L+ A I +A++ CE
Sbjct: 14 RVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCCAGQDIDDARRVCE 73
Query: 72 FLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKI 131
+GIP VLD++ F+ V + F +Y G+TP PC CN +KF L A +LG + +
Sbjct: 74 TIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFADLLATAKELGADAL 133
Query: 132 ATGHYARVKEIDKISYI-QEAL----DKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIK 186
ATGHY R + K Y Q AL D +DQSYFL+A E I L FPLG L K + +
Sbjct: 134 ATGHYIRSRPSPKPRYAGQRALYRPADAERDQSYFLFATTQEQIDYLRFPLGGLPKSETR 193
Query: 187 PLALNAMPFLGTLETYK-ESQEICFV-EKSYIDTLKK-HVEVEKEGVVKNLQGEVIGTHK 243
LA +G + K +SQ+ICFV + Y D + K G + +L G V+G H+
Sbjct: 194 ALAEE----MGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALAGEIVHLDGRVLGAHE 249
Query: 244 GYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKD--- 300
G + YTIG+R+G + EP +VV +D++ ++VG KE L T + ++ + + D
Sbjct: 250 GILHYTIGQRRGIGVATG-EPLYVVYLDSRSRRVIVGPKEALETRRVYLRDVNWLGDEEL 308
Query: 301 ----FKDGEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVY----KDDI 352
+ E F K R PA A + E + V E GVA GQA +Y +D
Sbjct: 309 EAAAGQGFECFAKVRSTRRPAPAVLKSDAEGLYVELVEGEAGVAPGQACALYSGTGEDAR 368
Query: 353 LLGGGVI 359
+ GGG I
Sbjct: 369 VYGGGFI 375
>ref|NP_642324.1| (NC_003919) tRNA methyltransferase [Xanthomonas axonopodis pv.
citri str. 306]
gb|AAM36860.1| (AE011835) tRNA methyltransferase [Xanthomonas axonopodis pv. citri
str. 306]
Length = 378
Score = 182 bits (463), Expect = 4e-45
Identities = 122/357 (34%), Positives = 190/357 (53%), Gaps = 22/357 (6%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYI----KNAQKACEFLGI 75
+I V +SGGVDSS +A+ L +QG + G++++ A + D ++A C LGI
Sbjct: 5 RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNWADDGSGDCRAEDDRRDAVAVCGVLGI 64
Query: 76 PLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATGH 135
P DF ++ S V++ F+ Y G+TPNP LCN +KF LD A LG E+IATGH
Sbjct: 65 PFHFRDFSGEYWSDVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERIATGH 124
Query: 136 YARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNA-MP 194
YA+V + D+ KDQSYFL+ L +A +FP+GDL K ++ +A +A +P
Sbjct: 125 YAQVAHRGGRWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLRRIAQDAGLP 184
Query: 195 FLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIGKR 253
K+S ICF+ E+ + + L +++ + G +++ QG+ I H G +T+G+R
Sbjct: 185 ----THAKKDSTGICFIGERDFREFLGRYLPA-RTGEIRDPQGQRIAEHPGVFYFTLGQR 239
Query: 254 KGFSIKG----ALEPHFVVGIDAKKNELVVGKKED---LATHSLKAKNKSLMKDFKDGEY 306
+G +I G A P +VVG D N L V + D L + L+++ +
Sbjct: 240 EGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTGAPPARR 299
Query: 307 F---IKARYRSVPAKAHVSLKDE-VIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
F + RYR V ++D+ ++V F+ P V GQ+LV+Y + LGG VI
Sbjct: 300 FSCTAQTRYRQPDESCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDGEECLGGAVI 356
>ref|NP_637329.1| (NC_003902) tRNA methyltransferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gb|AAM41253.1| (AE012300) tRNA methyltransferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 378
Score = 181 bits (459), Expect = 1e-44
Identities = 118/352 (33%), Positives = 188/352 (52%), Gaps = 22/352 (6%)
Query: 25 LSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYI----KNAQKACEFLGIPLEVL 80
+SGGVDSS +A+ L + G + G++++ A + D ++A C LGIP
Sbjct: 10 VSGGVDSSVAAWKLAQDGEPIAGLFMQNWADDGSGDCRAEDDRRDAVAVCGVLGIPFHFR 69
Query: 81 DFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATGHYARVK 140
DF ++ S V++ F+ Y G+TPNP LCN +KF L+ A LG E+IATGHYARV
Sbjct: 70 DFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLEAAQALGAERIATGHYARVA 129
Query: 141 EIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNA-MPFLGTL 199
+ + D+ KDQSYFL+ L +A +FP+G+L K ++ +A +A +P
Sbjct: 130 HLGGRWRLLRGADRNKDQSYFLHQLGQSQLAATLFPIGELEKSALRRIAQDAGLP----T 185
Query: 200 ETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIGKRKGFSI 258
K+S ICF+ E+ + + L +++ + G +++ QG+ I H G +T+G+R+G +I
Sbjct: 186 HAKKDSTGICFIGERDFREFLGRYLPA-RTGEIRDPQGQRIAEHPGVFYFTLGQREGLNI 244
Query: 259 KG----ALEPHFVVGIDAKKNELVVGKKED---LATHSLKAKNKSLMKDFKDGEYF---I 308
G A P +VVG D N L V + D L + L+++ + F
Sbjct: 245 GGVRGRAAAPWYVVGKDVGSNVLYVDQDRDSPLLQSRWLQSEQAHWVTGAPPARSFSCTA 304
Query: 309 KARYRSVPAKAHVSLKDE-VIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
+ RYR V+++D+ ++V F+ P V GQ+LV+Y + LGG VI
Sbjct: 305 QTRYRQPDEPCTVTVQDDGTLQVNFERPQRAVTPGQSLVLYDGEECLGGAVI 356
>ref|NP_660600.1| (NC_004061) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Buchnera aphidicola str. Sg (Schizaphis graminum)]
gb|AAM67811.1| (AE014101) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Buchnera aphidicola str. Sg (Schizaphis graminum)]
Length = 367
Score = 181 bits (458), Expect = 2e-44
Identities = 115/359 (32%), Positives = 202/359 (56%), Gaps = 24/359 (6%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-----IKNAQKACEFLG 74
K+ + +SGGVDSS SA+ LK + +++ G+++K + + + + +A++ C+ L
Sbjct: 7 KVIIAMSGGVDSSVSAWFLKNENYQVEGLFMKNWEEDDEKEYCNAAKDLSDAEEVCKKLN 66
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LGCEKIAT 133
I L ++F K++ V++ F+N +++G+TPNP LCN +KF + ++A++ L + IAT
Sbjct: 67 IHLHKVNFSKEYWEKVFENFLNEHKKGKTPNPDILCNKEIKFKIFFNYAIQELQSDYIAT 126
Query: 134 GHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAM 193
GHYA++K+ + ++ +A+D KDQSYFLY L+ + ++FP+G L K ++ +A
Sbjct: 127 GHYAQIKKKNGKYFLLKAVDLNKDQSYFLYTLKGIQLKNILFPIGGLKKSQVRIIAKK-- 184
Query: 194 PFLG-TLETYKESQEICFVEKSYIDT-LKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIG 251
+G + K+S ICF+ I+ L ++++ EK G + +G ++G H G YT+G
Sbjct: 185 --IGLKVAEKKDSTGICFIGPKKINNFLNRYIKAEK-GDIITTEGTIVGKHNGLFCYTLG 241
Query: 252 KRKGFSIKGALE----PHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLMKDFKDG 304
+RKG I G P +V+ + N L++ + + L + L A+ + + D K
Sbjct: 242 QRKGLGIGGIKGNYNIPWYVIEKNIINNTLIIAQGSCNKRLMSIGLIAEKINWINDDKII 301
Query: 305 EYF---IKARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
F K RYR + ++ + D +I+V F P V GQ++V Y I LGGGVI
Sbjct: 302 FPFSCQAKIRYRQIDIFCNIKYINDFLIKVLFDSPVSSVTPGQSIVFYSSKICLGGGVI 360
>ref|NP_240085.1| (NC_002528) tRNA (5-methylaminomethyl-2-thiouridylate)-methy
ltransferase [Buchnera sp. APS]
dbj|BAB12971.1| (AP001118) tRNA (5-methylaminomethyl-2-thiouridylate)-methy
ltransferase [Buchnera sp. APS]
Length = 392
Score = 179 bits (454), Expect = 4e-44
Identities = 118/358 (32%), Positives = 191/358 (52%), Gaps = 22/358 (6%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY------IKNAQKACEFL 73
KI V +SGGVDSS A+ LK+Q +++ G+++K + E + Y + +A+ C+ L
Sbjct: 32 KIIVAMSGGVDSSVCAWILKKQNYQVEGLFMK-NWEEDDQEGYCSSTKDLLDAENICKKL 90
Query: 74 GIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LGCEKIA 132
I L ++F ++ V++ F+ Y++G TPNP LCN +KF + L+++++ L + IA
Sbjct: 91 NIYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIA 150
Query: 133 TGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNA 192
TGHYAR+K+I+ + + +D KDQSYFLY L + K++FP+G L K ++ +A
Sbjct: 151 TGHYARIKKINGKYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNIAKKI 210
Query: 193 MPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIGK 252
+ K+S ICF+ + EK+G + + G VIG H G YTIG+
Sbjct: 211 DL---KIAKKKDSTGICFIGPKKLKNFLSLYISEKKGDIVTISGRVIGKHSGVFYYTIGQ 267
Query: 253 RKGFSIKGALE----PHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLMKDFKDG- 304
R+G I G P +VV + +KN L+V + + L + L AKN + + +
Sbjct: 268 RQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYNKHLMSIGLIAKNINWINYDQLSF 327
Query: 305 --EYFIKARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
K RYR + + + I++ F P V GQ++V Y DI +GGG+I
Sbjct: 328 PLSCMAKTRYRQKDIICKIEYINNHHIKILFDCPVAAVTPGQSVVFYVSDICIGGGII 385
>sp|P57349|TRMU_BUCAI Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
Length = 368
Score = 179 bits (454), Expect = 4e-44
Identities = 118/358 (32%), Positives = 191/358 (52%), Gaps = 22/358 (6%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY------IKNAQKACEFL 73
KI V +SGGVDSS A+ LK+Q +++ G+++K + E + Y + +A+ C+ L
Sbjct: 8 KIIVAMSGGVDSSVCAWILKKQNYQVEGLFMK-NWEEDDQEGYCSSTKDLLDAENICKKL 66
Query: 74 GIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LGCEKIA 132
I L ++F ++ V++ F+ Y++G TPNP LCN +KF + L+++++ L + IA
Sbjct: 67 NIYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIA 126
Query: 133 TGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNA 192
TGHYAR+K+I+ + + +D KDQSYFLY L + K++FP+G L K ++ +A
Sbjct: 127 TGHYARIKKINGKYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNIAKKI 186
Query: 193 MPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYTIGK 252
+ K+S ICF+ + EK+G + + G VIG H G YTIG+
Sbjct: 187 DL---KIAKKKDSTGICFIGPKKLKNFLSLYISEKKGDIVTISGRVIGKHSGVFYYTIGQ 243
Query: 253 RKGFSIKGALE----PHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLMKDFKDG- 304
R+G I G P +VV + +KN L+V + + L + L AKN + + +
Sbjct: 244 RQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYNKHLMSIGLIAKNINWINYDQLSF 303
Query: 305 --EYFIKARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
K RYR + + + I++ F P V GQ++V Y DI +GGG+I
Sbjct: 304 PLSCMAKTRYRQKDIICKIEYINNHHIKILFDCPVAAVTPGQSVVFYVSDICIGGGII 361
>ref|NP_298729.1| (NC_002488) tRNA methyltransferase [Xylella fastidiosa 9a5c]
sp|Q9PDD9|TRMU_XYLFA Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||F82680 tRNA methyltransferase XF1440 [imported] - Xylella fastidiosa
(strain 9a5c)
gb|AAF84249.1|AE003974_4 (AE003974) tRNA methyltransferase [Xylella fastidiosa 9a5c]
Length = 379
Score = 178 bits (452), Expect = 8e-44
Identities = 119/362 (32%), Positives = 189/362 (51%), Gaps = 32/362 (8%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLK---------LHASEKKHDLYIKNAQKAC 70
+I V +SGGVDSS +A+ L Q + G++++ HA E + D A C
Sbjct: 5 RIIVAMSGGVDSSVAAWRLNSQRETIAGLFMRNWTDDGNGQCHAEEDRRD-----AVAVC 59
Query: 71 EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 130
LGI DF ++ V+ F+ Y G+TPNP LCN +KF L+ A +LG +
Sbjct: 60 GILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADS 119
Query: 131 IATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLAL 190
IATGHYAR+K + ++ D++KDQSYFL+ L E +A +FP+GDL K ++ LA
Sbjct: 120 IATGHYARIKHYRQRWHLLRGADRSKDQSYFLHQLGQEQLAATMFPIGDLEKPQLRQLAH 179
Query: 191 NA-MPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQY 248
A +P K+S ICF+ E+++ + LK+++ + G +++ Q + I H G +
Sbjct: 180 QAGLP----THAKKDSTGICFIGERNFREFLKQYLPAQ-PGEIRDPQEQRIAEHPGVFYF 234
Query: 249 TIGKRKGFSIKGAL----EPHFVVGIDAKKNELVVGKKED---LATHSLKAKNKSLMKDF 301
T+G+R+G +I G P +V+G D N L V + D L + L+++ +
Sbjct: 235 TLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSGS 294
Query: 302 KDGEYF---IKARYRSVPAKAHVSLK-DEVIEVGFKEPFYGVAKGQALVVYKDDILLGGG 357
F + RYR V+++ D ++V F + + V GQ+LV+Y + LGG
Sbjct: 295 PPAPTFTCTAQTRYRQADEPCKVTVRNDGSLDVDFTQTQWAVTPGQSLVLYDGNECLGGA 354
Query: 358 VI 359
VI
Sbjct: 355 VI 356
>ref|NP_356917.1| (NC_003063) AGR_L_2270p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK89702.1| (AE008313) AGR_L_2270p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 402
Score = 177 bits (449), Expect = 2e-43
Identities = 130/368 (35%), Positives = 189/368 (51%), Gaps = 34/368 (9%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLH--------ASEKKHDLYIKNAQKACE 71
+I V +SGGVDSS A LK +G++++GI L+L+ A I +A++ CE
Sbjct: 18 RIVVAMSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCCAGQDIDDARRVCE 77
Query: 72 FLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKI 131
LGIP VLD++ F+ V + F AY G+TP PC CN +KF L A +LG + +
Sbjct: 78 TLGIPHYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFADLLATAQELGADAL 137
Query: 132 ATGHYARVKEIDKIS------YIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 185
ATGHY R + + +S + +D +DQS+FL+A E I L FPLG L K +
Sbjct: 138 ATGHYIRSRP-NPVSGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYLRFPLGGLSKAET 196
Query: 186 KPLALNAMPFLGTLETYK-ESQEICFV-EKSYIDTLKK-HVEVEKEGVVKNLQGEVIGTH 242
+ LA +G + K +SQ+ICFV + Y D + K G + +L G V+G H
Sbjct: 197 RALAEE----MGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHLDGRVLGRH 252
Query: 243 KGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNK------S 296
G + YTIG+R+G + EP +VV +DA+ ++VG +E L T + ++ +
Sbjct: 253 DGIVHYTIGQRRGIGVATG-EPLYVVHLDARGRRVIVGPREALETRRVYLRDMNWLGDGA 311
Query: 297 LMKDFKDG-EYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYK----DD 351
L D G F K R P +A + + I V GVA GQA V+Y D
Sbjct: 312 LAADAGQGFTCFAKVRSTRPPTEAVLHADENGIYVDLMTGEAGVAPGQACVLYSAPGPDA 371
Query: 352 ILLGGGVI 359
+ GGG I
Sbjct: 372 RVYGGGFI 379
>sp|Q9PKA7|TRMU_CHLMU Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
Length = 358
Score = 177 bits (449), Expect = 2e-43
Identities = 119/361 (32%), Positives = 192/361 (52%), Gaps = 29/361 (8%)
Query: 17 LKMKIAVLLSGGVDSSYSAYSLKEQG-HELVGIYLKLHASEKKHDLYIK-----NAQKAC 70
++ + V +SGGVDSS AY LK+QG ++++G+++K + ++ + ++
Sbjct: 1 MRKTVIVAMSGGVDSSVVAYLLKKQGKYDVIGLFMKNWEEQDENGECTATKDFLDVEQIA 60
Query: 71 EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 130
E L IP + F K++K V+ F+ Y G TPNP LCN +KF L +L +
Sbjct: 61 EQLSIPYYTVSFAKEYKERVFSRFLKEYTNGYTPNPDVLCNREIKFDLLQKKVRELKGDF 120
Query: 131 IATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLAL 190
+ATGHY R +D + +D KDQSYFL E ++ ++FPLG + K +++ LA+
Sbjct: 121 LATGHYCR-GGLDGTGLFR-GVDPNKDQSYFLCGTPKEALSNVLFPLGGMYKTEVRQLAI 178
Query: 191 NAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYT 249
A L T T K+S ICF+ ++ + L++ V +V +V+G H+G YT
Sbjct: 179 EA--GLAT-ATKKDSTGICFIGKRPFKSFLEQFVPNSPGDIVDFDTQKVVGCHEGAHYYT 235
Query: 250 IGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDFKDGEYFI- 308
IG+R+G ++ G +P +V+G D +KN + + + ED H L + + + K+ +F+
Sbjct: 236 IGQRRGLNVGGMEKPCYVLGKDMQKNVVYIVRGED---HPLLYRKELIAKEL---NWFVP 289
Query: 309 ---------KARYRSVPAKAHV-SLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGV 358
K RYRS K V L+D ++V F P V GQ + Y+ D+ LGGGV
Sbjct: 290 LQGSITCSAKVRYRSPDEKCSVYPLEDGTVQVVFDIPVKAVTPGQTVAFYQGDVCLGGGV 349
Query: 359 I 359
I
Sbjct: 350 I 350
>ref|NP_296936.1| (NC_002620) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydia muridarum]
pir||C81689 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TC0560
[imported] - Chlamydia muridarum (strain Nigg)
gb|AAF39399.1| (AE002324) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydia muridarum]
Length = 373
Score = 177 bits (448), Expect = 2e-43
Identities = 119/361 (32%), Positives = 192/361 (52%), Gaps = 29/361 (8%)
Query: 17 LKMKIAVLLSGGVDSSYSAYSLKEQG-HELVGIYLKLHASEKKHDLYIK-----NAQKAC 70
++ + V +SGGVDSS AY LK+QG ++++G+++K + ++ + ++
Sbjct: 16 VRKTVIVAMSGGVDSSVVAYLLKKQGKYDVIGLFMKNWEEQDENGECTATKDFLDVEQIA 75
Query: 71 EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 130
E L IP + F K++K V+ F+ Y G TPNP LCN +KF L +L +
Sbjct: 76 EQLSIPYYTVSFAKEYKERVFSRFLKEYTNGYTPNPDVLCNREIKFDLLQKKVRELKGDF 135
Query: 131 IATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLAL 190
+ATGHY R +D + +D KDQSYFL E ++ ++FPLG + K +++ LA+
Sbjct: 136 LATGHYCR-GGLDGTGLFR-GVDPNKDQSYFLCGTPKEALSNVLFPLGGMYKTEVRQLAI 193
Query: 191 NAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYT 249
A L T T K+S ICF+ ++ + L++ V +V +V+G H+G YT
Sbjct: 194 EA--GLAT-ATKKDSTGICFIGKRPFKSFLEQFVPNSPGDIVDFDTQKVVGCHEGAHYYT 250
Query: 250 IGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDFKDGEYFI- 308
IG+R+G ++ G +P +V+G D +KN + + + ED H L + + + K+ +F+
Sbjct: 251 IGQRRGLNVGGMEKPCYVLGKDMQKNVVYIVRGED---HPLLYRKELIAKEL---NWFVP 304
Query: 309 ---------KARYRSVPAKAHV-SLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGV 358
K RYRS K V L+D ++V F P V GQ + Y+ D+ LGGGV
Sbjct: 305 LQGSITCSAKVRYRSPDEKCSVYPLEDGTVQVVFDIPVKAVTPGQTVAFYQGDVCLGGGV 364
Query: 359 I 359
I
Sbjct: 365 I 365
>ref|NP_662733.1| (NC_002932) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlorobium tepidum TLS]
gb|AAM73075.1| (AE012937) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlorobium tepidum TLS]
Length = 366
Score = 177 bits (448), Expect = 2e-43
Identities = 121/350 (34%), Positives = 182/350 (51%), Gaps = 15/350 (4%)
Query: 21 IAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIKNAQKAC--EFLGIPLE 78
+ + LSGGVDS+ +A L +QG+ + G+ +++ + + +A + E P+
Sbjct: 7 VIIGLSGGVDSAVAACLLIKQGYHVTGLNIRVLDTPEDTPTLAPSAMRISDSEEFDFPVF 66
Query: 79 VLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATGHYAR 138
L+ F V F + Y G+TPNPC +CN +K+ + L + +ATGHYAR
Sbjct: 67 TLNLSAKFARDVVGYFHDDYLAGRTPNPCMVCNKAIKWFGLFEAMRLLRADLVATGHYAR 126
Query: 139 VKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAMPFLGT 198
+ D ++ + + +D KDQSYFL+ L +AK +FPLG K +++ LA + F
Sbjct: 127 TELRDAVTRLLKGVDPEKDQSYFLWMLTQAELAKTLFPLGGYTKAEVRELARS---FGVH 183
Query: 199 LETYKESQEICFVEK----SYIDTLKKHVEVE-KEGVVKNLQGEVIGTHKGYMQYTIGKR 253
KESQEICFV +Y+ +E G + + G+VIG H+GY YTIG+R
Sbjct: 184 AAEKKESQEICFVPHDDYCAYLANAIPGLEARVAGGEIVDQAGKVIGHHRGYPFYTIGQR 243
Query: 254 KGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKS---LMKDFKDGEYFIKA 310
+G + EP +V IDA+ N + VG K DL SL A + + K E +
Sbjct: 244 RGLGVSTG-EPVYVTEIDAEHNRIHVGSKADLECRSLIASGMNWIGIATPDKSFEAEARI 302
Query: 311 RYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
RYR + + + D V F+EP GVA GQA+V Y D +LGGG+I
Sbjct: 303 RYRDRQSACMIEPMDDNRAWVSFREPKQGVACGQAVVFYDGDEVLGGGII 352
>ref|NP_390627.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
pir||G69978 probable ATPase yrrA - Bacillus subtilis
emb|CAB14691.1| (Z99117) similar to hypothetical proteins [Bacillus subtilis]
emb|CAB14708.1| (Z99118) similar to hypothetical proteins [Bacillus subtilis]
Length = 312
Score = 176 bits (447), Expect = 3e-43
Identities = 113/300 (37%), Positives = 159/300 (52%), Gaps = 11/300 (3%)
Query: 68 KACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLG 127
+ C +GIP ++F+K + V+ F++ Y+ G+TPNP LCN +KF L+HAL LG
Sbjct: 3 RVCNQIGIPYYAVNFEKQYYEKVFQYFLDEYKAGRTPNPDVLCNKEIKFKAFLEHALSLG 62
Query: 128 CEKIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKP 187
+ +ATGHYARV + +D+ KDQ+YFL L + ++K++FP+G+L K ++
Sbjct: 63 ADYLATGHYARVDRSGGKVRMLRGIDENKDQTYFLNQLTEDTLSKVMFPIGELQKSRVRE 122
Query: 188 LALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQ 247
+A A L T T K+S ICF+ + T + G + + GEV G H G M
Sbjct: 123 IAKEAE--LAT-ATKKDSTGICFIGERNFKTFLSQYLPAQPGDMMTMDGEVKGRHDGLMY 179
Query: 248 YTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGK---KEDLATHSLKAKNKSLMK-DFKD 303
YTIG+R G I G+ EP F VG D +KN L V + L + + A N S ++ D
Sbjct: 180 YTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNISWVRSDIMK 239
Query: 304 GEYF---IKARYRSVPAKAHVSLKDE-VIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
GE K RYR K V + E EV F E V GQA+V Y + LGGG I
Sbjct: 240 GEEISCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFYDGEECLGGGTI 299
>ref|NP_302176.1| (NC_002677) probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycobacterium leprae]
sp|O33099|TRMU_MYCLE Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||T45400 hypothetical protein MLCB637.07 [imported] - Mycobacterium leprae
emb|CAB16422.1| (Z99263) hypothetical protein MLCB637.07 [Mycobacterium leprae]
emb|CAC30660.1| (AL583923) probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycobacterium leprae]
Length = 358
Score = 176 bits (445), Expect = 5e-43
Identities = 117/351 (33%), Positives = 170/351 (48%), Gaps = 28/351 (7%)
Query: 19 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASE-----------KKHDLYIKNAQ 67
MK+ +SGGVDSS +A + + GH++VG++L L K D + +A+
Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHDVVGVHLALSTVSGTLRTGSRGCCSKED--VSDAR 58
Query: 68 KACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLG 127
+ + LGIP V DF + F+ V D F++AY G+TPNPC CN +KF AL LG
Sbjct: 59 RVADVLGIPFYVWDFAEKFQEDVIDNFVSAYARGETPNPCVQCNQRIKFSALSVRALMLG 118
Query: 128 CEKIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKP 187
+ +ATGHYAR+ ++ A+D+ KDQSY L L + + FP+GD LK+ ++
Sbjct: 119 FDTVATGHYARLSG----GRLRRAVDRGKDQSYVLAVLTAQQLRHAAFPIGDTLKRQVRA 174
Query: 188 LALNAMPFLGTLETYK-ESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYM 246
A G L K +S ICF+ + G V + G V+ H G
Sbjct: 175 EAARR----GLLVADKPDSHGICFIPSGNTRAFLSECIGIRRGSVVDADGTVLAEHDGVH 230
Query: 247 QYTIGKRKGFSIKGA---LEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSL---MKD 300
+T+G+RKG I G P +V IDA + VG DL H+L +
Sbjct: 231 GFTVGQRKGLGIVGPGPNGRPRYVTAIDADTATVYVGDAADLGVHTLIGRAPVFTAGAAP 290
Query: 301 FKDGEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDD 351
+ ++ R A A V L + + V EP GVA+GQ LV+Y+ D
Sbjct: 291 LGPVQCVVQIRAHGETAVAVVELIGDELFVRLCEPLRGVARGQTLVLYRLD 341
>ref|NP_629624.1| (NC_003888) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptomyces coelicolor A3(2)]
sp|O86583|TRMU_STRCO Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||T34768 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase -
Streptomyces coelicolor
emb|CAA20191.1| (AL031184) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptomyces coelicolor A3(2)]
Length = 376
Score = 174 bits (442), Expect = 1e-42
Identities = 118/364 (32%), Positives = 176/364 (47%), Gaps = 32/364 (8%)
Query: 19 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIK---------NAQKA 69
+++ +SGGVDS+ +A E GH++ G++L L A+ + + +A++A
Sbjct: 11 LRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLALSANPQSFRTGARGCCTIEDSRDARRA 70
Query: 70 CEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCE 129
+ +GIP V D F+ V ++F+ YE G+TPNPC CN +KF LD AL LG +
Sbjct: 71 ADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALALGFD 130
Query: 130 KIATGHYARV-KEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLL--KKDIK 186
+ TGHYA+V D + + A D KDQSY L L+ +A +FPLGD + K +I+
Sbjct: 131 AVCTGHYAQVILREDGVRELHRASDMAKDQSYVLGVLDDRQLAHAMFPLGDTVTTKDEIR 190
Query: 187 P------LALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIG 240
LA+ P +S +ICF+ + EG + + G +G
Sbjct: 191 AEAERRGLAVAKKP---------DSHDICFIADGNTQGFLADRLGKAEGDIVDEAGNRLG 241
Query: 241 THKGYMQYTIGKRKGFSIKGAL---EPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSL 297
TH+G YTIG+RKG I +P +V+ I N + VG E L +L+A
Sbjct: 242 THEGAYGYTIGQRKGLRIGTPAPDGKPRYVLDISPVNNTVTVGPAEALDVDALRAIKPRW 301
Query: 298 --MKDFKDGEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLG 355
G Y + R + L D +EV F EP GVA GQA+V+Y ++G
Sbjct: 302 CGAAPTGPGTYTAQLRAHGGETEVRAELVDGTLEVTFSEPVRGVAPGQAIVLYDGTRVVG 361
Query: 356 GGVI 359
I
Sbjct: 362 SATI 365
>ref|NP_534197.1| (NC_003305) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Agrobacterium tumefaciens str. C58 (U. Washington)]
gb|AAL44513.1| (AE009301) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Agrobacterium tumefaciens str. C58 (U. Washington)]
Length = 380
Score = 174 bits (440), Expect = 2e-42
Identities = 128/363 (35%), Positives = 186/363 (50%), Gaps = 34/363 (9%)
Query: 25 LSGGVDSSYSAYSLKEQGHELVGIYLKLH--------ASEKKHDLYIKNAQKACEFLGIP 76
+SGGVDSS A LK +G++++GI L+L+ A I +A++ CE LGIP
Sbjct: 1 MSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCCAGQDIDDARRVCETLGIP 60
Query: 77 LEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATGHY 136
VLD++ F+ V + F AY G+TP PC CN +KF L A +LG + +ATGHY
Sbjct: 61 HYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFADLLATAQELGADALATGHY 120
Query: 137 ARVKEIDKIS------YIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLAL 190
R + + +S + +D +DQS+FL+A E I L FPLG L K + + LA
Sbjct: 121 IRSRP-NPVSGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYLRFPLGGLSKAETRALAE 179
Query: 191 NAMPFLGTLETYK-ESQEICFV-EKSYIDTLKK-HVEVEKEGVVKNLQGEVIGTHKGYMQ 247
+G + K +SQ+ICFV + Y D + K G + +L G V+G H G +
Sbjct: 180 E----MGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHLDGRVLGRHDGIVH 235
Query: 248 YTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNK------SLMKDF 301
YTIG+R+G + EP +VV +DA+ ++VG +E L T + ++ +L D
Sbjct: 236 YTIGQRRGIGVATG-EPLYVVHLDARGRRVIVGPREALETRRVYLRDMNWLGDGALAADA 294
Query: 302 KDG-EYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYK----DDILLGG 356
G F K R P +A + + I V GVA GQA V+Y D + GG
Sbjct: 295 GQGFTCFAKVRSTRPPTEAVLHADENGIYVDLMTGEAGVAPGQACVLYSAPGPDARVYGG 354
Query: 357 GVI 359
G I
Sbjct: 355 GFI 357
>ref|NP_219792.1| (NC_000117) PP-loop superfamily ATPase [Chlamydia trachomatis]
sp|O84289|TRMU_CHLTR Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||D71533 probable p-loop ATPase - Chlamydia trachomatis (serotype D, strain
UW3/Cx)
gb|AAC67880.1| (AE001301) PP-loop superfamily ATPase [Chlamydia trachomatis]
Length = 358
Score = 173 bits (439), Expect = 2e-42
Identities = 117/361 (32%), Positives = 187/361 (51%), Gaps = 29/361 (8%)
Query: 17 LKMKIAVLLSGGVDSSYSAYSLKEQG-HELVGIYLKLHASEKKHDLY-----IKNAQKAC 70
++ + V +SGGVDSS AY LK+QG + +VG+++K + ++ ++ ++
Sbjct: 1 MRKTVIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDENGECTATKDFRDVERIA 60
Query: 71 EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 130
E L IP + F K++K V+ F+ Y G TPNP LCN +KF L +L +
Sbjct: 61 EQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGDF 120
Query: 131 IATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLAL 190
+ATGHY R + + +D KDQSYFL + ++ ++FPLG + K +++ +A
Sbjct: 121 LATGHYCRGGADG--TGLSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTEVRRIAQ 178
Query: 191 NAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQ-GEVIGTHKGYMQYT 249
A L T T K+S ICF+ K + + + G + + +V+G H+G YT
Sbjct: 179 EA--GLAT-ATKKDSTGICFIGKRPFKSFLEQFVADSPGDIIDFDTQQVVGRHEGAHYYT 235
Query: 250 IGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDFKDGEYFI- 308
IG+R+G +I G +P +V+ + +KN + + + ED H L + + L K+ +F+
Sbjct: 236 IGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGED---HPLLYRQELLAKEL---NWFVP 289
Query: 309 ---------KARYRSVPAKAHV-SLKDEVIEVGFKEPFYGVAKGQALVVYKDDILLGGGV 358
K RYRS K V L+D ++V F P V GQ + Y+ DI LGGGV
Sbjct: 290 LQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDICLGGGV 349
Query: 359 I 359
I
Sbjct: 350 I 350
>ref|NP_212816.1| (NC_001318) conserved hypothetical protein [Borrelia burgdorferi]
sp|O51625|TRMU_BORBU Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||A70185 conserved hypothetical protein BB0682 - Lyme disease spirochete
gb|AAC67035.1| (AE001169) conserved hypothetical protein [Borrelia burgdorferi]
Length = 355
Score = 170 bits (431), Expect = 2e-41
Identities = 116/362 (32%), Positives = 188/362 (51%), Gaps = 33/362 (9%)
Query: 19 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIY-LKLHASEKKHDLYIKNA---------QK 68
MKIAVLLSGGVDSS + Y + +G+ + Y LK+ ++ YI N +
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS--YIGNCPWQEDLNYVEA 58
Query: 69 ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 128
C +P E+++FQK++ + V I + G TP+P CN +KFG A +
Sbjct: 59 ICNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFG-AFFEKINSQY 117
Query: 129 EKIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPL 188
+ + TGHYA+++ + +++A DK KDQSYFL L + ++KL FPLG LLK +++ +
Sbjct: 118 DLVVTGHYAKIQIKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSEVRQI 177
Query: 189 ALNA-MPFLGTLETYKESQEICFVEK-SYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYM 246
A N +P + K+SQ ICF+ K Y + +K H+ +K +++ G++IG H GY
Sbjct: 178 AKNINLP----NKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233
Query: 247 QYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSL------MKD 300
+T+G+R+G + P FV+ D +KN + + E+ + +AK K L + D
Sbjct: 234 FFTVGQRRGIKLSNG--PWFVIEKDLEKNIIYISHNEN---YLKQAKRKFLVHEIHWIND 288
Query: 301 FKDGEYFIKARYRSVPAKAHVSLK---DEVIEVGFKEPFYGVAKGQALVVYKDDILLGGG 357
K + R K LK + ++E+ + G++ GQ + YK+ LGG
Sbjct: 289 TPTNFENFKIKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKNTECLGGA 348
Query: 358 VI 359
I
Sbjct: 349 KI 350
>ref|NP_224638.1| (NC_000922) PP-loop superfamily ATPase [Chlamydophila pneumoniae
CWL029]
ref|NP_300495.1| (NC_002491) PP-loop superfamily ATPase [Chlamydophila pneumoniae
J138]
ref|NP_444864.1| (NC_002179) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydophila pneumoniae AR39]
sp|Q9Z8A5|TRMU_CHLPN Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||H72079 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase CP0315
[imported] - Chlamydophila pneumoniae (strains CWL029
and AR39)
gb|AAD18582.1| (AE001626) PP-loop superfamily ATPase [Chlamydophila pneumoniae
CWL029]
gb|AAF38171.1| (AE002194) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydophila pneumoniae AR39]
dbj|BAA98646.1| (AP002546) PP-loop superfamily ATPase [Chlamydophila pneumoniae
J138]
Length = 361
Score = 169 bits (429), Expect = 3e-41
Identities = 109/355 (30%), Positives = 184/355 (51%), Gaps = 15/355 (4%)
Query: 17 LKMKIAVLLSGGVDSSYSAYSLKE-QGHELVGIYLKLHASEKKHDLY-----IKNAQKAC 70
++ + V +SGGVDSS AY K+ ++++G+++K + + L ++ ++ C
Sbjct: 1 MQQTVIVAMSGGVDSSVVAYLFKKFTNYKVIGLFMKNWEEDSEGGLCSSTKDYEDVERVC 60
Query: 71 EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 130
L IP + F K+++ V+ F+ Y G TPNP LCN +KF L +LG +
Sbjct: 61 LQLDIPYYTVSFAKEYRERVFARFLKEYSLGYTPNPDILCNREIKFDLLQKKVQELGGDY 120
Query: 131 IATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLAL 190
+ATGHY R+ + + + D KDQSYFL + ++FPLG++ K +++ +A
Sbjct: 121 LATGHYCRLNTELQETQLLRGCDPQKDQSYFLSGTPKSALHNVLFPLGEMNKTEVRAIAA 180
Query: 191 NAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYMQYT 249
A L T E K+S ICF+ ++ + + L+K + + V+ E++G H+G YT
Sbjct: 181 QAA--LPTAEK-KDSTGICFIGKRPFKEFLEKFLPNKTGNVIDWDTKEIVGQHQGAHYYT 237
Query: 250 IGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKED---LATHSLKAKNKSLMKDFKDG-E 305
IG+R+G + G+ +P +VVG + ++N + + + ED L L A+ + K G
Sbjct: 238 IGQRRGLDLGGSEKPCYVVGKNIEENSIYIVRGEDHPQLYLRELTARELNWFTPPKSGCH 297
Query: 306 YFIKARYRSVPAKAHVSLKD-EVIEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
K RYRS + + ++V F +P V GQ + Y+ D LG GVI
Sbjct: 298 CSAKVRYRSPDEACTIDYSSGDEVKVRFSQPVKAVTPGQTIAFYQGDTCLGSGVI 352
>ref|NP_217540.1| (NC_000962) hypothetical protein Rv3024c [Mycobacterium
tuberculosis H37Rv]
ref|NP_337624.1| (NC_002755) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycobacterium tuberculosis CDC1551]
sp|O53271|TRMU_MYCTU Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||C70858 hypothetical protein Rv3024c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA16109.1| (AL021287) hypothetical protein Rv3024c [Mycobacterium tuberculosis
H37Rv]
gb|AAK47438.1| (AE007129) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycobacterium tuberculosis CDC1551]
Length = 367
Score = 168 bits (425), Expect = 1e-40
Identities = 111/351 (31%), Positives = 168/351 (47%), Gaps = 28/351 (7%)
Query: 19 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASE-----------KKHDLYIKNAQ 67
MK+ +SGGVDSS +A + + GHE+VG+++ L + K D +A+
Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHMALSTAPGTLRTGSRGCCSKEDA--ADAR 58
Query: 68 KACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLG 127
+ + LGIP V DF + FK V ++F+++Y G+TPNPC CN +KF A+ LG
Sbjct: 59 RVADVLGIPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALG 118
Query: 128 CEKIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKP 187
+ +ATGHYAR+ ++ A+D+ KDQSY L L + + FP+GD K+ I+
Sbjct: 119 FDTVATGHYARLSG----GRLRRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRA 174
Query: 188 LALNAMPFLGTLETYK-ESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGYM 246
A G K +S +ICF+ + GVV + G V+ +H G
Sbjct: 175 EAARR----GLAVANKPDSHDICFIPSGNTKAFLGERIGVRRGVVVDADGVVLASHDGVH 230
Query: 247 QYTIGKRKGFSIKGA---LEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDFKD 303
+TIG+R+G I G P +V IDA + VG DL +L +
Sbjct: 231 GFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTAGAAP 290
Query: 304 G---EYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDD 351
+ ++ R A L + + V P GVA+GQ LV+Y+ D
Sbjct: 291 SGPVDCVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPD 341
>ref|NP_078237.1| (NC_002162) tRNA-(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Ureaplasma urealyticum]
sp|Q9PQ88|TRMU_UREPA Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||H82896 tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase UU402
[imported] - Ureaplasma urealyticum
gb|AAF30812.1|AE002137_11 (AE002137) tRNA-(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Ureaplasma urealyticum]
Length = 385
Score = 167 bits (424), Expect = 1e-40
Identities = 111/369 (30%), Positives = 197/369 (53%), Gaps = 29/369 (7%)
Query: 16 RLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKL----------HASEKKH-----D 60
++K ++ V LSGGVDSS SA LK++G+E++G+++ H K H +
Sbjct: 4 KVKKRVVVGLSGGVDSSVSALLLKQEGYEVIGLFMSNWDTIANFENNHEFNKTHQGCESE 63
Query: 61 LYIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLAL 120
L ++AQ + +GIPL ++F K++ V++ F++ Y++ +TPNP LCN +KF L
Sbjct: 64 LDYQDAQAVAQKIGIPLYRVEFIKEYWDNVFEYFLSEYQKNRTPNPDILCNQFIKFDSFL 123
Query: 121 DHAL-KLGCEKIATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGD 179
++A +L + IA GHYARVK S++ +A+D KDQ+YFL L + ++FP+G
Sbjct: 124 NYAKNELQADYIAMGHYARVKHDRNSSFLLKAIDTNKDQTYFLCNLNQNQLQNVLFPIGH 183
Query: 180 LLKKDIKPLALNAMPFLGTL-ETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGE 237
L K ++ +A G + K+S ICF+ E+++ L+ ++ + ++ + +
Sbjct: 184 LTKLQVRAIAKKH----GLITANKKDSTGICFIGERNFKTFLQNYIPNQPGQIINIVNNQ 239
Query: 238 VIGTHKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVG----KKEDLATHSLKAK 293
+IG H G M YTIG+RKG ++ G E FV D K + V +K+ L + +
Sbjct: 240 IIGHHIGTMYYTIGQRKGLNLGGMNERMFVCDKDIDKKIIYVAPSSFEKQYLISTQALIE 299
Query: 294 NKSLMKDFKDG-EYFIKARYRS--VPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKD 350
N + ++ + ++ R+R + + +K+ + E + GQ V Y++
Sbjct: 300 NINFIEPYNPQIPIMVRFRHRQDLIIVNDFLPIKNTKNVLINYESARAITPGQYAVFYQN 359
Query: 351 DILLGGGVI 359
D +GGG++
Sbjct: 360 DHCIGGGIV 368
>ref|NP_072962.1| (NC_000908) conserved hypothetical protein [Mycoplasma genitalium]
sp|P47537|TRMU_MYCGE Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||F64232 hypothetical protein homolog MG295 - Mycoplasma genitalium
gb|AAC71516.1| (U39709) conserved hypothetical protein [Mycoplasma genitalium]
Length = 367
Score = 159 bits (403), Expect = 4e-38
Identities = 115/360 (31%), Positives = 183/360 (49%), Gaps = 29/360 (8%)
Query: 25 LSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-----------------IKNAQ 67
LSGGVDS+ SA LK+Q E++G++++ +D Y + A+
Sbjct: 12 LSGGVDSAVSALLLKKQYQEVIGVFMECWDETLNNDFYGHKKINNNKSGCSSFQDFQQAK 71
Query: 68 KACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLG 127
K LGI L + + + + V+ I ++++G TPNP CN +KFGL D ++
Sbjct: 72 KIANSLGIKLIKKNLIEAYWNKVFLPMIQSFKKGLTPNPDIWCNRFIKFGLLHDFCKQIN 131
Query: 128 CEKI-ATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIK 186
+ ATGHYA++ I+ + D KDQ+YFL ++ E ++FPL DL K ++
Sbjct: 132 PNSLFATGHYAKINMIENQPLLSIPKDTNKDQTYFLANVKKEQFQNVIFPLADLKKITVR 191
Query: 187 PLALNAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQ-GEVIGTHKG 244
+A + K+S ICF+ E+ + D LK ++ V K+G++K+ + + I H G
Sbjct: 192 NIARENN---WEVADKKDSTGICFIGERHFSDFLKNYLPV-KKGLIKDWKTKQTISEHDG 247
Query: 245 YMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVG-KKEDLATHSLKAKNKSLMKDFKD 303
YTIG+R G ++ G + HFVV D + NEL V KE+L ++ + + K
Sbjct: 248 VWFYTIGQRSGLNLGGLKQRHFVVAKDIETNELFVSCDKEELLKTTILLDQFNWLYTPKQ 307
Query: 304 --GEYFIKARYRSVPAKAHVS-LKDEVIEVGFKEPFYGVAKGQALVVYK-DDILLGGGVI 359
+ ++ R+ P A + L D +E+ FK P VA GQ V+Y D I LG G+I
Sbjct: 308 LPSQVLVRIRHAQKPEIAKLKLLSDNKLEITFKNPVISVASGQFGVLYTLDQICLGAGLI 367
>sp|O75648|TRMU_HUMAN tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
emb|CAB38414.1| (AL031588) dJ1163J1.2 (novel protein similar to C. elegans B0035.16
and bacterial tRNA
(5-Methylaminomethyl-2-thiouridylate)-
Methyltransferases) [Homo sapiens]
emb|CAB63078.1| (AL022325) fF27C3.1 (novel protein) [Homo sapiens]
gb|AAL35970.1| (AF448221) 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Homo sapiens]
gb|AAL38183.1| (AY062123) 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Homo sapiens]
Length = 421
Score = 153 bits (387), Expect = 3e-36
Identities = 108/382 (28%), Positives = 189/382 (49%), Gaps = 46/382 (12%)
Query: 21 IAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKH-----DLYIKNAQKACEFLGI 75
+ LSGGVDS+ +A L+ +G+++ G+++K S +H D ++A + C+ L I
Sbjct: 7 VVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRVCQILDI 66
Query: 76 PLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHAL-KLGCEKIATG 134
P + + K++ + V+ +F+N YE+G+TPNP +CN +KF +A+ LG + IATG
Sbjct: 67 PFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAIATG 126
Query: 135 HYARVK-----------------------EIDKISYIQEALDKTKDQSYFLYALEHEVIA 171
HYAR E+ + +A D KDQ++FL + + +
Sbjct: 127 HYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALR 186
Query: 172 KLVFPLGDLLKKDIKPLALNAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGV 230
+ +FPLG L K+ +K +A A L + KES +CF+ ++++ L ++++
Sbjct: 187 RTIFPLGGLTKEFVKKIA--AENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHF 244
Query: 231 VKNLQGEVIGTHKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKED------ 284
+ +V+GTHKG+ YT+G+R +I G EP +VV D+ K ++ V + D
Sbjct: 245 ISIEDNKVLGTHKGWFLYTLGQRA--NIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYR 302
Query: 285 -----LATHSLKAKNKSLMKDFKDGEYFIKARYRSVPAKAHVSL-KDEVIEVGFKEPFYG 338
H + + + + K E + R++ ++L +D + V +
Sbjct: 303 DLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQAVRA 362
Query: 339 VAKGQALVVYKDDILLGGGVIV 360
+A GQ V YK D LG G I+
Sbjct: 363 LATGQFAVFYKGDECLGSGKIL 384
>ref|NP_175542.1| (NM_104009) unknown protein [Arabidopsis thaliana]
gb|AAD30642.1|AC006085_15 (AC006085) Unknown protein [Arabidopsis thaliana]
Length = 421
Score = 153 bits (387), Expect = 3e-36
Identities = 113/365 (30%), Positives = 178/365 (47%), Gaps = 29/365 (7%)
Query: 19 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 70
+++AVLLSGGVDSS + L GH YLK+ E + + +K A+ C
Sbjct: 6 LRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWEDDLKYAKHVC 65
Query: 71 EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 130
E + +PLEV+ ++ V I Y G+TPNP LCN +KFG +D + +
Sbjct: 66 EQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISDMEYDY 125
Query: 131 IATGHYARV-----KEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 185
+ +GHYA+V + D S ++ + D KDQ+YFL L + +L+FPLG + K ++
Sbjct: 126 VGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFPLGCVKKDEV 185
Query: 186 KPLALNAMPFLGTLETYKESQEICFVEK-SYIDTLKKHVEVEKEGVVKNLQ-GEVIGTHK 243
+ LA F + K+SQ ICF+ K + D + +H+ E EG++ + G+ +G H+
Sbjct: 186 RKLATQ---FDLPNKDRKDSQGICFLGKIKFSDFVCRHIG-EMEGIILEAESGDFLGNHR 241
Query: 244 GYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKE---DLATHSLKAKNKSLMKD 300
G+ YTIG+R+G + G P +VV D K N + V + D + +
Sbjct: 242 GFWFYTIGQRQGLRLPGG--PWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGSLRWNSG 299
Query: 301 FKDGEY-FIKARYRSVPAKAHVSLKDE----VIEVGFKEPFYGVAKGQALVVYKDDILLG 355
G+ ++ + R P S + E V V E G+A GQ Y+ +G
Sbjct: 300 KPSGKVRELRCKVRHGPGFYSCSFEMEGDGDVAVVHLDEDDQGLAAGQFAAFYEGTTCIG 359
Query: 356 GGVIV 360
GVI+
Sbjct: 360 SGVIL 364
>ref|NP_652639.1| (NM_144382) EG:BACR7A4.8 gene product; Transcription unit E
[Drosophila melanogaster]
gb|AAK93197.1| (AY051773) LD29918p [Drosophila melanogaster]
Length = 389
Score = 150 bits (380), Expect = 2e-35
Identities = 110/371 (29%), Positives = 189/371 (50%), Gaps = 39/371 (10%)
Query: 21 IAVLLSGGVDSSYSAYSLKEQGHELVGIYLKL-----HASEKKHDLYIKNAQKACEFLGI 75
+ V +SGGVDS+ SA+ L EQG +++G++++ + +K+A+ AC LG+
Sbjct: 5 VVVGVSGGVDSAVSAHLLAEQGFKVLGVFMRNWDEADEVGRCSGEADLKDAEWACRQLGV 64
Query: 76 PLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LGCEKIATG 134
L +++ +++ +AV+ +F++ Y+ G TPNP LCN +KF L HAL+ LG + +ATG
Sbjct: 65 ELRQVNYVREYWTAVFSQFLDDYQMGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATG 124
Query: 135 HYAR---VKEIDKISYIQEA-----LDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIK 186
HYAR ++ I+ +A D KDQ++FL + + + + +FPLGD K +K
Sbjct: 125 HYARNSLGNYLEGIASNNDARLLIPADTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVK 184
Query: 187 PLALNAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGY 245
LA L KES ICFV ++++ D +++++ ++ + G V+G H+G
Sbjct: 185 DLAKKI--GFQRLAKKKESTGICFVGKRNFKDFIQEYITSKRGPFLDIDSGAVVGHHEGI 242
Query: 246 MQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKED----LATHS-------LKAKN 294
Q+T+G+R + L+P+FV +A N + V + L+TH L +K+
Sbjct: 243 HQWTVGQR--CRLSSFLQPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKS 300
Query: 295 KSLMKDFKDGEYFIKARYRSVPAKAHVSLK-----DEVIEVGFKEPFYGVAKGQALVVYK 349
+ ++ D ++ R+R K V + V P + GQ V Y
Sbjct: 301 QQILSDTGS----LRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFYD 356
Query: 350 DDILLGGGVIV 360
D LG I+
Sbjct: 357 DTACLGSARIL 367
>ref|XP_128011.1| (XM_128011) expressed sequence AI314320 [Mus musculus]
ref|NP_082339.1| (NM_028063) RIKEN cDNA 1600025P05 [Mus musculus]
sp|Q9DAT5|TRMU_MOUSE tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
dbj|BAB24110.1| (AK005541) data source:SPTR, source key:O75648,
evidence:ISS~homolog to PROBABLE TRNA
(5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
(EC 2.1.1.61)~putative [Mus musculus]
Length = 417
Score = 150 bits (380), Expect = 2e-35
Identities = 112/382 (29%), Positives = 188/382 (48%), Gaps = 46/382 (12%)
Query: 21 IAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKH-----DLYIKNAQKACEFLGI 75
+ LSGGVDS+ +A L+ +G+++ G+++K S + D ++A K C+ L I
Sbjct: 7 VVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEQGVCAADKDCEDAYKVCQILDI 66
Query: 76 PLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHAL-KLGCEKIATG 134
P + + K++ + V+ +F+N YE+G+TPNP CN +KF +A+ LG + +ATG
Sbjct: 67 PFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDINCNKHIKFSCFYHYAVDNLGADAVATG 126
Query: 135 HYARVKEIDKISYIQ-----------------------EALDKTKDQSYFLYALEHEVIA 171
HYAR D+ + Q +A D KDQ++FL + + +
Sbjct: 127 HYARTSLEDEEVFEQKHTKKPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQDALR 186
Query: 172 KLVFPLGDLLKKDIKPLALNAMPFLGTLETYKESQEICFVEKSYID-TLKKHVEVEKEGV 230
+ +FPLG+L K +K +A A L + +ES ICF+ K ++ L ++++
Sbjct: 187 RTIFPLGELTKDFVKKIA--AENSLHHVLQKRESMGICFIGKRNLEHFLLQYLQPRPGKF 244
Query: 231 VKNLQGEVIGTHKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKED------ 284
V V+GTHKG+ YT+G+R I G EP +VV D K +++V + D
Sbjct: 245 VSIEDNTVLGTHKGWFLYTLGQRA--KISGLREPWYVVEKDGTKGDVLVAPRVDHPALYR 302
Query: 285 --LAT---HSLKAKNKSLMKDFKDGEYFIKARYRSVPAKAHVSL-KDEVIEVGFKEPFYG 338
L T H + + + + K E + R++ ++L +D + V + G
Sbjct: 303 DLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKAVRG 362
Query: 339 VAKGQALVVYKDDILLGGGVIV 360
+A GQ V YK + LG G I+
Sbjct: 363 LALGQFAVFYKGEECLGSGKIL 384
>emb|CAB65878.1| (AL109630) /prediction=(method:''genefinder'',
version:''084'')~/match=(desc:''PROBABLE TRNA
(5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
(EC 2.1.1.61)'', species:''Synechocystis sp. (strain PCC
6803)'', ranges:(query:204306..204401, target:>
Length = 371
Score = 150 bits (378), Expect = 3e-35
Identities = 109/366 (29%), Positives = 187/366 (50%), Gaps = 39/366 (10%)
Query: 21 IAVLLSGGVDSSYSAYSLKEQGHELVGIYLKL-----HASEKKHDLYIKNAQKACEFLGI 75
+ V +SGGVDS+ SA+ L EQG +++G++++ + +K+A+ AC LG+
Sbjct: 5 VVVGVSGGVDSAVSAHLLAEQGFKVLGVFMRNWDEADEVGRCSGEADLKDAEWACRQLGV 64
Query: 76 PLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LGCEKIATG 134
L +++ +++ +AV+ +F++ Y+ G TPNP LCN +KF L HAL+ LG + +ATG
Sbjct: 65 ELRQVNYVREYWTAVFSQFLDDYQMGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATG 124
Query: 135 HYAR---VKEIDKISYIQEA-----LDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIK 186
HYAR ++ I+ +A D KDQ++FL + + + + +FPLGD K +K
Sbjct: 125 HYARNSLGNYLEGIASNNDARLLIPADTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVK 184
Query: 187 PLALNAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGY 245
LA L KES ICFV ++++ D +++++ ++ + G V+G H+G
Sbjct: 185 DLAKKI--GFQRLAKKKESTGICFVGKRNFKDFIQEYITSKRGPFLDIDSGAVVGHHEGI 242
Query: 246 MQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKED----LATHS-------LKAKN 294
Q+T+G+R + L+P+FV +A N + V + L+TH L +K+
Sbjct: 243 HQWTVGQR--CRLSSFLQPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKS 300
Query: 295 KSLMKDFKDGEYFIKARYRSVPAKAHVSLK-----DEVIEVGFKEPFYGVAKGQALVVYK 349
+ ++ D ++ R+R K V + V P + GQ V Y
Sbjct: 301 QQILSDTGS----LRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFYD 356
Query: 350 DDILLG 355
D LG
Sbjct: 357 DTACLG 362
>ref|NP_110110.1| (NC_000912) TRNA
(5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE.
[Mycoplasma pneumoniae]
sp|P75365|TRMU_MYCPN Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||S73745 hypothetical protein A05_orf370 - Mycoplasma pneumoniae (strain
ATCC 29342)
gb|AAB96067.1| (AE000040) TRNA
(5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-
METHYLTRANSFERASE.~MPN422(new), 418(Himmelreich et al.,
1996) [Mycoplasma pneumoniae]
Length = 370
Score = 149 bits (376), Expect = 5e-35
Identities = 117/364 (32%), Positives = 190/364 (52%), Gaps = 29/364 (7%)
Query: 21 IAVLLSGGVDSSYSAYSLKEQGHELVGIYLK-----LHASEKKHDLY------------I 63
+ V +SGGVDS+ SA LK+Q E++GI+++ L+ + H +
Sbjct: 6 VFVGISGGVDSAVSALLLKQQYREVIGIFMECWDNTLNNDQLGHRAFNEHKSGCSSKEDF 65
Query: 64 KNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHA 123
+ AQ + LGI L + + + V+ I+A++ G TPNP LCN L+KFGL D+
Sbjct: 66 REAQAIAQLLGIKLIKQNLVEPYWKQVFLPTIDAFKNGLTPNPDMLCNRLIKFGLMRDYC 125
Query: 124 LKLGCEK-IATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLK 182
+L ATGHYA + + + DK KDQ+YFL ++ + +VFPL LLK
Sbjct: 126 KQLDPNSDFATGHYAALSWDNNQPLLAIPKDKHKDQTYFLAHVKPAQLQDVVFPLAHLLK 185
Query: 183 KDIKPLALNAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGE-VIG 240
+++ +AL A F ++ T K+S ICF+ E+ + D LK ++ V K GV+ + + + +G
Sbjct: 186 TEVRQIAL-AHHF--SVATKKDSTGICFIGERHFSDFLKNYLPV-KPGVIYDWKTQRQLG 241
Query: 241 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGK-KEDLATH--SLKAKNKSL 297
+H+G YT G+R G ++ G +FVV D K N L V EDL +L N
Sbjct: 242 SHEGVWFYTTGQRSGLNLGGQAARNFVVEKDLKTNTLYVSSDPEDLQRRGITLSHFNWLY 301
Query: 298 MKDFKDGEYFIKARYRSVPAKAHVSLK-DEVIEVGFKEPFYGVAKGQALVVY-KDDILLG 355
+ ++ R+ + H++++ + V++V +P V GQ V+Y ++ I LG
Sbjct: 302 QPNPLTQTVLVRIRHAQPLVQGHITVQPNNVVQVQLDQPIDRVTNGQYGVLYTQNGICLG 361
Query: 356 GGVI 359
G+I
Sbjct: 362 SGII 365
>ref|NP_593402.1| (NC_003424) probable trna methyltransferase [Schizosaccharomyces
pombe]
sp|O13947|TRMU_SCHPO Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||T38324 probable trna methyltransferase - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11659.1| (Z98977) probable trna methyltransferase [Schizosaccharomyces
pombe]
Length = 415
Score = 145 bits (367), Expect = 5e-34
Identities = 117/392 (29%), Positives = 191/392 (47%), Gaps = 52/392 (13%)
Query: 13 HNERLKM-----KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKH------DL 61
H+ RL+ K+ V +SGGVDSS+SAY LK QG+ + G++++ E +
Sbjct: 21 HSTRLQWPKSQDKVFVAMSGGVDSSFSAYLLKSQGYNVEGVFMRNWLDEDSAPSGCPAER 80
Query: 62 YIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALD 121
QK C+ L I +F+K++ + V++ ++ YE G TPNP CN +KFG AL
Sbjct: 81 DWATVQKVCKKLNISCRRFNFEKEYWNLVFEPSLDLYENGLTPNPDVSCNRQVKFG-ALF 139
Query: 122 HALKLGCEK-------IATGHYAR--VKEIDKISYIQEALDKTKDQSYFLYALEHEVIAK 172
ALK CE +A+GHYA+ V S++ DK KDQ+ FL + E + K
Sbjct: 140 DALKKHCENNVKGDWWLASGHYAKSVVNIETNESHMCIPTDKRKDQTLFLCTIRKEALEK 199
Query: 173 LVFPLGDLLKKDIKPLALNAMPFLGTLETYKESQEICFVE----KSYIDTLKKHVEVEKE 228
+FPL + K+++K A +A + +ESQ +CFV + + L++++
Sbjct: 200 TIFPLHNWTKENVKKQASSA--GFKEIAEKQESQGLCFVSPNVGRKFRKFLQRYLNFSDR 257
Query: 229 GVV----KNLQGEVIGTHKGYMQYTIGKRKGFSIKGALEPHF----VVGIDAKKNELVVG 280
+ KN+ GE G H G T+G+R G S+ A +F V D K N L +
Sbjct: 258 PIKVIAGKNVVGEFSGNH-GIWSLTVGERCGLSLPQAQSEYFGRWYVWKKDIKNNALYIC 316
Query: 281 KKEDLATHSLKAKNKSLMKDFK------------DGEYFIKARYRSVPAKAHVSLKD-EV 327
+ + L +KD+K F++ R++ A V+ ++ E
Sbjct: 317 RG---TNNELLMSKCIYLKDWKWCGTKLQNLEKSALSCFVRVRHQQPLQPAKVTWRNPES 373
Query: 328 IEVGFKEPFYGVAKGQALVVYKDDILLGGGVI 359
+++ F++ V GQ + VY +D+ LGGG++
Sbjct: 374 VKIHFQDKQRAVTPGQVIAVYVNDVCLGGGMV 405
>gb|EAA00244.1| (AAAB01008986) agCP9399 [Anopheles gambiae str. PEST]
Length = 387
Score = 145 bits (366), Expect = 7e-34
Identities = 97/284 (34%), Positives = 149/284 (52%), Gaps = 27/284 (9%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKL-----HASEKKHDLYIKNAQKACEFLG 74
++ V +SGGVDS+ SAY LK++G E+ G ++K + + ++AQ+ C L
Sbjct: 4 RVVVGISGGVDSAVSAYLLKKRGFEVCGAFMKNWDLIDESGYCSGEQDFEDAQRLCRTLN 63
Query: 75 IPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHAL-KLGCEKIAT 133
IPLE ++F KD+ V+ F+ YE G TPNP LCN +KF HA +LG + IAT
Sbjct: 64 IPLEEINFVKDYWVEVFGNFLKDYEAGITPNPDILCNRHIKFNRFFHHARERLGADAIAT 123
Query: 134 GHYARV---------KEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKD 184
GHYAR E +K+ + A D KDQ++FL + E + + +FP+G L K
Sbjct: 124 GHYARTNFGPFLERYNENEKVRLLM-APDPIKDQTFFLSQISAEALRRTMFPIGALTKPQ 182
Query: 185 IKPLALNAMPFLGTLETY---KESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIG 240
+K LA+ LE Y KES ICFV ++S+ + +++E + V G +G
Sbjct: 183 VKRLAIEV-----GLEAYARKKESMGICFVGKRSFQQFIGEYIETKPGPFVDVDSGREVG 237
Query: 241 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKED 284
H G +T+G++ I G +P++V+ N + V D
Sbjct: 238 QHAGLHHWTVGQK--CKIGGCPQPYYVLRKHRASNVIEVASGHD 279
>gb|AAF45578.2| (AE003419) EG:BACR7A4.8 gene product [Drosophila melanogaster]
Length = 382
Score = 144 bits (364), Expect = 1e-33
Identities = 93/287 (32%), Positives = 161/287 (55%), Gaps = 23/287 (8%)
Query: 21 IAVLLSGGVDSSYSAYSLKEQGHELVGIYLKL-----HASEKKHDLYIKNAQKACEFLGI 75
+ V +SGGVDS+ SA+ L EQG +++G++++ + +K+A+ AC LG+
Sbjct: 5 VVVGVSGGVDSAVSAHLLAEQGFKVLGVFMRNWDEADEVGRCSGEADLKDAEWACRQLGV 64
Query: 76 PLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALK-LGCEKIATG 134
L +++ +++ +AV+ +F++ Y+ G TPNP LCN +KF L HAL+ LG + +ATG
Sbjct: 65 ELRQVNYVREYWTAVFSQFLDDYQMGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATG 124
Query: 135 HYAR---VKEIDKISYIQEA-----LDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIK 186
HYAR ++ I+ +A D KDQ++FL + + + + +FPLGD K +K
Sbjct: 125 HYARNSLGNYLEGIASNNDARLLIPADTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVK 184
Query: 187 PLALNAMPFLGTLETYKESQEICFV-EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGY 245
LA L KES ICFV ++++ D +++++ ++ + G V+G H+G
Sbjct: 185 DLAKKI--GFQRLAKKKESTGICFVGKRNFKDFIQEYITSKRGPFLDIDSGAVVGHHEGI 242
Query: 246 MQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKED----LATH 288
Q+T+G+R + L+P+FV +A N + V + L+TH
Sbjct: 243 HQWTVGQR--CRLSSFLQPYFVARKEAASNTIYVASGHNHPALLSTH 287
>pir||T18663 hypothetical protein B0035.16 - Caenorhabditis elegans
Length = 369
Score = 123 bits (308), Expect = 4e-27
Identities = 82/248 (33%), Positives = 133/248 (53%), Gaps = 20/248 (8%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIKNAQKACEFLGIPLEV 79
++ + +SGGVDS+ SA+ LK++G +++G++++ S +A+ C+ L IP
Sbjct: 3 RVVIGMSGGVDSAVSAFLLKKRGFDVIGLHMEEGTSHCPRSKDESDARNVCDRLNIPFHT 62
Query: 80 LDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHAL-KLGCEKIATGHYA- 137
++F K++ + V+ +F+ Y+ G+T P CN +KF + A K + IATGHYA
Sbjct: 63 VNFVKEYWNDVFLKFLENYKNGRTTVPDIDCNQSIKFDVFHKIAREKFNADFIATGHYAT 122
Query: 138 --------RVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLA 189
K+ D+I + D KDQ++FL + E + + +FPLG L K ++K +A
Sbjct: 123 TNFGDFQQNAKDSDEIR-LFSGKDPLKDQTFFLCTVNQEQLKRAMFPLGSLQKSEVKRIA 181
Query: 190 LNAMPFLGTLETYK--ESQEICFV--EKSYIDTLKKHVEVEKEGVVKNLQGEVIGTHKGY 245
G E K ES ICF+ +K + D L +++E K G + G IG H G
Sbjct: 182 EEQ----GFQEVAKKPESMGICFIGKKKRFSDFLDEYIE-PKPGRILLKNGSEIGNHHGI 236
Query: 246 MQYTIGKR 253
Q+TIGKR
Sbjct: 237 HQFTIGKR 244
>ref|NP_502120.1| (NM_069719) Haemophilus hypothetical protein HI1074 like
[Caenorhabditis elegans]
sp|Q17440|TRMU_CAEEL Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
emb|CAA97418.2| (Z73102) Similarity to Haemophilus hypothetical protein HI0174
(SW:YCFB_HAEIN) [Caenorhabditis elegans]
Length = 375
Score = 118 bits (296), Expect = 9e-26
Identities = 83/257 (32%), Positives = 134/257 (51%), Gaps = 32/257 (12%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYL---------KLHASEKKHDLYIKNAQKAC 70
++ + +SGGVDS+ SA+ LK++G +++G+++ H K + +A+ C
Sbjct: 3 RVVIGMSGGVDSAVSAFLLKKRGFDVIGLHMINWDVQEEGTSHCPRSKDE---SDARNVC 59
Query: 71 EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHAL-KLGCE 129
+ L IP ++F K++ + V+ +F+ Y+ G+T P CN +KF + A K +
Sbjct: 60 DRLNIPFHTVNFVKEYWNDVFLKFLENYKNGRTTVPDIDCNQSIKFDVFHKIAREKFNAD 119
Query: 130 KIATGHYA---------RVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDL 180
IATGHYA K+ D+I + D KDQ++FL + E + + +FPLG L
Sbjct: 120 FIATGHYATTNFGDFQQNAKDSDEIR-LFSGKDPLKDQTFFLCTVNQEQLKRAMFPLGSL 178
Query: 181 LKKDIKPLALNAMPFLGTLETYK--ESQEICFV--EKSYIDTLKKHVEVEKEGVVKNLQG 236
K ++K +A G E K ES ICF+ +K + D L +++E K G + G
Sbjct: 179 QKSEVKRIAEEQ----GFQEVAKKPESMGICFIGKKKRFSDFLDEYIE-PKPGRILLKNG 233
Query: 237 EVIGTHKGYMQYTIGKR 253
IG H G Q+TIGKR
Sbjct: 234 SEIGNHHGIHQFTIGKR 250
>ref|NP_010251.1| (NC_001136) Hypothetical ORF; Ydl033cp [Saccharomyces cerevisiae]
sp|Q12093|TRMU_YEAST PROBABLE TRNA
(5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
pir||S67566 probable membrane protein YDL033c - yeast (Saccharomyces
cerevisiae)
emb|CAA96456.1| (Z71781) unknown [Saccharomyces cerevisiae]
emb|CAA98591.1| (Z74081) ORF YDL033c [Saccharomyces cerevisiae]
Length = 417
Score = 109 bits (272), Expect = 6e-23
Identities = 102/383 (26%), Positives = 174/383 (44%), Gaps = 48/383 (12%)
Query: 21 IAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK---------HDLYIKNAQKACE 71
+ V +S GVDSS +A + G+Y++ + + ++ ++ + +
Sbjct: 29 VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88
Query: 72 FLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLA---LDHALKLGC 128
L I ++ ++F++D+ V++ + Y EG TPNP CN +KFG LD G
Sbjct: 89 HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDEKYGTGN 148
Query: 129 EKIATGHYARVKEI---DKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 185
+ TGHYARV + + ++ ++ + KDQSY+L + V++ L+ P+G L K ++
Sbjct: 149 YWLVTGHYARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPIGHLTKPEV 208
Query: 186 KPLALNAMPFLGTLETYKESQEICFVEKSYIDTLK---KHVEVEKEGVVKNLQGE----- 237
+ LA A L T E +SQ ICFV S K KH G + + +
Sbjct: 209 RDLAKYA--GLPTAEK-PDSQGICFVNNSQHGKFKNFLKHYLPSSPGDIITVDPQSGAKT 265
Query: 238 VIGTHKGYMQYTIGKRKGFSIKGALEPH-----FVVGIDAKKNELVVGKKED---LATHS 289
G H G YTIG++ G S+ A +P+ FV NE+++ + D L + +
Sbjct: 266 TWGRHDGLWSYTIGQKVGISMPQA-DPNYQGTWFVSEKLRDTNEILIVRGRDNPALYSDT 324
Query: 290 LKAKNKSLMKDFKD--------GEYFIKARYRSVP-----AKAHVSLKDEVIEVGFKEPF 336
++ +N S + +D G ++ R VP K + S + I +
Sbjct: 325 MRIENFSSLGPREDTINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITIHLASKQ 384
Query: 337 YGVAKGQALVVYKDDILLGGGVI 359
+ GQ+ +Y DD +LG G I
Sbjct: 385 RAITPGQSCCLYIDDRVLGSGPI 407
>ref|NP_060476.1| (NM_018006) hypothetical protein FLJ10140 [Homo sapiens]
dbj|BAA91462.1| (AK001002) unnamed protein product [Homo sapiens]
Length = 166
Score = 93.6 bits (231), Expect = 3e-18
Identities = 47/130 (36%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 21 IAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKH-----DLYIKNAQKACEFLGI 75
+ LSGGVDS+ +A L+ +G+++ G+++K S +H D ++A + C+ L I
Sbjct: 7 VVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRVCQILDI 66
Query: 76 PLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHAL-KLGCEKIATG 134
P + + K++ + V+ +F+N YE+G+TPNP +CN +KF +A+ LG + IATG
Sbjct: 67 PFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAIATG 126
Query: 135 HYARVKEIDK 144
HYAR D+
Sbjct: 127 HYARTSLEDE 136
>pir||S19210 hypothetical protein 15 - Escherichia coli
emb|CAA41994.1| (X59307) ORF-15 [Escherichia coli]
Length = 133
Score = 57.4 bits (137), Expect = 3e-07
Identities = 46/129 (35%), Positives = 64/129 (48%), Gaps = 19/129 (14%)
Query: 246 MQYTIGKRKGFSI----KGALEPHFVVGIDAKKNELVVGKKED---LATHSLKAKNKSLM 298
M +T+G+RKG I +G EP +VV D + N LVV + + L + L A+ +
Sbjct: 1 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 60
Query: 299 KDFKDGEYF-------IKARYRSVPAKAHV-SLKDEVIEVGFKEPFYGVAKGQALVVYKD 350
D E F +K RYR V +L D+ IEV F EP V GQ+ V Y
Sbjct: 61 ----DREPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 116
Query: 351 DILLGGGVI 359
++ LGGG+I
Sbjct: 117 EVCLGGGII 125
>ref|NP_563126.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81916.1| (AP003193) conserved hypothetical protein [Clostridium perfringens]
Length = 326
Score = 55.8 bits (133), Expect = 7e-07
Identities = 40/138 (28%), Positives = 72/138 (51%), Gaps = 13/138 (9%)
Query: 24 LLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIKNAQKACEFLGIPLEVLDFQ 83
++SGG+DS +A +K+QG E++GI K + + +NA++ C+ + +PLEV+DF
Sbjct: 7 MVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNE------ENAKRMCKQIDMPLEVVDFS 60
Query: 84 KDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATGHYARVKEID 143
++ V D + G+ NPC C+ +M + + K + I TG +
Sbjct: 61 EEHFEMVKDP---KHGRGKNMNPCIDCHAMM-MRYSGELLKKFDADFIITGEVLNQR--- 113
Query: 144 KISYIQEALDKTKDQSYF 161
+S ++AL+ K +S F
Sbjct: 114 PMSQNRQALNTVKKESGF 131
>ref|NP_603460.1| (NC_003454) tRNA (5-methylaminomethyl-2-thiouridylate)
-methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94759.1| (AE010567) putative tRNA (5-methylaminomethyl-2-thiouridylate)
-methyltransferase; fibronectin/fibrinogen-binding
protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 333
Score = 55.8 bits (133), Expect = 7e-07
Identities = 47/159 (29%), Positives = 77/159 (47%), Gaps = 11/159 (6%)
Query: 18 KMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIKNAQKACEFLGIPL 77
K+K L SGG+DS+ + ++EQG E++ + H K++ A+ + LGI L
Sbjct: 3 KIKALALFSGGLDSALAIKVVQEQGIEVIALNFVSHFFGGKNE----KAESMAKQLGIRL 58
Query: 78 EVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATGHYA 137
E +DF+K V D Y G+ NPC C+ LM F +A + + G + +G
Sbjct: 59 EYIDFKKRHILVVEDP---VYGRGKNMNPCIDCHSLM-FKIAGELLEEYGASFVISGEVL 114
Query: 138 RVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFP 176
+ + + S +AL+K K S + + AKL+ P
Sbjct: 115 GQRPMSQNS---QALEKVKKLSGMEDLVLRPLSAKLLPP 150
>ref|NP_213608.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||C70377 hypothetical protein aq_898 - Aquifex aeolicus
gb|AAC07016.1| (AE000713) putative protein [Aquifex aeolicus]
Length = 251
Score = 55.5 bits (132), Expect = 1e-06
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 17/129 (13%)
Query: 18 KMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYL-----------KLHASEKKHDLYIKNA 66
K K LLSGG+DSS + ++EQG E+ + +L +++ Y+ A
Sbjct: 3 KRKALALLSGGLDSSLAVKLVQEQGIEVKAFHFYTGFCITEFKRRLGQTKEDGSPYVNPA 62
Query: 67 QKACEFLGIPLEVLDFQKDFKSAVYDEFIN-AYEEGQTPNPCALCNPLMKFGLALDHALK 125
KA LG+P+E++D +++ YD IN Y G+ NPC C +M A + K
Sbjct: 63 IKAAAQLGVPIEIVDISEEY----YDVVINPKYGYGKNVNPCVDCR-IMMLKKAKEIMEK 117
Query: 126 LGCEKIATG 134
G + I TG
Sbjct: 118 EGYDFIVTG 126
>ref|NP_578002.1| (NC_003413) n-type ATP pyrophosphatase superfamily [Pyrococcus
furiosus DSM 3638]
gb|AAL80397.1| (AE010151) n-type ATP pyrophosphatase superfamily [Pyrococcus
furiosus DSM 3638]
Length = 283
Score = 51.2 bits (121), Expect = 2e-05
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 15/119 (12%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASE--KKHDLYIKNAQKACEFLGIPL 77
+I V +SGG DS+ +AY LK+ G+++ ++L L E +K ++Y A+K CEF+G PL
Sbjct: 31 RILVAVSGGKDSAVTAYVLKKLGYKIECLHLNLGIGEYSEKSEIY---AKKQCEFIGAPL 87
Query: 78 EVLDFQKDFKSAVYDEFINAYEEGQTPNP-CALCNPLMKFGLALDHALKLGCEKIATGH 135
++ ++ + E +T P C+ C L K + A G + +ATGH
Sbjct: 88 NIIRVKELLGYGI--------GEVRTSRPTCSYCG-LTKRYIMNKFAYDNGFDAVATGH 137
>ref|NP_621776.1| (NC_003869) predicted ATPase of the PP-loop superfamily implicated
in cell cycle control [Thermoanaerobacter tengcongensis]
gb|AAM23380.1| (AE012981) predicted ATPase of the PP-loop superfamily implicated
in cell cycle control [Thermoanaerobacter tengcongensis]
Length = 301
Score = 50.1 bits (118), Expect = 4e-05
Identities = 32/119 (26%), Positives = 61/119 (50%), Gaps = 8/119 (6%)
Query: 18 KMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLYIKN-AQKACEFLGIP 76
K ++ V +SGG DS +AY LK G+E++G ++ L ++ + + C+ IP
Sbjct: 47 KGRVVVAISGGKDSLVTAYVLKRLGYEVLGFFVDLGITQNDFSPRSREVVENFCKEHDIP 106
Query: 77 LEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKIATGH 135
LE++D ++ + + + + CA+C + K L ++AL + + +ATGH
Sbjct: 107 LEIVDLKERYGKDIPE------VAKRQDRICAICG-VTKRHLMNEYALSVNADALATGH 158
>ref|NP_561906.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB80696.1| (AP003188) conserved hypothetical protein [Clostridium perfringens]
Length = 244
Score = 48.5 bits (114), Expect = 1e-04
Identities = 42/125 (33%), Positives = 58/125 (45%), Gaps = 26/125 (20%)
Query: 20 KIAVLLSGGVDSSYSAYSLKE------QGHELVGIYLKLHASEKK--HDLYIKNAQKACE 71
KIAV LSGG DS + LK + EL+ I L + H+L C+
Sbjct: 26 KIAVGLSGGKDSLTLLHILKNYQRFSPEKFELIAITLNPGGVDNSPLHEL--------CK 77
Query: 72 FLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEKI 131
+ +P + Q D K V+D + NPC+LC L + G D+A KLGC K+
Sbjct: 78 NIDVPF--YEIQTDIKEIVFDI-------KKEKNPCSLCANLRR-GALNDNAEKLGCNKV 127
Query: 132 ATGHY 136
A GH+
Sbjct: 128 ALGHH 132
>ref|NP_142287.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||F71455 hypothetical protein PH0300 - Pyrococcus horikoshii
dbj|BAA29373.1| (AP000001) 310aa long hypothetical protein [Pyrococcus horikoshii]
Length = 310
Score = 48.5 bits (114), Expect = 1e-04
Identities = 41/134 (30%), Positives = 66/134 (48%), Gaps = 23/134 (17%)
Query: 7 RLRAITHNERLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHAS--EKKHDLYIK 64
R + +T +ER I V +SGG DS+ +AY LK+ G+ + +++ L S +K + Y
Sbjct: 40 RYKLLTKDER----ILVAVSGGKDSAVTAYVLKKLGYNIECLHINLGISGYSEKSEEY-- 93
Query: 65 NAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPN---PCALCNPLMKFGLALD 121
A+K C+ +G PL ++ ++ I Y G+ PC+ C L K +
Sbjct: 94 -AKKQCKLIGAPLHIVRIKE----------ILGYGIGEVKTRRPPCSYCG-LTKRYIMNK 141
Query: 122 HALKLGCEKIATGH 135
A G + IATGH
Sbjct: 142 FAYDNGFDAIATGH 155
>ref|NP_248152.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q58558|YB57_METJA Hypothetical protein MJ1157
pir||E64444 hypothetical protein MJ1157 - Methanococcus jannaschii
gb|AAB99161.1| (U67558) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 341
Score = 47.4 bits (111), Expect = 3e-04
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 20/224 (8%)
Query: 16 RLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----HDLYIKNAQKACE 71
R +KI + +SGG DS AY LKE + L ++ ++ K ++ C+
Sbjct: 80 RNNVKIGIGISGGKDSLVMAYILKELFKHIPNAKLICFFVDEGIKGFRNIAEKYVKEFCK 139
Query: 72 FLGIPLEVLDFQKDFKSAVYDEFINAY-EEGQTPNPCALCNPLMKFGLALDHALKLGCEK 130
+ L+++ F+ + + + N Y + PC+ C + ++ L HALK GC+
Sbjct: 140 EYNLDLKIIKFEDEIGYTLDEIVKNDYLSKLNIGKPCSFCGVVRRY-LLNKHALKEGCDY 198
Query: 131 IATGHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLAL 190
+A GH + + + + K+ F E K + PL + ++++K A
Sbjct: 199 LAIGH--NLDDFCQTILMNYVEGNIKNIIQFGKEFEGGGFVKRIKPLKLIPEEEVKLYA- 255
Query: 191 NAMPFLGTLETYKESQEIC-FVEKSYIDTLKKHVEV---EKEGV 230
+ K +E C + SY +KK +E+ EK GV
Sbjct: 256 -------EINNIKYQREPCPYSSLSYRHRMKKVIEILEEEKPGV 292
>ref|NP_127340.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||D75016 hypothetical protein PAB1092 - Pyrococcus abyssi (strain Orsay)
emb|CAB50570.1| (AJ248288) hypothetical protein [Pyrococcus abyssi]
Length = 303
Score = 47.0 bits (110), Expect = 3e-04
Identities = 38/119 (31%), Positives = 59/119 (48%), Gaps = 15/119 (12%)
Query: 20 KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASE--KKHDLYIKNAQKACEFLGIPL 77
KI V +SGG DS+ +AY L + G+ + +++ L E KK + Y A+K CE +G PL
Sbjct: 49 KILVAVSGGKDSAVTAYVLNKLGYNIECLHINLGIGEYSKKSEEY---AKKQCELIGAPL 105
Query: 78 EVLDFQKDFKSAVYDEFINAYEEGQTPNP-CALCNPLMKFGLALDHALKLGCEKIATGH 135
++ ++ + E +T P C+ C L K + A G + IATGH
Sbjct: 106 HIVRIKEILGYGI--------GEVKTRRPTCSYCG-LTKRYIMNKFAYDNGFDAIATGH 155
>gb|EAA02326.1| (AAAB01003560) agCP4005 [Anopheles gambiae str. PEST]
Length = 74
Score = 45.8 bits (107), Expect = 8e-04
Identities = 25/70 (35%), Positives = 45/70 (63%), Gaps = 7/70 (10%)
Query: 18 KMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY------IKNAQKACE 71
++K+ V +SGGVDSS SAY L++QG+++ G+++K + E D Y + +A+ C+
Sbjct: 6 QIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK-NWEEDDTDEYCSAAQDLADAKAVCD 64
Query: 72 FLGIPLEVLD 81
LG+ L ++
Sbjct: 65 KLGMKLHTIN 74
>ref|NP_341593.1| (NC_002754) Transcription regulator (exsB) related protein
[Sulfolobus solfataricus]
gb|AAK40383.1| (AE006643) Transcription regulator (exsB) related protein
[Sulfolobus solfataricus]
Length = 464
Score = 44.7 bits (104), Expect = 0.002
Identities = 64/239 (26%), Positives = 107/239 (43%), Gaps = 37/239 (15%)
Query: 15 ERLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLH--ASEKKHDLYIKNAQKACEF 72
+R K ++ V+ SGG+DS+ +A L +GHE+ I+ H A EK+ + +K E+
Sbjct: 238 KRKKYRVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEEKEREA----VRKIAEY 293
Query: 73 LGIPLEVLDFQKD-FKSAVYDEFINA---------YEEG-QTPNPCALCNPLMKFGLALD 121
L IPL L+ D FK + I EEG + + L+ F ++L
Sbjct: 294 LQIPL--LEINTDLFKIIGHATLIKGGGEIVKDRKGEEGAEFAHEWVPARNLIFFSVSLA 351
Query: 122 HALKLGCEKIATG---HYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLG 178
A G + IA+G A +++ +I+ L+K YA +++ P+G
Sbjct: 352 IAEAYGYDAIASGINLEEAGAYPDNEMEFIR-MLNKLSP-----YATGPNKRIEILMPVG 405
Query: 179 DLLKKDIKPLALN-AMPFLGTLETYKESQE------ICFVEKS--YIDTLKKHVEVEKE 228
+L+K +I L P T Y+ Q+ C++ K I+ LK VE ++E
Sbjct: 406 NLVKHEIVKLGYEIGAPLHLTWSCYEGGQKHCGKCGPCYMRKMAFRINGLKDPVEYDEE 464
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.139 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 226,436,214
Number of Sequences: 1026957
Number of extensions: 9490126
Number of successful extensions: 24744
Number of sequences better than 1.0e-02: 97
Number of HSP's better than 0.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 24294
Number of HSP's gapped (non-prelim): 98
length of query: 360
length of database: 324,149,939
effective HSP length: 122
effective length of query: 238
effective length of database: 198,861,185
effective search space: 47328962030
effective search space used: 47328962030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 98 (42.4 bits)