BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645949|ref|NP_208128.1| hypothetical protein
[Helicobacter pylori 26695]
(253 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208128.1| (NC_000915) hypothetical protein [Helicoba... 516 e-146
ref|NP_223973.1| (NC_000921) putative [Helicobacter pylori ... 506 e-143
ref|NP_282106.1| (NC_002163) putative dnaJ-like protein [Ca... 49 5e-05
ref|NP_498902.1| (NM_066501) F22B7.5a.p [Caenorhabditis ele... 47 2e-04
sp|P34408|YLW5_CAEEL Hypothetical protein F22B7.5 in chromo... 47 2e-04
ref|NP_498901.1| (NM_066500) F22B7.5b.p [Caenorhabditis ele... 47 2e-04
ref|NP_573044.1| (NM_132816) CG7872 gene product [Drosophil... 45 0.001
ref|NP_116638.1| (NC_001138) involved in protection against... 44 0.001
gb|EAA11779.1| (AAAB01008960) agCP6258 [Anopheles gambiae s... 44 0.002
ref|NP_213481.1| (NC_000918) chaperone DnaJ [Aquifex aeolic... 44 0.002
ref|NP_347285.1| (NC_003030) Molecular chaperone, DnaJ fami... 43 0.003
ref|NP_359869.1| (NC_003103) dnaJ protein [Rickettsia conor... 42 0.005
ref|NP_488395.1| (NC_003272) similar to DnaJ protein [Nosto... 42 0.005
ref|NP_502126.1| (NM_069725) DNAJ protein like [Caenorhabdi... 42 0.005
ref|NP_587824.1| (NC_003421) hypothetical protein [Schizosa... 42 0.005
gb|EAA04033.1| (AAAB01008807) agCP3837 [Anopheles gambiae s... 42 0.006
ref|NP_072862.1| (NC_000908) dnaJ-like protein [Mycoplasma ... 42 0.008
gb|AAM43823.1|AF281816_4 (AF281816) DnaJ [Acholeplasma laid... 42 0.008
gb|EAA12149.1| (AAAB01008963) agCP9096 [Anopheles gambiae s... 42 0.008
>ref|NP_208128.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64686 hypothetical protein HP1336 - Helicobacter pylori (strain 26695)
gb|AAD08390.1| (AE000635) H. pylori predicted coding region HP1336 [Helicobacter
pylori 26695]
Length = 253
Score = 516 bits (1329), Expect = e-146
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MAKIELLAKFTQIALPNSHPLLKKVLNYAKKHFSQCHMLSSSLLILNDTECFKKNYLLNW 60
MAKIELLAKFTQIALPNSHPLLKKVLNYAKKHFSQCHMLSSSLLILNDTECFKKNYLLNW
Sbjct: 1 MAKIELLAKFTQIALPNSHPLLKKVLNYAKKHFSQCHMLSSSLLILNDTECFKKNYLLNW 60
Query: 61 VYHALECVHEKDISAHSLEEVLQKSHLPIRIKIMAQNTLLEKIEVKVLTFGAEYALFITK 120
VYHALECVHEKDISAHSLEEVLQKSHLPIRIKIMAQNTLLEKIEVKVLTFGAEYALFITK
Sbjct: 61 VYHALECVHEKDISAHSLEEVLQKSHLPIRIKIMAQNTLLEKIEVKVLTFGAEYALFITK 120
Query: 121 HPIAKRFLRQKFSGCVFLETQDELHIRGDSERFWELIVTLNENRIVHNACLDFIYPNGFG 180
HPIAKRFLRQKFSGCVFLETQDELHIRGDSERFWELIVTLNENRIVHNACLDFIYPNGFG
Sbjct: 121 HPIAKRFLRQKFSGCVFLETQDELHIRGDSERFWELIVTLNENRIVHNACLDFIYPNGFG 180
Query: 181 KDSYTTMAERKLKECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFA 240
KDSYTTMAERKLKECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFA
Sbjct: 181 KDSYTTMAERKLKECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFA 240
Query: 241 IIQEAYRHIKKHA 253
IIQEAYRHIKKHA
Sbjct: 241 IIQEAYRHIKKHA 253
>ref|NP_223973.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71829 hypothetical protein jhp1255 - Helicobacter pylori (strain J99)
gb|AAD06841.1| (AE001549) putative [Helicobacter pylori J99]
Length = 253
Score = 506 bits (1303), Expect = e-143
Identities = 247/253 (97%), Positives = 249/253 (97%)
Query: 1 MAKIELLAKFTQIALPNSHPLLKKVLNYAKKHFSQCHMLSSSLLILNDTECFKKNYLLNW 60
MAKIELLAKFTQIALPNSHPLLKKVLNYAKKHFSQCHMLSSSLLILNDTECFKKNYLLNW
Sbjct: 1 MAKIELLAKFTQIALPNSHPLLKKVLNYAKKHFSQCHMLSSSLLILNDTECFKKNYLLNW 60
Query: 61 VYHALECVHEKDISAHSLEEVLQKSHLPIRIKIMAQNTLLEKIEVKVLTFGAEYALFITK 120
VYHALEC HEKDIS HSLEE+LQKSHLPIRIKIMAQNTLLEKIEVKVLTFGAEYALFITK
Sbjct: 61 VYHALECAHEKDISMHSLEEILQKSHLPIRIKIMAQNTLLEKIEVKVLTFGAEYALFITK 120
Query: 121 HPIAKRFLRQKFSGCVFLETQDELHIRGDSERFWELIVTLNENRIVHNACLDFIYPNGFG 180
HPIAKRFLRQKFSGCVFLETQDELHIRGDSERFWELIVTLNENRIVHNACLDFIYPNGFG
Sbjct: 121 HPIAKRFLRQKFSGCVFLETQDELHIRGDSERFWELIVTLNENRIVHNACLDFIYPNGFG 180
Query: 181 KDSYTTMAERKLKECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFA 240
KDSYTTMAERKLKECYK LGFIKHE+FSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFA
Sbjct: 181 KDSYTTMAERKLKECYKALGFIKHENFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFA 240
Query: 241 IIQEAYRHIKKHA 253
IIQEAY HIKKHA
Sbjct: 241 IIQEAYSHIKKHA 253
>ref|NP_282106.1| (NC_002163) putative dnaJ-like protein [Campylobacter jejuni]
pir||A81370 probable dnaJ-like protein Cj0954c [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73211.1| (AL139076) putative dnaJ-like protein [Campylobacter jejuni]
Length = 256
Score = 48.9 bits (115), Expect = 5e-05
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 185 TTMAERKLKECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDL----KEKKALYAKRFA 240
+T E L E + L + D + VKK+Y LAK YHPD+ + +E+ + ++F
Sbjct: 182 STKKELSLDEAFAILELPNNADLNAVKKQYRNLAKKYHPDILNANNVSEEELKIGVEKFQ 241
Query: 241 IIQEAYRHIKKH 252
I EAY +KKH
Sbjct: 242 KINEAYEKVKKH 253
>ref|NP_498902.1| (NM_066501) F22B7.5a.p [Caenorhabditis elegans]
gb|AAK68342.1|L12018_7 (L12018) C. elegans DNJ-10 protein (corresponding sequence
F22B7.5a) [Caenorhabditis elegans]
Length = 456
Score = 47.0 bits (110), Expect = 2e-04
Identities = 28/63 (44%), Positives = 36/63 (56%), Gaps = 5/63 (7%)
Query: 184 YTTMAERKLKECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQ 243
+TT A K ++ YKTLG K D +KK Y +LAK YHPD+ KE + +F I
Sbjct: 35 HTTHALSK-EDYYKTLGVDKKSDAKAIKKAYFQLAKKYHPDVNKTKEAQT----KFQEIS 89
Query: 244 EAY 246
EAY
Sbjct: 90 EAY 92
>sp|P34408|YLW5_CAEEL Hypothetical protein F22B7.5 in chromosome III
pir||S44636 f22b7.5 protein - Caenorhabditis elegans
Length = 943
Score = 47.0 bits (110), Expect = 2e-04
Identities = 28/63 (44%), Positives = 36/63 (56%), Gaps = 5/63 (7%)
Query: 184 YTTMAERKLKECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQ 243
+TT A K ++ YKTLG K D +KK Y +LAK YHPD+ KE + +F I
Sbjct: 522 HTTHALSK-EDYYKTLGVDKKSDAKAIKKAYFQLAKKYHPDVNKTKEAQT----KFQEIS 576
Query: 244 EAY 246
EAY
Sbjct: 577 EAY 579
>ref|NP_498901.1| (NM_066500) F22B7.5b.p [Caenorhabditis elegans]
gb|AAK68343.1|L12018_8 (L12018) C. elegans DNJ-10 protein (corresponding sequence
F22B7.5b) [Caenorhabditis elegans]
Length = 446
Score = 47.0 bits (110), Expect = 2e-04
Identities = 28/63 (44%), Positives = 36/63 (56%), Gaps = 5/63 (7%)
Query: 184 YTTMAERKLKECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQ 243
+TT A K ++ YKTLG K D +KK Y +LAK YHPD+ KE + +F I
Sbjct: 35 HTTHALSK-EDYYKTLGVDKKSDAKAIKKAYFQLAKKYHPDVNKTKEAQT----KFQEIS 89
Query: 244 EAY 246
EAY
Sbjct: 90 EAY 92
>ref|NP_573044.1| (NM_132816) CG7872 gene product [Drosophila melanogaster]
gb|AAF48476.1| (AE003499) CG7872 gene product [Drosophila melanogaster]
gb|AAL13785.1| (AY058556) LD24870p [Drosophila melanogaster]
Length = 333
Score = 44.7 bits (104), Expect = 0.001
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 193 KECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQEAYRHIK 250
+ CY LG + SE+ K Y +LA+ YHPDL E KA +F ++ AY ++
Sbjct: 30 ENCYDVLGVTRESSKSEIGKAYRQLARRYHPDLHRGAEAKAAAETQFKLVATAYEILR 87
>ref|NP_116638.1| (NC_001138) involved in protection against heat-induced protein
aggregation but not necessary for protein import into
the mitochondrion; Mdj1p [Saccharomyces cerevisiae]
sp|P35191|MDJ1_YEAST MDJ1 protein, mitochondrial precursor
pir||S38898 heat shock protein MDJ1 precursor - yeast (Saccharomyces
cerevisiae)
emb|CAA82189.1| (Z28336) Mdj1p heat shock protein [Saccharomyces cerevisiae]
emb|CAA86351.1| (Z46255) mdj1, len: 511, CAI: 0.17, MDJ1_YEAST P35191 MDJ1 PROTEIN
PRECURSOR [Saccharomyces cerevisiae]
dbj|BAA09222.1| (D50617) MDJ1 protein precursor [Saccharomyces cerevisiae]
Length = 511
Score = 44.3 bits (103), Expect = 0.001
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 181 KDSYTTMAERK---LKECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAK 237
K S+ T A R K+ Y TLG K +E+KK Y +LAK YHPD+ K+ K
Sbjct: 45 KSSFHTSAIRNNEAFKDPYDTLGLKKSATGAEIKKAYYKLAKKYHPDI----NKEPDAEK 100
Query: 238 RFAIIQEAY 246
+F +Q AY
Sbjct: 101 KFHDLQNAY 109
>gb|EAA11779.1| (AAAB01008960) agCP6258 [Anopheles gambiae str. PEST]
Length = 403
Score = 43.9 bits (102), Expect = 0.002
Identities = 28/78 (35%), Positives = 38/78 (47%), Gaps = 11/78 (14%)
Query: 180 GKDSYTTMAERKL---KECYKTLGFIKHEDFSEVKKRYLELAKTYHPDL--------CDL 228
GK S + K+ K+ Y LG + F+++KK Y ELAK +HPD
Sbjct: 42 GKSSSKAVPPPKVTPPKDFYAVLGVSRTASFNDIKKAYYELAKQFHPDRRTAQQNSNSTA 101
Query: 229 KEKKALYAKRFAIIQEAY 246
KE A K+F+ I EAY
Sbjct: 102 KESTAAMEKKFSQITEAY 119
>ref|NP_213481.1| (NC_000918) chaperone DnaJ [Aquifex aeolicus]
sp|O66921|DNJ2_AQUAE Chaperone protein dnaJ-2
pir||E70361 chaperone DnaJ - Aquifex aeolicus
gb|AAC06881.1| (AE000703) chaperone DnaJ [Aquifex aeolicus]
Length = 376
Score = 43.9 bits (102), Expect = 0.002
Identities = 23/61 (37%), Positives = 33/61 (53%), Gaps = 4/61 (6%)
Query: 187 MAERKLKECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQEAY 246
MA K+ Y+ LG ++ E+KK Y L + YHPD+C KK ++F I EAY
Sbjct: 1 MASSTKKDYYEILGVPRNASQEEIKKAYRRLVRKYHPDIC----KKPECEEKFKEINEAY 56
Query: 247 R 247
+
Sbjct: 57 Q 57
>ref|NP_347285.1| (NC_003030) Molecular chaperone, DnaJ family (contain C-term. Zn
finger domain) [Clostridium acetobutylicum]
gb|AAK78625.1|AE007580_5 (AE007580) Molecular chaperone, DnaJ family (contain C-term. Zn
finger domain) [Clostridium acetobutylicum]
Length = 195
Score = 43.1 bits (100), Expect = 0.003
Identities = 23/56 (41%), Positives = 29/56 (51%)
Query: 196 YKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQEAYRHIKK 251
YK LG ++ E+KK Y ELAK YHPD K L ++ I EAY + K
Sbjct: 5 YKVLGLNENASPDEIKKAYRELAKKYHPDQYGNNPLKTLAEEKMREINEAYDFLMK 60
>ref|NP_359869.1| (NC_003103) dnaJ protein [Rickettsia conorii]
gb|AAL02770.1| (AE008590) dnaJ protein [Rickettsia conorii]
Length = 373
Score = 42.4 bits (98), Expect = 0.005
Identities = 23/55 (41%), Positives = 32/55 (57%), Gaps = 4/55 (7%)
Query: 196 YKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQEAYRHIK 250
Y+ LG K +++KK YL+LAK YHPD D K+ + K+F I AY +K
Sbjct: 6 YQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAE----KKFKEINAAYDVLK 56
>ref|NP_488395.1| (NC_003272) similar to DnaJ protein [Nostoc sp. PCC 7120]
dbj|BAB76054.1| (AP003596) ORF_ID:all4355~similar to DnaJ protein [Nostoc sp. PCC
7120]
Length = 207
Score = 42.4 bits (98), Expect = 0.005
Identities = 22/58 (37%), Positives = 34/58 (57%), Gaps = 3/58 (5%)
Query: 192 LKECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQEAYRHI 249
L +CY+ LG F+++K Y LA+ YHPD+ + +KKA +F + EAYR +
Sbjct: 3 LGDCYRLLGLRSGASFADIKASYRRLAQQYHPDI-NPTDKKA--QDKFIALTEAYRFL 57
>ref|NP_502126.1| (NM_069725) DNAJ protein like [Caenorhabditis elegans]
sp|Q17433|DNJ2_CAEEL DnaJ homolog dnj-2 precursor
pir||T18654 hypothetical protein B0035.2 - Caenorhabditis elegans
emb|CAA97409.1| (Z73102) predicted using Genefinder~Similarity to Bacillus subtilis
DNAJ protein (SW:DNAJ_BACSU), contains similarity to
Pfam domain: PF00226 (DnaJ domain), Score=75.9,
E-value=2.6e-19, N=1~cDNA EST yk74h12.3 comes from this
gene~cDNA EST yk74h12.5 com>
Length = 337
Score = 42.4 bits (98), Expect = 0.005
Identities = 23/60 (38%), Positives = 33/60 (54%), Gaps = 1/60 (1%)
Query: 192 LKECYKTLGFIKHE-DFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQEAYRHIK 250
L+ CY L + E D ++ K Y LA+ +HPD KE+K L +RF +I AY +K
Sbjct: 34 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLK 93
>ref|NP_587824.1| (NC_003421) hypothetical protein [Schizosaccharomyces pombe]
pir||T41362 hypothetical protein SPCC4G3.14 - fission yeast
(Schizosaccharomyces pombe)
emb|CAB09769.1| (Z97052) hypothetical protein [Schizosaccharomyces pombe]
Length = 528
Score = 42.4 bits (98), Expect = 0.005
Identities = 35/128 (27%), Positives = 54/128 (41%), Gaps = 9/128 (7%)
Query: 121 HPIAKRFLRQKFSGCVFLETQDELHIRGDSERFWELIVTLNENRIVHN--ACLDFIYPNG 178
H +Q FS + ++ I +F + + N R A +F Y
Sbjct: 14 HSFTNSSAQQLFSKSIAHSSRRNFVISSSCTKFRNVAIQRNAKREFSRCAALKNFSY--- 70
Query: 179 FGKDSYTTMAERKLKECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKR 238
+ + T A ++ + YKTLG K SE+K Y +LAK YHPD K + +
Sbjct: 71 HARCFHATRAVWEMTDPYKTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQ----DK 126
Query: 239 FAIIQEAY 246
F I++AY
Sbjct: 127 FVEIKQAY 134
>gb|EAA04033.1| (AAAB01008807) agCP3837 [Anopheles gambiae str. PEST]
Length = 370
Score = 42.0 bits (97), Expect = 0.006
Identities = 26/71 (36%), Positives = 33/71 (45%), Gaps = 4/71 (5%)
Query: 176 PNGFGKDSYTTMAERKLKECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALY 235
P K T + K+ YK LG K+ E+KK Y +LA YHPD K K
Sbjct: 5 PLSNSKTKQTEAKPKMGKDFYKILGVSKNASDDEIKKAYRKLALKYHPD----KNKAPQA 60
Query: 236 AKRFAIIQEAY 246
+RF + EAY
Sbjct: 61 EERFKEVAEAY 71
>ref|NP_072862.1| (NC_000908) dnaJ-like protein [Mycoplasma genitalium]
sp|P47442|DNJM_MYCGE DnaJ-like protein MG200
pir||A64222 heat shock protein dnaJ homolog MG200 - Mycoplasma genitalium
gb|AAC71418.1| (U39699) dnaJ-like protein [Mycoplasma genitalium]
Length = 601
Score = 41.6 bits (96), Expect = 0.008
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 187 MAERKLKECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQEA 245
MAE+K ++ Y+ LG D SE+KK + +LAK YHPD + + AK FA I EA
Sbjct: 1 MAEQK-RDYYEVLGITPDADQSEIKKAFRKLAKKYHPDRNNAPDA----AKIFAEINEA 54
>gb|AAM43823.1|AF281816_4 (AF281816) DnaJ [Acholeplasma laidlawii]
Length = 369
Score = 41.6 bits (96), Expect = 0.008
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 193 KECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQEAY 246
++ Y LG K E+KK Y LAK YHPD+ KEK A +F +QEAY
Sbjct: 4 RDYYDVLGISKSASQDEIKKAYRSLAKKYHPDVS--KEKDA--ETKFKEVQEAY 53
>gb|EAA12149.1| (AAAB01008963) agCP9096 [Anopheles gambiae str. PEST]
Length = 364
Score = 41.6 bits (96), Expect = 0.008
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 195 CYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQEAYRHIK 250
CY+ LG + E+ K Y +LA+ YHPDL E+K + F I AY +K
Sbjct: 60 CYELLGVSRESTKQEIAKSYRQLARKYHPDLHHGPEQKQAAEESFKRIATAYEVLK 115
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,282,543
Number of Sequences: 1026957
Number of extensions: 6206010
Number of successful extensions: 19789
Number of sequences better than 1.0e-02: 19
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 19778
Number of HSP's gapped (non-prelim): 20
length of query: 253
length of database: 324,149,939
effective HSP length: 118
effective length of query: 135
effective length of database: 202,969,013
effective search space: 27400816755
effective search space used: 27400816755
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 96 (41.6 bits)