BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15645962|ref|NP_208141.1| hypothetical protein [Helicobacter pylori 26695] (387 letters) Database: /home/scwang/download_20020708_db/nr 1,026,957 sequences; 324,149,939 total letters Searching..................................................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208141.1|  (NC_000915) hypothetical protein [Helicoba...   765  0.0
ref|NP_223986.1|  (NC_000921) putative [Helicobacter pylori ...   719  0.0
ref|NP_281700.1|  (NC_002163) putative periplasmic protein [...   134  2e-30

>ref|NP_208141.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64688 hypothetical protein HP1349 - Helicobacter pylori (strain 26695)
 gb|AAD08406.1| (AE000636) H. pylori predicted coding region HP1349 [Helicobacter
           pylori 26695]
          Length = 387

 Score =  765 bits (1975), Expect = 0.0
 Identities = 387/387 (100%), Positives = 387/387 (100%)

Query: 1   MGFLFEKSLMSFFAHPIKILKIISLILSFLVSFLVAENAHEPEEIKAKVAYVKIPQLEDL 60
           MGFLFEKSLMSFFAHPIKILKIISLILSFLVSFLVAENAHEPEEIKAKVAYVKIPQLEDL
Sbjct: 1   MGFLFEKSLMSFFAHPIKILKIISLILSFLVSFLVAENAHEPEEIKAKVAYVKIPQLEDL 60

Query: 61  ENNPVYIGQIIGVTYDLLLFDAEFLEAKIKDGLDKTQIELLNKMPKWKKVEKELFRATYY 120
           ENNPVYIGQIIGVTYDLLLFDAEFLEAKIKDGLDKTQIELLNKMPKWKKVEKELFRATYY
Sbjct: 61  ENNPVYIGQIIGVTYDLLLFDAEFLEAKIKDGLDKTQIELLNKMPKWKKVEKELFRATYY 120

Query: 121 YKIKGIKAIIPSLEVSAFSNKDKYIDHSIAPKVTLQVTDLSKNPRYANVMAKDLQVLQYK 180
           YKIKGIKAIIPSLEVSAFSNKDKYIDHSIAPKVTLQVTDLSKNPRYANVMAKDLQVLQYK
Sbjct: 121 YKIKGIKAIIPSLEVSAFSNKDKYIDHSIAPKVTLQVTDLSKNPRYANVMAKDLQVLQYK 180

Query: 181 TKDYDDKNNILVMEIAFKEATWEDFHIKEAIKQGFDNASLNQIKAKEGSVFYYCVLPKTI 240
           TKDYDDKNNILVMEIAFKEATWEDFHIKEAIKQGFDNASLNQIKAKEGSVFYYCVLPKTI
Sbjct: 181 TKDYDDKNNILVMEIAFKEATWEDFHIKEAIKQGFDNASLNQIKAKEGSVFYYCVLPKTI 240

Query: 241 QNLSFDYFSLSNKQFKTLSFSTIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLVLF 300
           QNLSFDYFSLSNKQFKTLSFSTIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLVLF
Sbjct: 241 QNLSFDYFSLSNKQFKTLSFSTIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLVLF 300

Query: 301 FIFGRKLIFLGLGILCLGFVLYHLLFTQKSALLLAHKKIRILPTQNSTILGLSKNEMPIK 360
           FIFGRKLIFLGLGILCLGFVLYHLLFTQKSALLLAHKKIRILPTQNSTILGLSKNEMPIK
Sbjct: 301 FIFGRKLIFLGLGILCLGFVLYHLLFTQKSALLLAHKKIRILPTQNSTILGLSKNEMPIK 360

Query: 361 ILGSHDDYYKILTPHEQIGWVKKDEVK 387
           ILGSHDDYYKILTPHEQIGWVKKDEVK
Sbjct: 361 ILGSHDDYYKILTPHEQIGWVKKDEVK 387

>ref|NP_223986.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71827 hypothetical protein jhp1268 - Helicobacter pylori (strain J99)
 gb|AAD06853.1| (AE001550) putative [Helicobacter pylori J99]
          Length = 387

 Score =  719 bits (1856), Expect = 0.0
 Identities = 359/387 (92%), Positives = 372/387 (95%)

Query: 1   MGFLFEKSLMSFFAHPIKILKIISLILSFLVSFLVAENAHEPEEIKAKVAYVKIPQLEDL 60
           MGFLFEKSLM F AH IKI+K+  LILSFL +FLVAE+ HEPEEIKAKVAYVKIPQLEDL
Sbjct: 1   MGFLFEKSLMGFCAHSIKIIKVTGLILSFLAAFLVAEDTHEPEEIKAKVAYVKIPQLEDL 60

Query: 61  ENNPVYIGQIIGVTYDLLLFDAEFLEAKIKDGLDKTQIELLNKMPKWKKVEKELFRATYY 120
           EN PVYIGQ IGVTYDLLLFDAEFLEAKIKDG DKTQIELLNKMPKWKKVEKELFRATYY
Sbjct: 61  ENTPVYIGQTIGVTYDLLLFDAEFLEAKIKDGWDKTQIELLNKMPKWKKVEKELFRATYY 120

Query: 121 YKIKGIKAIIPSLEVSAFSNKDKYIDHSIAPKVTLQVTDLSKNPRYANVMAKDLQVLQYK 180
           YKIKGI+A IPSLEVSAFSNKDKYIDHSIAPKV LQVTDLSKNPRYANVMAKDLQV+QYK
Sbjct: 121 YKIKGIRASIPSLEVSAFSNKDKYIDHSIAPKVALQVTDLSKNPRYANVMAKDLQVVQYK 180

Query: 181 TKDYDDKNNILVMEIAFKEATWEDFHIKEAIKQGFDNASLNQIKAKEGSVFYYCVLPKTI 240
           TKDYDDKNNILVME+AFKEA WEDFH+KEAIKQGFDNASLNQIKAKEGSVFYYCVLPKT+
Sbjct: 181 TKDYDDKNNILVMELAFKEANWEDFHVKEAIKQGFDNASLNQIKAKEGSVFYYCVLPKTL 240

Query: 241 QNLSFDYFSLSNKQFKTLSFSTIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLVLF 300
           QNLSFDYFSLSN+QFKTLSFS IPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFL LF
Sbjct: 241 QNLSFDYFSLSNRQFKTLSFSAIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLALF 300

Query: 301 FIFGRKLIFLGLGILCLGFVLYHLLFTQKSALLLAHKKIRILPTQNSTILGLSKNEMPIK 360
           FIFGRKLIFLGLGILCLGFVLY+LLFTQKSALLLAHKKIRILPTQNSTILGLS++EMPIK
Sbjct: 301 FIFGRKLIFLGLGILCLGFVLYNLLFTQKSALLLAHKKIRILPTQNSTILGLSRDEMPIK 360

Query: 361 ILGSHDDYYKILTPHEQIGWVKKDEVK 387
           ILGSHDDYYKILTPHEQIGWVKKDEVK
Sbjct: 361 ILGSHDDYYKILTPHEQIGWVKKDEVK 387

>ref|NP_281700.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
 pir||D81397 probable periplasmic protein Cj0515 [imported] - Campylobacter
           jejuni (strain NCTC 11168)
 emb|CAB75152.1| (AL139075) putative periplasmic protein [Campylobacter jejuni]
          Length = 398

 Score =  134 bits (336), Expect = 2e-30
 Identities = 86/325 (26%), Positives = 164/325 (50%), Gaps = 12/325 (3%)

Query: 65  VYIGQIIGVTYDLLLFDAEFLEAKIKDGLDKTQIELLNKMPKWKKVEKELFRATYYYKIK 124
           VY+G++  +T  +     E ++      ++KT +  LN   KW+ +  E ++ T +++ K
Sbjct: 82  VYVGEVFPIT--IYARTTENIKFDFNISVEKTNLSFLNPDAKWEFINNE-YKTTLWFEAK 138

Query: 125 GIKAIIPSLEVSAFSNKDKYIDHSIAPKVTLQVTDLSKNPRYANVMAKDLQVLQYKTKDY 184
              A +  + +    N + + +  I     ++  +   N  +++++A  L++ + K   +
Sbjct: 139 NSNASLSKISIKLLRNNEAFQEADINLN-PIKFENTLFNKDFSHLVASSLEIKKVKASYF 197

Query: 185 DDKNNILVMEIAFKEATWEDFHIKEAIKQGFDNASLNQIKAKEGSVFYYCVLPKTIQNLS 244
           DD N I+++E+       + F I+   KQG +N   +       S FYY +LP +  N  
Sbjct: 198 DDANIIMMIELNATNTNLKSFFIEGIQKQGIENLKGD---FNASSAFYYAILPLSKTNFE 254

Query: 245 FDYFSLSNKQFKTLSFSTIPTQDTTGIQSDLIPKNNFL-VFSNVALLALCVFFLVLFFIF 303
           F YF+  +K+ + ++     + D    QSDL P N  L ++   AL  L V F VL F++
Sbjct: 255 FSYFNKDSKKLENINLKLKISDDEISTQSDLNPVNKDLNIYKQYALWFLAVLFGVL-FVW 313

Query: 304 GRKLIFLGLGILCLGFVLYHLLFTQ-KSALLLAHKKIRILPTQNSTILGLSKNEMPIKIL 362
            +  I L L ++C  F L  L+ T  ++A++ A  + +ILPT+ ST    +  +  +++L
Sbjct: 314 RKNYIILALAVVC--FALSFLVDTNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVL 371

Query: 363 GSHDDYYKILTPHEQIGWVKKDEVK 387
           G   +Y K+L    +IGWV KD+++
Sbjct: 372 GKRQNYIKVLFSDGKIGWVNKDDLQ 396

  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.323    0.141    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 235,583,375
Number of Sequences: 1026957
Number of extensions: 9787925
Number of successful extensions: 36093
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36087
Number of HSP's gapped (non-prelim): 3
length of query: 387
length of database: 324,149,939
effective HSP length: 123
effective length of query: 264
effective length of database: 197,834,228
effective search space: 52228236192
effective search space used: 52228236192
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 98 (42.4 bits)