BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645964|ref|NP_208143.1| hypothetical protein
[Helicobacter pylori 26695]
         (290 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208143.1|  (NC_000915) hypothetical protein [Helicoba...   587  e-167
ref|NP_223988.1|  (NC_000921) putative [Helicobacter pylori ...   543  e-154
ref|NP_282356.1|  (NC_002163) hypothetical protein Cj1209 [C...    43  0.005

>ref|NP_208143.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64688 hypothetical protein HP1351 - Helicobacter pylori (strain 26695)
 gb|AAD08407.1| (AE000636) H. pylori predicted coding region HP1351 [Helicobacter
           pylori 26695]
          Length = 290

 Score =  587 bits (1514), Expect = e-167
 Identities = 290/290 (100%), Positives = 290/290 (100%)

Query: 1   MDYQTFNEIFNRFVFGTSKAKLLENIAENPERYLGIFRPTKPKTKLLQNLLTSHEIKFGD 60
           MDYQTFNEIFNRFVFGTSKAKLLENIAENPERYLGIFRPTKPKTKLLQNLLTSHEIKFGD
Sbjct: 1   MDYQTFNEIFNRFVFGTSKAKLLENIAENPERYLGIFRPTKPKTKLLQNLLTSHEIKFGD 60

Query: 61  AFEYLIEQYLKEHNFSPLSKKIPYYNKNKEKRESLELDQLAKKDNTYYFIEQKMRDDHDS 120
           AFEYLIEQYLKEHNFSPLSKKIPYYNKNKEKRESLELDQLAKKDNTYYFIEQKMRDDHDS
Sbjct: 61  AFEYLIEQYLKEHNFSPLSKKIPYYNKNKEKRESLELDQLAKKDNTYYFIEQKMRDDHDS 120

Query: 121 AKKRGQIDNFERKLEALIHRYGENIQGYFYFIDESLNKNQNYYKEELQKLSVGYGVPLRL 180
           AKKRGQIDNFERKLEALIHRYGENIQGYFYFIDESLNKNQNYYKEELQKLSVGYGVPLRL
Sbjct: 121 AKKRGQIDNFERKLEALIHRYGENIQGYFYFIDESLNKNQNYYKEELQKLSVGYGVPLRL 180

Query: 181 CYGKELFENLNILQVWDEVLNHLARWREILPDLPSLNFDENPLESFREIKDLAPSVYRKL 240
           CYGKELFENLNILQVWDEVLNHLARWREILPDLPSLNFDENPLESFREIKDLAPSVYRKL
Sbjct: 181 CYGKELFENLNILQVWDEVLNHLARWREILPDLPSLNFDENPLESFREIKDLAPSVYRKL 240

Query: 241 LDNDEIFNLVLILFPEQKALKMLAEHFKRQNKTIYQQLASKLEEKLLSLR 290
           LDNDEIFNLVLILFPEQKALKMLAEHFKRQNKTIYQQLASKLEEKLLSLR
Sbjct: 241 LDNDEIFNLVLILFPEQKALKMLAEHFKRQNKTIYQQLASKLEEKLLSLR 290



>ref|NP_223988.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||E71827 hypothetical protein jhp1270 - Helicobacter pylori (strain J99)
 gb|AAD06855.1| (AE001550) putative [Helicobacter pylori J99]
          Length = 290

 Score =  543 bits (1400), Expect = e-154
 Identities = 269/290 (92%), Positives = 276/290 (94%)

Query: 1   MDYQTFNEIFNRFVFGTSKAKLLENIAENPERYLGIFRPTKPKTKLLQNLLTSHEIKFGD 60
           MDYQTFNEIFNRFVFGTSKAKLLENIAENPERYLGIFRPTKPKTKLLQNLLTSHEIKFGD
Sbjct: 1   MDYQTFNEIFNRFVFGTSKAKLLENIAENPERYLGIFRPTKPKTKLLQNLLTSHEIKFGD 60

Query: 61  AFEYLIEQYLKEHNFSPLSKKIPYYNKNKEKRESLELDQLAKKDNTYYFIEQKMRDDHDS 120
           AFE LIEQYLKEH+FSPLSKKIPYYNK+KEKRESLELDQ AKKDNTYYF+EQKMRDDHDS
Sbjct: 61  AFECLIEQYLKEHSFSPLSKKIPYYNKDKEKRESLELDQFAKKDNTYYFMEQKMRDDHDS 120

Query: 121 AKKRGQIDNFERKLEALIHRYGENIQGYFYFIDESLNKNQNYYKEELQKLSVGYGVPLRL 180
           AKKRGQIDNFERKLEALIHRYGENIQGYFYFIDE LNKNQNYYKEELQKLS  YGVPL L
Sbjct: 121 AKKRGQIDNFERKLEALIHRYGENIQGYFYFIDEGLNKNQNYYKEELQKLSADYGVPLSL 180

Query: 181 CYGKELFENLNILQVWDEVLNHLARWREILPDLPSLNFDENPLESFREIKDLAPSVYRKL 240
            YGK LFE+LNI QVWDEVL HLARWRE LPDLPSLNFDENPLESFREIKDLAPSVYRKL
Sbjct: 181 RYGKGLFESLNIPQVWDEVLTHLARWRETLPDLPSLNFDENPLESFREIKDLAPSVYRKL 240

Query: 241 LDNDEIFNLVLILFPEQKALKMLAEHFKRQNKTIYQQLASKLEEKLLSLR 290
           LDNDEIFNLVLILFPEQK LKML EHF++QNKTIYQQLASKL +KLLSLR
Sbjct: 241 LDNDEIFNLVLILFPEQKVLKMLVEHFRQQNKTIYQQLASKLVQKLLSLR 290



>ref|NP_282356.1| (NC_002163) hypothetical protein Cj1209 [Campylobacter jejuni]
 sp|Q9PN86|YC09_CAMJE Hypothetical protein Cj1209
 pir||C81327 hypothetical protein Cj1209 [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB73463.1| (AL139077) hypothetical protein Cj1209 [Campylobacter jejuni]
          Length = 517

 Score = 42.7 bits (99), Expect = 0.005
 Identities = 30/116 (25%), Positives = 53/116 (44%), Gaps = 7/116 (6%)

Query: 61  AFEYLIEQYLKEHNFSPLSKKIPYYNKNKEKRESLE------LDQLAKKDNTYYFIEQKM 114
           A EY  E  LK+   S L+ ++    K +EK    +       D L+KK+      E+K+
Sbjct: 43  AIEYEAELILKDAKNSILNAELEVKKKYEEKTHKFQKDFNQKFDDLSKKEQKLQQEEEKL 102

Query: 115 RDDHD-SAKKRGQIDNFERKLEALIHRYGENIQGYFYFIDESLNKNQNYYKEELQK 169
           ++D +   K +  I N +  ++ L ++Y E +      ++ S    QN  KE + K
Sbjct: 103 KEDKEYLCKSQKHIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILK 158



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.139    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,921,775
Number of Sequences: 1026957
Number of extensions: 8649531
Number of successful extensions: 25653
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25650
Number of HSP's gapped (non-prelim): 3
length of query: 290
length of database: 324,149,939
effective HSP length: 120
effective length of query: 170
effective length of database: 200,915,099
effective search space: 34155566830
effective search space used: 34155566830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 97 (42.0 bits)