BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646203|ref|NP_208145.1| hypothetical protein
[Helicobacter pylori 26695]
(315 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208145.1| (NC_000915) hypothetical protein [Helicoba... 658 0.0
ref|NP_223990.1| (NC_000921) putative [Helicobacter pylori ... 533 e-151
ref|NP_051524.1| (NC_000956) adenine specific DNA methyltra... 145 6e-34
gb|AAM49818.1| (AY098667) putative methylase [Borrelia herm... 131 1e-29
ref|NP_045464.1| (NC_001852) conserved hypothetical protein... 128 1e-28
ref|NP_223331.1| (NC_000921) putative [Helicobacter pylori ... 65 1e-09
gb|AAK71920.1|AF097471_1 (AF097471) endonuclease and methyl... 56 5e-07
ref|NP_207463.1| (NC_000915) hypothetical protein [Helicoba... 56 5e-07
gb|AAM02924.1|AF347071_1 (AF347071) restriction-modificatio... 45 8e-04
ref|NP_569175.1| (NC_003383) similar to putative helicase [... 45 0.001
>ref|NP_208145.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64689 hypothetical protein HP1353 - Helicobacter pylori (strain 26695)
Length = 315
Score = 658 bits (1697), Expect = 0.0
Identities = 315/315 (100%), Positives = 315/315 (100%)
Query: 1 MFRANTAPLIFTTLIIPVNQSLLSLIHEAKFLSTCYPPPPTNPKTPNQTRKNVALNTPRQ 60
MFRANTAPLIFTTLIIPVNQSLLSLIHEAKFLSTCYPPPPTNPKTPNQTRKNVALNTPRQ
Sbjct: 1 MFRANTAPLIFTTLIIPVNQSLLSLIHEAKFLSTCYPPPPTNPKTPNQTRKNVALNTPRQ 60
Query: 61 LKNNDKSWTQCFISSHINDQGLSSGGNGAGVNYPLYQFKHPNYTENFTPEFRSFIDKHYN 120
LKNNDKSWTQCFISSHINDQGLSSGGNGAGVNYPLYQFKHPNYTENFTPEFRSFIDKHYN
Sbjct: 61 LKNNDKSWTQCFISSHINDQGLSSGGNGAGVNYPLYQFKHPNYTENFTPEFRSFIDKHYN 120
Query: 121 HSFEPLEVLGYIYALLYSPNYRKRYEDFLKNDYPKILFTNNKDLFRALSLLGIELIGLHV 180
HSFEPLEVLGYIYALLYSPNYRKRYEDFLKNDYPKILFTNNKDLFRALSLLGIELIGLHV
Sbjct: 121 HSFEPLEVLGYIYALLYSPNYRKRYEDFLKNDYPKILFTNNKDLFRALSLLGIELIGLHV 180
Query: 181 LNQESLNYSFGKLKDATIGESCYKEEHNPIIKKPSHNEPDQRLYINHSAYFRGVSQEIYD 240
LNQESLNYSFGKLKDATIGESCYKEEHNPIIKKPSHNEPDQRLYINHSAYFRGVSQEIYD
Sbjct: 181 LNQESLNYSFGKLKDATIGESCYKEEHNPIIKKPSHNEPDQRLYINHSAYFRGVSQEIYD 240
Query: 241 YRIGGYGVLDKYLKSHKNEPCDFDHVTNIIKVIARTIEIQKTLGFLTSDLPHLKGNDSKA 300
YRIGGYGVLDKYLKSHKNEPCDFDHVTNIIKVIARTIEIQKTLGFLTSDLPHLKGNDSKA
Sbjct: 241 YRIGGYGVLDKYLKSHKNEPCDFDHVTNIIKVIARTIEIQKTLGFLTSDLPHLKGNDSKA 300
Query: 301 LMQEILQNPPPPPPI 315
LMQEILQNPPPPPPI
Sbjct: 301 LMQEILQNPPPPPPI 315
>ref|NP_223990.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71827 hypothetical protein jhp1271 - Helicobacter pylori (strain J99)
gb|AAD06844.1| (AE001550) putative [Helicobacter pylori J99]
Length = 1164
Score = 533 bits (1374), Expect = e-151
Identities = 258/293 (88%), Positives = 270/293 (92%), Gaps = 2/293 (0%)
Query: 23 LSLIHEAKFLSTCYPPPPTNPKTPNQTRKNVALNTPRQLKNNDKSWTQCFISSHINDQGL 82
L E F PPPPTNPKTPNQTRKNVALNTPRQLKNNDKSWTQCFISS +NDQGL
Sbjct: 778 LERARENTFKHMLPPPPPTNPKTPNQTRKNVALNTPRQLKNNDKSWTQCFISSQLNDQGL 837
Query: 83 SSGGNGAGVNYPLYQFKHPNYTENFTPEFRSFIDKHYNHSFEPLEVLGYIYALLYSPNYR 142
SSGGNGAGVNYPLYQFKHPNYTENFTPEFRSFIDKHY+H FEPLEVLGYIYALLYSP+YR
Sbjct: 838 SSGGNGAGVNYPLYQFKHPNYTENFTPEFRSFIDKHYSHHFEPLEVLGYIYALLYSPHYR 897
Query: 143 KRYEDFLKNDYPKILFTNNKDLFRALSLLGIELIGLHVLNQESLNYSFGKLKDATIGESC 202
KRYEDFLK DYPKILFTNNKDLFRALSLLGIELIGLHVLN+ESLN+SF KLKD TIGES
Sbjct: 898 KRYEDFLKADYPKILFTNNKDLFRALSLLGIELIGLHVLNRESLNHSFEKLKDPTIGESY 957
Query: 203 YKEEH--NPIIKKPSHNEPDQRLYINHSAYFRGVSQEIYDYRIGGYGVLDKYLKSHKNEP 260
YKE H NPIIKKPSH + +QRLYINHSAYFRGVS+EI+DY IGGYGVLDKYLKSHKNEP
Sbjct: 958 YKEAHDRNPIIKKPSHKKLEQRLYINHSAYFRGVSEEIHDYMIGGYGVLDKYLKSHKNEP 1017
Query: 261 CDFDHVTNIIKVIARTIEIQKTLGFLTSDLPHLKGNDSKALMQEILQNPPPPP 313
CDFDHV+NIIK+IARTIEIQKTLGFLTSDLPHLKGNDSKAL+QEILQNPPPPP
Sbjct: 1018 CDFDHVSNIIKIIARTIEIQKTLGFLTSDLPHLKGNDSKALIQEILQNPPPPP 1070
>ref|NP_051524.1| (NC_000956) adenine specific DNA methyltransferase [Borrelia
burgdorferi]
gb|AAF07736.1|AE001584_33 (AE001584) adenine specific DNA methyltransferase [Borrelia
burgdorferi]
Length = 1098
Score = 145 bits (366), Expect = 6e-34
Identities = 90/260 (34%), Positives = 140/260 (53%), Gaps = 33/260 (12%)
Query: 52 NVALNTPRQLKNNDKSWTQCFISSHINDQG-LSSGGNGAGVNYPLYQFKHPNYTENFTPE 110
N+ L T R L N S+ ++S I+D+ +S+ G+ + +PLY ++ +N E
Sbjct: 846 NIGLVTTRLLSTN--SFKHALVTSEISDKCFVSNKGSESCYLFPLYIKENQGVFKNIKKE 903
Query: 111 ------------FRSFIDKHYNHSFEPLEVLGYIYALLYSPNYRKRYEDFLKNDYPKILF 158
FR FI+ Y+ F P E+ GYIYA+LYS YR+++ +FLK DYPKI+F
Sbjct: 904 NFKKDEKDNKDIFREFINTKYSKIFTPEEIFGYIYAVLYSNTYREKFYEFLKIDYPKIIF 963
Query: 159 TNNKDLFRALSLLGIELIGLHVLNQE-SLNYSFGKLKDATIGESCYKEEHNPIIKKPSHN 217
NN D F LS LG +LI H+L LN S G + ++N I++K ++
Sbjct: 964 VNNVDAFLELSKLGTKLINSHLLKDNLKLNNSIGN----------HTGDYNRIVEKITYK 1013
Query: 218 EPDQRLYINHSAYFRGVSQEIYDYRIGGYGVLDKYLKSHKNEPC-------DFDHVTNII 270
E + LY N + F V++E+Y+Y+IG Y VL YLK K + + +H+ +I
Sbjct: 1014 EDTKELYYNSTCCFTNVAKEVYEYKIGSYQVLKSYLKYRKGKELIINENEDEIEHLEKVI 1073
Query: 271 KVIARTIEIQKTLGFLTSDL 290
KV++ TI +QK + + +L
Sbjct: 1074 KVLSYTINVQKEIDEIIQNL 1093
>gb|AAM49818.1| (AY098667) putative methylase [Borrelia hermsii]
Length = 1048
Score = 131 bits (329), Expect = 1e-29
Identities = 85/251 (33%), Positives = 132/251 (51%), Gaps = 22/251 (8%)
Query: 48 QTRKNVALNTPRQLKNNDKSWTQCFISSHINDQGLSSGGNGAGVNYPLYQFKHPNYT--- 104
+ N++ + R L ND + +S +I D+ SG +PLY +
Sbjct: 802 EIENNISFFSIRTLSLND--FHHALVSCNIMDKNFFSG---CSYVFPLYIKEDQGMLGSI 856
Query: 105 --ENFTPEFRSFIDKHYNHSFEPLEVLGYIYALLYSPNYRKRYEDFLKNDYPKILFTNNK 162
ENF F+ FI+ Y+ F+ E+LGYIYA+LYS YR ++ +FLK D+PKI+F ++
Sbjct: 857 IKENFKTTFKDFINFKYSKEFDAKEILGYIYAVLYSNIYRTKFIEFLKIDFPKIIFVDSV 916
Query: 163 DLFRALSLLGIELIGLHVLNQESLNYSFGKLKDATIGESCYKEEHNPIIKKPSHNEPDQR 222
+ F LS LGI+LI +H++ +S D+ IG + ++N II+K +N+ +
Sbjct: 917 ETFEKLSKLGIKLINVHLMKNDS-------ELDSNIG--IHIGDNNHIIEKIFYNKDTKE 967
Query: 223 LYINHSAYFRGVSQEIYDYRIGGYGVLDKYLKSHKNEPC---DFDHVTNIIKVIARTIEI 279
LY N F E+Y+Y IG Y VL YLK K D +++ +IK++ TI I
Sbjct: 968 LYYNSLCKFINTPYEVYEYFIGAYQVLRSYLKYRKGRELSIEDIEYLEKVIKILDYTINI 1027
Query: 280 QKTLGFLTSDL 290
QK + +T L
Sbjct: 1028 QKQIDLITCKL 1038
>ref|NP_045464.1| (NC_001852) conserved hypothetical protein [Borrelia burgdorferi]
pir||D70231 conserved hypothetical protein BBG02 - Lyme disease spirochete
plasmid G/lp28-2
gb|AAC66053.1| (AE000786) conserved hypothetical protein [Borrelia burgdorferi]
Length = 293
Score = 128 bits (321), Expect = 1e-28
Identities = 85/247 (34%), Positives = 131/247 (52%), Gaps = 27/247 (10%)
Query: 48 QTRKNVALNTPRQLKNNDKSWTQCFISSHINDQGLSSGGNGAGVNYPLYQFKHPNYT--- 104
+ + N+AL T R K + ++ F++S I++ + G +P+Y + + T
Sbjct: 60 EIQNNIALITTRLSKTD--RFSHAFVTSKISELSIIP----LGYVFPIY-IQEDSETPER 112
Query: 105 ---ENFTPEFRSFIDKHYNHSFEPLEVLGYIYALLYSPNYRKRYEDFLKNDYPKILFTNN 161
ENF +FR F+D YN F E+LGYIYA+LYS YR R+ + L+ D+PKI+F +N
Sbjct: 113 VKKENFKNKFRHFLDVKYNKKFTAEEILGYIYAILYSNIYRDRFYEHLQIDFPKIIFVDN 172
Query: 162 KDLFRALSLLGIELIGLHVLN-QESLNYSFGK---LKDATIGESCYKEEHNPIIKKPSHN 217
D+F L LG +LI H++ ++N + GK D T+ + N II+K +
Sbjct: 173 SDIFVTLGKLGTDLINSHLVKVVPTININIGKCFSFLDETL-------KQNSIIEKVFYK 225
Query: 218 EPDQRLYINHSAYFRGVSQEIYDYRIGGYGVLDKYLKSHKNEPC---DFDHVTNIIKVIA 274
E LY N ++ F VS+E+Y+Y IG + L YL K + +H+ +IK I
Sbjct: 226 EETNELYYNQTSRFINVSKEVYNYTIGSWQTLKSYLTYRKGREMPSKEVEHLEKVIKTIH 285
Query: 275 RTIEIQK 281
TI IQK
Sbjct: 286 YTIGIQK 292
>ref|NP_223331.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71909 hypothetical protein jhp0613 - Helicobacter pylori (strain J99)
gb|AAD06194.1| (AE001493) putative [Helicobacter pylori J99]
Length = 1167
Score = 64.7 bits (156), Expect = 1e-09
Identities = 54/217 (24%), Positives = 102/217 (46%), Gaps = 23/217 (10%)
Query: 46 PNQTRKNVALNTPRQLKNNDKSWTQCFISSHINDQGLSSGGNGAGVNYPLYQFKHPNYTE 105
P+++ +NV +NT N K ++ +S I+D L S YPLY +
Sbjct: 920 PDKSARNVVINTG---VGNGKDFS-ALVSDFISDFSLISPNQA----YPLYYYDDLGNRY 971
Query: 106 NFTPEFR-SFIDKHY-NHSFEPLEVLGYIYALLYSPNYRKRYEDFLKNDYPKILFTNNKD 163
N + + +HY +++ E+ YIYA+ + Y ++Y++ L + P+I + +
Sbjct: 972 NAISGYALNLFRRHYKDNAITEEEIFYYIYAIFHHKGYLEKYKNSLAKEAPRIALSED-- 1029
Query: 164 LFRALSLLGIELIGLHVLNQESLNYSFGKLKDA---TIGESCYKEEHNPIIKKPSHNEPD 220
F+ LS+LG EL LH LNY G++ + + ES E + +I+ + D
Sbjct: 1030 -FKELSMLGKELAELH------LNYESGEMHTSVKHNLLESAEMEGYYDVIQMKKDKKGD 1082
Query: 221 QRLYINHSAYFRGVSQEIYDYRIGGYGVLDKYLKSHK 257
R+ NH + ++ +DY + G +D ++ ++
Sbjct: 1083 -RIKYNHHITITQIPKKAFDYVVNGKSAIDWVIERYQ 1118
>gb|AAK71920.1|AF097471_1 (AF097471) endonuclease and methylase LlaGI [Lactococcus lactis]
Length = 1570
Score = 56.2 bits (134), Expect = 5e-07
Identities = 64/260 (24%), Positives = 109/260 (41%), Gaps = 39/260 (15%)
Query: 46 PNQTRKNVALNTPRQLKNNDKSWTQCFISSHINDQGLSSGGNGAGVNYPLYQFKHPNYTE 105
P++ KN+ +N Q DK+ IS +++D + G N P + ++
Sbjct: 1336 PDKNSKNLLINISGQ---GDKADFATLISEYLSDMHVIGG---QARNLPRFTYETDGMFA 1389
Query: 106 NFTPEFRSFIDKHYNHSFEPLEVLGYIYALLYSPNYRKRYEDFLKNDYPKILFTNNKDLF 165
T S D+ Y Y+Y +L+S YRKRY + LK D P+I NKD +
Sbjct: 1390 GRTDNIVSD-DEFY-----------YVYGVLHSSAYRKRYANDLKKDLPRIPLLKNKDKY 1437
Query: 166 RALSLLGIELIGLHVLNQESLNYSFGKLKDATIGESCYKEEHNPIIKKPSHNEPDQRLYI 225
+G +L LH LNY + D E + +K P D +Y
Sbjct: 1438 VE---IGRKLSDLH------LNYENQPIWDGIEVEISQPDYRVKKMKHPKKGVLDTIIY- 1487
Query: 226 NHSAYFRGVSQEIYDYRIGG----YGVLDKY-LKSHK-----NEPCDF-DHVTNIIKVIA 274
N S + + + Y+Y + G ++D+Y +K+ K ++P +F D+ I+ ++
Sbjct: 1488 NESITIKNIPERAYEYVVNGRPAIEWIIDQYQVKTDKKSGITDDPNEFSDNPKYILNLLL 1547
Query: 275 RTIEIQKTLGFLTSDLPHLK 294
I + L +LP +
Sbjct: 1548 SVITVSMRTLELIEELPEFE 1567
>ref|NP_207463.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64603 hypothetical protein HP0669 - Helicobacter pylori (strain 26695)
gb|AAD07737.1| (AE000580) H. pylori predicted coding region HP0669 [Helicobacter
pylori 26695]
Length = 933
Score = 56.2 bits (134), Expect = 5e-07
Identities = 55/246 (22%), Positives = 102/246 (41%), Gaps = 29/246 (11%)
Query: 46 PNQTRKNVALNTPRQLKNNDKSWTQCFISSHINDQGLSSGGNGAGVNYPLYQFKH-PNYT 104
P++ +NV +NT N K ++ +S I+D L S YPLY + N
Sbjct: 688 PDKDAQNVVINTG---VGNGKDFS-ALVSDFISDYSLISPNQA----YPLYYYDDLGNRH 739
Query: 105 ENFTPEFRSFIDKHYNHSF-EPLEVLGYIYALLYSPNYRKRYEDFLKNDYPKILFTNNKD 163
+ + +HY + E+ YIYA+ + Y ++Y++ L + P+I + +
Sbjct: 740 YAISGYCLNLFRRHYGDNLIAEEEIFYYIYAIFHHKGYLEKYKNSLAKEAPRIALSED-- 797
Query: 164 LFRALSLLGIELIGLHVLNQESLNYSFGKLKDATIGESCYKEEHNPIIKKPSHNEPDQRL 223
F+ LS+LG EL LH LNY G++ D + E + +
Sbjct: 798 -FKELSVLGKELAELH------LNYESGEMHDNIKYTTLMNAEIEGYYDVDKMTKKGDCI 850
Query: 224 YINHSAYFRGVSQEIYDYRIGGYGVLDKYLKSH----------KNEPCDFDHVTNIIKVI 273
N + + ++ +DY I G +D ++ + +N P D+ + +++
Sbjct: 851 IYNQNIAITKIPKKAFDYVINGKSAIDWVIERYQKTMDKESLIENNPNDYAGGKYVFELL 910
Query: 274 ARTIEI 279
R I +
Sbjct: 911 CRVITL 916
>gb|AAM02924.1|AF347071_1 (AF347071) restriction-modification system LlaBIII [Lactococcus
lactis]
Length = 1584
Score = 45.4 bits (106), Expect = 8e-04
Identities = 60/266 (22%), Positives = 113/266 (41%), Gaps = 35/266 (13%)
Query: 46 PNQTRKNVALNTPRQLKNNDKSWTQCFISSHINDQGLSSGGNGAGVNYPLYQFKHPNY-- 103
P+ T N+ ++ K K ++ + + D L +GG+ N P Y +++ +
Sbjct: 1329 PSSTSSNLMISLSN--KTGGKQFSTLIVDV-LPDVNLFTGGSQ---NLPKYLYRNNDTGN 1382
Query: 104 ----TENFTPEFRSFIDKHYNHSFEPLEVLGYIYALLYSPNYRKRYEDFLKNDYPKILFT 159
+E ++ ++K N S E + + Y+Y L +S Y K Y + L +PKI
Sbjct: 1383 LFDNSEKYSAIRHEVLNKLPNLSEE--DAMYYVYGLFHSIQYGKVYYEDLAKSFPKIPNV 1440
Query: 160 NNKDLFRALSLLGIELIGLHVLNQESLNYSFGKLKDATIGESCYKEEHNPIIKKPSHNEP 219
+K+ + +G EL LH LN E N + D I E Y+ + +K P
Sbjct: 1441 KHKEKY---IKIGKELADLH-LNYE--NQPICEGIDVQISELNYRVKK---MKHPKKGVL 1491
Query: 220 DQRLYINHSAYFRGVSQEIYDYRIGGYGVLDKYLKSHK----------NEPCDF-DHVTN 268
D +Y N S + + ++ YDY + G ++ + ++ ++P +F D
Sbjct: 1492 DTIIY-NGSIPIKNIPEKAYDYVVNGRPAIEWIINQYQVKTDKKSGITDDPNEFSDDPKY 1550
Query: 269 IIKVIARTIEIQKTLGFLTSDLPHLK 294
I+ ++ I + L +LP +
Sbjct: 1551 ILNLLLSVITVSMRTLELIDELPEFE 1576
>ref|NP_569175.1| (NC_003383) similar to putative helicase [Listeria innocua]
emb|CAC42019.1| (AL592102) similar to putative helicase [Listeria innocua]
Length = 1569
Score = 44.7 bits (104), Expect = 0.001
Identities = 56/232 (24%), Positives = 104/232 (44%), Gaps = 30/232 (12%)
Query: 79 DQGLSSGGNGAGVNYPLYQFKHPNYTENFTPE-----FRSFIDKHYNHSFEPLEVLGYIY 133
D+ + +GG+ N P Y +++ N F + R + K ++ E + + YIY
Sbjct: 1349 DRNIFAGGSQ---NLPKYLYQNNNNGGLFDSDEKYSAIRPEVLKRLSNLSEE-DAMYYIY 1404
Query: 134 ALLYSPNYRKRYEDFLKNDYPKILFTNNKDLFRALSLLGIELIGLHVLNQESLNYSFGKL 193
+ +S Y ++Y + L +PKI +K+ + +G EL LH LN E N +
Sbjct: 1405 GVFHSVQYGEKYYEDLAKSFPKIPNVKHKEKY---IKIGKELADLH-LNYE--NQPIWEG 1458
Query: 194 KDATIGESCYKEEHNPIIKKPSHNEPDQRLYINHSAYFRGVSQEIYDYRIGG----YGVL 249
D I E Y+ + +K P D +Y N S + + ++ Y+Y + G ++
Sbjct: 1459 IDVQISELDYRVKK---MKHPKKGVLDTIIY-NESITIKNIPEKAYEYVVNGRPAIEWII 1514
Query: 250 DKY-LKSHK-----NEPCDF-DHVTNIIKVIARTIEIQKTLGFLTSDLPHLK 294
D+Y +K+ K ++P +F D I+ ++ I + L +LP +
Sbjct: 1515 DQYQVKTDKKSGITDDPNEFSDDPKYILNLLLSVITVSMRTLELIDELPEFE 1566
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.139 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 240,473,627
Number of Sequences: 1026957
Number of extensions: 11420347
Number of successful extensions: 43232
Number of sequences better than 1.0e-02: 10
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 43217
Number of HSP's gapped (non-prelim): 10
length of query: 315
length of database: 324,149,939
effective HSP length: 121
effective length of query: 194
effective length of database: 199,888,142
effective search space: 38778299548
effective search space used: 38778299548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 97 (42.0 bits)