BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645970|ref|NP_208150.1| hypothetical protein
[Helicobacter pylori 26695]
(168 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208150.1| (NC_000915) hypothetical protein [Helicoba... 329 7e-90
ref|NP_223994.1| (NC_000921) putative [Helicobacter pylori ... 326 7e-89
ref|NP_212646.1| (NC_001318) B. burgdorferi predicted codin... 49 3e-05
ref|NP_228987.1| (NC_000853) chromosome segregation SMC pro... 44 7e-04
ref|NP_243294.1| (NC_002570) BH2428~unknown conserved prote... 43 0.001
dbj|BAB13427.1| (AB046821) KIAA1601 protein [Homo sapiens] 43 0.001
gb|AAG41949.1|AF304450_1 (AF304450) sarcolemmal associated ... 43 0.001
ref|NP_009090.1| (NM_007159) sarcolemma associated protein;... 43 0.001
ref|XP_030829.5| (XM_030829) similar to sarcolemma associat... 43 0.001
gb|AAB41233.1| (U83489) septin B [Aspergillus nidulans] 42 0.003
ref|NP_497935.1| (NM_065534) chromosome segregation protein... 42 0.004
pir||S30782 integrin homolog - yeast (Saccharomyces cerevis... 41 0.005
gb|AAB00143.1| (L03188) putative [Saccharomyces cerevisiae] 41 0.005
ref|XP_137488.1| (XM_137488) RIKEN cDNA A430106J12 [Mus mus... 41 0.005
ref|NP_010225.1| (NC_001136) involved intracellular protein... 41 0.006
sp|P25386|USO1_YEAST Intracellular protein transport protei... 41 0.006
emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevis... 41 0.006
emb|CAC01982.2| (AL390114) probable hypothetical 14.2 Kd pr... 41 0.006
emb|CAA58041.1| (X82834) 256 kD golgin [Homo sapiens] 40 0.008
ref|NP_002069.2| (NM_002078) golgi autoantigen, golgin subf... 40 0.008
ref|NP_013412.1| (NC_001144) Product of gene unknown; Imh1p... 40 0.008
pir||T32297 hypothetical protein M151.4 - Caenorhabditis el... 40 0.008
ref|NP_494598.1| (NM_062197) M151.4.p [Caenorhabditis elega... 40 0.008
gb|AAC51791.1| (U31906) golgin-245 [Homo sapiens] >gi|15873... 40 0.008
>ref|NP_208150.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64689 hypothetical protein HP1358 - Helicobacter pylori (strain 26695)
gb|AAD08408.1| (AE000636) H. pylori predicted coding region HP1358 [Helicobacter
pylori 26695]
Length = 168
Score = 329 bits (844), Expect = 7e-90
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MLSSSDLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKE 60
MLSSSDLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKE
Sbjct: 1 MLSSSDLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKE 60
Query: 61 LEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMG 120
LEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMG
Sbjct: 61 LEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMG 120
Query: 121 HYAASDEINEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILNMAGLKW 168
HYAASDEINEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILNMAGLKW
Sbjct: 121 HYAASDEINEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILNMAGLKW 168
>ref|NP_223994.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71828 hypothetical protein jhp1276 - Helicobacter pylori (strain J99)
gb|AAD06848.1| (AE001550) putative [Helicobacter pylori J99]
Length = 168
Score = 326 bits (835), Expect = 7e-89
Identities = 164/168 (97%), Positives = 168/168 (99%)
Query: 1 MLSSSDLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKE 60
MLSS+DLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENY+YSKRL+E
Sbjct: 1 MLSSNDLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENYLYSKRLRE 60
Query: 61 LEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMG 120
LEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMG
Sbjct: 61 LEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMG 120
Query: 121 HYAASDEINEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILNMAGLKW 168
HYAASDE+NEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILNMAGLKW
Sbjct: 121 HYAASDEVNEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILNMAGLKW 168
>ref|NP_212646.1| (NC_001318) B. burgdorferi predicted coding region BB0512 [Borrelia
burgdorferi]
pir||G70163 hypothetical protein BB0512 - Lyme disease spirochete
gb|AAC66876.1| (AE001153) B. burgdorferi predicted coding region BB0512 [Borrelia
burgdorferi]
Length = 2166
Score = 48.5 bits (114), Expect = 3e-05
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 37 MRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKED-----SSLKTTLSHLYNQL 91
+ +EK + +E+ LK++E + L L K E+ +LK L + N+L
Sbjct: 2014 INEVEKRFNNLSKESAKIQDNLKDMENVVSSLLLNKGLSEEVLINAQNLKEMLLDIENKL 2073
Query: 92 QE---IQKSMDKERDYLEEKIITLENKFKDMGHYAASD-----------EINEKQVLKMY 137
+ +++ + K LE I E + K +G +D E V+K+
Sbjct: 2074 KNTLTMRERVVKSETRLENLNIAAEERIKTLGILVKTDSKYQDNVGLNNETVRNSVIKLM 2133
Query: 138 QEGYSVDSISKEFKVSKGEVEFILNM 163
++G+S + IS+ K+S GEVE IL +
Sbjct: 2134 RQGWSAEEISRATKLSIGEVELILEL 2159
>ref|NP_228987.1| (NC_000853) chromosome segregation SMC protein, putative
[Thermotoga maritima]
pir||A72287 hypothetical protein TM1182 - Thermotoga maritima (strain MSB8)
gb|AAD36257.1|AE001774_14 (AE001774) chromosome segregation SMC protein, putative [Thermotoga
maritima]
Length = 1170
Score = 43.9 bits (102), Expect = 7e-04
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 19 LVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGL--SLEKSAKE 76
LV + G+ K + +K L LDE + Y KRL+E+E +G+ E+ AKE
Sbjct: 293 LVEMKGFYSSKLADSENKYVELSTRLDELEKRREEYKKRLEEMEYIFKGVMGDYERKAKE 352
Query: 77 DSSLKTTLSHLYNQLQEIQKSMDKERD---YLEEKIITLENKFKDMGHYAASDE----IN 129
+ +L ++ + +K + RD LE++I+ LEN+ +G E I
Sbjct: 353 LEKFEKEKENLLSRFNDKEKEFLRVRDEISKLEKQILKLENELLRIGETLEDLEKRRKIT 412
Query: 130 EKQVLKMYQEGYSVDSISKEFKVSKGEVE 158
E Q+L +E ++ EFK VE
Sbjct: 413 ENQILTRRRE---LEDKKNEFKEISRRVE 438
>ref|NP_243294.1| (NC_002570) BH2428~unknown conserved protein [Bacillus halodurans]
dbj|BAB06147.1| (AP001515) BH2428~unknown conserved protein [Bacillus halodurans]
Length = 166
Score = 43.1 bits (100), Expect = 0.001
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 15/165 (9%)
Query: 9 MVVLGAILLVLVCLVGYLYLKEKEFYHK--MRRLEKTLD----ESYQENYIYSKRLKELE 62
+++ G L ++ L+ L LKE E HK ++ +E L E +EN K LK+ E
Sbjct: 9 LILHGVTFLWIITLMQKLSLKETETDHKKTVKEIEDLLAAYTLEMKEEN---EKLLKQFE 65
Query: 63 GRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIIT--LENKFKDMG 120
+ + + K ++ S+L T + E + D +E+ + L+ +
Sbjct: 66 A-MRKVPVAKEPEDASTLATPAKPMSEPEPEAVRESDPAPPEEQEESVPPWLDGSNDEAV 124
Query: 121 HYAASDEINEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILNMAG 165
SD+ +V+ + ++G SV+ I+K+ + KGEVE +L G
Sbjct: 125 IVETSDQ---SRVISLAKQGLSVEEIAKKLNMGKGEVELLLKFYG 166
>dbj|BAB13427.1| (AB046821) KIAA1601 protein [Homo sapiens]
Length = 690
Score = 43.1 bits (100), Expect = 0.001
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 20 VCLVGYLYLKEKEFYHKMRR-LEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDS 78
V L L +EKE ++ ++ LE T D S I KELE ++ L E+ ++ +
Sbjct: 543 VLLSSELQRQEKELHNSQKQSLELTSDLS-----ILQMSRKELENQVGSLK-EQHLRDSA 596
Query: 79 SLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINE-KQVLKMY 137
LKT LS NQ +++QK +K + L E + L+ + + + +DE+ + K LK+
Sbjct: 597 DLKTLLSKAENQAKDVQKEYEKTQTVLSE--LKLKFEMTEQEKQSITDELKQCKNNLKLL 654
Query: 138 QE 139
+E
Sbjct: 655 RE 656
>gb|AAG41949.1|AF304450_1 (AF304450) sarcolemmal associated protein 1 [Homo sapiens]
Length = 359
Score = 43.1 bits (100), Expect = 0.001
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 20 VCLVGYLYLKEKEFYHKMRR-LEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDS 78
V L L +EKE ++ ++ LE T D S I KELE ++ L E+ ++ +
Sbjct: 215 VLLSSELQRQEKELHNSQKQSLELTSDLS-----ILQMSRKELENQVGSLK-EQHLRDSA 268
Query: 79 SLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINE-KQVLKMY 137
LKT LS NQ +++QK +K + L E + L+ + + + +DE+ + K LK+
Sbjct: 269 DLKTLLSKAENQAKDVQKEYEKTQTVLSE--LKLKFEMTEQEKQSITDELKQCKNNLKLL 326
Query: 138 QE 139
+E
Sbjct: 327 RE 328
>ref|NP_009090.1| (NM_007159) sarcolemma associated protein; Sarcolemmal-associated
protein [Homo sapiens]
gb|AAD43014.1| (AF100750) SLAP-2 homolog [Homo sapiens]
Length = 452
Score = 43.1 bits (100), Expect = 0.001
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 20 VCLVGYLYLKEKEFYHKMRR-LEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDS 78
V L L +EKE ++ ++ LE T D S I KELE ++ L E+ ++ +
Sbjct: 275 VLLSSELQRQEKELHNSQKQSLELTSDLS-----ILQMSRKELENQVGSLK-EQHLRDSA 328
Query: 79 SLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINE-KQVLKMY 137
LKT LS NQ +++QK +K + L E + L+ + + + +DE+ + K LK+
Sbjct: 329 DLKTLLSKAENQAKDVQKEYEKTQTVLSE--LKLKFEMTEQEKQSITDELKQCKNNLKLL 386
Query: 138 QE 139
+E
Sbjct: 387 RE 388
>ref|XP_030829.5| (XM_030829) similar to sarcolemma associated protein;
Sarcolemmal-associated protein [Homo sapiens]
Length = 679
Score = 43.1 bits (100), Expect = 0.001
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 20 VCLVGYLYLKEKEFYHKMRR-LEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDS 78
V L L +EKE ++ ++ LE T D S I KELE ++ L E+ ++ +
Sbjct: 532 VLLSSELQRQEKELHNSQKQSLELTSDLS-----ILQMSRKELENQVGSLK-EQHLRDSA 585
Query: 79 SLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINE-KQVLKMY 137
LKT LS NQ +++QK +K + L E + L+ + + + +DE+ + K LK+
Sbjct: 586 DLKTLLSKAENQAKDVQKEYEKTQTVLSE--LKLKFEMTEQEKQSITDELKQCKNNLKLL 643
Query: 138 QE 139
+E
Sbjct: 644 RE 645
>gb|AAB41233.1| (U83489) septin B [Aspergillus nidulans]
Length = 405
Score = 42.0 bits (97), Expect = 0.003
Identities = 19/66 (28%), Positives = 44/66 (65%)
Query: 49 QENYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEK 108
+E+ ++ ++L ++E ++ + +K A+++S LK + LY + +E+++ +D++R LEEK
Sbjct: 324 EEDALHEQKLAKMEAEMKMVFQQKVAEKESKLKQSEDELYARHREMKEQLDRQRAELEEK 383
Query: 109 IITLEN 114
LE+
Sbjct: 384 KARLES 389
>ref|NP_497935.1| (NM_065534) chromosome segregation protein [Caenorhabditis elegans]
pir||T21809 hypothetical protein F35G12.8 - Caenorhabditis elegans
emb|CAA86336.1| (Z46242) Similarity with the yeast chromosome segregation protein
SMC-1 (Swiss-Prot accession number P32908)~cDNA EST
yk4a3.3 comes from this gene~cDNA EST yk4a3.5 comes from
this gene~cDNA EST yk22e12.3 comes from this gene~cDNA
EST yk93c1.5 comes fro>
Length = 1549
Score = 41.6 bits (96), Expect = 0.004
Identities = 28/88 (31%), Positives = 44/88 (49%), Gaps = 7/88 (7%)
Query: 70 LEKSAKEDSSLKTTLS---HLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASD 126
L+K +E S+ TL + Y Q +E QK M +ER L++ +L + D+G ++
Sbjct: 347 LDKMKEEMKSIAETLDTNKNEYKQSEEAQKVMIEERSKLDKNFDSLSKELSDLG----TE 402
Query: 127 EINEKQVLKMYQEGYSVDSISKEFKVSK 154
E K+ LK +Q S KE +V K
Sbjct: 403 ETRRKEALKRHQANISKAEAEKEKEVKK 430
>pir||S30782 integrin homolog - yeast (Saccharomyces cerevisiae)
Length = 1726
Score = 41.2 bits (95), Expect = 0.005
Identities = 31/128 (24%), Positives = 67/128 (52%), Gaps = 4/128 (3%)
Query: 29 KEKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSL-KTTLSHL 87
KE+++ ++ +L + + QEN K+ ELEG ++ +++ +++E S+L K+ + L
Sbjct: 1101 KERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVK--AMKSTSEEQSNLKKSEIDAL 1158
Query: 88 YNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINEKQVLKMYQE-GYSVDSI 146
Q++E++K + L E I ++E++ + EK+V ++ + S D
Sbjct: 1159 NLQIKELKKKNETNEASLLESIKSIESETVKIKELQDECNFKEKEVSELEDKLKASEDKN 1218
Query: 147 SKEFKVSK 154
SK ++ K
Sbjct: 1219 SKYLELQK 1226
>gb|AAB00143.1| (L03188) putative [Saccharomyces cerevisiae]
Length = 1015
Score = 41.2 bits (95), Expect = 0.005
Identities = 31/128 (24%), Positives = 67/128 (52%), Gaps = 4/128 (3%)
Query: 29 KEKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSL-KTTLSHL 87
KE+++ ++ +L + + QEN K+ ELEG ++ +++ +++E S+L K+ + L
Sbjct: 390 KERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVK--AMKSTSEEQSNLKKSEIDAL 447
Query: 88 YNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINEKQVLKMYQE-GYSVDSI 146
Q++E++K + L E I ++E++ + EK+V ++ + S D
Sbjct: 448 NLQIKELKKKNETNEASLLESIKSIESETVKIKELQDECNFKEKEVSELEDKLKASEDKN 507
Query: 147 SKEFKVSK 154
SK ++ K
Sbjct: 508 SKYLELQK 515
>ref|XP_137488.1| (XM_137488) RIKEN cDNA A430106J12 [Mus musculus]
Length = 1579
Score = 41.2 bits (95), Expect = 0.005
Identities = 30/116 (25%), Positives = 54/116 (45%), Gaps = 2/116 (1%)
Query: 36 KMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQ 95
K+++LE L + EN K L+EL ++ LE+ KE+ SL+ S L ++++
Sbjct: 483 KIQQLESELQDLEMENQTLQKSLEEL--KISSKRLEQLEKENKSLEQETSQLEKDKKQLE 540
Query: 96 KSMDKERDYLEEKIITLENKFKDMGHYAASDEINEKQVLKMYQEGYSVDSISKEFK 151
K + R E K TLE +G+ ++ K++ + + + KE K
Sbjct: 541 KENKRLRQQAEIKDTTLEENNVKIGNLEKENKTLFKEINVYKESCVRLKELEKENK 596
>ref|NP_010225.1| (NC_001136) involved intracellular protein transport, coiled-coil
protein necessary for protein transport from ER to Golgi;
Uso1p [Saccharomyces cerevisiae]
pir||S67593 transport protein USO1 - yeast (Saccharomyces cerevisiae)
emb|CAA98621.1| (Z74106) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1790
Score = 40.8 bits (94), Expect = 0.006
Identities = 31/128 (24%), Positives = 67/128 (52%), Gaps = 4/128 (3%)
Query: 29 KEKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSL-KTTLSHL 87
KE+++ ++ +L + + QEN K+ ELEG ++ +++ +++E S+L K+ + L
Sbjct: 1171 KERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVK--AMKSTSEEQSNLKKSEIDAL 1228
Query: 88 YNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINEKQVLKMYQE-GYSVDSI 146
Q++E++K + L E I ++E++ + EK+V ++ + S D
Sbjct: 1229 NLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKN 1288
Query: 147 SKEFKVSK 154
SK ++ K
Sbjct: 1289 SKYLELQK 1296
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1
emb|CAA38253.1| (X54378) Uso1 protein [Saccharomyces cerevisiae]
Length = 1790
Score = 40.8 bits (94), Expect = 0.006
Identities = 31/128 (24%), Positives = 67/128 (52%), Gaps = 4/128 (3%)
Query: 29 KEKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSL-KTTLSHL 87
KE+++ ++ +L + + QEN K+ ELEG ++ +++ +++E S+L K+ + L
Sbjct: 1171 KERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVK--AMKSTSEEQSNLKKSEIDAL 1228
Query: 88 YNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINEKQVLKMYQE-GYSVDSI 146
Q++E++K + L E I ++E++ + EK+V ++ + S D
Sbjct: 1229 NLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKN 1288
Query: 147 SKEFKVSK 154
SK ++ K
Sbjct: 1289 SKYLELQK 1296
>emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1268
Score = 40.8 bits (94), Expect = 0.006
Identities = 31/128 (24%), Positives = 67/128 (52%), Gaps = 4/128 (3%)
Query: 29 KEKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSL-KTTLSHL 87
KE+++ ++ +L + + QEN K+ ELEG ++ +++ +++E S+L K+ + L
Sbjct: 649 KERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVK--AMKSTSEEQSNLKKSEIDAL 706
Query: 88 YNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINEKQVLKMYQE-GYSVDSI 146
Q++E++K + L E I ++E++ + EK+V ++ + S D
Sbjct: 707 NLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKN 766
Query: 147 SKEFKVSK 154
SK ++ K
Sbjct: 767 SKYLELQK 774
>emb|CAC01982.2| (AL390114) probable hypothetical 14.2 Kd protein [Leishmania major]
Length = 534
Score = 40.8 bits (94), Expect = 0.006
Identities = 29/124 (23%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 36 KMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQ 95
K+ LEKT+ + E + ++ + LE R + + LE++ + + K +++H + L ++
Sbjct: 236 KLIALEKTMRAEFDE-LVEARAARALEERFQSV-LERTRRLEEE-KASMTHDIHNLMQLT 292
Query: 96 KSMDKERDYLEEKIITLENKFKDMGHYA-ASDEINEKQVLKMYQEGYSVDSISKEFKVSK 154
+D ER + + K++ H+A A + EK LK+Y+ V ++ + +V +
Sbjct: 293 TDIDAERVQVRRHAAVQQQAHKELAHHALARRQQKEKADLKIYELEERVGELTAQQQVVR 352
Query: 155 GEVE 158
E++
Sbjct: 353 AELQ 356
>emb|CAA58041.1| (X82834) 256 kD golgin [Homo sapiens]
Length = 2185
Score = 40.4 bits (93), Expect = 0.008
Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Query: 26 LYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTLS 85
L LK KE Y K ++ +E Q+N KR L+G +E K K++S+L+T L
Sbjct: 1467 LELKSKEAYEKDEQINLLKEELDQQN----KRFDCLKGEMED-DKSKMEKKESNLETELK 1521
Query: 86 HLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINEKQVLKMYQEGYSVDS 145
++ E++ D++ +K I +E+ + + +Y +I K++++ Q +
Sbjct: 1522 SQTARIMELE-------DHITQKTIEIESLNEVLKNYNQQKDIEHKELVQKLQHFQELGE 1574
Query: 146 ISKEFKVSKGEVEFI 160
K+ +V + E + +
Sbjct: 1575 -EKDNRVKEAEEKIL 1588
>ref|NP_002069.2| (NM_002078) golgi autoantigen, golgin subfamily a, 4; golgin 245;
golgin-240; p230 [Homo sapiens]
sp|Q13439|GOG4_HUMAN Golgi autoantigen, golgin subfamily A 4 (Trans-Golgi p230) (256 kDa
golgin) (Golgin-245) (72.1 protein)
gb|AAC50434.1| (U41740) trans-Golgi p230 [Homo sapiens]
prf||2211333A peripheral membrane protein p230 [Homo sapiens]
Length = 2230
Score = 40.4 bits (93), Expect = 0.008
Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Query: 26 LYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTLS 85
L LK KE Y K ++ +E Q+N KR L+G +E K K++S+L+T L
Sbjct: 1467 LELKSKEAYEKDEQINLLKEELDQQN----KRFDCLKGEMED-DKSKMEKKESNLETELK 1521
Query: 86 HLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINEKQVLKMYQEGYSVDS 145
++ E++ D++ +K I +E+ + + +Y +I K++++ Q +
Sbjct: 1522 SQTARIMELE-------DHITQKTIEIESLNEVLKNYNQQKDIEHKELVQKLQHFQELGE 1574
Query: 146 ISKEFKVSKGEVEFI 160
K+ +V + E + +
Sbjct: 1575 -EKDNRVKEAEEKIL 1588
>ref|NP_013412.1| (NC_001144) Product of gene unknown; Imh1p [Saccharomyces
cerevisiae]
pir||S51441 hypothetical protein YLR309c - yeast (Saccharomyces cerevisiae)
gb|AAB67359.1| (U17247) Imh1p [Saccharomyces cerevisiae]
Length = 911
Score = 40.4 bits (93), Expect = 0.008
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 32 EFYHKMRRLEKTLDESYQENYIYSKRLKELEGRL------EGLSLEKSAKEDSSLKTTLS 85
E Y K++ + L E Y++ + ++ +++E L E LEKSAKE +L T L
Sbjct: 320 EEYDKLKENLQELQEKYKDCEDWKQKYEDIEAELKDAKELENSQLEKSAKELETLNTELI 379
Query: 86 HLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINE 130
L+E +++ RD L T+ N+ D A DEI E
Sbjct: 380 DTKKSLKEKNSELEEVRDMLR----TVGNELVD-----AKDEIKE 415
>pir||T32297 hypothetical protein M151.4 - Caenorhabditis elegans
Length = 1034
Score = 40.4 bits (93), Expect = 0.008
Identities = 35/127 (27%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 30 EKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTLSHLYN 89
E+E+ + MR L+K L ++ + +K +K EG +E L+KS + T +H +
Sbjct: 656 EEEYMNDMRDLKKALKDNQEGLEKIAKDVKNKEGEIE--ELKKSVSSEIVKATEAAHATD 713
Query: 90 QL-QEIQKSMDKERDYLEEKIITLENKFKDM-GHYAASDEINEK---QVLKMYQEGYSVD 144
QL +++QK D+ +E++ + + +D+ G AA I+E ++ K+ +E S+
Sbjct: 714 QLRKKLQKQQDEHEKRVEQE---HKKEIEDLKGALAAEKRISEADKVELKKLTEELQSMH 770
Query: 145 SISKEFK 151
+KE K
Sbjct: 771 LKNKELK 777
>ref|NP_494598.1| (NM_062197) M151.4.p [Caenorhabditis elegans]
gb|AAK77623.1|AF024502_4 (AF024502) Hypothetical protein M151.4 [Caenorhabditis elegans]
Length = 591
Score = 40.4 bits (93), Expect = 0.008
Identities = 35/127 (27%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 30 EKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTLSHLYN 89
E+E+ + MR L+K L ++ + +K +K EG +E L+KS + T +H +
Sbjct: 213 EEEYMNDMRDLKKALKDNQEGLEKIAKDVKNKEGEIE--ELKKSVSSEIVKATEAAHATD 270
Query: 90 QL-QEIQKSMDKERDYLEEKIITLENKFKDM-GHYAASDEINEK---QVLKMYQEGYSVD 144
QL +++QK D+ +E++ + + +D+ G AA I+E ++ K+ +E S+
Sbjct: 271 QLRKKLQKQQDEHEKRVEQE---HKKEIEDLKGALAAEKRISEADKVELKKLTEELQSMH 327
Query: 145 SISKEFK 151
+KE K
Sbjct: 328 LKNKELK 334
>gb|AAC51791.1| (U31906) golgin-245 [Homo sapiens]
prf||2206426A globin 245 [Homo sapiens]
Length = 2083
Score = 40.4 bits (93), Expect = 0.008
Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Query: 26 LYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTLS 85
L LK KE Y K ++ +E Q+N KR L+G +E K K++S+L+T L
Sbjct: 1322 LELKSKEAYEKDEQINLLKEELDQQN----KRFDCLKGEMED-DKSKMEKKESNLETELK 1376
Query: 86 HLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINEKQVLKMYQEGYSVDS 145
++ E++ D++ +K I +E+ + + +Y +I K++++ Q +
Sbjct: 1377 SQTARIMELE-------DHITQKTIEIESLNEVLKNYNQQKDIEHKELVQKLQHFQELGE 1429
Query: 146 ISKEFKVSKGEVEFI 160
K+ +V + E + +
Sbjct: 1430 -EKDNRVKEAEEKIL 1443
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.315 0.133 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,120,043
Number of Sequences: 1026957
Number of extensions: 3776344
Number of successful extensions: 21664
Number of sequences better than 1.0e-02: 24
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 21605
Number of HSP's gapped (non-prelim): 88
length of query: 168
length of database: 324,149,939
effective HSP length: 112
effective length of query: 56
effective length of database: 209,130,755
effective search space: 11711322280
effective search space used: 11711322280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 93 (40.4 bits)