BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645971|ref|NP_208151.1| hypothetical protein
[Helicobacter pylori 26695]
(183 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208151.1| (NC_000915) hypothetical protein [Helicoba... 366 e-101
ref|NP_223995.1| (NC_000921) putative [Helicobacter pylori ... 355 2e-97
ref|NP_281374.1| (NC_002163) hypothetical protein Cj0163c [... 42 0.003
>ref|NP_208151.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64689 hypothetical protein HP1359 - Helicobacter pylori (strain 26695)
gb|AAD08409.1| (AE000636) H. pylori predicted coding region HP1359 [Helicobacter
pylori 26695]
Length = 183
Score = 366 bits (939), Expect = e-101
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MAIWGWCFLFLSSLMWGLSMHELVLRSQALGFETRLVQCDLSFSYERFISKSKRSLAVLE 60
MAIWGWCFLFLSSLMWGLSMHELVLRSQALGFETRLVQCDLSFSYERFISKSKRSLAVLE
Sbjct: 1 MAIWGWCFLFLSSLMWGLSMHELVLRSQALGFETRLVQCDLSFSYERFISKSKRSLAVLE 60
Query: 61 EFDWLNSGFDFSRLNVENDTLELLKALYFKLEKLESLLLKENLLELEQKDRITALGHGLI 120
EFDWLNSGFDFSRLNVENDTLELLKALYFKLEKLESLLLKENLLELEQKDRITALGHGLI
Sbjct: 61 EFDWLNSGFDFSRLNVENDTLELLKALYFKLEKLESLLLKENLLELEQKDRITALGHGLI 120
Query: 121 CLKKSSLIAPQTYYGRCVLEGKILAFFGVARDKDFLEITRMHALDIKRYDSFIVHSERKG 180
CLKKSSLIAPQTYYGRCVLEGKILAFFGVARDKDFLEITRMHALDIKRYDSFIVHSERKG
Sbjct: 121 CLKKSSLIAPQTYYGRCVLEGKILAFFGVARDKDFLEITRMHALDIKRYDSFIVHSERKG 180
Query: 181 LKL 183
LKL
Sbjct: 181 LKL 183
>ref|NP_223995.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71828 hypothetical protein jhp1277 - Helicobacter pylori (strain J99)
gb|AAD06849.1| (AE001550) putative [Helicobacter pylori J99]
Length = 183
Score = 355 bits (910), Expect = 2e-97
Identities = 177/183 (96%), Positives = 179/183 (97%)
Query: 1 MAIWGWCFLFLSSLMWGLSMHELVLRSQALGFETRLVQCDLSFSYERFISKSKRSLAVLE 60
MAIWGWCFLFLSSLMWG SMHELVLRSQALGFETRLVQCDLSFSYERFISK+KRSLAVLE
Sbjct: 1 MAIWGWCFLFLSSLMWGSSMHELVLRSQALGFETRLVQCDLSFSYERFISKTKRSLAVLE 60
Query: 61 EFDWLNSGFDFSRLNVENDTLELLKALYFKLEKLESLLLKENLLELEQKDRITALGHGLI 120
EFDWLNSGFDFSRLNVENDTLELLKALYFKLEKLESLLLKENLLELEQKDRI ALGHGL+
Sbjct: 61 EFDWLNSGFDFSRLNVENDTLELLKALYFKLEKLESLLLKENLLELEQKDRIIALGHGLV 120
Query: 121 CLKKSSLIAPQTYYGRCVLEGKILAFFGVARDKDFLEITRMHALDIKRYDSFIVHSERKG 180
CLKK SLIAPQTYYGRCVLEGKILAFFGVARDKDFLEITRMHALDIKRYDSFIV SERKG
Sbjct: 121 CLKKQSLIAPQTYYGRCVLEGKILAFFGVARDKDFLEITRMHALDIKRYDSFIVDSERKG 180
Query: 181 LKL 183
LKL
Sbjct: 181 LKL 183
>ref|NP_281374.1| (NC_002163) hypothetical protein Cj0163c [Campylobacter jejuni]
pir||C81434 hypothetical protein Cj0163c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72647.1| (AL139074) hypothetical protein Cj0163c [Campylobacter jejuni]
Length = 165
Score = 42.0 bits (97), Expect = 0.003
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 3/153 (1%)
Query: 31 GFETRLVQCDLSFSYERFISKSKRSLAVLEEFDWLNSGFDFSRLNVENDTLELLKALYFK 90
GFE L C++ + RF+ + + A+ + W E +LL +L
Sbjct: 9 GFEAHLECCEIENN--RFLGEYLKLGAISQILKWKKLALRIDFDEGEKIIFDLLLSLKED 66
Query: 91 LEKLESLLLK-ENLLELEQKDRITALGHGLICLKKSSLIAPQTYYGRCVLEGKILAFFGV 149
+ +LE+ L K + L+ L+QK I +L + + L + YY R L + +A F
Sbjct: 67 ILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDTILEEDKEYYLRFDLNNQKIAIFIK 126
Query: 150 ARDKDFLEITRMHALDIKRYDSFIVHSERKGLK 182
A+ + +I ++ D +D+F+V +R ++
Sbjct: 127 AQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIR 159
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.326 0.141 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,861,319
Number of Sequences: 1026957
Number of extensions: 3781600
Number of successful extensions: 18146
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18144
Number of HSP's gapped (non-prelim): 3
length of query: 183
length of database: 324,149,939
effective HSP length: 114
effective length of query: 69
effective length of database: 207,076,841
effective search space: 14288302029
effective search space used: 14288302029
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 93 (40.4 bits)