BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644767|ref|NP_206937.1| hypothetical protein
[Helicobacter pylori 26695]
(211 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206937.1| (NC_000915) hypothetical protein [Helicoba... 408 e-113
ref|NP_222846.1| (NC_000921) putative [Helicobacter pylori ... 401 e-111
ref|NP_281286.1| (NC_002163) hypothetical protein Cj0073c [... 146 2e-34
ref|NP_274449.1| (NC_003112) conserved hypothetical protein... 79 3e-14
ref|NP_284365.1| (NC_003116) conserved hypothetical protein... 73 2e-12
ref|NP_657134.1| (NC_003995) DUF162, Uncharacterized ACR, Y... 71 9e-12
ref|NP_242700.1| (NC_002570) BH1834~unknown conserved prote... 63 2e-09
ref|NP_391283.1| (NC_000964) similar to hypothetical protei... 61 7e-09
gb|AAC28928.1| (U66823) unknown [Proteus mirabilis] 58 8e-08
ref|NP_286034.1| (NC_002655) ykgG gene product [Escherichia... 54 9e-07
sp|P77433|YKGG_ECOLI Hypothetical protein ykgG 54 1e-06
ref|NP_414842.1| (NC_000913) putative transporter [Escheric... 54 1e-06
ref|NP_246794.1| (NC_002663) unknown [Pasteurella multocida... 52 4e-06
ref|NP_655203.1| (NC_003995) DUF162, Uncharacterized ACR, Y... 52 6e-06
ref|NP_295632.1| (NC_001263) conserved hypothetical protein... 50 1e-05
ref|NP_519153.1| (NC_003295) PUTATIVE TRANSMEMBRANE PROTEIN... 47 1e-04
ref|NP_602366.1| (NC_003454) Iron-sulfur cluster-binding pr... 46 2e-04
ref|NP_147089.1| (NC_000854) hypothetical protein [Aeropyru... 45 5e-04
ref|NP_377627.1| (NC_003106) 383aa long conserved hypotheti... 43 0.003
ref|NP_344441.1| (NC_002754) Iron-sulfur protein, conserved... 42 0.006
ref|NP_069644.1| (NC_000917) hypothetical protein [Archaeog... 41 0.008
>ref|NP_206937.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64537 hypothetical protein HP0137 - Helicobacter pylori (strain 26695)
gb|AAD07211.1| (AE000535) H. pylori predicted coding region HP0137 [Helicobacter
pylori 26695]
Length = 211
Score = 408 bits (1048), Expect = e-113
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MSKELILKRIKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKENL 60
MSKELILKRIKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKENL
Sbjct: 1 MSKELILKRIKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKENL 60
Query: 61 EQAILKALENFKSKKILHSTDLNLNFEAFKDFTLQPYDKEIEAMREELFEIDTALLHGVC 120
EQAILKALENFKSKKILHSTDLNLNFEAFKDFTLQPYDKEIEAMREELFEIDTALLHGVC
Sbjct: 61 EQAILKALENFKSKKILHSTDLNLNFEAFKDFTLQPYDKEIEAMREELFEIDTALLHGVC 120
Query: 121 GISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEGMQALKNQSQNGALPTNM 180
GISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEGMQALKNQSQNGALPTNM
Sbjct: 121 GISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEGMQALKNQSQNGALPTNM 180
Query: 181 LLIGGPSRTADIELKTVFGVHGPQKVAIILY 211
LLIGGPSRTADIELKTVFGVHGPQKVAIILY
Sbjct: 181 LLIGGPSRTADIELKTVFGVHGPQKVAIILY 211
>ref|NP_222846.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71971 hypothetical protein jhp0125 - Helicobacter pylori (strain J99)
gb|AAD05702.1| (AE001451) putative [Helicobacter pylori J99]
Length = 211
Score = 401 bits (1031), Expect = e-111
Identities = 205/211 (97%), Positives = 210/211 (99%)
Query: 1 MSKELILKRIKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKENL 60
MSKELILKRIKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAE+IESAKENL
Sbjct: 1 MSKELILKRIKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAELIESAKENL 60
Query: 61 EQAILKALENFKSKKILHSTDLNLNFEAFKDFTLQPYDKEIEAMREELFEIDTALLHGVC 120
EQAILKALENF+SKK+LHSTDLNLNFEAFKDFTLQPYDKEIEAMREELFEIDTALLHGVC
Sbjct: 61 EQAILKALENFQSKKVLHSTDLNLNFEAFKDFTLQPYDKEIEAMREELFEIDTALLHGVC 120
Query: 121 GISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEGMQALKNQSQNGALPTNM 180
GISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEG+QALKNQ QNGALPTNM
Sbjct: 121 GISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEGVQALKNQGQNGALPTNM 180
Query: 181 LLIGGPSRTADIELKTVFGVHGPQKVAIILY 211
LLIGGPSRTADIELKTVFGVHGPQKVA+ILY
Sbjct: 181 LLIGGPSRTADIELKTVFGVHGPQKVAVILY 211
>ref|NP_281286.1| (NC_002163) hypothetical protein Cj0073c [Campylobacter jejuni]
pir||C81423 hypothetical protein Cj0073c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72559.1| (AL139074) hypothetical protein Cj0073c [Campylobacter jejuni]
Length = 218
Score = 146 bits (368), Expect = 2e-34
Identities = 89/213 (41%), Positives = 128/213 (59%), Gaps = 8/213 (3%)
Query: 2 SKELILKRIKEARAKHA---IQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKE 58
SK IL+ +K+A + I+ +P+ I+ +D++ E K NK V + K+
Sbjct: 11 SKANILEHLKKAYKETTFTRIESIDPVEH--IQTT-QDMLTEMKQKMSDNKYIVENATKD 67
Query: 59 NLEQAILKALENFKSKKILHSTDLNLNFEAFKDFTLQPYDKEIEAMREELFEIDTALLHG 118
LE+ I + + + K +++ DLNLN E K +DKEIE +R E+F D +++H
Sbjct: 68 TLEEKINEIVAKYSFKSMIYGADLNLNLEQIKAEKKICFDKEIENLRSEVFHSDFSIIHA 127
Query: 119 VCGISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEGMQALKNQSQNGALPT 178
G+SS G+ SS PR+LSL CI+LLKKE++V++LSE + +K +N LPT
Sbjct: 128 RAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLLKKENVVKSLSEALNLVK--KENEILPT 185
Query: 179 NMLLIGGPSRTADIELKTVFGVHGPQKVAIILY 211
N+L I GPSRTADIEL TVFGVHGPQ II+Y
Sbjct: 186 NILFIAGPSRTADIELITVFGVHGPQIAHIIIY 218
>ref|NP_274449.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||E81083 conserved hypothetical protein NMB1437 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41798.1| (AE002493) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 233
Score = 79.3 bits (194), Expect = 3e-14
Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 17/220 (7%)
Query: 2 SKELILKRIKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKA---EVIESAKE 58
++E IL ++K+A A + A Y + V + VE KH+ +A E+ K
Sbjct: 3 ARENILAKLKKADALPMEEPAVFDYYREMGVSWGSEVERLKHWAAAMRAVKTEIYWVTKS 62
Query: 59 NLEQAILKALENFKSKKIL---HSTDLNLNFEAFKDFTLQP--YDKEIEAMREELF-EID 112
N Q +A E K IL + + A D ++P +++EI+ + E F ID
Sbjct: 63 NWMQVFREAAEGKGLKNILLPLATEHGQIARAALADSNIEPIAFEREIDTWKTEFFTNID 122
Query: 113 TALLHGVCGISSLGMIGAVSSHASPRLLSLITLNCIILL---KKESIVRNLSEGMQALKN 169
CGI+ G + SS PR LSL+ L K + N EG + ++N
Sbjct: 123 AGFSGAQCGIARTGTLMLFSSPEEPRTLSLVPPVHFCLFDTSKMYNEFHNAVEGEKLVEN 182
Query: 170 QSQNGALPTNMLLIGGPSRTADIELKTVFGVHGPQKVAII 209
+PTN+ LI GPS+TADI+L +G HGP+ + I+
Sbjct: 183 -----GMPTNVFLISGPSKTADIQLTLAYGAHGPRDLVIL 217
>ref|NP_284365.1| (NC_003116) conserved hypothetical protein [Neisseria meningitidis
Z2491]
pir||E81859 conserved hypothetical protein NMA1649 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB84877.1| (AL162756) conserved hypothetical protein [Neisseria meningitidis
Z2491]
Length = 233
Score = 73.2 bits (178), Expect = 2e-12
Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 17/220 (7%)
Query: 2 SKELILKRIKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKA---EVIESAKE 58
++E IL ++K+A A + A Y V ++ E KH+ +A E+ K
Sbjct: 3 ARENILAKLKKADALPMEEPAVFDYYREKGVSWDSEAERLKHWAAAMRAVKTEIYWVTKS 62
Query: 59 NLEQAILKALENFKSKKIL---HSTDLNLNFEAFKDFTLQP--YDKEIEAMREELF-EID 112
N Q +A E K IL + + A ++P +++EI+ + E F I+
Sbjct: 63 NWMQVFREAAEGKGLKNILLPLATEHGQIARAALAGSNIEPIVFEREIDTWKTEFFTNIN 122
Query: 113 TALLHGVCGISSLGMIGAVSSHASPRLLSLITLNCIILL---KKESIVRNLSEGMQALKN 169
CGI+ G + SS PR LSL+ L K + N EG + ++N
Sbjct: 123 AGFSGAQCGIARTGTLMLFSSPEEPRTLSLVPPVHFCLFDTSKMYNEFHNAVEGEKLVEN 182
Query: 170 QSQNGALPTNMLLIGGPSRTADIELKTVFGVHGPQKVAII 209
+PTN+ LI GPS+TADI+L +G HGP+ + I+
Sbjct: 183 -----GMPTNVFLISGPSKTADIQLTLAYGAHGPRDLVIL 217
>ref|NP_657134.1| (NC_003995) DUF162, Uncharacterized ACR, YkgG family COG1556
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 230
Score = 70.9 bits (172), Expect = 9e-12
Identities = 51/199 (25%), Positives = 94/199 (46%), Gaps = 15/199 (7%)
Query: 23 NPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKENLEQAILKALENFKSKKILHSTDL 82
NP+ +++ + LVE++ EV + + A+ + F + ++ D
Sbjct: 33 NPLSHFSNEIDHKSLVEQFIANLHTLHTEVSHIHRSEIGSALQYVVHKFNIQSAVYWDDD 92
Query: 83 NL-----------NFEAFKDFTLQPYDKEIEAMREELFEIDTALLHGVCGISSLGMIGAV 131
L NF + + + + ++E+ R+ ++D + + G++ G +
Sbjct: 93 RLHQLEIGKHLIGNFVSHRMWQSKEGEREL---RDYAAQVDMGITYAEMGLAETGTVVLW 149
Query: 132 SSHASPRLLSLITLNCIILLKKESIVRNLSEGMQALKNQSQNGALPTNMLLIGGPSRTAD 191
+ RL+S++ +L + +I R L+EG+ + Q NG LP + I GPSRT D
Sbjct: 150 NGGGRGRLVSVLPAVYXAILSEHTIYRRLTEGVTRIHEQVSNG-LPACINFITGPSRTGD 208
Query: 192 IELKTVFGVHGPQKVAIIL 210
IE++ FGVHGP KV +IL
Sbjct: 209 IEMELAFGVHGPGKVHVIL 227
>ref|NP_242700.1| (NC_002570) BH1834~unknown conserved protein [Bacillus halodurans]
dbj|BAB05553.1| (AP001513) BH1834~unknown conserved protein [Bacillus halodurans]
Length = 230
Score = 62.8 bits (151), Expect = 2e-09
Identities = 56/226 (24%), Positives = 105/226 (45%), Gaps = 22/226 (9%)
Query: 3 KELILKRIKE--ARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLN---------KAE 51
+E L + E R + P Y +K +FE +++E+ Q++N +
Sbjct: 5 RETFLNNVAEKLGRGRRTAGVKRPDYT--VKPQFE-VMKEHSSDQLVNVLSEQCTKIHTD 61
Query: 52 VIESAKENLEQAILKALENFKSKKILHSTDLNLNFEAFKDFTLQPYDKEI------EAMR 105
V ++ + LEQAI LE + ++ ++ D + F LQ E+ E +
Sbjct: 62 VKQTKVDRLEQAIDNVLEEYSARNVITWNDPRFDQFGLTSF-LQREQVEVWDHTEGERLV 120
Query: 106 EELFEIDTALLHGVCGISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEGMQ 165
E+ + D + ++ G + +S + R +SL+ I ++ K ++V +S+ +
Sbjct: 121 EKAEQADIGITFADYTLAESGTVVLLSGNGKGRSVSLLPTYYIAIIPKSTLVPRMSQVTR 180
Query: 166 ALKNQSQNGA-LPTNMLLIGGPSRTADIELKTVFGVHGPQKVAIIL 210
L ++ +G LP+ + I GPS +ADIE+ V GVHGP + I+
Sbjct: 181 ELHLKAASGERLPSCINFISGPSNSADIEMNLVVGVHGPIRACYIV 226
>ref|NP_391283.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
pir||A70031 conserved hypothetical protein yvbY - Bacillus subtilis
emb|CAB15408.1| (Z99121) similar to hypothetical proteins [Bacillus subtilis]
Length = 240
Score = 61.2 bits (147), Expect = 7e-09
Identities = 49/199 (24%), Positives = 84/199 (41%), Gaps = 12/199 (6%)
Query: 24 PIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKENLEQAILKALENFKSKKILHSTDLN 83
P Y+ + +DLV K+ V E+IE+ L A+ + + F ++ D
Sbjct: 38 PQYKTLEGYSADDLVTVLKNHCVKIHTELIETDSTGLYDALREQVSRFSGGPVIIPKDPR 97
Query: 84 LNFEAFKDFTLQPYDKEIEAMRE-----------ELFEIDTALLHGVCGISSLGMIGAVS 132
K + + E + E + + + + ++ G + S
Sbjct: 98 FEEYGLKSLLTKDWPSEGTPVWEWDADKGEENIKKAEQANVGITFSEITLAESGTVVLFS 157
Query: 133 SHASPRLLSLITLNCIILLKKESIVRNLSEGMQALKNQSQNGA-LPTNMLLIGGPSRTAD 191
S R +SL+ I ++ K SIV +++ ++ NG +P+ + I GPS +AD
Sbjct: 158 SKDIGRSVSLLPTTYIAIVPKSSIVPRMTQASDIIRQNIANGVTVPSCINYITGPSNSAD 217
Query: 192 IELKTVFGVHGPQKVAIIL 210
IE+ V GVHGP K A IL
Sbjct: 218 IEMDLVVGVHGPVKAAYIL 236
>gb|AAC28928.1| (U66823) unknown [Proteus mirabilis]
Length = 119
Score = 57.8 bits (138), Expect = 8e-08
Identities = 34/91 (37%), Positives = 54/91 (58%), Gaps = 1/91 (1%)
Query: 121 GISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEGMQALKNQSQNGA-LPTN 179
G++ G I SS R +SL+ I++L+K I+ +++ + L +Q+G +P+
Sbjct: 25 GLTESGGIVLFSSPEKGRSVSLLPETSIVILRKSDILPRVAQLAERLHKMAQDGIRMPSC 84
Query: 180 MLLIGGPSRTADIELKTVFGVHGPQKVAIIL 210
+ LIGG S TADIEL V+GVHGP A ++
Sbjct: 85 INLIGGASSTADIELIKVWGVHGPVHAAYLI 115
>ref|NP_286034.1| (NC_002655) ykgG gene product [Escherichia coli O157:H7 EDL933]
ref|NP_308373.1| (NC_002695) putative transporter [Escherichia coli O157:H7]
gb|AAG54642.1|AE005208_10 (AE005208) ykgG gene product [Escherichia coli O157:H7 EDL933]
dbj|BAB33769.1| (AP002551) putative transporter [Escherichia coli O157:H7]
Length = 282
Score = 54.3 bits (129), Expect = 9e-07
Identities = 30/91 (32%), Positives = 54/91 (58%), Gaps = 1/91 (1%)
Query: 121 GISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEGMQALKNQSQNGA-LPTN 179
G++ G + S+ R LSL+ + + +L+K +++ +++ + L ++Q G +P+
Sbjct: 188 GLTESGGVVLFSAAERGRSLSLLPESSLFILRKSTLLPRVAQLAERLHQKAQAGERMPSC 247
Query: 180 MLLIGGPSRTADIELKTVFGVHGPQKVAIIL 210
+ +I GPS TADIEL V GVHGP K ++
Sbjct: 248 INIISGPSSTADIELIKVVGVHGPVKAVYLI 278
>sp|P77433|YKGG_ECOLI Hypothetical protein ykgG
Length = 231
Score = 53.9 bits (128), Expect = 1e-06
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 121 GISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEGMQALKNQSQNGA-LPTN 179
G++ G + S+ R LSL+ + +L+K +I+ +++ + L ++Q G +P+
Sbjct: 137 GLTESGGVVLFSAAERGRSLSLLPEYSLFILRKSTILPRVAQLAEKLHQKAQAGERMPSC 196
Query: 180 MLLIGGPSRTADIELKTVFGVHGPQKVAIIL 210
+ +I GPS TADIEL V GVHGP K ++
Sbjct: 197 INIISGPSSTADIELIKVVGVHGPVKAVYLI 227
>ref|NP_414842.1| (NC_000913) putative transporter [Escherichia coli K12]
pir||D64757 ykgG protein - Escherichia coli
gb|AAB18035.1| (U73857) hypothetical protein [Escherichia coli]
gb|AAC73411.1| (AE000137) putative transporter [Escherichia coli K12]
Length = 282
Score = 53.9 bits (128), Expect = 1e-06
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 121 GISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEGMQALKNQSQNGA-LPTN 179
G++ G + S+ R LSL+ + +L+K +I+ +++ + L ++Q G +P+
Sbjct: 188 GLTESGGVVLFSAAERGRSLSLLPEYSLFILRKSTILPRVAQLAEKLHQKAQAGERMPSC 247
Query: 180 MLLIGGPSRTADIELKTVFGVHGPQKVAIIL 210
+ +I GPS TADIEL V GVHGP K ++
Sbjct: 248 INIISGPSSTADIELIKVVGVHGPVKAVYLI 278
>ref|NP_246794.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03939.1| (AE006223) unknown [Pasteurella multocida]
Length = 240
Score = 52.0 bits (123), Expect = 4e-06
Identities = 32/91 (35%), Positives = 52/91 (56%), Gaps = 1/91 (1%)
Query: 121 GISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEGMQALKNQSQNGA-LPTN 179
G++ G I S R +SL+ I++L K +I+ +++ + L +++ G +P+
Sbjct: 140 GLTESGGIVLFSDAQRGRSVSLLPKVSIVVLNKSTILPRVAQLSEILHQKAKQGERMPSC 199
Query: 180 MLLIGGPSRTADIELKTVFGVHGPQKVAIIL 210
+ LI GPS TADIEL V GVHGP A ++
Sbjct: 200 INLIAGPSSTADIELIKVVGVHGPVAKAYLI 230
>ref|NP_655203.1| (NC_003995) DUF162, Uncharacterized ACR, YkgG family COG1556
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 236
Score = 51.6 bits (122), Expect = 6e-06
Identities = 53/228 (23%), Positives = 94/228 (40%), Gaps = 30/228 (13%)
Query: 6 ILKRIKEARAKHAIQGANPIYRNIIKVEF------EDLVEEYKHFQVLNKAEVIESAKEN 59
I K + R ++ P+++N + E E+L+E +K+ V+E+ +
Sbjct: 15 IAKELGRTRKTDGVE--RPVWKNNVNKETLKDYSQEELLEVFKNQCTNIHTTVVETTNDR 72
Query: 60 LEQAILKALENFKSKKILHSTDLNLNFEAFKDFTLQPYDKE------IEA------MREE 107
L + I K + I+ S D E F + L KE +E +EE
Sbjct: 73 LREDIQKVIVENGGGPIMLSAD-----ERFDSYGLTSLFKEELPKQNVEVNVWDPEKKEE 127
Query: 108 LFEIDTALLHGVC----GISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEG 163
I G+ ++ G I S R L + ++ +E++V +++
Sbjct: 128 NMRIAERANIGIAFSDYTLAESGTIVVQSHKGQGRSLHFLPTVYFAIIPRETLVPRITQA 187
Query: 164 MQALKNQSQNGALPTNML-LIGGPSRTADIELKTVFGVHGPQKVAIIL 210
+Q + + +NG + + I GPS +ADIE+ V GVHGP K +
Sbjct: 188 VQDMNTRVENGEEVASCINFITGPSNSADIEMNLVVGVHGPLKAVYFI 235
>ref|NP_295632.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||A75338 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF11463.1|AE002030_2 (AE002030) conserved hypothetical protein [Deinococcus radiodurans]
Length = 212
Score = 50.4 bits (119), Expect = 1e-05
Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 26/193 (13%)
Query: 24 PIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKENLEQAILKALENFKSKKI---LHST 80
P+ R I +FED + +Y A SA E L AI KAL N + + + +
Sbjct: 38 PLSRAEILHQFEDRILDY------GAAYTHVSAAE-LPGAIAKALGNARRVIVPAGIPAP 90
Query: 81 DLNLNFEAFKDFTLQPYDKEIEAMREELFEIDTALLHGVCGISSLGMIGAVSSHASP--- 137
L + + +D E EL D L IS G I + H +
Sbjct: 91 WLTVGMDVLRD--------EPPLSHAELDRADAVLTGCAVAISETGTI--ILDHRADQGR 140
Query: 138 RLLSLITLNCIILLKKESIVRNLSEGMQALKNQSQNGALPTNMLLIGGPSRTADIELKTV 197
R LSLI I +++++ IV+ + EG++A+ + G T + G S T+DIEL V
Sbjct: 141 RALSLIPDFHICVVREDQIVQTVREGVEAVAASVREGRPLT---WLSGGSATSDIELVRV 197
Query: 198 FGVHGPQKVAIIL 210
GVHGP+++ +I+
Sbjct: 198 EGVHGPRRLQVIV 210
>ref|NP_519153.1| (NC_003295) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
emb|CAD14734.1| (AL646062) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
Length = 243
Score = 47.4 bits (111), Expect = 1e-04
Identities = 28/91 (30%), Positives = 45/91 (48%), Gaps = 2/91 (2%)
Query: 120 CGISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEGMQALKNQSQNGALPTN 179
C I+ G + +S +L+ I ++ + IV +L ++ ++ G LP
Sbjct: 151 CAIAETGSLMLLSGPEQVASTALLPETHIAVVPQSRIVSDLEAAYALVR--AERGELPRA 208
Query: 180 MLLIGGPSRTADIELKTVFGVHGPQKVAIIL 210
+I GPSRT DIE V G HGP +V +I+
Sbjct: 209 TNVISGPSRTGDIEQTIVLGAHGPYRVHVIV 239
>ref|NP_602366.1| (NC_003454) Iron-sulfur cluster-binding protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL93665.1| (AE010463) Iron-sulfur cluster-binding protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 183
Score = 46.2 bits (108), Expect = 2e-04
Identities = 30/90 (33%), Positives = 46/90 (50%), Gaps = 3/90 (3%)
Query: 121 GISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSEGMQALKNQSQNGALPTNM 180
GI+ LG I A R+++ ++ I ++K +IV + L + +P +
Sbjct: 93 GIAELGTIVQEQDDADGRMVATMSEYYIGVVKGSTIVPTYDDMFDILSGMKK---IPNFV 149
Query: 181 LLIGGPSRTADIELKTVFGVHGPQKVAIIL 210
I GPSRTADIE GVHGP V+I++
Sbjct: 150 GFITGPSRTADIECVGTVGVHGPIDVSIVI 179
>ref|NP_147089.1| (NC_000854) hypothetical protein [Aeropyrum pernix]
pir||C72784 hypothetical protein APE0258 - Aeropyrum pernix (strain K1)
dbj|BAA79173.1| (AP000058) 313aa long hypothetical protein [Aeropyrum pernix]
Length = 313
Score = 45.1 bits (105), Expect = 5e-04
Identities = 31/111 (27%), Positives = 54/111 (47%), Gaps = 2/111 (1%)
Query: 102 EAMREELFEIDTALLHGVCGISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLS 161
E +RE+ F+ + + G I V + + RL+S + + L+ + IV ++
Sbjct: 190 EFLREKFFKARVGITGANSMSADTGTIVLVENEGNIRLVSSLPPVHVALVPIDKIVPSVW 249
Query: 162 EGMQALKNQSQNGA--LPTNMLLIGGPSRTADIELKTVFGVHGPQKVAIIL 210
+ + Q+ +P + LI GPS T DIE V G HGP++V ++L
Sbjct: 250 DAVNVALVQAAFAGFWMPVYISLITGPSATGDIEQIKVLGAHGPREVHVVL 300
>ref|NP_377627.1| (NC_003106) 383aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB66736.1| (AP000987) 383aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 383
Score = 42.7 bits (99), Expect = 0.003
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 102 EAMREELFEIDTALLHGVCGISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLS 161
E +R + + + + +G I V + + R+ +++ I ++ E IV L
Sbjct: 172 EFLRNKFLSANVGITGANAVAADVGSIVLVENEGNIRMSTVVPPVHIAIVGVEKIVPTLE 231
Query: 162 EGM-QALKNQSQNGALP-TNMLLIGGPSRTADIELKTVFGVHGPQKVAIIL 210
+ + +AL + G P T + + GPS T DIE+K V HGP++ +IL
Sbjct: 232 DALIEALVQAAYAGLYPPTYINVTSGPSSTGDIEMKRVSPAHGPKEFHLIL 282
>ref|NP_344441.1| (NC_002754) Iron-sulfur protein, conserved putative [Sulfolobus
solfataricus]
gb|AAK43231.1| (AE006903) Iron-sulfur protein, conserved putative [Sulfolobus
solfataricus]
Length = 384
Score = 41.6 bits (96), Expect = 0.006
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 102 EAMREELFEIDTALLHGVCGISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLS 161
E +R++ D + + G I V + + R+ S++ I + E I+ NL
Sbjct: 170 EFLRQKFLTADIGITGANAVAADAGSIVLVENEGNIRMSSVVPPVHISITGVEKILPNLE 229
Query: 162 EGMQALKNQSQNGAL--PTNMLLIGGPSRTADIELKTVFGVHGPQKVAIIL 210
+ Q+ L PT + + GPS T D+E K V HGP++ +IL
Sbjct: 230 YAIYEALVQAAYAGLYPPTYINVTSGPSSTGDVEQKRVSPAHGPKEFHLIL 280
>ref|NP_069644.1| (NC_000917) hypothetical protein [Archaeoglobus fulgidus]
pir||B69351 hypothetical protein AF0810 - Archaeoglobus fulgidus
gb|AAB90433.1| (AE001048) A. fulgidus predicted coding region AF0810
[Archaeoglobus fulgidus]
Length = 123
Score = 41.2 bits (95), Expect = 0.008
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 148 IILLKKESIVRNLSEGMQALKNQSQNGALPTNMLLIGGPSRTADIELKTVFGVHGPQKVA 207
+ +LK+E + N+ + + +S + S+TADIE KTVFG+HGP+K
Sbjct: 63 VAILKEEDVKENILLAYEHARRKSDV------LFASSSASKTADIEGKTVFGMHGPRKFT 116
Query: 208 IIL 210
++L
Sbjct: 117 VVL 119
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.136 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,491,484
Number of Sequences: 1026957
Number of extensions: 4237358
Number of successful extensions: 14696
Number of sequences better than 1.0e-02: 21
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 14676
Number of HSP's gapped (non-prelim): 21
length of query: 211
length of database: 324,149,939
effective HSP length: 116
effective length of query: 95
effective length of database: 205,022,927
effective search space: 19477178065
effective search space used: 19477178065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 95 (41.2 bits)