BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644768|ref|NP_206938.1| conserved hypothetical
iron-sulfur protein [Helicobacter pylori 26695]
(481 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206938.1| (NC_000915) conserved hypothetical iron-su... 972 0.0
ref|NP_222847.1| (NC_000921) putative [Helicobacter pylori ... 964 0.0
ref|NP_281287.1| (NC_002163) putative iron-sulfur protein [... 582 e-165
ref|NP_284366.1| (NC_003116) conserved hypothetical iron-su... 375 e-103
ref|NP_274450.1| (NC_003112) conserved hypothetical protein... 375 e-103
ref|NP_286033.1| (NC_002655) orf, hypothetical protein [Esc... 350 2e-95
ref|NP_414841.1| (NC_000913) orf, hypothetical protein [Esc... 350 2e-95
ref|NP_246793.1| (NC_002663) unknown [Pasteurella multocida... 348 8e-95
ref|NP_655202.1| (NC_003995) hypothetical protein predicted... 332 5e-90
ref|NP_391284.1| (NC_000964) similar to hypothetical protei... 327 1e-88
ref|NP_242699.1| (NC_002570) BH1833~unknown conserved prote... 322 8e-87
ref|NP_657135.1| (NC_003995) fer4, 4Fe-4S binding domain [B... 315 6e-85
ref|NP_625116.1| (NC_003888) putative iron-sulfur protein [... 311 1e-83
ref|NP_519733.1| (NC_003295) PUTATIVE IRON-SULFUR BINDING P... 294 2e-78
ref|NP_267890.1| (NC_002662) iron-binding oxidase subunit [... 285 8e-76
ref|NP_295631.1| (NC_001263) ferredoxin, putative [Deinococ... 265 7e-70
ref|NP_602367.1| (NC_003454) Iron-sulfur cluster-binding pr... 239 7e-62
gb|AAC18358.1| (AF064763) putative iron-binding protein [La... 233 5e-60
ref|NP_344441.1| (NC_002754) Iron-sulfur protein, conserved... 226 4e-58
ref|NP_377627.1| (NC_003106) 383aa long conserved hypotheti... 216 4e-55
ref|NP_559196.1| (NC_003364) conserved hypothetical protein... 212 9e-54
ref|NP_395861.1| (NC_002608) Vng6379c [Halobacterium sp. NR... 210 3e-53
emb|CAB07993.1| (Z94043) hypothetical protein [Bacillus sub... 210 3e-53
ref|NP_069645.1| (NC_000917) conserved hypothetical protein... 191 2e-47
ref|NP_275283.1| (NC_000916) conserved protein [Methanother... 190 3e-47
ref|NP_111111.1| (NC_002689) Uncharacterized conserved prot... 190 4e-47
ref|NP_394013.1| (NC_002578) conserved iron-sulfur protein ... 187 2e-46
ref|NP_147089.1| (NC_000854) hypothetical protein [Aeropyru... 155 8e-37
sp|P06130|FDHB_METFO FORMATE DEHYDROGENASE BETA CHAIN >gi|8... 49 1e-04
ref|NP_602366.1| (NC_003454) Iron-sulfur cluster-binding pr... 47 4e-04
ref|NP_147267.1| (NC_000854) hypothetical protein [Aeropyru... 47 5e-04
sp|Q50570|FDHB_METTF Formate dehydrogenase beta chain >gi|1... 46 9e-04
emb|CAA70997.1| (Y09870) heterodisulfide reductase [Methano... 45 0.001
ref|NP_207460.1| (NC_000915) anaerobic glycerol-3-phosphate... 44 0.003
ref|NP_246968.1| (NC_000909) formate dehydrogenase, beta su... 44 0.003
ref|NP_147088.1| (NC_000854) ferredoxin [Aeropyrum pernix] ... 44 0.003
ref|NP_561496.1| (NC_003366) probable iron-sulfur binding r... 44 0.003
ref|NP_613419.1| (NC_003551) Succinate dehydrogenase/fumara... 44 0.006
>ref|NP_206938.1| (NC_000915) conserved hypothetical iron-sulfur protein
[Helicobacter pylori 26695]
pir||B64537 probable iron-sulfur protein HP0138 [similarity] - Helicobacter
pylori (strain 26695)
gb|AAD07206.1| (AE000535) conserved hypothetical iron-sulfur protein [Helicobacter
pylori 26695]
Length = 481
Score = 972 bits (2512), Expect = 0.0
Identities = 481/481 (100%), Positives = 481/481 (100%)
Query: 1 MEKYHSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVK 60
MEKYHSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVK
Sbjct: 1 MEKYHSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVK 60
Query: 61 LKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEE 120
LKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEE
Sbjct: 61 LKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEE 120
Query: 121 IGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEE 180
IGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEE
Sbjct: 121 IGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEE 180
Query: 181 EPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC 240
EPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC
Sbjct: 181 EPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC 240
Query: 241 GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRS 300
GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRS
Sbjct: 241 GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRS 300
Query: 301 NILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHI 360
NILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHI
Sbjct: 301 NILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHI 360
Query: 361 PNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQHSGMEKFSMKMFAK 420
PNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQHSGMEKFSMKMFAK
Sbjct: 361 PNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQHSGMEKFSMKMFAK 420
Query: 421 MASDGAKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY 480
MASDGAKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY
Sbjct: 421 MASDGAKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY 480
Query: 481 E 481
E
Sbjct: 481 E 481
>ref|NP_222847.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71971 probable iron-sulfur protein jhp0126 [similarity] - Helicobacter
pylori (strain J99)
gb|AAD05703.1| (AE001451) putative [Helicobacter pylori J99]
Length = 481
Score = 964 bits (2491), Expect = 0.0
Identities = 476/481 (98%), Positives = 477/481 (98%)
Query: 1 MEKYHSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVK 60
MEKYHSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVK
Sbjct: 1 MEKYHSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVK 60
Query: 61 LKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEE 120
LKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEE
Sbjct: 61 LKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEE 120
Query: 121 IGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEE 180
IGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEE
Sbjct: 121 IGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEE 180
Query: 181 EPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC 240
EPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC
Sbjct: 181 EPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC 240
Query: 241 GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRS 300
GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRK DLDGPKE HIILLDNNRS
Sbjct: 241 GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKNDDLDGPKETHIILLDNNRS 300
Query: 301 NILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHI 360
NILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHI
Sbjct: 301 NILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHI 360
Query: 361 PNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQHSGMEKFSMKMFAK 420
PNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGV+KGAKSTQHSGMEKFSMKMFAK
Sbjct: 361 PNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVVKGAKSTQHSGMEKFSMKMFAK 420
Query: 421 MASDGAKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY 480
MASDG KWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY
Sbjct: 421 MASDGTKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY 480
Query: 481 E 481
E
Sbjct: 481 E 481
>ref|NP_281287.1| (NC_002163) putative iron-sulfur protein [Campylobacter jejuni]
pir||D81423 probable iron-sulfur protein Cj0074c [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB72560.1| (AL139074) putative iron-sulfur protein [Campylobacter jejuni]
Length = 479
Score = 582 bits (1499), Expect = e-165
Identities = 275/473 (58%), Positives = 362/473 (76%), Gaps = 1/473 (0%)
Query: 10 YEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILSRLDE 69
+E+I+ +L D Q++ENL +AM TL+ NR N++ R+ +W+ LR K+ K L L+E
Sbjct: 7 HEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFKDWQGLRAKAKQAKNNALMSLEE 66
Query: 70 YLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNHYLKE 129
L FEKNAT+NG K+H+A ++A EI+Y + KEKNI ++LK KSMASEEIGLNHYL++
Sbjct: 67 RLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEKNITKLLKGKSMASEEIGLNHYLEK 126
Query: 130 KGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYE-EEPEKLNAI 188
KG++A ETDLGELI+QL E P+HIVVPAIH+NR +IG+IF+EKL A E +EPE LNA+
Sbjct: 127 KGLKAIETDLGELILQLNEEPPLHIVVPAIHRNRHEIGEIFKEKLGANLENDEPESLNAV 186
Query: 189 ARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKLVES 248
AR+H+RK+FE K+G+SGVNFA++ EGA WL+ENEGNGRM TTA D+H+A+CGIEK++ES
Sbjct: 187 AREHLRKDFEGLKLGLSGVNFAMSREGAFWLIENEGNGRMCTTAPDIHIALCGIEKIMES 246
Query: 249 FDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILADEKY 308
F+DAA + +LL PSA G I Y NIITGPRK GDLDGPKE H+IL D+NRS +LA E Y
Sbjct: 247 FEDAATMVSLLTPSATGQFIPTYNNIITGPRKNGDLDGPKEVHVILFDHNRSKMLAHEDY 306
Query: 309 YRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCG 368
Y AL CIRCG C+N CPVYD+IGGHAY +TYPGPIG V+SP +FG+++ G I N CSLCG
Sbjct: 307 YEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVISPNIFGIDHTGDILNFCSLCG 366
Query: 369 RCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQHSGMEKFSMKMFAKMASDGAKW 428
RC+EVCPV+IPLA+LIR LR DK+G+G+ GA + H+ +E F+ K F +A++G KW
Sbjct: 367 RCSEVCPVQIPLADLIRKLRCDKIGQGKNPPLGANNVHHNALEAFAFKQFKNIATNGDKW 426
Query: 429 RFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIYE 481
RF L A +F+ + A ILP++K+W + + LP + L+ +VQ LEGV YE
Sbjct: 427 RFSLSKAHYFNWTVQNFASILPVIKKWYAFKELPQIKMDLYKEVQKLEGVSYE 479
>ref|NP_284366.1| (NC_003116) conserved hypothetical iron-sulphur protein [Neisseria
meningitidis Z2491]
pir||F81859 conserved hypothetical iron-sulfur protein NMA1650 [similarity] -
Neisseria meningitidis (group A strain Z2491)
emb|CAB84878.1| (AL162756) conserved hypothetical iron-sulphur protein [Neisseria
meningitidis Z2491]
Length = 484
Score = 375 bits (964), Expect = e-103
Identities = 188/387 (48%), Positives = 263/387 (67%), Gaps = 2/387 (0%)
Query: 3 KYHSDQE-YEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKL 61
K+H E +++ L D LR++LR+AMD L RK +L + E ++LR+L + V+
Sbjct: 7 KFHMKPETFKQNAAISLQDKPLRKSLRTAMDMLMTKRKAVLTDE-EELQSLRDLCEHVRQ 65
Query: 62 KILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEI 121
+ LS+L LE E+N T+ G K+H+A+ EA EII+++ KN K ++K KSM SEEI
Sbjct: 66 RSLSKLPALLEQLEENLTKLGVKVHWAETPAEACEIIHDIITAKNGKLMVKGKSMVSEEI 125
Query: 122 GLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEEE 181
LNHYL+ KGI+A E+DLGE I+Q+ E P HIV+PAIHK ++Q+ ++F + L ++
Sbjct: 126 ELNHYLEAKGIKAVESDLGEFIVQMAGEKPTHIVMPAIHKTKEQVSELFHQNLGTPLTDD 185
Query: 182 PEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICG 241
++L ARK +R + + +G+SGVNFA+A G + LVENEGNGR+STT VH+AI G
Sbjct: 186 VDQLTGFARKALRDIYSTADVGLSGVNFAVAETGTLCLVENEGNGRLSTTVPPVHIAITG 245
Query: 242 IEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSN 301
IEK+V D L +LL SA+G IT Y N+ITGPR+ +LDGP+E H++LLDN RS
Sbjct: 246 IEKVVAKLSDIPPLYSLLPRSAIGQNITTYFNMITGPRRSEELDGPQEMHLVLLDNGRSQ 305
Query: 302 ILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIP 361
A+++ R L CIRCG C+NHCPVY +IGG AY +TYPGPIG ++SP L GL+ +P
Sbjct: 306 AYAEDQMRRTLQCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLP 365
Query: 362 NLCSLCGRCTEVCPVEIPLAELIRDLR 388
C++CG C EVCPV IP+ E ++ LR
Sbjct: 366 TACTMCGACVEVCPVRIPITEQMQRLR 392
>ref|NP_274450.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||F81083 conserved hypothetical protein NMB1438 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41799.1| (AE002493) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 484
Score = 375 bits (962), Expect = e-103
Identities = 187/387 (48%), Positives = 263/387 (67%), Gaps = 2/387 (0%)
Query: 3 KYHSDQE-YEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKL 61
K+H E +++ L D LR++LR+AMD L RK +L + E ++LR+L + V+
Sbjct: 7 KFHMKPETFKQNAAISLQDKPLRKSLRTAMDMLMTKRKAVLTDE-EELQSLRDLCEHVRQ 65
Query: 62 KILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEI 121
+ LS+L LE E+N T+ G K+H+A+ EA +II+++ KN K ++K KSM SEEI
Sbjct: 66 RSLSKLPALLEQLEENLTKLGVKVHWAETPTEACQIIHDIITAKNGKLMVKGKSMVSEEI 125
Query: 122 GLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEEE 181
LNHYL+ KGI+A E+DLGE I+Q+ E P HIV+PAIHK ++Q+ ++F + L ++
Sbjct: 126 ELNHYLEAKGIKAVESDLGEFIVQMAGEKPTHIVMPAIHKTKEQVSELFHQNLGTPLTDD 185
Query: 182 PEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICG 241
++L ARK +R + + +G+SGVNFA+A G + LVENEGNGR+STT VH+AI G
Sbjct: 186 VDQLTGFARKALRDIYSTADVGLSGVNFAVAETGTLCLVENEGNGRLSTTVPPVHIAITG 245
Query: 242 IEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSN 301
IEK+V D L +LL SA+G IT Y N+ITGPR+ +LDGP+E H++LLDN RS
Sbjct: 246 IEKVVAKLSDIPPLYSLLPRSAIGQNITTYFNMITGPRRSEELDGPQEMHLVLLDNGRSQ 305
Query: 302 ILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIP 361
A+++ R L CIRCG C+NHCPVY +IGG AY +TYPGPIG ++SP L GL+ +P
Sbjct: 306 AYAEDQMRRTLQCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLP 365
Query: 362 NLCSLCGRCTEVCPVEIPLAELIRDLR 388
C++CG C EVCPV IP+ E ++ LR
Sbjct: 366 TACTMCGACVEVCPVRIPITEQMQRLR 392
>ref|NP_286033.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_308372.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG54641.1|AE005208_9 (AE005208) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB33768.1| (AP002551) hypothetical protein [Escherichia coli O157:H7]
Length = 475
Score = 350 bits (899), Expect = 2e-95
Identities = 187/465 (40%), Positives = 279/465 (59%), Gaps = 19/465 (4%)
Query: 6 SDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILS 65
S+ +++ I Q+ D +R+ + +A + ANR+ ++ + WE R+ +++ +LS
Sbjct: 6 SNTDFKTRIRQQIEDPIMRKAVANAQQRIGANRQKMV-DELGLWEEWRDRAAQIRDHVLS 64
Query: 66 RLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNH 125
LD YL + TQNG +++AK ++A I +A+ KN ++++K KSM +EEIG+NH
Sbjct: 65 NLDAYLYQLSEKVTQNGGHVYFAKTKEDATRYILQVAQRKNARKVVKSKSMVTEEIGVNH 124
Query: 126 YLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEPEKL 185
L++ GIQ ETDLGE I+QL + P H+VVPAIHK+R QI ++ E+L E PE +
Sbjct: 125 VLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHKDRHQIRRVLHERLGYEGPETPEAM 184
Query: 186 NAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKL 245
R+ +R++F S ++GI+G NFA+A G++ LV NEGN RM TT H+A+ G+E++
Sbjct: 185 TLFIRQKIREDFLSAEIGITGCNFAVAETGSVCLVTNEGNARMCTTLPKTHIAVMGMERI 244
Query: 246 VESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILAD 305
+F + +L +LA SAVG +T Y +TGPR+ G +DGP+E H++++DN RS +LA
Sbjct: 245 APTFAEVDVLITMLARSAVGARLTGYNTWLTGPREAGHVDGPEEFHLVIVDNGRSEVLAS 304
Query: 306 EKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCS 365
E + L CIRCG C+N CP Y IGGH Y S YPGPIG V+SP L G ++ +P CS
Sbjct: 305 E-FRDVLRCIRCGACMNTCPAYRHIGGHGYGSIYPGPIGAVISPLLGGYKDFKDLPYACS 363
Query: 366 LCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQHSGMEKFSMKMFAKMASDG 425
LC C VCPV IPL++LI LR +V +G+ A E+ ++KMFA S
Sbjct: 364 LCTACDNVCPVRIPLSKLI--LRHRRVMAEKGITAKA--------EQRAIKMFAYANSHP 413
Query: 426 AKWRFQL----KMAQFFSPLGKLLAPI-LPLVKEWASVRTLPNMD 465
W+ + A +F GK P+ + +W R LP D
Sbjct: 414 GLWKVGMMAGAHAASWFINGGK--TPLKFGAISDWMEARDLPEAD 456
>ref|NP_414841.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P77536|YKGF_ECOLI Putative electron transport protein ykgF
pir||C64757 probable iron-sulfur protein ykgF - Escherichia coli
gb|AAB18034.1| (U73857) hypothetical protein [Escherichia coli]
gb|AAC73410.1| (AE000137) orf, hypothetical protein [Escherichia coli K12]
Length = 475
Score = 350 bits (899), Expect = 2e-95
Identities = 186/465 (40%), Positives = 279/465 (60%), Gaps = 19/465 (4%)
Query: 6 SDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILS 65
S+ +++ I Q+ D +R+ + +A + ANR+ ++ + WE R+ +++ +LS
Sbjct: 6 SNTDFKTRIRQQIEDPIMRKAVANAQQRIGANRQKMV-DELGHWEEWRDRAAQIRDHVLS 64
Query: 66 RLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNH 125
LD YL + TQNG +++A+ ++A I +A+ KN ++++K KSM +EEIG+NH
Sbjct: 65 NLDAYLYQLSEKVTQNGGHVYFARTKEDATRYILQVAQRKNARKVVKSKSMVTEEIGVNH 124
Query: 126 YLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEPEKL 185
L++ GIQ ETDLGE I+QL + P H+VVPAIHK+R QI ++ E+L E PE +
Sbjct: 125 VLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHKDRHQIRRVLHERLGYEGPETPEAM 184
Query: 186 NAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKL 245
R+ +R++F S ++GI+G NFA+A G++ LV NEGN RM TT H+A+ G+E++
Sbjct: 185 TLFIRQKIREDFLSAEIGITGCNFAVAETGSVCLVTNEGNARMCTTLPKTHIAVMGMERI 244
Query: 246 VESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILAD 305
+F + +L +LA SAVG +T Y +TGPR+ G +DGP+E H++++DN RS +LA
Sbjct: 245 APTFAEVDVLITMLARSAVGARLTGYNTWLTGPREAGHVDGPEEFHLVIVDNGRSEVLAS 304
Query: 306 EKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCS 365
E + L CIRCG C+N CP Y IGGH Y S YPGPIG V+SP L G ++ +P CS
Sbjct: 305 E-FRDVLRCIRCGACMNTCPAYRHIGGHGYGSIYPGPIGAVISPLLGGYKDFKDLPYACS 363
Query: 366 LCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQHSGMEKFSMKMFAKMASDG 425
LC C VCPV IPL++LI LR +V +G+ A E+ ++KMFA S
Sbjct: 364 LCTACDNVCPVRIPLSKLI--LRHRRVMAEKGITAKA--------EQRAIKMFAYANSHP 413
Query: 426 AKWRFQL----KMAQFFSPLGKLLAPI-LPLVKEWASVRTLPNMD 465
W+ + A +F GK P+ + +W R LP D
Sbjct: 414 GLWKVGMMAGAHAASWFINGGK--TPLKFGAISDWMEARDLPEAD 456
>ref|NP_246793.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03938.1| (AE006223) unknown [Pasteurella multocida]
Length = 467
Score = 348 bits (893), Expect = 8e-95
Identities = 186/469 (39%), Positives = 279/469 (58%), Gaps = 27/469 (5%)
Query: 6 SDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILS 65
S +++ I +++ + +R+ + A + + ANR+ +++ WE RE KE++ ++
Sbjct: 6 SHLKFKPRINEEIQNDIMRKAVVMAQERIGANRQKMVEE-LGHWEEWREHAKEIRNHVIE 64
Query: 66 RLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNH 125
LD YL + QNG +++A ++A I N+AK+KN K+I+K KSM +EEIG+NH
Sbjct: 65 NLDAYLYQLSEKVIQNGGHVYFAATAEDATNYIKNVAKQKNAKKIVKSKSMVTEEIGMNH 124
Query: 126 YLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEPEKL 185
L+ +GI+ ETDLGE I+Q+ + P HIVVPAIHK+R QI K+ EKL + PE++
Sbjct: 125 VLEAEGIKVVETDLGEYILQVAEDKPSHIVVPAIHKDRHQIRKVLAEKLGYTGSDTPEEM 184
Query: 186 NAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKL 245
R+ +R +F +G+SG NFA+A G++ LV NEGN R++T+ H+A+ G+E+L
Sbjct: 185 TLFIRETIRNDFLEADIGVSGCNFAVAETGSVCLVTNEGNLRLATSLPKTHIAVMGMERL 244
Query: 246 VESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILAD 305
+F + +L LLA SAVG +T Y +TGPR G+ DGP+E H++++DN RS +L
Sbjct: 245 APTFKEVDVLITLLARSAVGARLTGYNTWLTGPRLAGETDGPEEFHLVIVDNGRSKMLGS 304
Query: 306 EKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCS 365
E + L CIRCG CLN CP Y +IGGH Y S YPGPIG V+SP L G + +P+ CS
Sbjct: 305 E-FREVLRCIRCGACLNTCPAYRQIGGHGYGSIYPGPIGSVISPILGGYEEFKDLPSACS 363
Query: 366 LCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQHSGM----EKFSMKMFAKM 421
LC C +VCPV+IPLA L+ +K + SGM E+ S+K F
Sbjct: 364 LCTACNQVCPVKIPLANLL--------------LKHRRHIAESGMNPLAERLSVKAFTLA 409
Query: 422 ASDGAKWRFQL----KMAQFFSPLGKLLAPI-LPLVKEWASVRTLPNMD 465
S + W+ + K+A+ GK+ PI + + EW R LP+ +
Sbjct: 410 NSHPSLWKIGMNVGAKVAKLAIRDGKM--PIQVGAIAEWTKARDLPDAE 456
>ref|NP_655202.1| (NC_003995) hypothetical protein predicted by GeneMark [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 473
Score = 332 bits (852), Expect = 5e-90
Identities = 179/461 (38%), Positives = 276/461 (59%), Gaps = 17/461 (3%)
Query: 6 SDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILS 65
S++++ + + D + D +R + SA L NR + WE RELG+E++ L
Sbjct: 6 SEKKFNDRVGDGIQDSFMRGAVSSAQTRLYTNRLKAA-DELGNWEEWRELGEEIRQHTLE 64
Query: 66 RLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNH 125
LD YL +N ++ G +++AK +EA + I ++AK+K K+++K KSM +EEI +NH
Sbjct: 65 NLDYYLMQLSENVSKRGGHVYFAKTKEEAAKYIQDVAKKKQAKKVVKSKSMVTEEISMNH 124
Query: 126 YLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEPEKL 185
L+E G + E+DLGE I+Q+ N+ P HI+ PA+HKNR QI +F+EKL ++P ++
Sbjct: 125 ALEEIGCEVLESDLGEYILQVDNDPPSHIIAPALHKNRTQIRDVFKEKLGYENSDDPYEM 184
Query: 186 NAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKL 245
RK +R++F ++G++G NFA+AN G++ LV NEGN + + +A+ G+E++
Sbjct: 185 TKFVRKQLREKFMDAEIGVTGCNFAVANTGSLCLVTNEGNADLVMSIPKTQIAVMGMERM 244
Query: 246 VESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILAD 305
V + ++ +L LL SAVG +T Y + GP +E ++DGP+E H++++DN RS IL
Sbjct: 245 VPTMEELDVLVGLLCRSAVGQKLTSYVT-VAGPIQEEEVDGPEEFHLVVVDNGRSQILGS 303
Query: 306 EKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCS 365
E + + L CIRC C+N CPVY +GGH+Y S Y GPIG V++P L G ++Y +P S
Sbjct: 304 E-FRQVLQCIRCAACVNVCPVYRHVGGHSYGSIYSGPIGAVLTPLLGGYDDYKELPYASS 362
Query: 366 LCGRCTEVCPVEIPLAELIRDLRSDKV-GEGRGVIKGAKSTQHSGMEKFSMKMFAKMASD 424
LCG CTE CPV+IPL +L+ R V EGR + EK +MKMF+ AS
Sbjct: 363 LCGACTEACPVKIPLHDLLLKHRQVIVEQEGRAPL----------AEKLAMKMFSMGASS 412
Query: 425 GAKWRFQLKMA-QFFSPL--GKLLAPILPLVKEWASVRTLP 462
A ++ KMA SP G ++ + +K W +R P
Sbjct: 413 AALYKMGSKMAPAAMSPFTSGNRVSKGVGPLKNWTDIREFP 453
>ref|NP_391284.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
pir||F70039 probable iron-sulfur protein yvfW [similarity] - Bacillus subtilis
emb|CAB15409.1| (Z99121) similar to hypothetical proteins [Bacillus subtilis]
Length = 479
Score = 327 bits (839), Expect = 1e-88
Identities = 184/460 (40%), Positives = 276/460 (60%), Gaps = 21/460 (4%)
Query: 10 YEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILSRLDE 69
++E ++ + + +R + A + LR R + WE R L +E++ +L LD
Sbjct: 10 FKERVSQGIDNEFMRGAVSGAQERLRTRRLEAAEE-LGNWEEWRSLSEEIRQHVLENLDF 68
Query: 70 YLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNHYLKE 129
YL +N + G +++AK +EA+ I ++ ++KN K+I+K KSM +EEI LN L++
Sbjct: 69 YLGQLAENVAKRGGHVYFAKTAEEASSYIRDVIQKKNGKKIVKSKSMVTEEINLNEVLEK 128
Query: 130 KGIQAQETDLGELIIQLINEH--PVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEPEKLNA 187
+G + ETDLGE I+Q I++H P HIV PA+HKN++QI +F+E+L+ + E+PE+L
Sbjct: 129 EGCEVVETDLGEYILQ-IDDHDPPSHIVAPALHKNKEQIRDVFKERLDYQHTEKPEELVM 187
Query: 188 IARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKLVE 247
AR +RK+F +GI+G NFAIA+ G++ LV NEGNGR+ +T + + G+E++V
Sbjct: 188 HARAILRKKFLEADIGITGCNFAIADTGSVSLVTNEGNGRLVSTLPKTQITVMGMERIVP 247
Query: 248 SFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILADEK 307
SF + +L ++L SAVG +T Y +TGP+ EG++DGP+E H++++DN RSNIL E
Sbjct: 248 SFSEFEVLVSMLTRSAVGQRLTSYITALTGPKLEGEVDGPEEFHLVIVDNGRSNILGTE- 306
Query: 308 YYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLC 367
+ L CIRC C+N CPVY +GGH+Y S Y GPIG V+SP L G ++Y +P SLC
Sbjct: 307 FQSVLQCIRCAACINVCPVYRHVGGHSYGSIYSGPIGAVLSPLLGGYDDYKELPYASSLC 366
Query: 368 GRCTEVCPVEIPLAELIRDLRSDKV-GEGRGVIKGAKSTQHSGMEKFSMKMFAKMASDGA 426
C+E CPV+IPL EL+ R + V EGR I EK +MK F AS +
Sbjct: 367 AACSEACPVKIPLHELLLKHRQNIVEKEGRAPIS----------EKLAMKAFGLGASSLS 416
Query: 427 KWRFQLKMAQF----FSPLGKLLAPILPLVKEWASVRTLP 462
++ K A F+ K+ PL K W +R P
Sbjct: 417 LYKMGSKWAPAAMTPFTEDEKISKGPGPL-KNWTQIRDFP 455
>ref|NP_242699.1| (NC_002570) BH1833~unknown conserved protein [Bacillus halodurans]
dbj|BAB05552.1| (AP001513) BH1833~unknown conserved protein [Bacillus halodurans]
Length = 485
Score = 322 bits (824), Expect = 8e-87
Identities = 178/459 (38%), Positives = 276/459 (59%), Gaps = 19/459 (4%)
Query: 10 YEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILSRLDE 69
++E + + ++ +R+ + SA + L+ K + +W+ R L +E++ L LD
Sbjct: 10 FDERVEKGIDNLFMRQAVSSAQERLKL-AKAKAEEELGDWQEWRTLAEEIRSHTLDNLDY 68
Query: 70 YLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNHYLKE 129
YLE N ++NG +++A+ +EAN I +A ++ K+I+K KSM +EEIG+N L+
Sbjct: 69 YLEQLSDNVSKNGGYVYFAQTAEEANVYIKEIAMKQQAKKIIKSKSMVTEEIGMNQALES 128
Query: 130 KGIQAQETDLGELIIQLINEH--PVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEPEKLNA 187
G + E+DLGE I+Q I++H P HIV PA+HKN++QI + F+EK + P++L
Sbjct: 129 IGCEVIESDLGEYILQ-IDDHDPPSHIVAPALHKNKEQIRETFKEKKGYSKSANPQELTL 187
Query: 188 IARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKLVE 247
AR+ +RKEF +GI+G NFA+A G+I LV NEGN R++TT + + G+E++V
Sbjct: 188 FAREQLRKEFLQADIGITGCNFAVAESGSITLVTNEGNARLATTIPKTQITVMGMERIVP 247
Query: 248 SFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILADEK 307
++++ IL ++L SAVG +T Y +T ++ GD+DGP+E H++++DN RSNIL E
Sbjct: 248 TWEELDILVSMLCRSAVGQKLTSYVTGLTSTKEAGDVDGPEEFHLVIVDNGRSNILGTE- 306
Query: 308 YYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLC 367
+ AL CIRC C+N CP+Y +GGH+Y S YPGPIG V++P L G +++ +P SLC
Sbjct: 307 FQAALHCIRCAACINVCPIYRHVGGHSYGSIYPGPIGAVLTPLLEGYDDHEELPYASSLC 366
Query: 368 GRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQHSGMEKFSMKMFAKMASDGAK 427
CT+ CPV+IPL EL+ + R + + K T S E +MK F +AS
Sbjct: 367 AACTDACPVKIPLHELL-------IKHRRVIAEQEKRTPLS--ESLAMKGFGLVASQPNL 417
Query: 428 WRFQLKMAQF-FSPL---GKLLAPILPLVKEWASVRTLP 462
++ K A + SPL G + PL K W +R LP
Sbjct: 418 FKMGTKGAPYVLSPLTKDGSIKKGPGPL-KGWTDIRDLP 455
>ref|NP_657135.1| (NC_003995) fer4, 4Fe-4S binding domain [Bacillus anthracis A2012]
[Bacillus anthracis str. A2012]
Length = 470
Score = 315 bits (808), Expect = 6e-85
Identities = 177/449 (39%), Positives = 251/449 (55%), Gaps = 17/449 (3%)
Query: 18 LGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILSRLDEYLELFEKN 77
L D Q+R + D LR R+ + E RE E+++ + LD YLE N
Sbjct: 17 LHDPQMRSAVPFTQDRLRMGREQAT-HELGNMEEWREAASEIRMHTIENLDSYLEQLATN 75
Query: 78 ATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNHYLKEKGIQAQET 137
+NG +H+A ++A + + ++K + ++K KSM SEEI LN L+E G++ E
Sbjct: 76 VRKNGGHVHFAFKAEDAVSYVSEIVRKKGARSVIKSKSMVSEEIHLNKNLEEMGVKVVEY 135
Query: 138 DLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEPEKLNAIARKHMRKEF 197
DLGE IIQL E P H++ PAIHK ++Q+ ++F ++ + +L AR+ +RKEF
Sbjct: 136 DLGEYIIQLAGETPSHLIAPAIHKTKEQVAELFSKEAGRKIPVDTNQLLQFAREKLRKEF 195
Query: 198 ESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKLVESFDDAAILNN 257
+GISG NFA+A G++ L+ NEGN R++TT VH+AI G+E+LV ++ D ++ +
Sbjct: 196 LEADIGISGCNFAVAESGSVVLISNEGNARLTTTLPKVHIAIMGMERLVPTWKDLDVVIS 255
Query: 258 LLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILADEKYYRALSCIRC 317
+L SA G IT Y I G R D+DGP+E H+I+LDN RS+IL Y L CIRC
Sbjct: 256 MLTRSATGQKITSYVTGINGARLHEDMDGPEEFHLIILDNGRSDILG-TAYEEVLKCIRC 314
Query: 318 GTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEVCPVE 377
G C+N CPVY IGGHAY S Y GPIG V++P L G +P SLCG CT+VCPV+
Sbjct: 315 GACVNVCPVYRNIGGHAYGSVYSGPIGAVLAPLLEGYEELKELPFASSLCGACTDVCPVK 374
Query: 378 IPLAELIRDLRSDKVGEGRGVIKGAKSTQHSGMEKFSMKMFAKMASDGAKWRFQLKMA-- 435
IPL +L+ + R D V +G + E+ + K F M S + +KMA
Sbjct: 375 IPLHDLLIEHRKDVVEQG----------FITKFEQLAFKGFTFMVSHPFVYEKAIKMAHT 424
Query: 436 --QFFSPLGKLLAPILPLVKEWASVRTLP 462
F+ G + PL K W R P
Sbjct: 425 GLSIFAKDGYIANGPGPL-KGWTESRDFP 452
>ref|NP_625116.1| (NC_003888) putative iron-sulfur protein [Streptomyces coelicolor
A3(2)]
pir||T36429 probable iron-sulfur protein SCF43A.06 [similarity] - Streptomyces
coelicolor
emb|CAB48893.1| (AL096837) putative iron-sulfur protein [Streptomyces coelicolor
A3(2)]
Length = 492
Score = 311 bits (796), Expect = 1e-83
Identities = 187/466 (40%), Positives = 260/466 (55%), Gaps = 31/466 (6%)
Query: 16 DQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILSRLDEYLELFE 75
+ +G+ LR NLR A T+R R + +W LRE GK++K L LD YL E
Sbjct: 17 EAVGNETLRGNLRHATHTIRDKRARAVAE-LDDWAALREAGKQIKDHTLRHLDRYLVQVE 75
Query: 76 KNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNHYLKEKGIQAQ 135
+ T G +H+A D DEANEI+ L +E ++K KSMA++EIGLN L+ +GI A
Sbjct: 76 EAVTAAGGTVHWAADADEANEIVARLVQETGESEVVKVKSMATQEIGLNEALQARGIHAY 135
Query: 136 ETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLN-------AAYEEEPEKLNAI 188
ETDL ELI+QL + P HI+VPAIH+NR +I IF +++ + P +L
Sbjct: 136 ETDLAELIVQLGKDRPSHILVPAIHRNRGEIRDIFRSEMSEWGRPAPEGLTDTPAELAEA 195
Query: 189 ARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKLVES 248
AR H+R++F K+GISG NF +A G + +VE+EGNGRM T + +++ GIEK+V
Sbjct: 196 ARLHLREKFLRAKVGISGANFVVAETGTLVVVESEGNGRMCLTLPETLISVVGIEKIVPR 255
Query: 249 FDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILADEKY 308
+ D + L S+ + Y ++ TG E DGP+ H++LLDN R++ LADE
Sbjct: 256 WQDLEVFLQTLPRSSTAERMNPYTSMWTGTTDE---DGPRTFHLVLLDNGRTDTLADEVG 312
Query: 309 YRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNY--GHIPNLCSL 366
+AL CIRC CLN CPVY++ GGHAY S YPGPIG ++SPQL G + +P SL
Sbjct: 313 RQALRCIRCSACLNVCPVYERAGGHAYGSVYPGPIGAILSPQLRGTASEIDASLPYASSL 372
Query: 367 CGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKG----AKSTQHSGMEKFSMKMFAKMA 422
CG C EVCPV I + E++ LR V G V G K + E+ +M+
Sbjct: 373 CGACYEVCPVAIDIPEVLVHLRERVVQGGAAVRDGNRVVLKPAKGHAAERAAMR------ 426
Query: 423 SDGAKWRF----QLKMAQFFSPLGKLLAP-ILP-LVKEWASVRTLP 462
A+W F L+ Q + + L P LP + W+ R LP
Sbjct: 427 --AAQWAFTHPGALRTGQRLASRTRRLHPRTLPGPGRAWSGTRDLP 470
>ref|NP_519733.1| (NC_003295) PUTATIVE IRON-SULFUR BINDING PROTEIN [Ralstonia
solanacearum]
emb|CAD15314.1| (AL646065) PUTATIVE IRON-SULFUR BINDING PROTEIN [Ralstonia
solanacearum]
Length = 469
Score = 294 bits (752), Expect = 2e-78
Identities = 164/459 (35%), Positives = 259/459 (55%), Gaps = 19/459 (4%)
Query: 9 EYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILSRLD 68
E++E +L D +L++NL R ++ ++ RE KE + + L LD
Sbjct: 7 EFKERAGQKLADKRLQQNLTKLSTKFVTARAAAIQE--IDFAATREALKERRDRALENLD 64
Query: 69 EYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNHYLK 128
+L FE AT+ G ++ +A+ +A ++ +A+ +++++K KSM +EE+ LN L
Sbjct: 65 VWLATFEAEATRRGARVLFAETTTDAARLVAEIARRHGVRKVIKSKSMVTEEMRLNQVLG 124
Query: 129 EKGIQAQETDLGELIIQLIN-EHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEPEKLNA 187
E G+Q+ ETDLGE I+Q+ + E P HI+ P +HK++++I +F + N + ++
Sbjct: 125 EMGVQSIETDLGEYILQINDSEPPSHIIAPVVHKDKEEIADLFAKTHNRPRLTDIPQMTR 184
Query: 188 IARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKLVE 247
AR+ +R EF S MG++G NF IA G++ LV NEGN M T VHVA+ GIEK++
Sbjct: 185 EAREVLRPEFLSADMGVTGGNFIIAETGSVALVTNEGNEGMCTVMPRVHVAVTGIEKVLP 244
Query: 248 SFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILADEK 307
+ +D A + LL SA G I+ Y +++TGPR G+ DGP+ + +++D RS ++ E
Sbjct: 245 TLEDLATVMRLLPRSATGQAISNYFSLLTGPRAAGEQDGPEHMYFVIVDGGRSGLIGGE- 303
Query: 308 YYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLC 367
+ L CIRCG C+NHCPVY KIGGHAY YPGP+G V++P GL+N +P +LC
Sbjct: 304 FQAMLRCIRCGACMNHCPVYQKIGGHAYGWVYPGPMGSVLTPSYVGLSNAIDLPQAATLC 363
Query: 368 GRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQHSGMEKFSMKMFAKMASDGAK 427
G C VCP IPL++L+R LR K + E+ ++++ MA A
Sbjct: 364 GECNRVCPASIPLSDLLRTLRE----------KQMERELRPPSERLGLRLWGFMARRPAL 413
Query: 428 W----RFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLP 462
+ R ++ ++ KL+ LP+ K W R +P
Sbjct: 414 YAAGSRVAARVLRWMGGDRKLIRS-LPVGKGWTDTRDMP 451
>ref|NP_267890.1| (NC_002662) iron-binding oxidase subunit [Lactococcus lactis subsp.
lactis]
gb|AAK05832.1|AE006403_10 (AE006403) iron-binding oxidase subunit [Lactococcus lactis subsp.
lactis]
Length = 490
Score = 285 bits (729), Expect = 8e-76
Identities = 177/478 (37%), Positives = 250/478 (52%), Gaps = 34/478 (7%)
Query: 6 SDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILS 65
S + + E + + D + + A D R++ ++ W+ R++ + ++ L
Sbjct: 6 STKTFAERLEESKKDQFAKAAVAKAQDAQWEKRESA-RDELGNWQEWRDIAESIRQHTLK 64
Query: 66 RLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNH 125
L YL F N G + +A D EAN+ + + EKN K+I+K KSM + E+ ++
Sbjct: 65 YLPHYLTEFSDNVAARGGHVFFAADAKEANDYVKRIVLEKNAKKIVKSKSMVTTEVDIDP 124
Query: 126 YLKEKG--IQAQETDLGELIIQLIN-EHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEP 182
L + ETDL E I+Q+ + + P HIV PA+HKNR QI +IF +KL + P
Sbjct: 125 MLVSLSDDMDILETDLAEFILQVADWDEPSHIVFPALHKNRDQIREIFAKKLGYEGDNNP 184
Query: 183 EKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGI 242
L AR MRK F ++GI+G NFAIAN G I L NEGN ++ + + + G+
Sbjct: 185 VNLARCARDTMRKLFLKSEVGITGCNFAIANTGDINLSTNEGNADLTISIPKTQIVLMGM 244
Query: 243 EKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNI 302
E++V S +A IL+N+LA SAVG +T Y G + + + DGP++ H++++DN RSN
Sbjct: 245 ERIVPSIKEAEILDNMLARSAVGQKLTTYVTF-AGQQADDESDGPEDFHVVIVDNGRSNA 303
Query: 303 LADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPN 362
+ + L CIRCG CLN CPVY +IGGHAY S YPGPIG V+SP L G YG +P
Sbjct: 304 IGTA-FEAVLQCIRCGACLNVCPVYRQIGGHAYGSIYPGPIGSVLSPVLGGYEQYGDLPY 362
Query: 363 LCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQHSG-MEKFSMKMFAKM 421
+LCG CTE CPV+IPL EL+ E R V++ S H G F M K
Sbjct: 363 ASTLCGACTETCPVKIPLHELLI--------EHRKVMEDDLSMHHDGSFVNFEMNTIGKG 414
Query: 422 ASDGAKWRFQLKM----------AQFFSPLGKLL-------APILPLVKEWASVRTLP 462
S A + + M A+ S G L AP L K W VR LP
Sbjct: 415 TSSPALFGMAINMAHTGLNMLPKAKEVSVEGSLFNYGAVRKAP--ALAKGWTDVRDLP 470
>ref|NP_295631.1| (NC_001263) ferredoxin, putative [Deinococcus radiodurans]
Length = 347
Score = 265 bits (678), Expect = 7e-70
Identities = 143/340 (42%), Positives = 206/340 (60%), Gaps = 6/340 (1%)
Query: 5 HSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKIL 64
H Q + + +Q+ QLR NLR T+R R N++ WE LR+LG K L
Sbjct: 8 HPAQPFPKAAREQVLKAQLRANLRKVTYTIRDKRANVVAE-LPHWEGLRDLGAATKNASL 66
Query: 65 SRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLN 124
++L + L EK+ G ++H+A+D EA +I+ +AK + ++K KS+ S+EI LN
Sbjct: 67 AQLSDRLLELEKSVKARGGQVHWARDAKEARDIVARIAKAHAVDELIKVKSITSDEIELN 126
Query: 125 HYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKL--NAAYEEEP 182
L+EKGI A ETDL ELI+QL N+ P HI+VPAIH+NR +I +F +L + + P
Sbjct: 127 KALEEKGIHAIETDLAELIVQLSNDRPSHILVPAIHRNRAEIQALFNAELPGEGSLPDTP 186
Query: 183 EKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGI 242
+L AR+++R +F + KM +SG NFAIA G + +VE+EGNGRM T +V V+I GI
Sbjct: 187 AELAGAARRYLRHKFLTTKMAVSGANFAIAETGTVCVVESEGNGRMCLTMPEVLVSIMGI 246
Query: 243 EKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNI 302
EK++E +D ++ LL S+ + Y + +G DGP+E H++LLDN R+N+
Sbjct: 247 EKVLEKVEDISVFMELLPRSSTAERMNPYNSFWSGVTPG---DGPQEFHLVLLDNGRTNV 303
Query: 303 LADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGP 342
LADE + L CIRC CLN CPVY++ GGHA P P
Sbjct: 304 LADEFGRQTLRCIRCSACLNVCPVYERAGGHATARCIPAP 343
>ref|NP_602367.1| (NC_003454) Iron-sulfur cluster-binding protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL93666.1| (AE010463) Iron-sulfur cluster-binding protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 719
Score = 239 bits (609), Expect = 7e-62
Identities = 138/364 (37%), Positives = 199/364 (53%), Gaps = 15/364 (4%)
Query: 48 EWENLRELGKEVKLKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNI 107
++E RE EVK +DE + F N G +++AK ++A E I L KEK +
Sbjct: 42 DFEKTREKIAEVKSYAAEHIDEMIAEFTTNCEARGGHVYHAKSTEDAMEWIRQLVKEKGV 101
Query: 108 KRILKQKSMASEEIGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIG 167
K I+K KSMASEEI +NH L + G+ QETDLGE II L PVH+V+PA+H N++Q+
Sbjct: 102 KTIVKSKSMASEEIKMNHVLTDDGVLVQETDLGEFIIALEGNTPVHMVMPALHLNKEQVA 161
Query: 168 KIFEE----KLNAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENE 223
+F + K N EE + AR+ MR +F MG+SG N A+A G ++ + NE
Sbjct: 162 DLFTDYTKVKNNPIISEEVK----TARRVMRDKFTHADMGVSGANVAVAETGTVFTMTNE 217
Query: 224 GNGRMSTTACDVHVAICGIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITG-----P 278
GNGRM T +H+ + GIEK V+S DA + L + IT Y ++ TG
Sbjct: 218 GNGRMVGTLPPIHLYVFGIEKFVKSLSDARYIFKALPRNGTAQRITSYISMYTGACEVTT 277
Query: 279 RKEGDLDGPKEAHIILLDN-NRSNILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLS 337
KE D K+ + ++LD+ R ILA+ + +CIRCG CL+ CP + +GGH Y S
Sbjct: 278 NKETDEKCKKDFYCVILDDPGRREILAEPDFREIFNCIRCGACLDVCPAFALVGGHVYGS 337
Query: 338 -TYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGR 396
Y G IG +++ L I N+C CGRC EVC + ++++I LR + +
Sbjct: 338 NVYTGGIGTMLTHFLVSEERAAEIQNICLQCGRCNEVCGGGLHISDMIMKLREKNMKDNP 397
Query: 397 GVIK 400
+K
Sbjct: 398 DALK 401
>gb|AAC18358.1| (AF064763) putative iron-binding protein [Lactococcus lactis subsp.
cremoris]
Length = 368
Score = 233 bits (593), Expect = 5e-60
Identities = 131/302 (43%), Positives = 177/302 (58%), Gaps = 12/302 (3%)
Query: 136 ETDLGELIIQLIN-EHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEPEKLNAIARKHMR 194
ETDL E I+Q+ + + P HIV PA+HKNR QI +IF +KL + P L AR MR
Sbjct: 15 ETDLAEFILQVADWDEPSHIVFPALHKNRDQIREIFAKKLGYEGDNNPVNLARCARDTMR 74
Query: 195 KEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKLVESFDDAAI 254
K F ++GI+G NFAIAN G I L NEGN ++ + + + G+E++V S +A I
Sbjct: 75 KLFLKSEVGITGCNFAIANTGDINLSTNEGNADLTISIPKTQIVLMGMERIVPSIKEAEI 134
Query: 255 LNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILADEKYYRALSC 314
L+N+LA SAVG +T Y G + + + DGP++ H++++DN RSN + + L C
Sbjct: 135 LDNMLARSAVGQKLTTYVTF-AGQQADDESDGPEDFHVVIVDNGRSNAIGTA-FEAVLQC 192
Query: 315 IRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEVC 374
IRCG CLN CPVY +IGGHAY S YPGPIG V+SP L G YG +P +LCG CTE C
Sbjct: 193 IRCGACLNVCPVYRQIGGHAYGSIYPGPIGSVLSPVLGGYEQYGDLPYASTLCGACTETC 252
Query: 375 PVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQHSG-MEKFSMKMFAKMASDGAKWRFQLK 433
PV+I L EL+ E R V++ + H G F M + S A + +
Sbjct: 253 PVKISLHELLI--------EHRKVMEDDLNMHHDGSFVNFEMNTIGRGTSSPALFGMAIN 304
Query: 434 MA 435
MA
Sbjct: 305 MA 306
>ref|NP_344441.1| (NC_002754) Iron-sulfur protein, conserved putative [Sulfolobus
solfataricus]
gb|AAK43231.1| (AE006903) Iron-sulfur protein, conserved putative [Sulfolobus
solfataricus]
Length = 384
Score = 226 bits (577), Expect = 4e-58
Identities = 130/348 (37%), Positives = 205/348 (58%), Gaps = 14/348 (4%)
Query: 50 ENLRELGKEVKLKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKR 109
E+L +E KL++LS LD Y+E+ K+ + G K ++ ++ ++A EI+ + N KR
Sbjct: 31 EDLARKVREGKLEVLSNLDYYIEMTMKSVERIGGKAYFVENAEQAREIVGKIVG--NGKR 88
Query: 110 ILKQKSMASEEIGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKI 169
++ KSM + E G+ YL+ G + ETDLGEL+IQ +E P HI+ PA+H R++I ++
Sbjct: 89 VVMGKSMVAYETGIRKYLQSLGNEVWETDLGELLIQFADEPPSHIIAPAVHMTRERIREL 148
Query: 170 FEEKLNAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMS 229
+EKL ++ E + +AR+ +R++F + +GI+G N A+ G+I LVENEGN RMS
Sbjct: 149 IKEKLGVDPGDKHEDIVKVAREFLRQKFLTADIGITGANAVAADAGSIVLVENEGNIRMS 208
Query: 230 TTACDVHVAICGIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLD---- 285
+ VH++I G+EK++ + + AI L+ + G+ Y N+ +GP GD++
Sbjct: 209 SVVPPVHISITGVEKILPNL-EYAIYEALVQAAYAGLYPPTYINVTSGPSSTGDVEQKRV 267
Query: 286 ----GPKEAHIILLDNNRSNILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPG 341
GPKE H+IL+DN R D AL CIRCG C HCPVY + G Y G
Sbjct: 268 SPAHGPKEFHLILVDNGRRKANEDPVLREALLCIRCGRCHFHCPVYRVLDGKWGDPPYSG 327
Query: 342 PIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEVCPVEIPLAELIRDLRS 389
P+G + S ++ N+Y LCS G C EVCP++I + +++ L++
Sbjct: 328 PMGAMWSGIVY--NDY-KPALLCSHAGNCREVCPMKINIPKVLEYLKN 372
>ref|NP_377627.1| (NC_003106) 383aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB66736.1| (AP000987) 383aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 383
Score = 216 bits (551), Expect = 4e-55
Identities = 125/343 (36%), Positives = 199/343 (57%), Gaps = 18/343 (5%)
Query: 57 KEVKLKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSM 116
+E K+++LS L+ Y+E ++ + G ++ + +EA EI+ + + I ++ KSM
Sbjct: 38 REAKMRVLSDLETYVEQTLESVKRTGGNAYFVNNAEEAKEIVGKIVGKGKI--VVFGKSM 95
Query: 117 ASEEIGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNA 176
+ E G+ YL++ G + ETDLGE +IQL +E P HI+ PA+H ++++ K+ +EKL
Sbjct: 96 VAYESGIRKYLQQLGNEVWETDLGEFLIQLADEPPSHIIAPAVHMTKERVAKLLKEKLGF 155
Query: 177 AYEEEP--EKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACD 234
E E+L R+ +R +F S +GI+G N A+ G+I LVENEGN RMST
Sbjct: 156 DVSESSSHEELVQKVREFLRNKFLSANVGITGANAVAADVGSIVLVENEGNIRMSTVVPP 215
Query: 235 VHVAICGIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLD--------G 286
VH+AI G+EK+V + +D A++ L+ + G+ Y N+ +GP GD++ G
Sbjct: 216 VHIAIVGVEKIVPTLED-ALIEALVQAAYAGLYPPTYINVTSGPSSTGDIEMKRVSPAHG 274
Query: 287 PKEAHIILLDNNRSNILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVV 346
PKE H+IL+DN R D AL CIRCG C HCP+Y + G+ + Y GP+G +
Sbjct: 275 PKEFHLILVDNGRLKASKDPILREALLCIRCGRCHLHCPIYRILDGNWGDAPYSGPMGAM 334
Query: 347 VSPQLFGLNNYGHIPNL-CSLCGRCTEVCPVEIPLAELIRDLR 388
S ++ N+Y P L C+ G C EVCP++I + ++ ++
Sbjct: 335 WSYIIY--NDYK--PALYCTHSGNCKEVCPMKINIPRVLEYIK 373
>ref|NP_559196.1| (NC_003364) conserved hypothetical protein [Pyrobaculum aerophilum]
gb|AAL63378.1| (AE009813) conserved hypothetical protein [Pyrobaculum aerophilum]
Length = 379
Score = 212 bits (539), Expect = 9e-54
Identities = 120/353 (33%), Positives = 186/353 (51%), Gaps = 11/353 (3%)
Query: 45 RYSEWENLRELGKEVKLKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKE 104
RY + +R + VK +++ LD Y+E K + G + + A G +A EI +
Sbjct: 24 RYPHLQEIRRQLRSVKEEVVKNLDYYIEETRKAVERIGGRFYLADSGKDAVEIAAKIVGR 83
Query: 105 KNIKRILKQKSMASEEIGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRK 164
K ++ K+ +EE GL L+E+G + ETDLG ++Q+ E P HI+ PA+H ++
Sbjct: 84 G--KTVVMSKNNVAEETGLRKRLEEEGNEVWETDLGAFLVQITGEEPSHILAPAVHLTKE 141
Query: 165 QIGKIFEEKLNAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEG 224
++ ++ EK ++ A R+ +R++F ++GI+G N A+ GA+ LVENEG
Sbjct: 142 RVAQVLREKFGVVVAPNAVEIAARVREFLREKFMKAEVGITGANAIAADTGAVVLVENEG 201
Query: 225 NGRMSTTACDVHVAICGIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDL 284
N RM+T VHV G+EK+V + A ++ +L + A P T Y NI GP D+
Sbjct: 202 NIRMTTVIPPVHVVYDGVEKIVPTLIHAQLVADLQSAYAGLYPPT-YMNISAGPSSTADI 260
Query: 285 D--------GPKEAHIILLDNNRSNILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYL 336
+ GP+E H+IL+DN R N D + AL CIRCG C HCPVY +G
Sbjct: 261 EMTRVSPAQGPREYHMILVDNGRRNAARDPVLWEALLCIRCGRCHLHCPVYLAVGKEFGK 320
Query: 337 STYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEVCPVEIPLAELIRDLRS 389
Y GP+GV+ + G+ G C G C VCP+ I + +I ++R+
Sbjct: 321 PPYTGPMGVMWTAITRGVEEAGRHALKCVHAGSCKSVCPMNIDIPRIIHEIRA 373
>ref|NP_395861.1| (NC_002608) Vng6379c [Halobacterium sp. NRC-1]
gb|AAG20996.1| (AE005166) Vng6379c [Halobacterium sp. NRC-1]
Length = 727
Score = 210 bits (534), Expect = 3e-53
Identities = 133/447 (29%), Positives = 218/447 (48%), Gaps = 35/447 (7%)
Query: 22 QLRENLRSAMDTLRANRKNLLKNRYS------EWENLRELGKEVKLKILSRLDEYLELFE 75
++R L + D + N + + RY +++ L+ + +K + RL E ++
Sbjct: 12 RIRHLLDTEGDAVHENTQVFNEGRYESTANLDDYDELKNEARAIKEDAIERLPELIDQVT 71
Query: 76 KNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNHYLKEKGIQAQ 135
+ NG ++ A D +AN + + +++ +K KSM SEEI +N L+ +G
Sbjct: 72 EAVEANGGSVYVADDAADANRYMEEVVDGRDV---VKSKSMTSEEIEVNESLEARGGDVW 128
Query: 136 ETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEP----EKLNAIARK 191
ETDL E ++Q+ +E P HIV PAIHK+R++I +F E + EEP E+L AR+
Sbjct: 129 ETDLAEFVLQVADEAPSHIVAPAIHKSREEIATLFNEVFDP---EEPLETAEELTRFARE 185
Query: 192 HMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKLVESFDD 251
++ ++ ++G++G NF A+ G + LV +EGN R A D HVA+ G+EKLV S +D
Sbjct: 186 YLGEKILDAEVGMTGANFVTADTGTLALVTSEGNARKCVQATDTHVAVAGVEKLVPSVED 245
Query: 252 AAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDG-------PKEAHIILLDNNRSNILA 304
L+ S G IT Y ++ T P G +E H++L+DN R +
Sbjct: 246 LQPFVELIGRSGTGQDITSYVSLFTPPSDSPTFGGNELESGDDREFHLVLIDNGRMEMRE 305
Query: 305 DEKYYRALSCIRCGTCLNHCPVYDKIGGHAY-LSTYPGPIGVVVSPQLFGLNNYGHIPNL 363
D++ L CIRC C N C + +GGHA+ TY G I + G ++ +L
Sbjct: 306 DDQLRETLYCIRCSACANSCANFQHVGGHAFGGETYSGGIATGWEAGVHGEDSAAEFNDL 365
Query: 364 CSLCGRCTEVCPVEIPLA---ELIRD-LRSDKVGEGRGVIKGAKSTQHSGMEKFSMKMFA 419
C+ C RC CPV I + ++RD + K G+ +++G + G ++F
Sbjct: 366 CTGCSRCVNQCPVNIDIPWINTVVRDRINRGKDGDLDFLVEGLTPDEEPGGVDLQKRLFG 425
Query: 420 KMASDGAKWRFQLKMAQFFSPLGKLLA 446
+ K+ F+PL A
Sbjct: 426 NFDT-------LAKLGSAFAPLSNWAA 445
>emb|CAB07993.1| (Z94043) hypothetical protein [Bacillus subtilis]
Length = 288
Score = 210 bits (534), Expect = 3e-53
Identities = 110/281 (39%), Positives = 179/281 (63%), Gaps = 4/281 (1%)
Query: 10 YEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILSRLDE 69
++E ++ + + +R + A + LR R + WE R L +E++ +L LD
Sbjct: 10 FKERVSQGIDNEFMRGAVSGAQERLRTRRLEAAEE-LGNWEEWRSLSEEIRQHVLENLDF 68
Query: 70 YLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNHYLKE 129
YL +N + G +++AK +EA+ I ++ ++KN K+I+K KSM +EEI LN L++
Sbjct: 69 YLGQLAENVAKRGGHVYFAKTAEEASSYIRDVIQKKNGKKIVKSKSMVTEEINLNEVLEK 128
Query: 130 KGIQAQETDLGELIIQLINEH--PVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEPEKLNA 187
+G + ETDLGE I+Q I++H P HIV PA+HKN++QI +F+E+L+ + E+PE+L
Sbjct: 129 EGCEVVETDLGEYILQ-IDDHDPPSHIVAPALHKNKEQIRDVFKERLDYQHTEKPEELVM 187
Query: 188 IARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKLVE 247
AR +RK+F +GI+G NFAIA+ G++ LV NEGNGR+ +T + + G+E++V
Sbjct: 188 HARAILRKKFLEADIGITGCNFAIADTGSVSLVTNEGNGRLVSTLPKTQITVMGMERIVP 247
Query: 248 SFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPK 288
SF + +L ++L SAVG +T Y +TGP+ EG++DGP+
Sbjct: 248 SFSEFEVLVSMLTRSAVGQRLTSYITALTGPKLEGEVDGPE 288
>ref|NP_069645.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||C69351 probable iron-sulfur protein AF0811 [similarity] - Archaeoglobus
fulgidus
gb|AAB90430.1| (AE001048) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 364
Score = 191 bits (484), Expect = 2e-47
Identities = 124/377 (32%), Positives = 202/377 (52%), Gaps = 24/377 (6%)
Query: 14 ITDQLGDMQLRENLRSAMDTLRAN-RKNLLKNRYSEWENLRELGKEVKLKILSRLDEYLE 72
I D L ++E + ++ L N R+N+ + Y + E K KLK+ D +++
Sbjct: 3 IYDALRRKSIKEGILRSLRNLSENVRRNVENHPYLI--DFAEDVKSAKLKVAENYDFWID 60
Query: 73 LFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNHYLKEKGI 132
+ G ++YA+ +EA +I + E K ++K KSM SEEI L +L++ G
Sbjct: 61 KAKDVLESRGVNVYYAESAEEARKIAGKVVGEG--KLVVKAKSMVSEEIHLREWLEKIGN 118
Query: 133 QAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEPEKLNAIARKH 192
+ ETDLGELI+Q+ + P+H+V+PA+H + +++G+I K E E L RK
Sbjct: 119 EVWETDLGELIVQVAGDKPMHMVIPALHYSEQEVGEIL--KRIGVEGESAEVLAREVRKF 176
Query: 193 MRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKLVESFDDA 252
MR++F +G+SG N A G I+L+ENEGN R+ST+ ++A+ IEK++ + D
Sbjct: 177 MREKFLKADVGVSGCNAFSAETGRIFLIENEGNIRLSTSLPKTYLALVSIEKILPT--DE 234
Query: 253 AILNNLLAPSA-VGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILADEKYYRA 311
L ++ SA G Y N+ +++ + H+ILLDN R N ++
Sbjct: 235 LCLKSICVQSAFFGTFPPAYINVNEKVQQQ-------DMHVILLDNGRKN----TQFREQ 283
Query: 312 LSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCT 371
L+C+RCG C CPV+ G Y GP+G++ S + +Y L +LCG+C
Sbjct: 284 LACVRCGRCQLECPVFQLAGNVWGGEVYGGPMGMIWSAITDAITDYCF---LSTLCGKCR 340
Query: 372 EVCPVEIPLAELIRDLR 388
EVCP++I + +IR++R
Sbjct: 341 EVCPMKIDMPRMIREIR 357
>ref|NP_275283.1| (NC_000916) conserved protein [Methanothermobacter
thermautotrophicus] [Methanothermobacter
thermautotrophicus str. Delta H]
pir||D69053 probable iron-sulfur protein MTH140 [similarity] - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB84646.1| (AE000803) conserved protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 396
Score = 190 bits (483), Expect = 3e-47
Identities = 121/359 (33%), Positives = 178/359 (48%), Gaps = 21/359 (5%)
Query: 48 EWENLRELGKEVKLKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNI 107
E L + + ++ + L+E + + T+NG + H A D D+A IIY + I
Sbjct: 28 EVAELADRVRTIRESSIENLNELIAGASERFTENGVEFHLAADADDACRIIYESLEGDTI 87
Query: 108 KRILKQKSMASEEIGLNHYLKEKGIQAQETDLGELIIQLIN-EHPVHIVVPAIHKNRKQI 166
K KS EIGL YL+ +G++ ETDLG+ I+QL P H V PA+H +I
Sbjct: 88 A---KSKSNTLSEIGLADYLRRRGVEVIETDLGDRILQLAGIGKPAHPVGPALHLGVSEI 144
Query: 167 GKIFEEKLNAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGN- 225
I +KL A ++P ++ R + + GI+G N A++G+ +V NEGN
Sbjct: 145 AAIVRDKLEADIRDDPHEIMEAVRSDILQSIAECSAGITGANSVAASDGSAVIVHNEGNV 204
Query: 226 GRMSTTACDVHVAICGIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLD 285
R+S D H+ + G++KLV +DA + L A G + Y N+I+GP K D++
Sbjct: 205 ARLS--LMDTHIMVFGVDKLVPQIEDAVSVVKLETAYATGTRVPSYINVISGPSKTADIE 262
Query: 286 --------GPKEAHIILLDNNRSNILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLS 337
G + +DN RS E Y AL CI CG+C+ CPVY+ +G
Sbjct: 263 KMLLTGMYGASRVIAVAVDNGRS-----EAYPEALLCIGCGSCIVSCPVYNTVGNRFGYR 317
Query: 338 TYPGPIGVVVSPQLFGLNNYGHIP-NLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEG 395
Y G GVV+S + G +C+LCG CTE CPV P AE++ LR + V G
Sbjct: 318 GYLGGRGVVMSSFIDGREAAAESGLYMCTLCGLCTEKCPVRPPAAEMMDRLRRNCVAAG 376
>ref|NP_111111.1| (NC_002689) Uncharacterized conserved protein [Thermoplasma
volcanium]
dbj|BAB59734.1| (AP000992) iron-sulfur protein [Thermoplasma volcanium]
Length = 381
Score = 190 bits (482), Expect = 4e-47
Identities = 119/354 (33%), Positives = 195/354 (54%), Gaps = 24/354 (6%)
Query: 57 KEVKLKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSM 116
+E KLK+++ LD Y++ + + G + AKD DEA +II +L EK K ++ K+
Sbjct: 36 REQKLKVIANLDTYVKRTMDSVEKLGGHAYLAKDKDEARKIIGDLVGEK--KTVVFSKTN 93
Query: 117 ASEEIGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNA 176
+ EIGL +L+E+ + ETDLGE ++Q+ P HIV PA+ R++ K + K++
Sbjct: 94 VAYEIGLREFLQERNNEVWETDLGEYLVQISRGWPTHIVAPALDMTREEAAKAVK-KIDP 152
Query: 177 AYEEEP--EKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACD 234
+ E E + A RK + ++ +GI+G N A+ G++ LVENEGN R+ T
Sbjct: 153 SINENSKIEDIVAAVRKFLMSKYVKADVGITGANAVAADSGSVALVENEGNIRIDTVMPP 212
Query: 235 VHVAICGIEKLVESFDDAAILNNLLAPSA-VGVPITCYQNIITGPRKEGDLD-------- 285
+H+A+ GI+K+V + DA L+ ++ +A G+ Y N+ +GP D++
Sbjct: 213 MHIAVTGIDKIVPTMRDA--LDEVMVQAAYAGIFPPTYINVTSGPSSTADIELRRVSPAT 270
Query: 286 GPKEAHIILLDNNRSNILADEKYYRALSCIRCGTCLNHCPVYDKIGGH--AYLSTYPGPI 343
GPK+ H++L+DN R +E AL CI+CG C CP+Y +G + S Y GP
Sbjct: 271 GPKDFHLVLIDNGRLEASKNEDLKEALLCIKCGRCYFSCPIYRTLGKEWISTKSPYNGPT 330
Query: 344 GVVVSPQLFGLNNYGHIPNLCSLCGRCTEVCPVEIPLAELIRDLR---SDKVGE 394
GV+ + + N + C G C EVCP++I + E+I+ ++ S +VG+
Sbjct: 331 GVMWN---YITNKDPWPASYCVHSGGCKEVCPMKINIPEVIKYIKFIGSKQVGK 381
>ref|NP_394013.1| (NC_002578) conserved iron-sulfur protein [Thermoplasma
acidophilum]
emb|CAC11678.1| (AL445064) conserved iron-sulfur protein [Thermoplasma acidophilum]
Length = 373
Score = 187 bits (476), Expect = 2e-46
Identities = 124/359 (34%), Positives = 192/359 (52%), Gaps = 26/359 (7%)
Query: 47 SEWENLRELG---KEVKLKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAK 103
+E+ + EL ++ K+K++ LD Y+ L KN + G + AKD +EA +I +L
Sbjct: 17 TEYPYIAELADHLRDQKMKVIENLDSYVSLTIKNVERLGGHAYLAKDKEEARKIAGDLVG 76
Query: 104 EKNIKRILKQKSMASEEIGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNR 163
+ K ++ K+ + EIGL YL+ K + ETDLGE +IQ+ P HIV PA+ R
Sbjct: 77 DN--KTVVFSKTNVAYEIGLREYLESKHNEVWETDLGEYLIQISKGWPTHIVAPALGMTR 134
Query: 164 KQIGKIFEEKLNAAYEEEP--EKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVE 221
+ K + K++ + E E + A RK + ++ +GI+G N A+ GAI LVE
Sbjct: 135 EDAAKAVK-KIDPSINENSTIEDVVAAVRKFLMSKYVKADVGITGANAVAADSGAIALVE 193
Query: 222 NEGNGRMSTTACDVHVAICGIEKLVESFDDAAILNNLLAPSA-VGVPITCYQNIITGPRK 280
NEGN R+ T H++I GI+K+V + DA L+ ++ SA G+ Y N+ GP
Sbjct: 194 NEGNIRIDTVMPQTHISITGIDKIVPTLRDA--LDEVMVQSAYAGLFPPTYINVTAGPSS 251
Query: 281 EGDLD--------GPKEAHIILLDNNRSNILADEKYYRALSCIRCGTCLNHCPVYDKIGG 332
D++ GPK H+ILLD+ R + DE AL CI+CG C CP+Y ++ G
Sbjct: 252 TADIELRRVSPATGPKNFHLILLDDGRMDASKDEGLKEALLCIKCGRCYFSCPIY-RVLG 310
Query: 333 HAYLST---YPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEVCPVEIPLAELIRDLR 388
++ST Y GP GV+ + + N + C G C EVCP+ I + E+I+ ++
Sbjct: 311 KEWVSTKSPYNGPTGVMWN---YITNKDPWPASYCVHSGGCKEVCPMRINIPEVIKYIK 366
>ref|NP_147089.1| (NC_000854) hypothetical protein [Aeropyrum pernix]
pir||C72784 hypothetical protein APE0258 - Aeropyrum pernix (strain K1)
dbj|BAA79173.1| (AP000058) 313aa long hypothetical protein [Aeropyrum pernix]
Length = 313
Score = 155 bits (393), Expect = 8e-37
Identities = 103/297 (34%), Positives = 166/297 (55%), Gaps = 17/297 (5%)
Query: 14 ITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGK--EVKLKILSRLDEYL 71
++ LGD +E L M + N++ + + S E L K EVK + + RL E +
Sbjct: 15 VSRALGDKDFQEGL---MKSGLNNQRKVAEILSSHPEILEAAKKVTEVKRESVKRLGELV 71
Query: 72 ELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNHYLKEKG 131
E ++ + G +YA+ ++A EI+ + +I ++ KSMA+EEIGL +L+ G
Sbjct: 72 ERAVESLRRVGANPYYAETAEDAREIVGKIVGSGSI--VVMSKSMAAEEIGLREHLESMG 129
Query: 132 IQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEE-EPEKLNAIAR 190
+ ETDLG+L++ L P+H V PA+H R++ +I EKL +E + E + A R
Sbjct: 130 NEVWETDLGQLLVMLEGVKPMHNVAPAVHMTRERAARIIREKLGIEVDERDVEGMVAAVR 189
Query: 191 KHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKLVESFD 250
+ +R++F ++GI+G N A+ G I LVENEGN R+ ++ VHVA+ I+K+V S
Sbjct: 190 EFLREKFFKARVGITGANSMSADTGTIVLVENEGNIRLVSSLPPVHVALVPIDKIVPSVW 249
Query: 251 DAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLD--------GPKEAHIILLDNNR 299
DA + L+ + G + Y ++ITGP GD++ GP+E H++LLDN R
Sbjct: 250 DAVNV-ALVQAAFAGFWMPVYISLITGPSATGDIEQIKVLGAHGPREVHVVLLDNGR 305
>sp|P06130|FDHB_METFO FORMATE DEHYDROGENASE BETA CHAIN
pir||B24698 formate dehydrogenase (EC 1.2.1.2) chain B - Methanobacterium
formicicum
gb|AAA72183.1| (J02581) formate dehydrogenase B (fdhB) [Methanobacterium
formicicum]
Length = 399
Score = 49.3 bits (116), Expect = 1e-04
Identities = 29/95 (30%), Positives = 47/95 (48%), Gaps = 13/95 (13%)
Query: 314 CIRCGTCLNHCPV-------YDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSL 366
C++C C CP+ + G +LS G + +F L H+ C+
Sbjct: 296 CLKCYGCREACPICYCEDCCLEANNGPDWLSK-----GEIPPSPMFHLERMLHMVESCTN 350
Query: 367 CGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKG 401
CG+C EVCP EIPLA++ ++ + K+ + G +KG
Sbjct: 351 CGQCEEVCPGEIPLAKIWHEVNA-KMKDTFGYVKG 384
>ref|NP_602366.1| (NC_003454) Iron-sulfur cluster-binding protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL93665.1| (AE010463) Iron-sulfur cluster-binding protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 183
Score = 47.4 bits (111), Expect = 4e-04
Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 27/176 (15%)
Query: 132 IQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEPEKLNAIARK 191
++ + +LG++I +L EH V + K+ G + + N +
Sbjct: 24 MRTPKAELGKVITELFKEHNVDSISLFESPMLKEAGVVSSLQQNGI---------TVHTD 74
Query: 192 HMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAICGIEKLVESFDD 251
H+R E+ K G+S IA G I +++ +GRM T + ++ + +V ++DD
Sbjct: 75 HIRLHAETDKGGLSEAQHGIAELGTIVQEQDDADGRMVATMSEYYIGVVKGSTIVPTYDD 134
Query: 252 A-AILNNL-LAPSAVGVPITCYQNIITGPRKEGDLD--------GPKEAHIILLDN 297
IL+ + P+ VG ITGP + D++ GP + I+++D+
Sbjct: 135 MFDILSGMKKIPNFVG--------FITGPSRTADIECVGTVGVHGPIDVSIVIVDD 182
>ref|NP_147267.1| (NC_000854) hypothetical protein [Aeropyrum pernix]
pir||B72744 hypothetical protein APE0481 - Aeropyrum pernix (strain K1)
dbj|BAA79446.1| (AP000059) 102aa long hypothetical protein [Aeropyrum pernix]
Length = 102
Score = 47.0 bits (110), Expect = 5e-04
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 314 CIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNY---GHIPNL--CSLCG 368
CI CG C CP Y GP G V S +L L+ G + +L C LCG
Sbjct: 19 CIYCGFCEPVCPTLPFGRHRGY-----GPRGRVFSARLVALDGKATEGDLESLYSCLLCG 73
Query: 369 RCTEVCPVEIPLAELIRDLRSDKVGEGR 396
C EVCP I + ++R+ R+ G R
Sbjct: 74 ACMEVCPARIDIVSVVREARALITGMNR 101
>sp|Q50570|FDHB_METTF Formate dehydrogenase beta chain
gb|AAC44821.1| (U52681) FdhB [Methanothermobacter thermautotrophicus]
Length = 394
Score = 46.2 bits (108), Expect = 9e-04
Identities = 29/94 (30%), Positives = 47/94 (49%), Gaps = 2/94 (2%)
Query: 314 CIRCGTCLNHCPV-YDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTE 372
CI+C +C CP+ Y + + G + LF L H+ + C+ CG+C E
Sbjct: 295 CIKCYSCREACPICYCEECSLETKTPEWIEKGKIPPSPLFHLERMLHMVDSCTNCGQCEE 354
Query: 373 VCPVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQ 406
+CP EIPLA++ ++ +V E G G ++ Q
Sbjct: 355 LCPAEIPLAKIWHEINC-RVQETFGYKTGFETGQ 387
>emb|CAA70997.1| (Y09870) heterodisulfide reductase [Methanosarcina barkeri]
Length = 409
Score = 45.4 bits (106), Expect = 0.001
Identities = 28/101 (27%), Positives = 42/101 (40%), Gaps = 16/101 (15%)
Query: 313 SCIRCGTCLNHCPVYDKIGGH-------------AYLSTYPGPIGVVVSPQLFG---LNN 356
+C+RCG C+ CP Y GGH Y++ G + PQ L
Sbjct: 23 ACVRCGECVKWCPTYAASGGHQGLAPRDKILRWRQYMNKSYGLKAKLFGPQEVSPSELEE 82
Query: 357 YGHIPNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRG 397
+ + C+ CG C VC I E+ +R++ V +G G
Sbjct: 83 FKDDVHGCTTCGVCATVCEAGINTVEIWEAIRTNLVKKGIG 123
>ref|NP_207460.1| (NC_000915) anaerobic glycerol-3-phosphate dehydrogenase, subunit C
(glpC) [Helicobacter pylori 26695]
pir||B64603 anaerobic glycerol-3-phosphate dehydrogenase, subunit C -
Helicobacter pylori (strain 26695)
gb|AAD07728.1| (AE000579) anaerobic glycerol-3-phosphate dehydrogenase, subunit C
(glpC) [Helicobacter pylori 26695]
Length = 433
Score = 44.3 bits (103), Expect = 0.003
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 313 SCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLN------NYGHIPNLCSL 366
+C++C C+ C +Y + P G + +L N N H+ C L
Sbjct: 16 ACVKCAKCVPGCTIY-----RIHKDEATSPRGFLDLMRLNAQNKLQLDTNLKHLLETCFL 70
Query: 367 CGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKGAKS 404
C C E+CP +P+ LI R +K+ + G+ KS
Sbjct: 71 CTACVEICPFHLPIDTLIEKAR-EKIAQKHGIAWYKKS 107
>ref|NP_246968.1| (NC_000909) formate dehydrogenase, beta subunit [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q60316|FDHB_METJA Putative formate dehydrogenase beta chain
pir||E64300 formate dehydrogenase (EC 1.2.1.2) beta chain - Methanococcus
jannaschii
gb|AAB97986.1| (U67459) formate dehydrogenase, beta subunit [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
Length = 379
Score = 44.3 bits (103), Expect = 0.003
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 306 EKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCS 365
+KY+ CI+C C ++CP+ + + +P +F HI C
Sbjct: 274 KKYWNR--CIKCYGCRDNCPLCFCVECSLEKDYIEEKGKIPPNPLIFQGIRLSHISQSCI 331
Query: 366 LCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKGAKST 405
CG+C + CP++IPLA + ++ K+ + G I G ++
Sbjct: 332 NCGQCEDACPMDIPLAYIFHRMQL-KIRDTLGYIPGVDNS 370
>ref|NP_147088.1| (NC_000854) ferredoxin [Aeropyrum pernix]
pir||B72784 probable ferredoxin APES006 - Aeropyrum pernix (strain K1)
dbj|BAA79172.1| (AP000058) 56aa long hypothetical ferredoxin [Aeropyrum pernix]
Length = 56
Score = 44.3 bits (103), Expect = 0.003
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 358 GHIPNLCSLCGRCTEVCPVEIPLAELIRDLRS 389
G I LC CGRC EVCPVEIPL+ +I L++
Sbjct: 16 GEISYLCLGCGRCDEVCPVEIPLSSIISKLKA 47
>ref|NP_561496.1| (NC_003366) probable iron-sulfur binding reductase [Clostridium
perfringens]
dbj|BAB80286.1| (AP003187) probable iron-sulfur binding reductase [Clostridium
perfringens]
Length = 376
Score = 44.3 bits (103), Expect = 0.003
Identities = 28/104 (26%), Positives = 45/104 (42%), Gaps = 19/104 (18%)
Query: 314 CIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEV 373
C+ CG C CP+ + G P ++ ++ Y I C LC CTE
Sbjct: 19 CVNCGLCYKVCPMMNTFG--------ESPKNILRDIDENKIS-YDEIAYSCMLCNACTES 69
Query: 374 CPVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQHSGMEKFSMKM 417
CP +I L E+ ++LR IK + + +KF++K+
Sbjct: 70 CPKDINLKEMFQNLR----------IKSYRENLKNTSKKFNLKV 103
>ref|NP_613419.1| (NC_003551) Succinate dehydrogenase/fumarate reductase Fe-S protein
[Methanopyrus kandleri AV19]
gb|AAM01349.1| (AE010313) Succinate dehydrogenase/fumarate reductase Fe-S protein
[Methanopyrus kandleri AV19]
Length = 492
Score = 43.5 bits (101), Expect = 0.006
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 307 KYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNL--- 363
K Y SCI C C+ CPV K G + PGPI V+ + P +
Sbjct: 130 KLYELRSCIECLCCVAECPVI-KAGS----ARNPGPI--VLRKVAEEAEKWDESPEIDDS 182
Query: 364 ---CSLCGRCTEVCP--VEIPLAELIRDLRSDKVGEGRG 397
C+ C C EVCP +EIP A+ + +R+ EG+G
Sbjct: 183 VYACTTCHTCAEVCPKDIEIP-AKAVETVRARLYEEGKG 220
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,199,395
Number of Sequences: 1026957
Number of extensions: 13520298
Number of successful extensions: 40136
Number of sequences better than 1.0e-02: 38
Number of HSP's better than 0.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 39980
Number of HSP's gapped (non-prelim): 44
length of query: 481
length of database: 324,149,939
effective HSP length: 125
effective length of query: 356
effective length of database: 195,780,314
effective search space: 69697791784
effective search space used: 69697791784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 99 (42.7 bits)