BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645987|ref|NP_208168.1| hypothetical protein
[Helicobacter pylori 26695]
(146 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208168.1| (NC_000915) hypothetical protein [Helicoba... 289 3e-78
ref|NP_224009.1| (NC_000921) putative [Helicobacter pylori ... 248 1e-65
ref|NP_282223.1| (NC_002163) hypothetical protein Cj1075 [C... 100 4e-21
ref|NP_207945.1| (NC_000915) hypothetical protein [Helicoba... 98 1e-20
ref|NP_223798.1| (NC_000921) putative [Helicobacter pylori ... 98 2e-20
ref|NP_391418.1| (NC_000964) similar to hypothetical protei... 55 1e-07
ref|NP_622173.1| (NC_003869) conserved hypothetical protein... 54 3e-07
ref|NP_348827.1| (NC_003030) Uncharacterized protein, YVIF ... 52 1e-06
ref|NP_244485.1| (NC_002570) BH3618~unknown conserved prote... 48 2e-05
ref|NP_219095.1| (NC_000919) transmembrane protein, putativ... 41 0.002
ref|NP_227897.1| (NC_000853) conserved hypothetical protein... 39 0.007
>ref|NP_208168.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64692 hypothetical protein HP1377 - Helicobacter pylori (strain 26695)
gb|AAD08427.1| (AE000638) H. pylori predicted coding region HP1377 [Helicobacter
pylori 26695]
Length = 146
Score = 289 bits (740), Expect = 3e-78
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MSLRRRFCAFLKGMQSPMIFDVKAPILGFETIHKMRLQKIDEIFLRLNSTEENSVVSFTL 60
MSLRRRFCAFLKGMQSPMIFDVKAPILGFETIHKMRLQKIDEIFLRLNSTEENSVVSFTL
Sbjct: 1 MSLRRRFCAFLKGMQSPMIFDVKAPILGFETIHKMRLQKIDEIFLRLNSTEENSVVSFTL 60
Query: 61 VNPFALRKYEFEVPTPLKILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQL 120
VNPFALRKYEFEVPTPLKILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQL
Sbjct: 61 VNPFALRKYEFEVPTPLKILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQL 120
Query: 121 MGQVVLDSNKYPHYHLRENILSHTHE 146
MGQVVLDSNKYPHYHLRENILSHTHE
Sbjct: 121 MGQVVLDSNKYPHYHLRENILSHTHE 146
>ref|NP_224009.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71824 hypothetical protein jhp1291 - Helicobacter pylori (strain J99)
gb|AAD06873.1| (AE001552) putative [Helicobacter pylori J99]
Length = 129
Score = 248 bits (632), Expect = 1e-65
Identities = 125/129 (96%), Positives = 126/129 (96%)
Query: 18 MIFDVKAPILGFETIHKMRLQKIDEIFLRLNSTEENSVVSFTLVNPFALRKYEFEVPTPL 77
MIFDVKAPILGFETIHKM LQKIDEIFLRLNS E+NSVVSFTLVNPFALRKYEFEVPTPL
Sbjct: 1 MIFDVKAPILGFETIHKMHLQKIDEIFLRLNSAEDNSVVSFTLVNPFALRKYEFEVPTPL 60
Query: 78 KILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDSNKYPHYHLR 137
KILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDS KYPHYHLR
Sbjct: 61 KILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDSKKYPHYHLR 120
Query: 138 ENILSHTHE 146
ENILSHTHE
Sbjct: 121 ENILSHTHE 129
>ref|NP_282223.1| (NC_002163) hypothetical protein Cj1075 [Campylobacter jejuni]
pir||F81310 hypothetical protein Cj1075 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73330.1| (AL139077) hypothetical protein Cj1075 [Campylobacter jejuni]
Length = 129
Score = 99.8 bits (247), Expect = 4e-21
Identities = 53/127 (41%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 18 MIFDVKAPILGFETIHKMRLQKIDEIFLRLNSTEENSVVSFTLVNPFALRK-YEFEVPTP 76
M VK PILGFE M IDE+F+RL S + SF L+NP+ +R YEF++PT
Sbjct: 1 MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDF-SFVLINPYLIRPDYEFDIPTY 59
Query: 77 LKILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDSNKYPHYHL 136
+ LL L ++ + NI+ + IE STVN+LAP++ NLD M QV+LD+ YP +
Sbjct: 60 YQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNNTMVQVILDTVNYPDFFQ 119
Query: 137 RENILSH 143
+ I ++
Sbjct: 120 ADQIANY 126
>ref|NP_207945.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64664 hypothetical protein HP1154 - Helicobacter pylori (strain 26695)
gb|AAD08203.1| (AE000621) H. pylori predicted coding region HP1154 [Helicobacter
pylori 26695]
Length = 135
Score = 98.2 bits (243), Expect = 1e-20
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 1/126 (0%)
Query: 18 MIFDVKAPILGFETIHKMRLQKIDEIFLRLNS-TEENSVVSFTLVNPFALRKYEFEVPTP 76
M + +KAPILGFE I+++RL+KID +F RL S T + LVNP+ LR+Y F +P
Sbjct: 1 MNYFLKAPILGFEHINEVRLEKIDSLFSRLISQTNSPMALDMVLVNPYCLREYSFVIPKY 60
Query: 77 LKILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDSNKYPHYHL 136
+++LLEL+ V V ++V+Q +E S VN+LAPL+FN QV L YP +
Sbjct: 61 IELLLELDSHSKVEVYCVVVLQKNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDYPDFGF 120
Query: 137 RENILS 142
R+ + S
Sbjct: 121 RDPLKS 126
>ref|NP_223798.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71852 hypothetical protein jhp1081 - Helicobacter pylori (strain J99)
gb|AAD06651.1| (AE001535) putative [Helicobacter pylori J99]
Length = 135
Score = 97.8 bits (242), Expect = 2e-20
Identities = 53/126 (42%), Positives = 77/126 (61%), Gaps = 1/126 (0%)
Query: 18 MIFDVKAPILGFETIHKMRLQKIDEIFLRL-NSTEENSVVSFTLVNPFALRKYEFEVPTP 76
M + +KAPILGFE I+++RL+KID +F RL T + LVNP+ LR+Y F +P
Sbjct: 1 MNYFLKAPILGFEHINEVRLEKIDSLFSRLMGQTNSPMALDMVLVNPYCLREYSFVIPKY 60
Query: 77 LKILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDSNKYPHYHL 136
+++LLEL+ V V ++V+Q +E S VN+LAPL+FN QV L YP +
Sbjct: 61 IELLLELDSHSKVEVYCVVVLQKNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDYPDFGF 120
Query: 137 RENILS 142
R+ + S
Sbjct: 121 RDPLKS 126
>ref|NP_391418.1| (NC_000964) similar to hypothetical proteins from B. subtilis
[Bacillus subtilis]
pir||C70042 conserved hypothetical protein yviF - Bacillus subtilis
gb|AAC44949.1| (U56901) transmembrane protein [Bacillus subtilis]
emb|CAB15555.1| (Z99122) similar to hypothetical proteins from B. subtilis
[Bacillus subtilis]
Length = 143
Score = 55.5 bits (132), Expect = 1e-07
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 41 DEIFLRLNS-TEENSVVSFTLVNPFALRK-YEFEVPTPLKILLELEGAKSVLVANIMVVQ 98
D F+ L S T EN ++F +V+PF K YEF++ LL+++ + V V I+ +
Sbjct: 42 DSPFVALQSVTSEN--LAFIVVSPFIFFKNYEFDLDESTAELLDIDNIQDVEVMTILTMA 99
Query: 99 TPIELSTVNYLAPLIFNLDKQLMGQVVLDSNKYPHYH 135
P E ST N LAP+I N + QVVL + Y H
Sbjct: 100 EPFEKSTANLLAPIIVNRKNMMAKQVVLHDSSYTTKH 136
>ref|NP_622173.1| (NC_003869) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
gb|AAM23777.1| (AE013020) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
Length = 150
Score = 53.9 bits (128), Expect = 3e-07
Identities = 35/110 (31%), Positives = 58/110 (51%), Gaps = 5/110 (4%)
Query: 26 ILGFETIHKMRL---QKIDEIFLRLNSTEENSVVSFTLVNPFALRK-YEFEVPTPLKILL 81
I GFE +H + ++ D F L S + N ++F +++P + Y FE+ LK L
Sbjct: 25 IPGFEELHNFLIIGDEEEDMPFKWLQSID-NPDIAFVVIDPRVFKPDYTFEIDEELKNFL 83
Query: 82 ELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDSNKY 131
+E +L+ I+V+ IE T N AP+I N + Q++LD++KY
Sbjct: 84 AVEDVNHLLIFVIVVIPEKIEEMTANLKAPIIINAENNRGVQIILDNDKY 133
>ref|NP_348827.1| (NC_003030) Uncharacterized protein, YVIF B.subtilis homolog
[Clostridium acetobutylicum]
gb|AAK80167.1|AE007721_7 (AE007721) Uncharacterized protein, YVIF B.subtilis homolog
[Clostridium acetobutylicum]
Length = 141
Score = 51.6 bits (122), Expect = 1e-06
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 1 MSLRRRFCAFLKGMQSPMIFDVKAPILGFETIHKMRLQKID--EIFLRLNSTEENSVVSF 58
M L ++ ++ ++ +I VK + GFE + K L I+ E+F +S E+ +F
Sbjct: 1 MKLETQYHGIIEYNENNIINLVKG-MSGFENLKKFILVGIENNEVFSLFHSMEDKET-AF 58
Query: 59 TLVNPFALRK-YEFEVPTPLKILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLD 117
+ +PF ++ YE + L L+++ K VL+ N + + I+ T N AP+I N++
Sbjct: 59 IVSSPFYVKADYEVNLSEELVKELKIDSEKDVLIINTVNLSKDIKKMTTNLGAPIIININ 118
Query: 118 KQLMGQVVLDSN----KYPHYH 135
K L Q+++ + KYP H
Sbjct: 119 KHLGKQIIISDDEKMIKYPMIH 140
>ref|NP_244485.1| (NC_002570) BH3618~unknown conserved protein in B. subtilis
[Bacillus halodurans]
dbj|BAB07337.1| (AP001519) BH3618~unknown conserved protein in B. subtilis
[Bacillus halodurans]
Length = 151
Score = 47.8 bits (112), Expect = 2e-05
Identities = 23/77 (29%), Positives = 43/77 (54%), Gaps = 1/77 (1%)
Query: 56 VSFTLVNPFAL-RKYEFEVPTPLKILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIF 114
++F +VNPF+ +Y ++P + L + V + +++ V+ P +TVN AP++
Sbjct: 57 LAFIIVNPFSFFPEYRVKLPEATIVQLNITNENDVAIFSLLTVKEPFSETTVNLQAPIVI 116
Query: 115 NLDKQLMGQVVLDSNKY 131
N +KQ+ Q+VL Y
Sbjct: 117 NANKQMGKQLVLGDTAY 133
>ref|NP_219095.1| (NC_000919) transmembrane protein, putative [Treponema pallidum]
pir||C71297 probable transmembrane protein - syphilis spirochete
gb|AAC65632.1| (AE001240) transmembrane protein, putative [Treponema pallidum]
Length = 150
Score = 41.2 bits (95), Expect = 0.002
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 14 MQSPMIFDVKAPILGFETIHKMRLQKIDEI-FLRLNSTEENSVVSFTLVNPFALRK-YEF 71
+++ I ++ + GFE H+ L ++ F+ + S ++ ++ SF ++PF R YE
Sbjct: 13 VEAHQIITLERGLYGFEKYHRFALFDAVQVPFIHMQSLDDPAL-SFIAIDPFLFRPDYEL 71
Query: 72 EVPTPLKILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDSNKY 131
++ L L++ VLV ++ + T N PLI N + QV + +++
Sbjct: 72 DIDDVLLQPLDISSPTDVLVFALVTIPPDGSAVTANLQGPLIVNKKNRKAMQVAMGGDRW 131
Query: 132 PHYH 135
H
Sbjct: 132 RTKH 135
>ref|NP_227897.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||C72419 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35175.1|AE001695_1 (AE001695) conserved hypothetical protein [Thermotoga maritima]
Length = 149
Score = 39.3 bits (90), Expect = 0.007
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 19 IFDVKAPILGFETIHKMRLQKIDEIF-LRLNSTEENSVVSFTLVNPFALRKYEFEVPTPL 77
IF + I GFE + K L E F + + E+S V +V+P +R +++ P
Sbjct: 17 IFTFEKGIPGFEHLRKFALVFPQETFPIGWLLSLEDSEVGLPVVDPKLVRA-DYDPAVPS 75
Query: 78 KILLELEGAKSVLVANIMVVQTPI---ELSTVNYLAPLIFNLDKQLMGQVVLDSNKYPHY 134
+ L E+E + V+ P E +T+N AP+I N K+ Q +L++ Y
Sbjct: 76 EDLEEIEAENQEALLFFCVLTIPPGKPEKTTINLRAPIILNQKKKKGIQTILENEDYQLR 135
Query: 135 HL 136
HL
Sbjct: 136 HL 137
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.140 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,256,351
Number of Sequences: 1026957
Number of extensions: 2937466
Number of successful extensions: 8029
Number of sequences better than 1.0e-02: 11
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8016
Number of HSP's gapped (non-prelim): 12
length of query: 146
length of database: 324,149,939
effective HSP length: 122
effective length of query: 24
effective length of database: 198,861,185
effective search space: 4772668440
effective search space used: 4772668440
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 89 (38.9 bits)