BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645991|ref|NP_208172.1| hypothetical protein
[Helicobacter pylori 26695]
         (77 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208172.1|  (NC_000915) hypothetical protein [Helicoba...   157  2e-38

>ref|NP_208172.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64692 hypothetical protein HP1381 - Helicobacter pylori (strain 26695)
 gb|AAD08428.1| (AE000638) H. pylori predicted coding region HP1381 [Helicobacter
          pylori 26695]
          Length = 77

 Score =  157 bits (398), Expect = 2e-38
 Identities = 77/77 (100%), Positives = 77/77 (100%)

Query: 1  MRGAKWGIWIVFMDYRLFHMDSMDLPSNQQTTIRDYLKPGSIVVFAIIVIIISSHFSNAY 60
          MRGAKWGIWIVFMDYRLFHMDSMDLPSNQQTTIRDYLKPGSIVVFAIIVIIISSHFSNAY
Sbjct: 1  MRGAKWGIWIVFMDYRLFHMDSMDLPSNQQTTIRDYLKPGSIVVFAIIVIIISSHFSNAY 60

Query: 61 KTLIASNKKPVLSHLEI 77
          KTLIASNKKPVLSHLEI
Sbjct: 61 KTLIASNKKPVLSHLEI 77



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.327    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,603,491
Number of Sequences: 1026957
Number of extensions: 1383657
Number of successful extensions: 9084
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9083
Number of HSP's gapped (non-prelim): 1
length of query: 77
length of database: 324,149,939
effective HSP length: 53
effective length of query: 24
effective length of database: 269,721,218
effective search space: 6473309232
effective search space used: 6473309232
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 90 (39.3 bits)