BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645992|ref|NP_208173.1| hypothetical protein
[Helicobacter pylori 26695]
         (130 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208173.1|  (NC_000915) hypothetical protein [Helicoba...   272  5e-73
ref|NP_224013.1|  (NC_000921) putative ENDONUCLEASE [Helicob...   263  2e-70

>ref|NP_208173.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64692 hypothetical protein HP1382 - Helicobacter pylori (strain 26695)
 gb|AAD08429.1| (AE000638) H. pylori predicted coding region HP1382 [Helicobacter
           pylori 26695]
          Length = 130

 Score =  272 bits (695), Expect = 5e-73
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MTNITPEAKNTNRHSVLLVEKEGRNLARKYHQVLVEELTIIKQGYKTFSSKNIAIPSGFW 60
           MTNITPEAKNTNRHSVLLVEKEGRNLARKYHQVLVEELTIIKQGYKTFSSKNIAIPSGFW
Sbjct: 1   MTNITPEAKNTNRHSVLLVEKEGRNLARKYHQVLVEELTIIKQGYKTFSSKNIAIPSGFW 60

Query: 61  YHYDTSLTDSYENAKSECFYIPNDNQNYPLQEMRRDCKEYERVEKQVVFKNNKNNELNEL 120
           YHYDTSLTDSYENAKSECFYIPNDNQNYPLQEMRRDCKEYERVEKQVVFKNNKNNELNEL
Sbjct: 61  YHYDTSLTDSYENAKSECFYIPNDNQNYPLQEMRRDCKEYERVEKQVVFKNNKNNELNEL 120

Query: 121 PKYLNNAKKY 130
           PKYLNNAKKY
Sbjct: 121 PKYLNNAKKY 130



>ref|NP_224013.1| (NC_000921) putative ENDONUCLEASE [Helicobacter pylori J99]
 pir||C71825 probable endonuclease - Helicobacter pylori (strain J99)
 gb|AAD06872.1| (AE001552) putative ENDONUCLEASE [Helicobacter pylori J99]
          Length = 287

 Score =  263 bits (673), Expect = 2e-70
 Identities = 125/130 (96%), Positives = 128/130 (98%)

Query: 1   MTNITPEAKNTNRHSVLLVEKEGRNLARKYHQVLVEELTIIKQGYKTFSSKNIAIPSGFW 60
           MTNITPEAKNTNRHSVLLVEKEGRNLARKYHQVLVEELTIIKQGY+TFSSKNIAIPSGFW
Sbjct: 158 MTNITPEAKNTNRHSVLLVEKEGRNLARKYHQVLVEELTIIKQGYRTFSSKNIAIPSGFW 217

Query: 61  YHYDTSLTDSYENAKSECFYIPNDNQNYPLQEMRRDCKEYERVEKQVVFKNNKNNELNEL 120
           YHYDTSLTDSYENAKSECFYIPNDNQ YPLQEMRRDCKEYERVEKQVVFKNNKN ELNEL
Sbjct: 218 YHYDTSLTDSYENAKSECFYIPNDNQKYPLQEMRRDCKEYERVEKQVVFKNNKNAELNEL 277

Query: 121 PKYLNNAKKY 130
           PKY+NN+KKY
Sbjct: 278 PKYMNNSKKY 287



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.312    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,074,222
Number of Sequences: 1026957
Number of extensions: 3454845
Number of successful extensions: 7795
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7793
Number of HSP's gapped (non-prelim): 2
length of query: 130
length of database: 324,149,939
effective HSP length: 106
effective length of query: 24
effective length of database: 215,292,497
effective search space: 5167019928
effective search space used: 5167019928
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 90 (39.3 bits)