BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644769|ref|NP_206939.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(242 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206939.1| (NC_000915) conserved hypothetical secrete... 490 e-138
ref|NP_222848.1| (NC_000921) putative [Helicobacter pylori ... 486 e-137
ref|NP_281288.1| (NC_002163) putative oxidoreductase iron-s... 315 2e-85
ref|NP_242698.1| (NC_002570) glycolate oxidase [Bacillus ha... 190 1e-47
ref|NP_274448.1| (NC_003112) conserved hypothetical protein... 178 5e-44
ref|NP_284364.1| (NC_003116) conserved hypothetical protein... 178 5e-44
ref|NP_391285.1| (NC_000964) similar to glycolate oxidase [... 168 4e-41
ref|NP_657136.1| (NC_003995) DUF224, Domain of unknown func... 167 9e-41
ref|NP_625115.1| (NC_003888) conserved hypothetical protein... 164 6e-40
ref|NP_295630.1| (NC_001263) fumarate reductase-related pro... 162 4e-39
ref|NP_286032.1| (NC_002655) putative dehydrogenase subunit... 158 6e-38
ref|NP_414840.1| (NC_000913) putative dehydrogenase subunit... 157 1e-37
ref|NP_267889.1| (NC_002662) oxidoreductase [Lactococcus la... 157 1e-37
ref|NP_246792.1| (NC_002663) unknown [Pasteurella multocida... 155 4e-37
ref|NP_519732.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 155 4e-37
ref|NP_655201.1| (NC_003995) DUF224, Domain of unknown func... 154 8e-37
ref|NP_602367.1| (NC_003454) Iron-sulfur cluster-binding pr... 122 3e-27
gb|AAL87783.1|AF403184_8 (AF403184) unknown [Desulfitobacte... 122 4e-27
ref|NP_295453.1| (NC_001263) glycolate oxidase, iron-sulfur... 120 1e-26
ref|NP_214123.1| (NC_000918) oxido/reductase iron sulfur pr... 117 1e-25
ref|NP_243001.1| (NC_002570) glycolate oxidase iron-sulfur ... 100 1e-20
ref|NP_484667.1| (NC_003272) glycolate oxidase subunit (Fe-... 97 2e-19
ref|NP_390747.1| (NC_000964) similar to glycolate oxidase s... 97 2e-19
ref|NP_243595.1| (NC_002570) glycolate oxidase subunit [Bac... 97 2e-19
ref|NP_613419.1| (NC_003551) Succinate dehydrogenase/fumara... 92 4e-18
emb|CAA04399.1| (AJ000942) Thiol:fumarate reductase subunit... 91 1e-17
ref|NP_247056.1| (NC_000909) heterodisulfide reductase, sub... 91 1e-17
ref|NP_223329.1| (NC_000921) glycerol-3-phosphate dehydroge... 91 1e-17
ref|NP_282141.1| (NC_002163) putative oxidoreductase ferred... 90 2e-17
ref|NP_276956.1| (NC_000916) fumarate reductase [Methanothe... 89 4e-17
ref|NP_655194.1| (NC_003995) DUF224, Domain of unknown func... 89 4e-17
ref|NP_207460.1| (NC_000915) anaerobic glycerol-3-phosphate... 88 7e-17
ref|NP_440465.1| (NC_000911) glycolate oxidase subunit (Fe-... 81 9e-15
ref|NP_633314.1| (NC_003901) Fe-S oxidoreductase [Methanosa... 77 1e-13
emb|CAA04339.1| (AJ000861) fumarate reductase [Campylobacte... 77 1e-13
ref|NP_542039.1| (NC_003318) (S)-2-HYDROXY-ACID OXIDASE SUB... 73 2e-12
ref|NP_233135.1| (NC_002506) anaerobic glycerol-3-phosphate... 73 3e-12
ref|NP_353690.1| (NC_003062) AGR_C_1194p [Agrobacterium tum... 73 3e-12
ref|NP_384885.1| (NC_003047) PROBABLE GLYCOLATE OXIDASE IRO... 72 4e-12
ref|NP_619484.1| (NC_003552) iron-sulfur binding reductase ... 72 7e-12
ref|NP_407272.1| (NC_003143) anaerobic glycerol-3-phosphate... 70 3e-11
ref|NP_069342.1| (NC_000917) iron-sulfur binding reductase ... 69 6e-11
ref|NP_615490.1| (NC_003552) heterodisulfide reductase, sub... 65 5e-10
ref|NP_461228.1| (NC_003197) sn-glycerol-3-phosphate dehydr... 65 6e-10
ref|NP_107327.1| (NC_002678) glycolate oxidase subunit, (Fe... 65 6e-10
ref|NP_456829.1| (NC_003198) anaerobic glycerol-3-phosphate... 65 6e-10
ref|NP_615648.1| (NC_003552) heterodisulfide reductase, sub... 64 1e-09
ref|NP_288819.1| (NC_002655) sn-glycerol-3-phosphate dehydr... 63 2e-09
ref|NP_378370.1| (NC_003106) 396aa long hypothetical anaero... 62 5e-09
emb|CAA70997.1| (Y09870) heterodisulfide reductase [Methano... 61 9e-09
ref|NP_633710.1| (NC_003901) Iron-sulfur binding reductase ... 61 1e-08
ref|NP_438843.1| (NC_000907) anaerobic glycerol-3-phosphate... 60 2e-08
ref|NP_619272.1| (NC_003552) hypothetical protein (multi-do... 60 2e-08
ref|NP_518575.1| (NC_003295) PUTATIVE OXIDOREDUCTASE PROTEI... 60 2e-08
gb|AAA83866.1| (M20938) glycerol-3-phosphate dehydrogenase ... 60 2e-08
ref|NP_520789.1| (NC_003295) PROBABLE GLYCOLATE OXIDASE (IR... 57 2e-07
ref|NP_633868.1| (NC_003901) Heterodisulfide reductase, sub... 56 3e-07
ref|NP_417452.1| (NC_000913) glycolate oxidase iron-sulfur ... 55 5e-07
sp|P52074|GLCF_ECOLI Glycolate oxidase iron-sulfur subunit ... 55 5e-07
ref|NP_254040.1| (NC_002516) glycolate oxidase subunit GlcF... 54 1e-06
ref|NP_246379.1| (NC_002663) GlpC [Pasteurella multocida] >... 53 3e-06
ref|NP_613857.1| (NC_003551) Heterodisulfide reductase, sub... 52 4e-06
ref|NP_559191.1| (NC_003364) glycolate oxidase subunit glcF... 52 6e-06
ref|NP_343974.1| (NC_002754) Glycerol-3-phosphate dehydroge... 51 1e-05
ref|NP_344471.1| (NC_002754) Glycolate oxidase iron-sulfur ... 51 1e-05
ref|NP_282713.1| (NC_002163) putative oxidoreductase [Campy... 51 1e-05
ref|NP_378296.1| (NC_003106) 325aa long hypothetical protei... 51 1e-05
pir||S78509 heterodisulfide reductase (EC 1.97.1.-) chain B... 49 5e-05
ref|NP_561496.1| (NC_003366) probable iron-sulfur binding r... 48 1e-04
ref|NP_662030.1| (NC_002932) oxidoreductase, FAD-binding [C... 47 2e-04
ref|NP_276985.1| (NC_000916) heterodisulfide reductase, sub... 46 3e-04
ref|NP_283972.1| (NC_003116) putative oxidoreductase [Neiss... 45 5e-04
ref|NP_274034.1| (NC_003112) oxidoreductase, putative [Neis... 45 7e-04
ref|NP_070822.1| (NC_000917) iron-sulfur binding reductase ... 45 9e-04
ref|NP_280668.1| (NC_002607) glycerol-3-phosphate dehydroge... 45 9e-04
ref|NP_223861.1| (NC_000921) D-LACTATE DEHYDROGENASE [Helic... 42 0.006
ref|NP_391599.1| (NC_000964) similar to hypothetical protei... 42 0.006
ref|NP_663020.1| (NC_002932) iron-sulfur cluster-binding pr... 42 0.008
>ref|NP_206939.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||C64537 conserved hypothetical secreted protein HP0139 - Helicobacter
pylori (strain 26695)
gb|AAD07207.1| (AE000535) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 242
Score = 490 bits (1262), Expect = e-138
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL
Sbjct: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
Query: 61 YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQ 120
YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQ
Sbjct: 61 YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQ 120
Query: 121 VKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSV 180
VKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSV
Sbjct: 121 VKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSV 180
Query: 181 KEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLASRL 240
KEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLASRL
Sbjct: 181 KEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLASRL 240
Query: 241 GL 242
GL
Sbjct: 241 GL 242
>ref|NP_222848.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71972 hypothetical protein jhp0127 - Helicobacter pylori (strain J99)
gb|AAD05704.1| (AE001451) putative [Helicobacter pylori J99]
Length = 242
Score = 486 bits (1252), Expect = e-137
Identities = 240/242 (99%), Positives = 241/242 (99%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL
Sbjct: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
Query: 61 YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQ 120
YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQ
Sbjct: 61 YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQ 120
Query: 121 VKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSV 180
VKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSV
Sbjct: 121 VKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSV 180
Query: 181 KEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLASRL 240
KEPEISAVMVKEKIK+IESR VDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLASRL
Sbjct: 181 KEPEISAVMVKEKIKDIESRHVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLASRL 240
Query: 241 GL 242
GL
Sbjct: 241 GL 242
>ref|NP_281288.1| (NC_002163) putative oxidoreductase iron-sulfur subunit
[Campylobacter jejuni]
pir||E81423 probable oxidoreductase iron-sulfur chain Cj0075c [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB72561.1| (AL139074) putative oxidoreductase iron-sulfur subunit
[Campylobacter jejuni]
Length = 246
Score = 315 bits (808), Expect = 2e-85
Identities = 145/239 (60%), Positives = 189/239 (78%), Gaps = 1/239 (0%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
KV F+ATCLG+ + LNAIKLLR+E +EV+FKK+QTCC QPS+NSGY++E++++ LY
Sbjct: 4 KVYFYATCLGSTAMQQSVLNAIKLLRREGIEVIFKKNQTCCAQPSFNSGYFDESREIALY 63
Query: 62 NIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQV 121
N+ L+ + DYPI++PSGSC GMM HDY ELF+ EF+ +K F SRV ELS++LD+ L+V
Sbjct: 64 NVDLF-DKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKIKTFSSRVIELSQYLDEVLKV 122
Query: 122 KYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSVK 181
YEDKG P+K+TWHSNCHALRV K I ++KNLI++LKNVEL+EL+ EEECCGFGGTFSVK
Sbjct: 123 DYEDKGVPIKVTWHSNCHALRVQKSIQASKNLIKKLKNVELVELQYEEECCGFGGTFSVK 182
Query: 182 EPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLASRL 240
EPEIS MV+ KIK+I++ ++S D GCL+NI M++MG K +H YDFL RL
Sbjct: 183 EPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNIDGTMKRMGLDIKGIHLYDFLLKRL 241
>ref|NP_242698.1| (NC_002570) glycolate oxidase [Bacillus halodurans]
dbj|BAB05551.1| (AP001513) glycolate oxidase [Bacillus halodurans]
Length = 244
Score = 190 bits (482), Expect = 1e-47
Identities = 98/237 (41%), Positives = 141/237 (59%), Gaps = 3/237 (1%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
MKV+ F TCL Y + + ++LL + EV F + QTCCGQP+YNSGY+ +TKKV
Sbjct: 1 MKVSLFITCLADVFYPDVGRHTVELLERYGCEVEFPEQQTCCGQPAYNSGYHRDTKKVAK 60
Query: 61 YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFN-MVKDFCSRVYELSEFLDKKL 119
+ I+ ++ +Y ++ PSGSC M H+Y EL + + K ++ YELS+FL L
Sbjct: 61 HMIETFARAEY-VVSPSGSCVAMF-HEYEELLKDEPVWQERAKKLVAKTYELSQFLVNVL 118
Query: 120 QVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFS 179
+VK K T+H++CH R+ S +L+ +++ ++L EL E CCGFGGTFS
Sbjct: 119 KVKEVHSSLQAKATYHTSCHMTRLLGETQSPFDLLEKVEGLQLEELPNRETCCGFGGTFS 178
Query: 180 VKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFL 236
VK IS MV EK+++IE DV++ AD GCLMNI +Q+ G K MH + L
Sbjct: 179 VKMTPISEQMVDEKVRHIEETGADVLIGADCGCLMNIGGRIQRKGKPIKMMHLAEVL 235
>ref|NP_274448.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||D81083 conserved hypothetical protein NMB1436 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41797.1| (AE002493) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 259
Score = 178 bits (451), Expect = 5e-44
Identities = 98/240 (40%), Positives = 137/240 (56%), Gaps = 3/240 (1%)
Query: 3 VNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYN 62
V FF TC+ A ++AI L+ ++ + V F Q+CCGQP+Y+SG+ E V
Sbjct: 19 VYFFGTCVLDLFMPEAGMDAITLIEQQGIRVHFPMAQSCCGQPAYSSGHPTEAFDVAKAQ 78
Query: 63 IKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQVK 122
+ L+ N +PI++PSGSC GMM+H + LF+G D R+ E + FL + K
Sbjct: 79 LDLFPEN-WPIVVPSGSCGGMMKHHWPTLFKGSEYEERAVDCAGRIIEFTHFL-LAIGFK 136
Query: 123 YEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSVKE 182
EDKGEPLK+ H++C A R V S LI ++NVE I + E ECCGFGGTFSVK+
Sbjct: 137 PEDKGEPLKVAVHTSCAARREMNVHLSGWQLIDGMENVERIVHDHESECCGFGGTFSVKQ 196
Query: 183 PEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQK-MGSLTKPMHFYDFLASRLG 241
+IS MV +K+ ++ I+SAD GC+MNI + K + +P H FL R G
Sbjct: 197 ADISGAMVTDKVAALKETGATEIISADCGCMMNIGGKIAKDEPDMPRPKHIASFLLERTG 256
>ref|NP_284364.1| (NC_003116) conserved hypothetical protein [Neisseria meningitidis
Z2491]
pir||D81859 conserved hypothetical protein NMA1648 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB84876.1| (AL162756) conserved hypothetical protein [Neisseria meningitidis
Z2491]
Length = 259
Score = 178 bits (451), Expect = 5e-44
Identities = 98/240 (40%), Positives = 137/240 (56%), Gaps = 3/240 (1%)
Query: 3 VNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYN 62
V FF TC+ A ++AI L+ ++ + V F Q+CCGQP+Y+SG+ E V
Sbjct: 19 VYFFGTCVLDLFMPEAGMDAIALIEQQGIRVHFPMAQSCCGQPAYSSGHPTEAFDVAKAQ 78
Query: 63 IKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQVK 122
+ L+ N +PI++PSGSC GMM+H + LF+G D R+ E + FL + K
Sbjct: 79 LDLFPEN-WPIVVPSGSCGGMMKHHWPTLFKGSEYEERAVDCAGRIIEFTHFL-LAIGFK 136
Query: 123 YEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSVKE 182
EDKGEPLK+ H++C A R V S LI ++NVE I + E ECCGFGGTFSVK+
Sbjct: 137 PEDKGEPLKVAVHTSCAARREMNVHLSGWQLIDGMENVERIVHDHESECCGFGGTFSVKQ 196
Query: 183 PEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQK-MGSLTKPMHFYDFLASRLG 241
+IS MV +K+ ++ I+SAD GC+MNI + K + +P H FL R G
Sbjct: 197 ADISGAMVTDKVAALKETGATEIISADCGCMMNIGGKIAKDEPDMPRPKHIASFLLERTG 256
>ref|NP_391285.1| (NC_000964) similar to glycolate oxidase [Bacillus subtilis]
pir||E70039 glycolate oxidase homolog yvfV - Bacillus subtilis
emb|CAB07992.1| (Z94043) hypothetical protein [Bacillus subtilis]
emb|CAB15410.1| (Z99121) similar to glycolate oxidase [Bacillus subtilis]
Length = 238
Score = 168 bits (426), Expect = 4e-41
Identities = 94/242 (38%), Positives = 137/242 (55%), Gaps = 7/242 (2%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
MKV+ F TCL +N ++LL + EV F + Q CCGQP+YNSGY + KK +
Sbjct: 1 MKVSLFVTCLVDMFQTNVGKATVELLERLGCEVDFPEGQICCGQPAYNSGYVHDAKKAMK 60
Query: 61 YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEF-NMVKDFCSRVYELSEFLDKKL 119
I+ + +++Y ++ PSGSCT M R +Y LF+ ++ + K + YEL++F+ L
Sbjct: 61 RMIETFQDSEY-VVSPSGSCTTMFR-EYPHLFQDDPKWADKAKKLADKTYELTDFIVNVL 118
Query: 120 QVKYEDKGEPL--KITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGT 177
V ED G L K T H++CH R+ V L+ +K ++ EL + CCGFGGT
Sbjct: 119 GV--EDVGATLHTKATLHTSCHMTRLLGVRKEPMKLLSHVKGLQFTELPGKHNCCGFGGT 176
Query: 178 FSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLA 237
FSVK +IS MV EK++ +E +V++ AD GCLMNI + + K MH + L
Sbjct: 177 FSVKMAQISEQMVDEKVECVEETGAEVLIGADCGCLMNIGGRLGRKDKNVKVMHIAEVLN 236
Query: 238 SR 239
SR
Sbjct: 237 SR 238
>ref|NP_657136.1| (NC_003995) DUF224, Domain of unknown function (DUF224) [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 242
Score = 167 bits (423), Expect = 9e-41
Identities = 85/241 (35%), Positives = 137/241 (56%), Gaps = 2/241 (0%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
MKV+ F TCL + + ++++ + +E+ F + QTCCGQP+YNSGY E+ K
Sbjct: 1 MKVSLFITCLSDVFFPQVGKSVVEIMNQCGVELDFPEGQTCCGQPAYNSGYQEDAKLAAK 60
Query: 61 YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAE-FNMVKDFCSRVYELSEFLDKKL 119
IK + +++Y I+ PSGSC M+ H Y E+F+G +E + R YEL++F+ L
Sbjct: 61 QMIKAFEHSEY-IVTPSGSCASMVHHYYKEMFKGDSEWYEKAVHLADRTYELTDFVVNIL 119
Query: 120 QVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFS 179
K +H +C R + + L+ Q++ +++ EL ++CCGFGGTF+
Sbjct: 120 GKNDWKSKLVEKAVFHQSCXMSRALGIKEEPLKLLSQVEGLDIKELPYCQDCCGFGGTFA 179
Query: 180 VKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLASR 239
VK IS MV EKIK+IE+ + ++++ AD GCLMNI +++ + +H + LA
Sbjct: 180 VKMSSISETMVDEKIKHIEATEANLLIGADMGCLMNIGGRLRRENKNIQVLHVAEVLAKG 239
Query: 240 L 240
L
Sbjct: 240 L 240
>ref|NP_625115.1| (NC_003888) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
pir||T36428 hypothetical protein SCF43A.05 - Streptomyces coelicolor
emb|CAB48892.1| (AL096837) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
Length = 250
Score = 164 bits (416), Expect = 6e-40
Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 8/245 (3%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
M+V F TC+ +Y ++LL + +EV F QTCCGQ YN+GY +E + +
Sbjct: 1 MRVALFLTCVNDTLYPETGRAVVRLLTRLGVEVDFPMAQTCCGQAHYNTGYRQEAEPLAR 60
Query: 61 YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFE-------GHAEFNMVKDFCSRVYELSE 113
+ +++ D I+ PSGSC M+R Y + E G ++ + YEL+E
Sbjct: 61 HFADVFAGYD-AIVTPSGSCGAMVRELYPRMGERARAEGRGDTLATVLAPVVPKTYELTE 119
Query: 114 FLDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCG 173
FL L V P +T+H CH LR + D + L+ +K +EL+EL EECCG
Sbjct: 120 FLVDVLGVTDVGAYYPHTVTYHPTCHGLRSLGLGDRPRRLLEAVKGLELVELPGAEECCG 179
Query: 174 FGGTFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFY 233
FGGTF+VK ++SA M +K++N ES DV+ +AD CLM+I M ++ + +P+H
Sbjct: 180 FGGTFAVKNSDVSAAMGTDKVRNAESTGADVLCAADNSCLMHIGGTMTRLRTGMRPVHIA 239
Query: 234 DFLAS 238
+ LAS
Sbjct: 240 EILAS 244
>ref|NP_295630.1| (NC_001263) fumarate reductase-related protein [Deinococcus
radiodurans]
pir||H75337 fumarate reductase-related protein - Deinococcus radiodurans
(strain R1)
gb|AAF11462.1|AE002030_1 (AE002030) fumarate reductase-related protein [Deinococcus
radiodurans]
Length = 247
Score = 162 bits (409), Expect = 4e-39
Identities = 84/244 (34%), Positives = 138/244 (56%), Gaps = 4/244 (1%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
M+++ F TC+ A++ +KLL + EV F QTCCGQ N+GY + +
Sbjct: 1 MQIDLFLTCVNDALFPGTGQATVKLLERLGHEVRFNPCQTCCGQMHLNTGYAGDALDLAR 60
Query: 61 YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKD---FCSRVYELSEFLDK 117
++ + +++ ++ PSGSC M+R Y E + + +++D RVYELSEFL
Sbjct: 61 KFVRDFRDSEV-VVTPSGSCAAMVRELYPEAAKWAGDEELLRDVEALAPRVYELSEFLVN 119
Query: 118 KLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGT 177
KL V P ++T+H CHA+R +V D+ L++ ++ + L+ELE ECCGFGGT
Sbjct: 120 KLGVTDVGAYYPHRVTYHPTCHAMRSLRVGDAPLKLLQNVRGMTLVELEGANECCGFGGT 179
Query: 178 FSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLA 237
F+VK P++SA M+ +K ++I + + D CL++I + ++ S T+ +H + LA
Sbjct: 180 FAVKNPDVSAAMLTDKARHIMDTGAEACTAGDNSCLLHIGGGLHRLRSGTRTVHLAEILA 239
Query: 238 SRLG 241
S G
Sbjct: 240 STEG 243
>ref|NP_286032.1| (NC_002655) putative dehydrogenase subunit [Escherichia coli
O157:H7 EDL933]
ref|NP_308371.1| (NC_002695) putative dehydrogenase subunit [Escherichia coli
O157:H7]
gb|AAG54640.1|AE005208_8 (AE005208) putative dehydrogenase subunit [Escherichia coli O157:H7
EDL933]
dbj|BAB33767.1| (AP002551) putative dehydrogenase subunit [Escherichia coli
O157:H7]
Length = 239
Score = 158 bits (399), Expect = 6e-38
Identities = 89/241 (36%), Positives = 134/241 (54%), Gaps = 4/241 (1%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
M VNFF TC+G A+ S + +++ LL K V F + Q CCGQP+ NSGY +E +
Sbjct: 1 MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQPAINSGYIKEAIPGMK 60
Query: 61 YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQ 120
I +ND PII P+GSCT ++ L + + + +R+ +L+ F+ KL
Sbjct: 61 NLIAALEDNDDPIISPAGSCTYAVKSYPTYLADEPEWASRAEKVAARMQDLTSFIVNKLG 120
Query: 121 VKYEDKGEPL--KITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTF 178
V D G L + +H +C R V D L++ ++ +EL+ +++ CCGFGGTF
Sbjct: 121 VV--DVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGLELLTFAEQDTCCGFGGTF 178
Query: 179 SVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLAS 238
SVK EIS MVKEK+ ++ + + ++ AD CL+NIS +Q+ G K MH + L S
Sbjct: 179 SVKMAEISGEMVKEKVAHLMEVRPEYLIGADVSCLLNISGRLQREGQKVKVMHIAEVLMS 238
Query: 239 R 239
R
Sbjct: 239 R 239
>ref|NP_414840.1| (NC_000913) putative dehydrogenase subunit [Escherichia coli K12]
sp|P77252|YKGE_ECOLI Hypothetical protein ykgE
pir||B64757 glycolate oxidase homolog ykgE - Escherichia coli
gb|AAB18033.1| (U73857) hypothetical protein [Escherichia coli]
gb|AAC73409.1| (AE000137) putative dehydrogenase subunit [Escherichia coli K12]
Length = 239
Score = 157 bits (397), Expect = 1e-37
Identities = 89/241 (36%), Positives = 133/241 (54%), Gaps = 4/241 (1%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
M VNFF TC+G A+ S + +++ LL K V F + Q CCGQP+ NSGY +E +
Sbjct: 1 MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQPAINSGYIKEAIPGMK 60
Query: 61 YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQ 120
I +ND PII P+GSCT ++ L + + +R+ +L+ F+ KL
Sbjct: 61 NLIAALEDNDDPIISPAGSCTYAVKSYPTYLADEPEWASRAAKVAARMQDLTSFIVNKLG 120
Query: 121 VKYEDKGEPL--KITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTF 178
V D G L + +H +C R V D L++ ++ +EL+ +++ CCGFGGTF
Sbjct: 121 VV--DVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGLELLTFAEQDTCCGFGGTF 178
Query: 179 SVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLAS 238
SVK EIS MVKEK+ ++ + + ++ AD CL+NIS +Q+ G K MH + L S
Sbjct: 179 SVKMAEISGEMVKEKVAHLMEVRPEYLIGADVSCLLNISGRLQREGQKVKVMHIAEVLMS 238
Query: 239 R 239
R
Sbjct: 239 R 239
>ref|NP_267889.1| (NC_002662) oxidoreductase [Lactococcus lactis subsp. lactis]
gb|AAK05831.1|AE006403_9 (AE006403) oxidoreductase [Lactococcus lactis subsp. lactis]
Length = 256
Score = 157 bits (396), Expect = 1e-37
Identities = 84/246 (34%), Positives = 142/246 (57%), Gaps = 8/246 (3%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
MKV+ F+TC+ ++ + +++L + +E ++Q CCGQP+YNSG +E+ +
Sbjct: 1 MKVSIFSTCVMDLMFPQVGIAMVEVLERLGIETDLPEEQICCGQPTYNSGLVKESMPTIK 60
Query: 61 YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVK-DFCSRVYELSEFLDKKL 119
I + ++DY + + +GSC+GM +Y +F+ + + D ++ YE ++FL + L
Sbjct: 61 NQIDAFESSDYVVGI-AGSCSGMFT-EYPHMFDENDPYKQKAIDLANKSYEFTQFLYRVL 118
Query: 120 QVKYEDKGEPL---KITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGG 176
+ ED G K T+H +CH R+ ++ L+ ++K +E++ L E CCGFGG
Sbjct: 119 GL--EDLGATFNGEKATYHRSCHMTRILGEREAPFILLDKVKGLEVLSLPHLENCCGFGG 176
Query: 177 TFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFL 236
TFSVK PEIS +MV EK +I S ++++SAD GCLMNI + + G + MH + L
Sbjct: 177 TFSVKSPEISEMMVTEKTNDILSTGAEILISADLGCLMNIGGKLNREGKKIRVMHIAEIL 236
Query: 237 ASRLGL 242
+ + L
Sbjct: 237 NTNVDL 242
>ref|NP_246792.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03937.1| (AE006223) unknown [Pasteurella multocida]
Length = 239
Score = 155 bits (392), Expect = 4e-37
Identities = 83/240 (34%), Positives = 133/240 (54%), Gaps = 2/240 (0%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
M VNF+ TC+G A+ SN + ++ LL + ++ F + Q CCGQP+ NSGY +
Sbjct: 1 MNVNFYVTCIGDALKSNVAKQSVLLLEQLGCKITFLEQQGCCGQPALNSGYVLSAIPGMK 60
Query: 61 YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNM-VKDFCSRVYELSEFLDKKL 119
I+ + NDYPI+ P+GSC ++ Y E + E+ + R Y+L++F+ +L
Sbjct: 61 KLIETFEVNDYPIVAPAGSCVYAIK-TYAEYLKEEPEWAARAQKVADRFYDLTDFIVNQL 119
Query: 120 QVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFS 179
+V +H +C R V + L++Q++ + L+ + +E CCGFGGTFS
Sbjct: 120 KVVNVGAKLAGNAVYHPSCSLFRKLGVKEEPVKLLQQVEGLNLLPIHNQETCCGFGGTFS 179
Query: 180 VKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLASR 239
VK EIS MVKEK+++I + + ++ AD CL+NI +++ G K MH + L SR
Sbjct: 180 VKMAEISGEMVKEKVQHIMAVKPLYLIGADVSCLLNIGGRLKREGHHVKVMHIAEVLMSR 239
>ref|NP_519732.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD15313.1| (AL646065) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 241
Score = 155 bits (392), Expect = 4e-37
Identities = 87/239 (36%), Positives = 126/239 (52%), Gaps = 3/239 (1%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
M+V F TCL + + + +KLL K EVV QTCCGQP+YNSG + +
Sbjct: 1 MRVGLFVTCLVDLMRPDIGFSVLKLLEKAGCEVVVPPAQTCCGQPAYNSGDRPLARDLAE 60
Query: 61 YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEF-NMVKDFCSRVYELSEFLDKKL 119
+K + DY +++PSGSC GM+R Y +LF E + RVYEL++FL
Sbjct: 61 KTLKEFEQFDY-VVVPSGSCGGMIRKHYADLFRDDPELAGRYERLAPRVYELTDFLVSVA 119
Query: 120 QVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFS 179
+ D +T+H C LR V ++L+ +L V L E+ E CCGFGGTFS
Sbjct: 120 GIASLDSAFQGHVTYHDACSGLRELGVKTQPRDLLAKLPGVRLTEMPACEACCGFGGTFS 179
Query: 180 VKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMG-SLTKPMHFYDFLA 237
+K +IS + EK NI + D +V D GC++NI +++ G + T+ +H LA
Sbjct: 180 IKYGDISTAIADEKCANIRASGADAVVLGDLGCMLNIEGRLRRTGDTQTRVLHIAQVLA 238
>ref|NP_655201.1| (NC_003995) DUF224, Domain of unknown function (DUF224) [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 239
Score = 154 bits (389), Expect = 8e-37
Identities = 83/240 (34%), Positives = 130/240 (53%), Gaps = 3/240 (1%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
MKV F TCL +N +++L + E+ F + Q CCGQP+YNSG+ E K+ +
Sbjct: 1 MKVTLFVTCLVDMFETNVGKATVEVLERLGCEIEFPEAQVCCGQPAYNSGHVEAAKEAMK 60
Query: 61 YNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEF-NMVKDFCSRVYELSEFLDKKL 119
+ I+ + + +Y I+ PSGSC M H+Y +F+ ++ + + YE ++F+ L
Sbjct: 61 HMIETFEDAEY-IVTPSGSCATMF-HEYPHVFKDDPKWAKRAQKVADKTYEFTQFIVDVL 118
Query: 120 QVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFS 179
+V P T H +CH R+ V ++ L+ +K + + EL + CCGFGGTFS
Sbjct: 119 KVTDVGASLPGIATIHKSCHMTRMLGVTEAPGILLSNVKGLTVRELPNVQNCCGFGGTFS 178
Query: 180 VKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLASR 239
VK IS MV EK+ + D ++ AD GCL+NI ++++G K MH + L SR
Sbjct: 179 VKMTPISEQMVDEKVDSAMETGADYLIGADCGCLLNIGGRIERLGKEIKVMHIAEVLNSR 238
>ref|NP_602367.1| (NC_003454) Iron-sulfur cluster-binding protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL93666.1| (AE010463) Iron-sulfur cluster-binding protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 719
Score = 122 bits (306), Expect = 3e-27
Identities = 77/250 (30%), Positives = 118/250 (46%), Gaps = 18/250 (7%)
Query: 3 VNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYN 62
V FA CL +Y++ + + + +V Q CCG P+ N G E +K N
Sbjct: 477 VAIFAGCLLDFVYTDLARAVVANMNSIGYKVEMPLGQACCGCPATNMGDTENARKEAEIN 536
Query: 63 IKLYSNNDYPIILPS-GSCTGMMRHDYLELFEGHAEFNM--------VKDFCSRVYELSE 113
I + Y ++ + SCT + H Y FE E + DFC YEL
Sbjct: 537 INGMESEKYDYVVSACPSCTHQL-HLYPTFFEEGTEMHKRAKELAEKTSDFCKLFYELGG 595
Query: 114 FLDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCG 173
+ G+P+K+T+H +CH R KV + L++ K VE +E+ + CCG
Sbjct: 596 MSET-------GDGKPMKVTYHDSCHLKRSLKVSKEQRELLKNTKGVEFVEMNDCDNCCG 648
Query: 174 FGGTFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMG-SLTKPMHF 232
FGG++S+ PEISA ++++KI+NI+ DV+ GCLM I + G K H
Sbjct: 649 FGGSYSLLYPEISAPILEKKIQNIKESGADVVALDCPGCLMQIKGGLDARGIDDIKVKHT 708
Query: 233 YDFLASRLGL 242
+ +A + GL
Sbjct: 709 AEIIAEKRGL 718
>gb|AAL87783.1|AF403184_8 (AF403184) unknown [Desulfitobacterium hafniense]
Length = 414
Score = 122 bits (305), Expect = 4e-27
Identities = 69/239 (28%), Positives = 113/239 (46%), Gaps = 3/239 (1%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
KV F+ C + + +K+L K + EVV K Q CCG P Y G +E K
Sbjct: 171 KVAFYVGCFLNYSLDQTAQSVVKVLTKNDCEVVIPKGQVCCGLPQYVYGDFETAKVNARK 230
Query: 62 NIKLYSNNDYP-IILPSGSCTGMMRHDYLELFEGHAEF-NMVKDFCSRVYELSEFLDK-K 118
I + D I++ +C M++ DY +LF + + F ++V E S+F+ K
Sbjct: 231 TIDSFLAKDVDTIVVACATCVAMLKEDYPKLFADEPNYLPKAQQFSAKVLEFSQFVAKIG 290
Query: 119 LQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTF 178
+ P+K+T+H CH +R KV + L++ L VE IE+ + CCG G
Sbjct: 291 IDQSKLHNSLPVKVTYHDPCHMVRGIKVTQQPRQLLKSLPKVEYIEMNEASRCCGASGLV 350
Query: 179 SVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLA 237
E+S + ++K +N++ V+++ ++ C+M I + G K MH D LA
Sbjct: 351 QAFYHEMSTDITRQKTQNVKDSGVEIVATSCPACMMRIQGGINMAGQNQKVMHVADLLA 409
>ref|NP_295453.1| (NC_001263) glycolate oxidase, iron-sulfur subunit [Deinococcus
radiodurans]
pir||G75361 glycolate oxidase, iron-sulfur subunit - Deinococcus radiodurans
(strain R1)
gb|AAF11285.1|AE002014_6 (AE002014) glycolate oxidase, iron-sulfur subunit [Deinococcus
radiodurans]
Length = 425
Score = 120 bits (301), Expect = 1e-26
Identities = 65/239 (27%), Positives = 123/239 (51%), Gaps = 4/239 (1%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
+V F A C A+ N + +++L + +EVV + Q CCG + ++G +E ++V
Sbjct: 179 RVAFLAGCAQQALTPNFNAATLRVLSRNGIEVVIPEGQGCCGAAALHTGARDEALRLVRA 238
Query: 62 NIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQ- 120
N+ ++ ++Y IL + + G +Y + G + + F ++V ++SE+L L+
Sbjct: 239 NLAAFNPDEYDAILSNAAGCGAGLKEYPVVLHGLPDEAQAQAFAAKVQDISEYLAGLLRD 298
Query: 121 ---VKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGT 177
EP+K+ +H CH V + + L+R + V L E+ + + CCG GT
Sbjct: 299 GELAPLMPTREPVKVAYHDACHLAHAQGVRSAPRELLRAIPGVTLTEIPEGDLCCGSAGT 358
Query: 178 FSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFL 236
+++++PE++ + + K KNI Q D+I S + GC I + +++ GS MH + L
Sbjct: 359 YNLEQPELANQLGQRKAKNILGTQPDLIASGNIGCHTQIQSHVRRQGSPVPVMHTVEVL 417
>ref|NP_214123.1| (NC_000918) oxido/reductase iron sulfur protein [Aquifex aeolicus]
pir||D70441 oxido/reductase iron sulfur protein - Aquifex aeolicus
gb|AAC07510.1| (AE000748) oxido/reductase iron sulfur protein [Aquifex aeolicus]
Length = 395
Score = 117 bits (293), Expect = 1e-25
Identities = 68/242 (28%), Positives = 122/242 (50%), Gaps = 19/242 (7%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
MK+ FF C+ Y N IK+L K V+ KD CCG P G E +K+
Sbjct: 171 MKLLFFTGCMIDVFYGKTGENVIKVLNKLGYTVIVPKDIKCCGAPHLYHGNTEAFEKLKE 230
Query: 61 YNIKLYSNNDYP-IILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKL 119
+N+K +Y +++ +C G ++ DY KD+ +V+ +E + +
Sbjct: 231 HNLKEIEKYEYDALVVACPTCGGALKEDY------------GKDW--KVFSFTEIIANE- 275
Query: 120 QVKYEDKGEPLKITWHSNCHALRVAKVI-DSAKNLIRQLKNVELIELEKEEECCGFGGTF 178
++++ KGE K+T H CH K+ ++ + ++KN E ++ EK + CCGF G F
Sbjct: 276 DIEFKGKGE--KVTVHVPCHYYTAMKLNPNNFYKALGKVKNAETVKAEKAQSCCGFAGLF 333
Query: 179 SVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLAS 238
S+K PE+S + +EK+ + + + D +V+ GC++ + ++K + + H D+L
Sbjct: 334 SIKNPELSEEIQREKMLDFKKTEADYVVTECPGCVLQLRDGVKKFKNQQEVKHIADYLGE 393
Query: 239 RL 240
R+
Sbjct: 394 RI 395
>ref|NP_243001.1| (NC_002570) glycolate oxidase iron-sulfur subunit [Bacillus
halodurans]
dbj|BAB05854.1| (AP001514) glycolate oxidase iron-sulfur subunit [Bacillus
halodurans]
Length = 451
Score = 100 bits (250), Expect = 1e-20
Identities = 64/239 (26%), Positives = 125/239 (51%), Gaps = 10/239 (4%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
+V A C+ ++S + I++L + +V KDQTCCG ++G E +++
Sbjct: 202 RVTLLAGCVMDVMFSEVNEATIRVLTRNGNDVSLPKDQTCCGALHVHAGDREMGRRLAKQ 261
Query: 62 NIKLYSNNDYPIILPSGSCTGMMRHDYLELF-EGHAE-FNMVKDFCSRVYELSEFLDKKL 119
N+K + N + II+ + C G M +Y ELF E E + + F +V ++S+ L
Sbjct: 262 NMKAFENEE-TIIVNAAGC-GSMLQEYPELFREVEREWYERAEAFAEKVKDVSKHL---Y 316
Query: 120 QVKYED-KGEP-LKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGT 177
YE KGE K+ +H CH V ++L+ ++ VELI +E + CCG G
Sbjct: 317 DTGYEKPKGEVRAKVAYHDACHLAHGQNVRQEPRDLLLKISGVELIPMENADRCCGSAGI 376
Query: 178 FSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFL 236
+++ P++++ ++++K++ + S V+++ + GC++ ++ ++K G + +H L
Sbjct: 377 YNLTHPKMASRVLEKKMECVPS-DVEMVSMGNPGCMLQMAMGVKKYGGNQRIIHTVQLL 434
>ref|NP_484667.1| (NC_003272) glycolate oxidase subunit (Fe-S) protein [Nostoc sp.
PCC 7120]
dbj|BAB72581.1| (AP003583) glycolate oxidase subunit (Fe-S) protein [Nostoc sp. PCC
7120]
Length = 450
Score = 97.1 bits (240), Expect = 2e-19
Identities = 57/238 (23%), Positives = 111/238 (45%), Gaps = 3/238 (1%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
+V C+ +S + +++L EVV K Q CC + G E+ K +
Sbjct: 203 RVGMILGCVQRLFFSPVNEATVRVLTANGCEVVIPKSQGCCAALPEHQGQTEQAKALAKQ 262
Query: 62 NIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFN-MVKDFCSRVYELSEFLDKK-L 119
I +++ D ++ + + G +Y + E AE+ K+F ++V + EFL L
Sbjct: 263 MIDSFADTDVDYVIINAAGCGHTLKEYGHILEDDAEYREKAKNFAAKVKDAQEFLATVGL 322
Query: 120 QVKYED-KGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTF 178
K K +PL + + CH L K+ + +++Q+ V++ E CCG G +
Sbjct: 323 TAKLSPLKDKPLNLVYQDACHLLHGQKISVQPRQILKQIPGVQIKEPLDAALCCGSAGVY 382
Query: 179 SVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFL 236
++ +PE++ + K+K+ N+ + ++I S + GC + I+ ++ G MH + L
Sbjct: 383 NMLQPEVAEELGKQKVTNLLNTGAELIASPNPGCALQITKHLELQGKKMGVMHPMELL 440
>ref|NP_390747.1| (NC_000964) similar to glycolate oxidase subunit [Bacillus
subtilis]
pir||E69984 glycolate oxidase subunit homolog ysfD - Bacillus subtilis
emb|CAA99598.1| (Z75208) hypothetical protein [Bacillus subtilis]
emb|CAB14829.1| (Z99118) similar to glycolate oxidase subunit [Bacillus subtilis]
Length = 444
Score = 96.7 bits (239), Expect = 2e-19
Identities = 61/250 (24%), Positives = 117/250 (46%), Gaps = 16/250 (6%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
+V FF+ CL ++ + +KLL+ ++V +Q CCG +SG K++
Sbjct: 197 RVAFFSGCLMDTMFLPTNNATLKLLQLAGCDIVIPPEQACCGALHGHSGEKNTGKELAKQ 256
Query: 62 NIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFN--------MVKDFCSRVYELSE 113
NI + D ++ + G +Y L + E++ +KDF S + EL +
Sbjct: 257 NIAAFEALDVDAVITNAGGCGAFLTEYDHLLKDDPEWSERAAAFVQKLKDFSSVLVEL-D 315
Query: 114 FLDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCG 173
F L ++ P +T+ +CH V + L++ +K E E+EK + CCG
Sbjct: 316 FHQMDLALE-----TPQVVTYQDSCHLRNVMHTSLEPRQLLKSIKGAEFKEMEKADSCCG 370
Query: 174 FGGTFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMG--SLTKPMH 231
G +++ E E+S ++ K+ +++ + +IV+A+ GCL+ + +++ G + +H
Sbjct: 371 SAGIYNIVEVEMSMKILDSKMAAVKATEAILIVTANPGCLLQMKLGIEREGLSGKVRAVH 430
Query: 232 FYDFLASRLG 241
D L G
Sbjct: 431 LADLLLEAAG 440
>ref|NP_243595.1| (NC_002570) glycolate oxidase subunit [Bacillus halodurans]
dbj|BAB06448.1| (AP001516) glycolate oxidase subunit [Bacillus halodurans]
Length = 334
Score = 96.7 bits (239), Expect = 2e-19
Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 16/245 (6%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
+V FF+ CL ++ + +KLL+ ++V +Q CCG +SG K++
Sbjct: 83 RVAFFSGCLMDTMFMKTNDATMKLLQLAGCDIVIPPEQACCGALHGHSGEKGGAKELAKR 142
Query: 62 NIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEF--------NMVKDFCSRVYELSE 113
NI + D I+ + G DY L + E+ + +KD S + EL+
Sbjct: 143 NILAFEELDADYIITNAGGCGAFLMDYGHLLQDEPEWVDRARRLSDKLKDISSVLVELAF 202
Query: 114 FLDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCG 173
+L + Y+ I++ +CH V + L++ +KN E E+ + CCG
Sbjct: 203 HQKYELTLPYQ------LISYQDSCHLRNVMNTSSEPRTLLQAIKNTEYREMNNADSCCG 256
Query: 174 FGGTFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMG--SLTKPMH 231
G +++ E E+S ++ K+K ++ IV+A+ GCL+ + +++ G + +H
Sbjct: 257 SAGIYNIVESEMSMNILDSKMKEVKGTGATTIVTANPGCLLQMKLGIEREGIADHVRAVH 316
Query: 232 FYDFL 236
D L
Sbjct: 317 IVDLL 321
>ref|NP_613419.1| (NC_003551) Succinate dehydrogenase/fumarate reductase Fe-S protein
[Methanopyrus kandleri AV19]
gb|AAM01349.1| (AE010313) Succinate dehydrogenase/fumarate reductase Fe-S protein
[Methanopyrus kandleri AV19]
Length = 492
Score = 92.4 bits (228), Expect = 4e-18
Identities = 52/227 (22%), Positives = 108/227 (46%), Gaps = 16/227 (7%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
+K FF CL + ++L + + ++ ++Q CCG P +G ++ +++
Sbjct: 259 VKAMFFTGCLVDYRLPDTGKALVRLAEELGIRLIVPREQVCCGSPLLRTGQHDRAERLAF 318
Query: 61 YNIKLYSNNDYPIILP-SGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKL 119
N++ + D +I+ C ++++Y EL E++ V +++E L +
Sbjct: 319 ENLETFRRVDPDVIVTVCAGCGATLKNNYPELLGDRFEWD--------VLDVTELL---V 367
Query: 120 QVKYEDKG----EPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFG 175
+++ ++G E +T+H CH R V D + LIR ++NVE +E+E+ + CCG G
Sbjct: 368 EIRAHERGFRLPERTTVTYHDPCHLKRGQGVEDEPRKLIRSIENVEFVEMEEPDRCCGAG 427
Query: 176 GTFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQK 222
G PE++ +M K + +V+ + C N+ +++
Sbjct: 428 GGVRSGLPELAELMSDVKAHMVRETGAEVLTTVCPFCEYNLREGLER 474
>emb|CAA04399.1| (AJ000942) Thiol:fumarate reductase subunit B [Methanothermobacter
thermautotrophicus]
Length = 488
Score = 90.9 bits (224), Expect = 1e-17
Identities = 57/223 (25%), Positives = 105/223 (46%), Gaps = 13/223 (5%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
++ FF CL + + +++LR+ EV Q CCG P +G + + +V
Sbjct: 260 RIGFFTGCLVDYRMPDVGMALLRVLREHGFEVDVPDGQVCCGSPMIRTGQLDIVEDLVER 319
Query: 62 NIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQV 121
N + D I + +G C ++ DY E N V ++SEFL ++
Sbjct: 320 NRRALEGYDTIITVCAG-CGATLKKDYPRY---GVELN--------VLDISEFLADRID- 366
Query: 122 KYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSVK 181
+ K +++T+H CH LR V + ++ + +E +E+EK+ +CCG GG
Sbjct: 367 DIKMKPVNMRVTYHDPCHLLRGQGVKLEPRKILNSIPGLEFVEMEKQGQCCGSGGGVKSG 426
Query: 182 EPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMG 224
+PEI+ + K+K + I VD +++ C ++I +++ G
Sbjct: 427 KPEIAESLGKKKAEMIRKVNVDAVITICPFCQLHIKDSLEMEG 469
>ref|NP_247056.1| (NC_000909) heterodisulfide reductase, subunit D (hdrD)
[Methanococcus jannaschii] [Methanocaldococcus
jannaschii]
sp|Q57557|Y092_METJA Putative iron-sulfur protein MJ0092
pir||D64311 fumarate reductase (EC 1.3.99.1) - Methanococcus jannaschii
gb|AAB98073.1| (U67466) heterodisulfide reductase, subunit D (hdrD) [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
Length = 489
Score = 90.9 bits (224), Expect = 1e-17
Identities = 54/223 (24%), Positives = 108/223 (48%), Gaps = 18/223 (8%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVL 60
++V FF CL N +AIK+L + VV K+Q CCG P + +G + + +
Sbjct: 260 LRVAFFTGCLVDFRLQNVGKDAIKVLNAHGVSVVIPKNQVCCGSPFFRTGQRDVAEMLKR 319
Query: 61 YNIKLYSNNDYP-IILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKL 119
N+++++ D ++ C +++DY K+ V +++E L +
Sbjct: 320 KNLEIFNKLDVDCVVTICAGCGSTLKNDY-------------KERKFEVKDITEVLTEVG 366
Query: 120 QVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFS 179
+KY K ++IT+H CH R K+ + +++ + +E I++ E CCG GG
Sbjct: 367 LLKY--KPLKMRITYHDPCHLRRGQKIYKQPREILKSIPELEFIDI--EARCCGAGGGVR 422
Query: 180 VKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQK 222
+P+I+ ++ K + + I VD +++ C +I ++++
Sbjct: 423 SGKPDIANLIGKSRARMIYDANVDAVITVCPFCEYHIRDSLKR 465
>ref|NP_223329.1| (NC_000921) glycerol-3-phosphate dehydrogenase [Helicobacter pylori
J99]
pir||A71912 glycerol-3-phosphate dehydrogenase - Helicobacter pylori (strain
J99)
gb|AAD06179.1| (AE001492) glycerol-3-phosphate dehydrogenase [Helicobacter pylori
J99]
Length = 433
Score = 90.9 bits (224), Expect = 1e-17
Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 17/240 (7%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
KV F CL Y + + +L K N++ + K Q CC P+Y +G + T +V
Sbjct: 182 KVAIFIGCLSNYHYQQVGESLLYILEKLNVQAIIPK-QECCSAPAYFTGDKDTTLFLVKK 240
Query: 62 NIKL---YSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNM----VKDFCSRVYELSEF 114
NI+ Y N II+P +C M+ +DY ++F G + ++ ++ ++Y S F
Sbjct: 241 NIEWFESYLNEVDAIIVPEATCASMLINDYYKVFLGETDKDLYVKRLEKITPKIYLASVF 300
Query: 115 LDK----KLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEE 170
L+K K ++ KG+ IT+H+ CHA + +A +R L N E +
Sbjct: 301 LEKHTPLKSLLEKIPKGKKETITYHNPCHAKKTL----NAHKEVRSLLNSHYEIKEMPDN 356
Query: 171 CCGFGG-TFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKP 229
CCGFGG T ++ E S + + K I + ++ + C M ++ A++ + P
Sbjct: 357 CCGFGGITMQTEKTEFSLKVGLLRAKEIMDTKARILSAECGACHMQLNNALKSLDDPNTP 416
>ref|NP_282141.1| (NC_002163) putative oxidoreductase ferredoxin-type electron
transport protein [Campylobacter jejuni]
pir||D81374 probable oxidoreductase ferredoxin-type electron transport protein
Cj0991c [imported] - Campylobacter jejuni (strain NCTC
11168)
emb|CAB73247.1| (AL139076) putative oxidoreductase ferredoxin-type electron
transport protein [Campylobacter jejuni]
Length = 421
Score = 90.1 bits (222), Expect = 2e-17
Identities = 59/233 (25%), Positives = 109/233 (46%), Gaps = 12/233 (5%)
Query: 3 VNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYN 62
+ FF CL Y + + +K+ ++ + V K+Q CCG P + +G ++ + + N
Sbjct: 176 IGFFVGCLANYFYIDTANAVLKITKELKINVDLMKEQVCCGAPQFFTGDFKSVEVLAKKN 235
Query: 63 IKLYSNNDY---PIILPSGSCTGMMRHDYLELFEGHAEFNMVKD---FCSRVYELSEFLD 116
I+ + II+P +C+ M++ DY F + + K S++Y SE+
Sbjct: 236 IEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDWAKRAKCVSSKIYMASEYFY 295
Query: 117 K--KLQVKYEDKGE-PLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCG 173
K L+ + K + IT+H CHA ++ V + L++ N +E+ CCG
Sbjct: 296 KFTSLEEILKTKNKFNYSITYHDPCHARKMQGVFKEPRELLK--TNYHFVEMSNSNTCCG 353
Query: 174 FGGTFSVKEPEISAVMV-KEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGS 225
FGG + A+ V +K + I+ + V+ + + C M IS A+++ S
Sbjct: 354 FGGVSMQTDYYDRALSVGLKKAQMIDESKASVVSAECSACRMQISNALEQNSS 406
>ref|NP_276956.1| (NC_000916) fumarate reductase [Methanothermobacter
thermautotrophicus] [Methanothermobacter
thermautotrophicus str. Delta H]
pir||E69114 fumarate reductase (EC 1.3.99.1) - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB86316.1| (AE000937) fumarate reductase [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 492
Score = 89.0 bits (219), Expect = 4e-17
Identities = 55/223 (24%), Positives = 105/223 (46%), Gaps = 13/223 (5%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
++ FF CL + +++LR+ +V + Q CCG P +G + + +V
Sbjct: 264 RIGFFTGCLVDYRMPEVGMALLRVLREHGFDVDVPEGQVCCGSPMIRTGQVDIVEDLVEK 323
Query: 62 NIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQV 121
N K + D I + +G C ++ DY + N V ++SEFL ++
Sbjct: 324 NRKALRDYDTIITVCAG-CGATLKKDYPRY---GVKLN--------VLDISEFLADRIDT 371
Query: 122 KYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSVK 181
+ K +++T+H CH R V + ++R++ +E +E+EK ++CCG GG
Sbjct: 372 -IKMKPVNMRVTYHDPCHLKRGQGVEFEPRKILRKIPGLEFVEMEKPDQCCGSGGGVKSG 430
Query: 182 EPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMG 224
+PE++ + ++K I VD +V+ C ++I ++ G
Sbjct: 431 KPEVAEALGRKKADMIRELDVDAVVTICPFCQLHIRDSLDLAG 473
>ref|NP_655194.1| (NC_003995) DUF224, Domain of unknown function (DUF224) [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 442
Score = 89.0 bits (219), Expect = 4e-17
Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 6/240 (2%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
+V FF CL ++ + +KLL+ ++V K Q+CCG ++G K++
Sbjct: 196 QVAFFTGCLMDTMFLETNNATMKLLQLAGCDIVIPKTQSCCGALHGHAGEKSGAKELAKR 255
Query: 62 NIKLYS--NNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKL 119
NIK + N DY I G ++ +DYL L + K F S++ +++ L +
Sbjct: 256 NIKAFEDLNIDYIITNAGGCGAYLVDYDYL-LKDDPQWAGRAKQFVSKIKDITAILVELD 314
Query: 120 QVKYED-KGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTF 178
K D + P IT+ +CH V + + L+ ++ E++ + CCG G +
Sbjct: 315 FHKRNDLRLTPQIITYQDSCHLRNVMRTSSEPRMLLEAIQGATYREMKDADRCCGSAGIY 374
Query: 179 SVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTK--PMHFYDFL 236
++ E+S + K+ + IV+A+ GCL+ + +++ G K +H D L
Sbjct: 375 NIVHSELSMEFLDYKMDRVHETDATTIVTANPGCLLQMKLGIEREGLSHKMRGIHIVDLL 434
>ref|NP_207460.1| (NC_000915) anaerobic glycerol-3-phosphate dehydrogenase, subunit C
(glpC) [Helicobacter pylori 26695]
pir||B64603 anaerobic glycerol-3-phosphate dehydrogenase, subunit C -
Helicobacter pylori (strain 26695)
gb|AAD07728.1| (AE000579) anaerobic glycerol-3-phosphate dehydrogenase, subunit C
(glpC) [Helicobacter pylori 26695]
Length = 433
Score = 88.2 bits (217), Expect = 7e-17
Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 19/253 (7%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
KV F CL Y + + +L K N++ + K Q CC P+Y +G + T +V
Sbjct: 182 KVAIFIGCLSNYHYQQVGESLLYILEKLNIQAIIPK-QECCSAPAYFTGDKDTTLFLVKK 240
Query: 62 NIKL---YSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNM----VKDFCSRVYELSEF 114
NI+ Y + II+P +C M+ +DY ++F G + ++ ++ ++Y S F
Sbjct: 241 NIEWFESYLDKVDAIIVPEATCASMLINDYYKVFLGEKDKDLYVKRLEKITPKIYLASVF 300
Query: 115 LDKKLQVKYE----DKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEE 170
L+K +K KG+ IT+H+ CHA + +A +R L N+ E +
Sbjct: 301 LEKHTPLKSLLEKIPKGKKETITYHNPCHAKKTL----NAHKEVRNLLNLHYEIKEMPDN 356
Query: 171 CCGFGG-TFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKP 229
CCGFGG T ++ S + + K I + ++ + C M ++ A++ + P
Sbjct: 357 CCGFGGITMQTQKAGFSLKVGLLRAKEIIDTKAAILSAECGACHMQLNNALKSLDDPNTP 416
Query: 230 --MHFYDFLASRL 240
+H + +A L
Sbjct: 417 PFLHPLELIAKAL 429
>ref|NP_440465.1| (NC_000911) glycolate oxidase subunit (Fe-S) protein [Synechocystis
sp. PCC 6803]
pir||S75231 (S)-2-hydroxy-acid oxidase (EC 1.1.3.15) - Synechocystis sp.
(strain PCC 6803)
dbj|BAA17145.1| (D90903) glycolate oxidase subunit (Fe-S) protein [Synechocystis
sp. PCC 6803]
Length = 460
Score = 81.3 bits (199), Expect = 9e-15
Identities = 50/233 (21%), Positives = 105/233 (44%), Gaps = 3/233 (1%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
+V C+ +S + +++L EVV + Q CC + G ++ + +
Sbjct: 211 RVGIILGCVQRLFFSPVNEATVRVLTANGCEVVIPQSQGCCAALPAHQGQTDQAEAIARQ 270
Query: 62 NIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEF-NMVKDFCSRVYELSEFLDK--K 118
I ++N + I+ + + G +Y + AE+ + F S+V +++EFL +
Sbjct: 271 MIDSFANTEVDYIIINAAGCGHTLKEYHHILADDAEYLPKAQAFVSKVRDINEFLMEIGL 330
Query: 119 LQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTF 178
Q + E + + CH + K+ + LI Q+ +++L E CCG G +
Sbjct: 331 NQTLHPVTEELTPVVYQDACHLIHGQKISLQPRQLIAQIPHLQLREPLDAALCCGSAGVY 390
Query: 179 SVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMH 231
++ +P ++ + ++K+ N+ +I+SA+ GC + I + K G +H
Sbjct: 391 NMLQPAVAEELGQQKVNNLCQTGAQLIISANPGCSLQIQKHLGKQGQNLGVIH 443
>ref|NP_633314.1| (NC_003901) Fe-S oxidoreductase [Methanosarcina mazei Goe1]
gb|AAM30986.1| (AE013360) Fe-S oxidoreductase [Methanosarcina mazei Goe1]
Length = 387
Score = 77.4 bits (189), Expect = 1e-13
Identities = 53/217 (24%), Positives = 103/217 (47%), Gaps = 20/217 (9%)
Query: 5 FFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYNIK 64
+F C + Y + ++L ++ V D+ CC P +G+ E+ +K++ +N++
Sbjct: 171 YFVGCFDSYRYPEFAKKTFEVL--QHFGVTLLPDEQCCSSPLLRTGFREDAEKIMEHNLE 228
Query: 65 LYSN-NDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQVKY 123
N + +I C ++++Y E RV L EFL + L+ +
Sbjct: 229 QIRNVGAHTLITGCAGCYTTLKNNYPEEL--------------RVISLPEFLAEHLE-EL 273
Query: 124 EDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNV-ELIELEKEEECCGFGGTFSVKE 182
K L +T+H CH R KV D+ + +I+ + N+ E+ +++ CCG GG +
Sbjct: 274 NLKRLDLSVTYHDPCHLGRHNKVYDAPRKVIQAICNLKEMKNIKENSRCCGGGGGVRIGY 333
Query: 183 PEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTA 219
P+IS + + ++ ++ VD IV++ C+ N+ A
Sbjct: 334 PDISLELARNRLDDV-PEGVDYIVTSCPLCVRNLRDA 369
>emb|CAA04339.1| (AJ000861) fumarate reductase [Campylobacter jejuni]
Length = 53
Score = 77.4 bits (189), Expect = 1e-13
Identities = 33/51 (64%), Positives = 42/51 (81%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYY 52
KV F+ATCLG+ + LNAIKLLR+E +EV+FKK+QTCC QPS+NSGY+
Sbjct: 3 KVYFYATCLGSTAMQQSVLNAIKLLRREGIEVIFKKNQTCCAQPSFNSGYF 53
>ref|NP_542039.1| (NC_003318) (S)-2-HYDROXY-ACID OXIDASE SUBUNIT GLCF [Brucella
melitensis]
gb|AAL54303.1| (AE009738) (S)-2-HYDROXY-ACID OXIDASE SUBUNIT GLCF [Brucella
melitensis]
Length = 429
Score = 73.2 bits (178), Expect = 2e-12
Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 21/213 (9%)
Query: 17 NASLNA--IKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYNIKLYSNN----- 69
N +NA ++LL + ++EV K + CCG ++ G E+ + +N+ +++
Sbjct: 197 NPGINAATLRLLNRFDIEVATPKGEGCCGSLVHHMGREEQAR----HNVDVWTREIETGG 252
Query: 70 -DYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDK---KLQVKYED 125
D I+ SG T + + Y+ + KD +RV L++ + + L++ D
Sbjct: 253 LDAIIVTASGCGTTIKDYGYMLRLDP-----AYKDKAARVSALAKDITEYLATLELPEPD 307
Query: 126 KGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSVKEPEI 185
+ L + +HS C K++ K+L+ + LE CCG GT+++ +PEI
Sbjct: 308 APKTLTVAYHSACSMQHGQKIVREPKDLLVKAGFTVKEPLEGHL-CCGSAGTYNIMQPEI 366
Query: 186 SAVMVKEKIKNIESRQVDVIVSADAGCLMNIST 218
+ + K+KNIE+ +I + + GC+ I+T
Sbjct: 367 ATKLRDRKVKNIEATGAALIATGNIGCMTQIAT 399
>ref|NP_233135.1| (NC_002506) anaerobic glycerol-3-phosphate dehydrogenase, subunit C
[Vibrio cholerae]
pir||G82422 anaerobic glycerol-3-phosphate dehydrogenase, chain C VCA0749
[imported] - Vibrio cholerae (group O1 strain N16961)
gb|AAF96647.1| (AE004403) anaerobic glycerol-3-phosphate dehydrogenase, subunit C
[Vibrio cholerae]
Length = 413
Score = 72.8 bits (177), Expect = 3e-12
Identities = 54/215 (25%), Positives = 105/215 (48%), Gaps = 20/215 (9%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
+V +F C + + ++++ N+ V + CCG P +G++ + +K L+
Sbjct: 174 QVAYFHGCYVNYNHPQLGKDFVRVMNAMNIGVRLLDSEKCCGVPLIANGFHNKARKNALH 233
Query: 62 NIKLYSN--NDY--PIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDK 117
N+K + NDY P++ S +C+ ++ +Y + + + V D +++ ++ FL K
Sbjct: 234 NVKHLTAMVNDYHAPVLSTSSTCSFTLQQEYPHVL--GVDNSQVVD---QIHYVTRFLLK 288
Query: 118 KLQVKYEDKGEPL--KITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFG 175
+ K +P+ K+ +H+ CH R V+ + + L++ + +EL+ L + ECCG
Sbjct: 289 EFMSGNAPKMKPVHKKVVYHTPCHLERSGNVMFTIE-LLKMVPGLELVVL--DSECCGLA 345
Query: 176 GTFSVKEPEISAVMVKEKIKNIESRQVDVIVSADA 210
GT+ KE E K I S D I ++DA
Sbjct: 346 GTYGFKEENY------EVSKKIGSHLFDAIQTSDA 374
>ref|NP_353690.1| (NC_003062) AGR_C_1194p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_531367.1| (NC_003304) glycolate oxidase iron-sulfur subunit [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK86475.1| (AE008001) AGR_C_1194p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL41683.1| (AE009035) glycolate oxidase iron-sulfur subunit [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 433
Score = 72.8 bits (177), Expect = 3e-12
Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 12/203 (5%)
Query: 23 IKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYNIKLYSNN------DYPIILP 76
++LL + +EVV + + CCG ++ G EE N+ ++ D II
Sbjct: 209 LRLLARLGIEVVVPRGEGCCGSLVHHMGREEEALASARRNVDVWMREMEEGGLDAIIITA 268
Query: 77 SGSCTGMMRHDY-LELFEGHAEFNMVKDFCSRVYELSEFLDKKLQVKYEDKGEPLKITWH 135
SG T + + + L L +AE + +++E+L + + +G L + +H
Sbjct: 269 SGCGTTIKDYGHMLRLDPAYAE--KAARVSALAKDITEYLASLDLPQRQSQG--LTVAYH 324
Query: 136 SNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSVKEPEISAVMVKEKIK 195
S C K+ + K L++ + + + CCG GT+++ +PEIS+ + K+K
Sbjct: 325 SACSMQHGQKITLAPKQLLKAA-GFTVRDPAEGHLCCGSAGTYNILQPEISSKLKARKVK 383
Query: 196 NIESRQVDVIVSADAGCLMNIST 218
NIE+ + DVI + + GC+ I T
Sbjct: 384 NIEATRADVIATGNIGCITQIGT 406
>ref|NP_384885.1| (NC_003047) PROBABLE GLYCOLATE OXIDASE IRON-SULFUR SUBUNIT PROTEIN
[Sinorhizobium meliloti]
emb|CAC45351.1| (AL591784) PROBABLE GLYCOLATE OXIDASE IRON-SULFUR SUBUNIT PROTEIN
[Sinorhizobium meliloti]
Length = 430
Score = 72.4 bits (176), Expect = 4e-12
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 14/207 (6%)
Query: 23 IKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYNIKLY------SNNDYPIILP 76
I+LL + +EVV + CCG ++ G E+ + +NI ++ D II
Sbjct: 208 IRLLTGQGVEVVVSAGEGCCGALVHHMGRDEQALQAGRHNIDVWLKAAEEDGLDAIIITA 267
Query: 77 SGSCTGMMRHDY-LELFEGHAE-FNMVKDFCSRVYELSEFLDKKLQVKYEDKGEPLKITW 134
SG T + + + L L +AE V V E LD E L + +
Sbjct: 268 SGCGTTIKDYGHMLRLDPAYAEKAARVSALAKDVTEYLATLDLP-----EQGARNLTVAY 322
Query: 135 HSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSVKEPEISAVMVKEKI 194
HS C K+ + K L+++ + E + CCG GT+++ +PEISA + K+
Sbjct: 323 HSACSMQHGQKITSAPKQLLKRA-GFSVREPAEGHLCCGSAGTYNILQPEISAKLKARKV 381
Query: 195 KNIESRQVDVIVSADAGCLMNISTAMQ 221
+NIE+ + +VI + + GC+ I++ +
Sbjct: 382 RNIEATKPEVIATGNIGCITQIASGTE 408
>ref|NP_619484.1| (NC_003552) iron-sulfur binding reductase [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM07964.1| (AE011185) iron-sulfur binding reductase [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 386
Score = 71.6 bits (174), Expect = 7e-12
Identities = 50/217 (23%), Positives = 102/217 (46%), Gaps = 20/217 (9%)
Query: 5 FFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYNIK 64
+F C + Y + +L++ V D+ CC P +G+ E+ +K++ +N++
Sbjct: 170 YFVGCFDSYRYPEFAKKTFGVLQR--FGVTLLPDEQCCASPLLRTGFREDAEKIMEHNLE 227
Query: 65 -LYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQVKY 123
+ + +I C ++++Y + RV L EFL + L+ +
Sbjct: 228 QIRKMGAHTVITGCAGCYTTLKNNYPKEL--------------RVISLPEFLAEHLE-EL 272
Query: 124 EDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNV-ELIELEKEEECCGFGGTFSVKE 182
K L +T+H CH R KV D+ + +I+ + + E+ +++ CCG GG +
Sbjct: 273 NLKHLDLTVTYHDPCHLGRHNKVYDAPRKVIQAICTLKEMKNIKENSRCCGGGGGVRIGY 332
Query: 183 PEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTA 219
P+IS + + +++++ VD IV++ C+ N+ A
Sbjct: 333 PDISLELARNRLEDV-PEGVDYIVTSCPLCVRNLRDA 368
>ref|NP_407272.1| (NC_003143) anaerobic glycerol-3-phosphate dehydrogenase subunit C
[Yersinia pestis]
emb|CAC93292.1| (AJ414159) anaerobic glycerol-3-phosphate dehydrogenase subunit C
[Yersinia pestis]
Length = 415
Score = 69.7 bits (169), Expect = 3e-11
Identities = 54/236 (22%), Positives = 100/236 (41%), Gaps = 18/236 (7%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
+V FF C + + + + N+ V K + CCG P +G+ E+ KK
Sbjct: 169 QVAFFHGCFVNYNHPQLGKDLVSVFNAMNIGVQLLKREKCCGVPLIVNGFIEQAKKQARV 228
Query: 62 NIKLYSN----NDYPIILPSGSCTGMMRHDYLELFEGHA-----EFNMVKDFCSRVYELS 112
N++ ++ D P++ S SCT +R +Y L + + + + R+ +
Sbjct: 229 NLESLTDTVIGRDIPVVATSSSCTFTLRDEYPHLLDVDTTPVRDKVELATRYLYRLLDQG 288
Query: 113 EFLDKK----LQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKE 168
L K L + PL+I +H+ CH ++ + L++++ VEL+ L +
Sbjct: 289 RELPLKPLFSLNPLLASQEAPLRIAYHTPCHMEKMGWTAYTLA-LLQRIPGVELVVL--D 345
Query: 169 EECCGFGGTFSVKEPE--ISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQK 222
+CCG GT+ K S + + IE VD++++ C I + K
Sbjct: 346 SQCCGIAGTYGFKSENYATSQGIGASLFQQIEDSGVDLVITDCETCKWQIEMSTSK 401
>ref|NP_069342.1| (NC_000917) iron-sulfur binding reductase [Archaeoglobus fulgidus]
pir||B69313 iron-sulfur binding reductase homolog - Archaeoglobus fulgidus
gb|AAB90732.1| (AE001069) iron-sulfur binding reductase [Archaeoglobus fulgidus]
Length = 366
Score = 68.6 bits (166), Expect = 6e-11
Identities = 55/234 (23%), Positives = 104/234 (43%), Gaps = 19/234 (8%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLE-VVFKKDQTCCGQPSYNSGYYEETKKVVL 60
K +FA C + N + + +L K ++ + K++ CCG P +G + +++
Sbjct: 131 KTLYFAGCTASFRLQNLAKSTASVLEKLGIDFTIAGKNEYCCGSPFLRTGQKDIVERLFE 190
Query: 61 YNIKLYSNNDYPIILPSGSCTGMMRH---DYLELFEGHAEFNMVKDFCSRVYELSEFLDK 117
N + I+ S C G R DY ++ E +F V LDK
Sbjct: 191 KNYAYWQKMGIERIITS--CPGCYRTISLDYPKIAEEKGY-----EFDIEVVHTVSILDK 243
Query: 118 KLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEE---CCGF 174
+ + D LK T+H CH R + + +N+I++L + +E+E+ E CCG
Sbjct: 244 MGEFEKID----LKATYHDPCHLGRHMGMYEEPRNVIKRL-GINFVEMERNREQALCCGA 298
Query: 175 GGTFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTK 228
GG + PEIS + ++++ + +++ C ++S + +K+G+ K
Sbjct: 299 GGGLRSQFPEISFEIGRQRVLEAMETGAEYLITCCPFCEYHLSKSAEKLGNRIK 352
>ref|NP_615490.1| (NC_003552) heterodisulfide reductase, subunit D [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM03970.1| (AE010713) heterodisulfide reductase, subunit D [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 382
Score = 65.5 bits (158), Expect = 5e-10
Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 14/222 (6%)
Query: 3 VNFFATCLGAAIYSNASLNAIKLLRKENLE-VVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
V +F C G I N + + LL ++ V + CCG S +G +
Sbjct: 119 VVYFPGCAGTYINKNMAQATVALLENAGVDYTVLSGLEYCCGAVSAGAGNPAPILRNGQR 178
Query: 62 NIKLYSNNDYPIILPS-GSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQ 120
NI+ I+L + C + Y ++F G +F V ++S++L++ L
Sbjct: 179 NIEEVRKRGAKILLTACPGCFKAFKEIYPKMF-GELDFE--------VLQVSQYLERLLG 229
Query: 121 VKYEDKGEPLK--ITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEE-CCGFGGT 177
G LK + +H CH R V A+N++ + EL E CCGFGG
Sbjct: 230 EGKFSPGAALKHRVFYHDPCHLTRGMGVYREARNVLENIPGTELANKTPENSACCGFGGG 289
Query: 178 FSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTA 219
V P S + ++ + DVI++ GC+ N+ A
Sbjct: 290 VRVNYPSESLSVASDRYEAAGKLGCDVIITNCGGCMQNLLEA 331
>ref|NP_461228.1| (NC_003197) sn-glycerol-3-phosphate dehydrogenase (anaerobic),
K-small subunit [Salmonella typhimurium LT2]
gb|AAL21187.1| (AE008802) sn-glycerol-3-phosphate dehydrogenase (anaerobic),
K-small subunit [Salmonella typhimurium LT2]
Length = 396
Score = 65.1 bits (157), Expect = 6e-10
Identities = 56/235 (23%), Positives = 103/235 (43%), Gaps = 28/235 (11%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
+V FF C + + IK+L V + CCG P +G+ ++ +K +
Sbjct: 162 QVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAIS 221
Query: 62 NI----KLYSNNDYPIILPSGSCTGMMRHDYLELFE-GHAEFNMVKDFCSRVYELSEFLD 116
N+ + + P+I S +CT +R +Y E+ + +A + +R +L
Sbjct: 222 NVESLREAIAVKGIPVIATSSTCTFALRDEYPEVLDVDNAGLREHIELATR------WLW 275
Query: 117 KKLQVKYEDKGE-------PLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEE 169
+KL D G+ PLK+ +H+ CH ++ + + + L+RQ+ +EL L +
Sbjct: 276 RKL-----DAGKTLPLNPLPLKVVYHTPCHMEKMGWTLYTLE-LLRQIPGLELTVL--DS 327
Query: 170 ECCGFGGTFSVKEPE--ISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQK 222
+CCG GT+ K+ S + + IE D++V+ C I + K
Sbjct: 328 QCCGIAGTYGFKKENYPTSQSIGAPLFRQIEESGADIVVTDCETCKWQIEMSTSK 382
>ref|NP_107327.1| (NC_002678) glycolate oxidase subunit, (Fe-S)protein [Mesorhizobium
loti]
dbj|BAB53113.1| (AP003010) glycolate oxidase subunit [Mesorhizobium loti]
Length = 441
Score = 65.1 bits (157), Expect = 6e-10
Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 21/230 (9%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
+V C + + + I LL + +EVV + CCG ++ G E
Sbjct: 188 RVAILTGCAQSVLDPAINDTTISLLTRLGVEVVVPPGEGCCGALVHHMGREEAALASARQ 247
Query: 62 NIKLYSNN------DYPIILPSGSCTGMMRHDY-LELFEGHAEFNMVKDFCSRVYELSEF 114
N+ ++ + D II SG T + + + L L +A D +RV L++
Sbjct: 248 NVDAWTRSIEQGGLDAIIITASGCGTTIKDYGFMLRLDPAYA------DKAARVSALAKD 301
Query: 115 LDKKLQVKYEDKGEPLK-----ITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEE 169
+ + L D EP++ + +HS C K++ K L+ + + + E +
Sbjct: 302 ITEYLASL--DLPEPVRRPGTVVAYHSACLMQHGQKIVRQPKELLAKAGFI-VREPREGH 358
Query: 170 ECCGFGGTFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTA 219
CCG GT+++ + EISA + K+KNIE+ ++ + + GC+ I++A
Sbjct: 359 LCCGSAGTYNILQSEISAKLRDRKVKNIEATGASIVATGNIGCITQIASA 408
>ref|NP_456829.1| (NC_003198) anaerobic glycerol-3-phosphate dehydrogenase subunit C
[Salmonella enterica subsp. enterica serovar Typhi]
emb|CAD07518.1| (AL627274) anaerobic glycerol-3-phosphate dehydrogenase subunit C
[Salmonella enterica subsp. enterica serovar Typhi]
Length = 396
Score = 65.1 bits (157), Expect = 6e-10
Identities = 56/235 (23%), Positives = 103/235 (43%), Gaps = 28/235 (11%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
+V FF C + + IK+L V + CCG P +G+ ++ +K +
Sbjct: 162 QVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAIS 221
Query: 62 NI----KLYSNNDYPIILPSGSCTGMMRHDYLELFE-GHAEFNMVKDFCSRVYELSEFLD 116
N+ + + P+I S +CT +R +Y E+ + +A + +R +L
Sbjct: 222 NVESLREAIAVKGIPVIATSSTCTFALRDEYPEVLDVDNAGLREHIELATR------WLW 275
Query: 117 KKLQVKYEDKGE-------PLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEE 169
+KL D G+ PLK+ +H+ CH ++ + + + L+RQ+ +EL L +
Sbjct: 276 RKL-----DAGKTLPLNPLPLKVVYHTPCHMEKMGWTLYTLE-LLRQIPGLELTVL--DS 327
Query: 170 ECCGFGGTFSVKEPE--ISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQK 222
+CCG GT+ K+ S + + IE D++V+ C I + K
Sbjct: 328 QCCGIAGTYGFKKENYPTSQSIGAPLFRQIEESGADIVVTDCETCKWQIEMSTSK 382
>ref|NP_615648.1| (NC_003552) heterodisulfide reductase, subunit D [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04128.1| (AE010730) heterodisulfide reductase, subunit D [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 409
Score = 63.9 bits (154), Expect = 1e-09
Identities = 51/246 (20%), Positives = 104/246 (41%), Gaps = 14/246 (5%)
Query: 5 FFATCLGAAIYSNASLNAIKLLRKENLE-VVFKKDQTCCGQPSYNSGYY---EETKKVVL 60
+F C + ++L K +E + +D+ CCG +G + K++
Sbjct: 167 YFTGCTAGYKQLALAFATSRVLNKLGIEFTMLGEDEWCCGSALIRTGQVHVNDVAKELAK 226
Query: 61 YNIK-LYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKL 119
+N++ + + ++ C + D+ L F +V + E E L KK
Sbjct: 227 HNVEAIKAKGATKVLYACAGCFRASKVDWPRLLGEELPFEVV-----HITEFLEDLIKKD 281
Query: 120 QVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEE---CCGFGG 176
++K+E K +T+H CH R V + + ++ + V+ +E+++ +E CCG GG
Sbjct: 282 KIKWE-KSLDKTVTYHDPCHLGRHVGVFEPPRYVLSHIPGVKFVEMDRVKEFQRCCGAGG 340
Query: 177 TFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFL 236
P+++ + + ++K+ DV+ SA C N+ + + + +
Sbjct: 341 GVKAGIPDLALSVAESRVKDALDTNADVLSSACPFCKRNLMDGRDSLKADIEVEDVIVLV 400
Query: 237 ASRLGL 242
A LGL
Sbjct: 401 AQALGL 406
>ref|NP_288819.1| (NC_002655) sn-glycerol-3-phosphate dehydrogenase (anaerobic),
K-small subunit [Escherichia coli O157:H7 EDL933]
ref|NP_311155.1| (NC_002695) anaerobic sn-glycerol-3-phosphate dehydrogenase K-small
subunit [Escherichia coli O157:H7]
ref|NP_416746.1| (NC_000913) sn-glycerol-3-phosphate dehydrogenase (anaerobic),
K-small subunit [Escherichia coli K12]
sp|P13034|GLPC_ECOLI Anaerobic glycerol-3-phosphate dehydrogenase subunit C (G-3-P
dehydrogenase)
pir||DEECNC glycerol-3-phosphate dehydrogenase (EC 1.1.99.5) (anaerobic) chain
C [validated] - Escherichia coli
gb|AAC75303.1| (AE000314) sn-glycerol-3-phosphate dehydrogenase (anaerobic),
K-small subunit [Escherichia coli K12]
dbj|BAA16062.1| (D90855) glycerol-3-phosphate dehydrogenase (EC 1.1.99.5)
(anaerobic) chain C [Escherichia coli]
gb|AAG57374.1|AE005456_11 (AE005456) sn-glycerol-3-phosphate dehydrogenase (anaerobic),
K-small subunit [Escherichia coli O157:H7 EDL933]
dbj|BAB36551.1| (AP002561) anaerobic sn-glycerol-3-phosphate dehydrogenase K-small
subunit [Escherichia coli O157:H7]
Length = 396
Score = 63.2 bits (152), Expect = 2e-09
Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 26/228 (11%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
+V FF C + + IK+L V + CCG P +G+ ++ +K +
Sbjct: 162 QVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAIT 221
Query: 62 NIKLYSN----NDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDK 117
N++ P+I S +CT +R +Y E+ K + + +L +
Sbjct: 222 NVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDN-----KGLRDHIELATRWLWR 276
Query: 118 KLQVKYEDKGE-------PLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEE 170
KL D+G+ PLK+ +H+ CH ++ + + + L+R + +EL L + +
Sbjct: 277 KL-----DEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLE-LLRNIPGLELTVL--DSQ 328
Query: 171 CCGFGGTFSVKEPE--ISAVMVKEKIKNIESRQVDVIVSADAGCLMNI 216
CCG GT+ K+ S + + IE D++V+ C I
Sbjct: 329 CCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQI 376
>ref|NP_378370.1| (NC_003106) 396aa long hypothetical anaerobic glycerol-3-phosphate
dehydrogenase subunit C [Sulfolobus tokodaii]
dbj|BAB67479.1| (AP000989) 396aa long hypothetical anaerobic glycerol-3-phosphate
dehydrogenase subunit C [Sulfolobus tokodaii]
Length = 396
Score = 62.0 bits (149), Expect = 5e-09
Identities = 54/213 (25%), Positives = 96/213 (44%), Gaps = 23/213 (10%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
KV F TCL Y + +++ K +EVV K + CCG P + G + KK Y
Sbjct: 169 KVVLFHTCLVENFYPELGFDLVEVFNKLGIEVV-KANFLCCGAPMLDVGDAKRLKKNAEY 227
Query: 62 NIKL---YSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEF---L 115
N L + Y I+ P +CT M+ +Y + + +VY+ E+ L
Sbjct: 228 NYSLMRKFVEQGYDIVSPIPTCTLMLSKEYPLILQKEG---------IKVYDAMEYLLKL 278
Query: 116 DKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQL-KNVELIELEKEEECCGF 174
D++ ++K K E I +H CH L+ KV + ++R+L VE+ ++ C G
Sbjct: 279 DREGKIKISGKLEK-SIFYHPPCH-LKYLKVGYAGVTIMRKLGAKVEI----SDKGCSGI 332
Query: 175 GGTFSVKEPEISAVMVKEKIKNIESRQVDVIVS 207
G + ++ E + V+ + + + D+ ++
Sbjct: 333 DGGWGLRNYEKARVVGSKMMNAFAENKADIFMT 365
>emb|CAA70997.1| (Y09870) heterodisulfide reductase [Methanosarcina barkeri]
Length = 409
Score = 61.2 bits (147), Expect = 9e-09
Identities = 43/215 (20%), Positives = 92/215 (42%), Gaps = 17/215 (7%)
Query: 37 KDQTCCGQPSYNSGYY---EETKKVVLYNIK-LYSNNDYPIILPSGSCTGMMRHDYLELF 92
+++ CCG +G + +++ +N++ L ++ C + D+ L
Sbjct: 200 EEEWCCGSALIRTGQVHVDDVARELARHNVEALQKKGAKKVLFACAGCFRAAKIDWPRLL 259
Query: 93 EGHAEFNMVKDFCSRVYELSEFLDKKLQVKYEDKGEPLK--ITWHSNCHALRVAKVIDSA 150
F ++ +++FL +Q +P+ IT+H CH R V ++
Sbjct: 260 GKELPFEVI--------HITQFLADLIQADKIKWEKPINKTITYHDPCHLGRHVGVFNAP 311
Query: 151 KNLIRQLKNVELIELEKEEE---CCGFGGTFSVKEPEISAVMVKEKIKNIESRQVDVIVS 207
+ ++ + V+ +E+++ +E CCG GG P+++ M + ++K+ D++ S
Sbjct: 312 RYVLSHIPGVKFVEMDRSKEFQRCCGAGGGVKAGMPDLAVAMGESRVKDALETNADILSS 371
Query: 208 ADAGCLMNISTAMQKMGSLTKPMHFYDFLASRLGL 242
A C N+S + S + +A LGL
Sbjct: 372 ACPFCKRNLSDGRDALKSDIVVEDIIELVAEALGL 406
>ref|NP_633710.1| (NC_003901) Iron-sulfur binding reductase [Methanosarcina mazei
Goe1]
gb|AAM31382.1| (AE013405) Iron-sulfur binding reductase [Methanosarcina mazei
Goe1]
Length = 382
Score = 60.8 bits (146), Expect = 1e-08
Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 14/222 (6%)
Query: 3 VNFFATCLGAAIYSNASLNAIKLLRKENLE-VVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
V +F C G I + ++ LL K ++ V + CCG S +G K
Sbjct: 119 VVYFPGCAGTYINKVMAQASVALLEKAGVDYTVLSGLEYCCGAVSAGAGDQGPICKHGQK 178
Query: 62 NI-KLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQ 120
NI ++ +I C + Y +F G +F V ++S++LD+ L+
Sbjct: 179 NIDEIRKRGAKVLITACPGCFKAFKDIYPRMF-GKLDFE--------VLQVSQYLDRLLK 229
Query: 121 VKYEDKGEPLK--ITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKE-EECCGFGGT 177
LK + +H CH R V A++++ ++ L E CCGFGG
Sbjct: 230 EGRLTPENALKFRVFYHDPCHLTRGMGVYTEARDVLEKIPGTGLANKTPEGSACCGFGGG 289
Query: 178 FSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTA 219
V P S + ++ + E D I++ GC+ N++ A
Sbjct: 290 VRVNYPSESISVASDRFRAAEKLGCDAIITNCGGCMQNLAEA 331
>ref|NP_438843.1| (NC_000907) anaerobic glycerol-3-phosphate dehydrogenase, subunit C
(glpC) [Haemophilus influenzae Rd]
sp|P43801|GLPC_HAEIN Anaerobic glycerol-3-phosphate dehydrogenase subunit C (G-3-P
dehydrogenase)
pir||C64086 glycerol-3-phosphate dehydrogenase (EC 1.1.99.5) chain C, anaerobic
- Haemophilus influenzae (strain Rd KW20)
gb|AAC22343.1| (U32751) anaerobic glycerol-3-phosphate dehydrogenase, subunit C
(glpC) [Haemophilus influenzae Rd]
Length = 426
Score = 60.5 bits (145), Expect = 2e-08
Identities = 54/230 (23%), Positives = 99/230 (42%), Gaps = 30/230 (13%)
Query: 2 KVNFFATCLGAAIYSNASLNA--IKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVV 59
KV +F C Y+N L +K+ N+ V+ + + CCG P +G+ + +
Sbjct: 191 KVAYFHGCY--VNYNNPQLGKEFLKVFNAMNIGVMLLEKEKCCGLPLMVNGFPNRARNIA 248
Query: 60 LYNI----KLYSNNDYPIILPSGSCTGMMRHDY-----LELFEGHAEFNMVKDFCSRVYE 110
+N K+ N +I + SC+ +R +Y ++ + +MV F ++++
Sbjct: 249 QFNTDYIGKMVDENGIDVISEASSCSLNLRDEYHHILGIDNAKVRPHIHMVTPFLYQLFK 308
Query: 111 LSEFLDKKLQVKYEDKGEPLK--ITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKE 168
+ L K PLK + +H+ CH + A +++++ ++E+I L
Sbjct: 309 EGKTLPLK----------PLKLRVAYHTACHVDK-AGWAPYTLEVLKKIPSLEIIML--P 355
Query: 169 EECCGFGGTFSVKEP--EISAVMVKEKIKNIESRQVDVIVSADAGCLMNI 216
+CCG GT+ K EIS + K NI D ++S C I
Sbjct: 356 SQCCGIAGTYGFKSENYEISQSIGKNLFDNINEGGFDYVISECQTCKWQI 405
>ref|NP_619272.1| (NC_003552) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM07752.1| (AE011161) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 1016
Score = 60.1 bits (144), Expect = 2e-08
Identities = 50/244 (20%), Positives = 102/244 (41%), Gaps = 12/244 (4%)
Query: 5 FFATCLGAAIYSNASLNAIKLLRKENLEVVFKKD-QTCCGQPSYNSGYYEETKKVVLYNI 63
+FA C + + + ++ A+++L +E D + CCG P +G ++ +K++ N+
Sbjct: 638 YFAGCTASFVEKDVAVGAVRMLDDAEIEFTGLGDKEACCGIPMLVAGKWDVFEKIMRMNV 697
Query: 64 KLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQVKY 123
++ S +M H ++ AE + ++ SE L ++L V
Sbjct: 698 ANMKKRGVKTVITSCPACWLMWH---TVYPQWAE-KLGIEYGLETKHYSEVLAERLDVLK 753
Query: 124 EDKGEPLK--ITWHSNCHALRV-AKVIDSAKNLIRQLKNVELIELEKEEE---CCGFGGT 177
+PL + WH +CH R KV + + L++ + ++ ELE E CCG
Sbjct: 754 PKFKKPLNKVVAWHDSCHLGRAGGKVYEPPRELLKAIPGLQFRELEYNREQAHCCG-SVV 812
Query: 178 FSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLA 237
+ EP ++ + +++ D++ + C + A +K + +A
Sbjct: 813 SLIAEPPVAYKLGGMRLQEAADVNADILAALCPCCTVQFRVAAEKNNMKIESQDLGALVA 872
Query: 238 SRLG 241
LG
Sbjct: 873 RSLG 876
>ref|NP_518575.1| (NC_003295) PUTATIVE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
emb|CAD13982.1| (AL646059) PUTATIVE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
Length = 1345
Score = 60.1 bits (144), Expect = 2e-08
Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 31/199 (15%)
Query: 3 VNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYN 62
V +F C ++S L +L ++ V CCG P +G Y++ +K+V N
Sbjct: 1069 VFYFPGCGSERLFSQVGLATQAMLWHAGVQTVLPPGYLCCGYPQRGNGQYDKAEKIVTDN 1128
Query: 63 IKLYSN--------NDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEF 114
L+ + +++ G+C +D L + EF+ + C R+ ++ EF
Sbjct: 1129 RVLFHRVANTLNYLDIKTVVVSCGTC-----YDQLAGY----EFDKIFPGC-RIIDIHEF 1178
Query: 115 -LDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQL------KNVELIELEK 167
L+K +++ D + ++ +H CH K +D K L+ QL + + +EK
Sbjct: 1179 LLEKGVKI---DGVQGVRYMYHDPCHT--PIKTMDPTK-LVNQLMGGNKGADGQTRAIEK 1232
Query: 168 EEECCGFGGTFSVKEPEIS 186
+ CCG GT +V P+IS
Sbjct: 1233 NDRCCGESGTLAVSRPDIS 1251
>gb|AAA83866.1| (M20938) glycerol-3-phosphate dehydrogenase subunit C [Escherichia
coli]
Length = 396
Score = 60.1 bits (144), Expect = 2e-08
Identities = 49/207 (23%), Positives = 90/207 (42%), Gaps = 26/207 (12%)
Query: 23 IKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYNIKLYSN----NDYPIILPSG 78
IK+L V + CCG P +G+ ++ +K + N++ P+I S
Sbjct: 183 IKVLNAMGTGVQLLSKEKCCGVPVIANGFTDKARKQAITNVESIREAVGVKGIPVIATSS 242
Query: 79 SCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQVKYEDKGE-------PLK 131
+CT +R +Y E+ K + + +L +KL D+G+ PLK
Sbjct: 243 TCTFALRDEYPEVLNVDN-----KGLRDHIELATRWLWRKL-----DEGKTLPLKPLPLK 292
Query: 132 ITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSVKEPE--ISAVM 189
+ +H+ CH ++ + + + L+R + +EL L + +CCG GT+ K+ S +
Sbjct: 293 VVYHTPCHMEKMGWTLYTLE-LLRNIPGLELTVL--DSQCCGIAGTYGFKKENYPTSQAI 349
Query: 190 VKEKIKNIESRQVDVIVSADAGCLMNI 216
+ IE D++V+ C I
Sbjct: 350 GAPLFRQIEESGADLVVTDCETCKWQI 376
>ref|NP_520789.1| (NC_003295) PROBABLE GLYCOLATE OXIDASE (IRON-SULFUR SUBUNIT)
PROTEIN [Ralstonia solanacearum]
emb|CAD16375.1| (AL646071) PROBABLE GLYCOLATE OXIDASE (IRON-SULFUR SUBUNIT) PROTEIN
[Ralstonia solanacearum]
Length = 415
Score = 57.0 bits (136), Expect = 2e-07
Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 18/222 (8%)
Query: 9 CLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYNIKLY-- 66
C+ A+ N + A ++ + +++V CCG Y+ + + NI +
Sbjct: 181 CVQPAMSPNINAAAARVFDRLGVQLVSADRAGCCGAIRYHMNDHAGGLGNMRANIDAWWP 240
Query: 67 --SNNDYPIILPSGSCTGMMRHDYLELFEGHAEFN--------MVKDFCSRVYELSEFLD 116
I++ + C M++ +Y L ++ M +D C L F D
Sbjct: 241 HIEAGAEAIVMTASGCGAMVK-EYGHLLRDDPDYAERAARVSAMTRDLCE---VLPAFSD 296
Query: 117 KKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGG 176
+ L+ + P ++ WH+ C L+ + I A + L VE+ CCG G
Sbjct: 297 QLLRQAKPEAHRP-RVAWHAPC-TLQHGQQIRGAVEGLLALLGVEVRLCTDSHLCCGSAG 354
Query: 177 TFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNIST 218
T+SV +P ++ + +K++ + + Q + IVSA+ GC+ ++ +
Sbjct: 355 TYSVLQPGLAYRLRDDKLRRLLATQPERIVSANIGCVTHLQS 396
>ref|NP_633868.1| (NC_003901) Heterodisulfide reductase, subunit [Methanosarcina
mazei Goe1]
gb|AAM31540.1| (AE013421) Heterodisulfide reductase, subunit [Methanosarcina mazei
Goe1]
Length = 420
Score = 56.2 bits (134), Expect = 3e-07
Identities = 43/213 (20%), Positives = 91/213 (42%), Gaps = 13/213 (6%)
Query: 37 KDQTCCGQPSYNSGYY---EETKKVVLYNIK-LYSNNDYPIILPSGSCTGMMRHDYLELF 92
+++ CCG +G + +++ +N++ L ++ C + D+ L
Sbjct: 211 EEEWCCGSALIRTGQVHVDDVPRELARHNVEALKKKGAKKVLYACAGCFRASKVDWPRLL 270
Query: 93 EGHAEFNMVKDFCSRVYELSEFLDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKN 152
F +V V E L K+ ++K+E K +T+H CH R V D+ +
Sbjct: 271 GEELPFEVV-----HVAEFLADLIKQDKIKWE-KSINKTVTYHDPCHLGRHVGVFDAPRY 324
Query: 153 LIRQLKNVELIELEKEEE---CCGFGGTFSVKEPEISAVMVKEKIKNIESRQVDVIVSAD 209
++ + V+ +E+++ +E CCG GG P+++ + + ++K+ + D++ S
Sbjct: 325 VLSHIPGVKFVEMDRVKEFQRCCGAGGGVKAGIPDLALGVAESRVKDAVATDADILSSCC 384
Query: 210 AGCLMNISTAMQKMGSLTKPMHFYDFLASRLGL 242
C N+ + + +A LGL
Sbjct: 385 PFCKRNLMDGRDSLKVDMVVEDVIELVAEALGL 417
>ref|NP_417452.1| (NC_000913) glycolate oxidase iron-sulfur subunit [Escherichia coli
K12]
pir||H65083 glycolate oxidase subunits GlcE and GlcF - Escherichia coli
(strain K-12)
gb|AAA69145.1| (U28377) ORF_f761 [Escherichia coli]
gb|AAC76014.1| (AE000380) glycolate oxidase iron-sulfur subunit [Escherichia coli
K12]
Length = 761
Score = 55.5 bits (132), Expect = 5e-07
Identities = 43/215 (20%), Positives = 94/215 (43%), Gaps = 6/215 (2%)
Query: 9 CLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYNIKLY-- 66
C + N + ++L + + V+ + CCG Y+ E+ NI +
Sbjct: 530 CAQPTLSPNTNAATARVLDRLGISVMPANEAGCCGAVDYHLNAQEKGLARARNNIDAWWP 589
Query: 67 -SNNDYPIILPSGSCTGMMRHDYLELFEGHAEF-NMVKDFCSRVYELSEFLDKKLQVKYE 124
IL + S G +Y ++ + A + + + +L E L ++ K
Sbjct: 590 AIEAGAEAILQTASGCGAFVKEYGQMLKNDALYADKARQVSELAVDLVELLREEPLEKLA 649
Query: 125 DKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSVKEPE 184
+G+ K+ +H C K+ + ++ +L L ++ CCG GT+++ P+
Sbjct: 650 IRGDK-KLAFHCPCTLQHAQKLNGEVEKVLLRL-GFTLTDVPDSHLCCGSAGTYALTHPD 707
Query: 185 ISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTA 219
++ + K+ +ES + ++IV+A+ GC ++++A
Sbjct: 708 LARQLRDNKMNALESGKPEMIVTANIGCQTHLASA 742
>sp|P52074|GLCF_ECOLI Glycolate oxidase iron-sulfur subunit
gb|AAB02532.1| (L43490) glycolate oxidase subunit, (Fe-S)protein [Escherichia
coli]
Length = 407
Score = 55.5 bits (132), Expect = 5e-07
Identities = 43/215 (20%), Positives = 94/215 (43%), Gaps = 6/215 (2%)
Query: 9 CLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYNIKLY-- 66
C + N + ++L + + V+ + CCG Y+ E+ NI +
Sbjct: 176 CAQPTLSPNTNAATARVLDRLGISVMPANEAGCCGAVDYHLNAQEKGLARARNNIDAWWP 235
Query: 67 -SNNDYPIILPSGSCTGMMRHDYLELFEGHAEF-NMVKDFCSRVYELSEFLDKKLQVKYE 124
IL + S G +Y ++ + A + + + +L E L ++ K
Sbjct: 236 AIEAGAEAILQTASGCGAFVKEYGQMLKNDALYADKARQVSELAVDLVELLREEPLEKLA 295
Query: 125 DKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSVKEPE 184
+G+ K+ +H C K+ + ++ +L L ++ CCG GT+++ P+
Sbjct: 296 IRGDK-KLAFHCPCTLQHAQKLNGEVEKVLLRL-GFTLTDVPDSHLCCGSAGTYALTHPD 353
Query: 185 ISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTA 219
++ + K+ +ES + ++IV+A+ GC ++++A
Sbjct: 354 LARQLRDNKMNALESGKPEMIVTANIGCQTHLASA 388
>ref|NP_254040.1| (NC_002516) glycolate oxidase subunit GlcF [Pseudomonas aeruginosa]
pir||C82977 glycolate oxidase subunit GlcF PA5353 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG08738.1|AE004947_8 (AE004947) glycolate oxidase subunit GlcF [Pseudomonas aeruginosa]
Length = 408
Score = 53.9 bits (128), Expect = 1e-06
Identities = 48/224 (21%), Positives = 92/224 (40%), Gaps = 24/224 (10%)
Query: 9 CLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYNIKLY-- 66
C+ A+ N + A ++L + + V CCG ++ E ++ NI +
Sbjct: 176 CVQPALSPNTNAAAARVLDRLGISVTPAAAAGCCGALDFHLDAQERGRQRARRNIDAWWP 235
Query: 67 -SNNDYPIILPSGSCTGMMRHDYLELFEGHAEF-NMVKDFCSRVYELSEFLDKKLQVKYE 124
I+ + S G DY L + + ++ + +L E L
Sbjct: 236 LLREGAEAIVQTASGCGAFVKDYAYLLRDDPRYADKAREVAAAARDLVEVL--------- 286
Query: 125 DKGEPL---------KITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFG 175
+ EPL ++ +H C ++ + + ++R+L L E+ CCG
Sbjct: 287 -RDEPLESLGLRCDQRLAFHCPCTLQHAQRLGGAVEAVLRRL-GFHLTEVADGHLCCGSA 344
Query: 176 GTFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTA 219
GT+S+ +P +S + ++ +ES DVIV+A+ GC ++ A
Sbjct: 345 GTYSLTQPALSQRLRDNRLDALESGAPDVIVTANVGCQAHLDGA 388
>ref|NP_246379.1| (NC_002663) GlpC [Pasteurella multocida]
gb|AAK03524.1| (AE006180) GlpC [Pasteurella multocida]
Length = 426
Score = 52.8 bits (125), Expect = 3e-06
Identities = 48/212 (22%), Positives = 93/212 (43%), Gaps = 18/212 (8%)
Query: 15 YSNASLNA--IKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYNI----KLYSN 68
Y+N L I++ ++ V+ + + CCG P +G+ + KK +N+ K
Sbjct: 200 YNNPQLGKELIQVFNALDIGVMLLEKEKCCGLPLSVNGFPQRAKKQAEFNLKYLGKTIDE 259
Query: 69 NDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQV--KYEDK 126
++ S SCT +R +Y + + V+ V+ ++ +L + +Q ++ K
Sbjct: 260 RGLEVVGTSSSCTMNLRDEYHHIL--GMDNQKVR---PHVHIVTRYLYQLIQQGRQFPFK 314
Query: 127 GEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSVKEP--E 184
PL+I +H+ CH + A +++Q+ +E++ L +CCG GT+ K +
Sbjct: 315 TLPLRIAYHTACH-VEKAGWAPYTLAVLKQIPGIEIVML--PSQCCGIAGTYGFKSEHYD 371
Query: 185 ISAVMVKEKIKNIESRQVDVIVSADAGCLMNI 216
++ + I D IVS C I
Sbjct: 372 VAQAIGNPLFDLINQGGFDYIVSECETCKWQI 403
>ref|NP_613857.1| (NC_003551) Heterodisulfide reductase, subunit B [Methanopyrus
kandleri AV19]
gb|AAM01787.1| (AE010351) Heterodisulfide reductase, subunit B [Methanopyrus
kandleri AV19]
Length = 305
Score = 52.4 bits (124), Expect = 4e-06
Identities = 54/244 (22%), Positives = 96/244 (39%), Gaps = 37/244 (15%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEET-KKVVL 60
K+ FF C+ Y + + E+V +CC P + +T +
Sbjct: 4 KLCFFLGCIMPNRYPGIEKATRLVFEELGYELVDMDGASCCPAPGVFGSFDLKTWVTIAA 63
Query: 61 YNIKLYSNNDYPIILPSGSCTG--------MMRHDYLELF--EGHAEFNMVKDFCSRVYE 110
N+ + Y I+ C G + + L F E AE + +VY
Sbjct: 64 RNLSIAEEKGYDILTVCNGCFGSLNEANHLLQENPELREFVNEKLAEIDREYKGKVKVYH 123
Query: 111 LSEFLDKKLQVKY----------EDKGEPLKITWHSNCHALRVAKV------IDSAKNL- 153
++ FL +++ VK + GEPLK+ H CH L+ ++V ++ + L
Sbjct: 124 VNTFLYEEVGVKKIKEKVERPLEKTDGEPLKVAVHYGCHLLKPSEVTGFPGSVEDPRTLD 183
Query: 154 -IRQLKNVELIELEKEEECCGFGGTFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGC 212
+ + E ++ + + CCG GG +E ++S +EKI N ++ A A C
Sbjct: 184 ELVEALGAESVDYKDKIMCCGAGGGVRSRELKVSLHFTREKIFN--------MLEAGADC 235
Query: 213 LMNI 216
N+
Sbjct: 236 TTNV 239
>ref|NP_559191.1| (NC_003364) glycolate oxidase subunit glcF [Pyrobaculum aerophilum]
gb|AAL63373.1| (AE009813) glycolate oxidase subunit glcF [Pyrobaculum aerophilum]
Length = 386
Score = 52.0 bits (123), Expect = 6e-06
Identities = 42/199 (21%), Positives = 89/199 (44%), Gaps = 22/199 (11%)
Query: 22 AIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYNIKLYS--NNDYPIILPSGS 79
AI++L EVV + +CCG P +SG +E+ +++ N+K+ + D + SG
Sbjct: 174 AIRVLTWNGYEVVVPRF-SCCGAPYRHSGQFEKAEELARRNLKIAEKLSVDAIAVPNSGG 232
Query: 80 CTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQVKYEDKGE-PLKITWHSNC 138
C + ++D RV ++ + + L+ + GE +++ +C
Sbjct: 233 CQAEL-------------LRYMRD--RRVVDVMQLIAHDLR---GNLGEVKMRLAVQHSC 274
Query: 139 HALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSVKEPEISAVMVKEKIKNIE 198
H + AK D + ++ + L L + CCG G + ++ +I+ +++ K ++
Sbjct: 275 HLMNAAKAHDVVLKPLYKVPGLVLTPLPSADVCCGGGNMYPLRHRDIANAILERKRDEVK 334
Query: 199 SRQVDVIVSADAGCLMNIS 217
+ D ++ CL +S
Sbjct: 335 AVSPDGVLIESPSCLQQLS 353
>ref|NP_343974.1| (NC_002754) Glycerol-3-phosphate dehydrogenase chain C (anaerobic)
(glpC) [Sulfolobus solfataricus]
gb|AAK42764.1| (AE006859) Glycerol-3-phosphate dehydrogenase chain C (anaerobic)
(glpC) [Sulfolobus solfataricus]
Length = 395
Score = 51.2 bits (121), Expect = 1e-05
Identities = 41/144 (28%), Positives = 68/144 (46%), Gaps = 18/144 (12%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
+V F TCL + + +++ + +EV+ + CCG P +SG + KK Y
Sbjct: 169 RVALFPTCLIENFFPEIGEDLVEIYNELGIEVIIP-NFVCCGAPMLDSGDVDRLKKNAEY 227
Query: 62 NIKLYSN---NDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKD-FCSRVYELSEFLDK 117
NIK+ + Y ++ P +CT M++ E+ V D +VY+ E+L K
Sbjct: 228 NIKIIEDLIKEGYDVVSPIPTCTLMIK-----------EYKKVLDREVPKVYDAMEYLLK 276
Query: 118 -KLQVKYEDKGEPLK-ITWHSNCH 139
K + K E KG+ K + +H CH
Sbjct: 277 LKNEGKIELKGKIEKSVYYHPPCH 300
>ref|NP_344471.1| (NC_002754) Glycolate oxidase iron-sulfur subunit. (glcF)
[Sulfolobus solfataricus]
gb|AAK43261.1| (AE006905) Glycolate oxidase iron-sulfur subunit. (glcF)
[Sulfolobus solfataricus]
Length = 344
Score = 51.2 bits (121), Expect = 1e-05
Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 27/214 (12%)
Query: 6 FATCLGAAIYSNASLNAIKLL-RKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYNIK 64
F C+ + I+ A K L +K ++++ CCG ++G YE KK+ + +
Sbjct: 139 FPGCIESVIFRKTVEKAYKYLGKKYKVKII----NGCCGLAHISNGNYEGAKKLAIRLAE 194
Query: 65 LYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKK-LQV-K 122
+I +C M+ +Y E F E N Y+ +EFL K+ +++ K
Sbjct: 195 KVKGKK--VITLQSNCAAFMK-EYKEWFG--IEIN--------AYDFAEFLIKEGIELPK 241
Query: 123 YEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSVKE 182
D T H CHA R K++ +N+ ++ +++ E+E CG GG + +
Sbjct: 242 VNDT-----FTVHYPCHAYR-QKLVSHIRNVAEKM-GIKIREMEDPHFECGAGGDYWLSH 294
Query: 183 PEISAVMVKEKIKNIESRQVDVIVSADAGCLMNI 216
P++S +++ K I + ++ ++ C + I
Sbjct: 295 PKLSDMVMNVKRGKIAKSEAKKVIVTNSVCALAI 328
>ref|NP_282713.1| (NC_002163) putative oxidoreductase [Campylobacter jejuni]
pir||G81253 probable oxidoreductase Cj1585c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73573.1| (AL139079) putative oxidoreductase [Campylobacter jejuni]
Length = 923
Score = 50.8 bits (120), Expect = 1e-05
Identities = 50/228 (21%), Positives = 100/228 (42%), Gaps = 33/228 (14%)
Query: 3 VNFFATCLGAAIYSNASLNAIK--------LLRKENLEVVFKKDQTCCGQPSYNSGYYEE 54
V +F +CL + N ++ + L +K N+ +++ + CCG+ +Y + +
Sbjct: 699 VVYFTSCLNKSFKPNEKMHDKRSLQEVFESLCKKANIGIIYAPNDLCCGK-AYENFQDIQ 757
Query: 55 TKKVVLYNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEF 114
K + N L SN D PI+L +C+ +L H+++ +Y+LSE+
Sbjct: 758 DKNIQKINDFL-SNIDSPIVLDHSACSA-------KLISDHSKYE--------IYDLSEY 801
Query: 115 LDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLK---NVELIELEKEEEC 171
L K + K KI + + + A+ + +N+I+ K N +++ ++ + C
Sbjct: 802 LLKFIAPKLRID----KINENVGLYIMCAARKLGLNENIIKLTKLCTNGKVL-IDNDTYC 856
Query: 172 CGFGGTFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTA 219
CGF G +P+++ K K + S + C + +S A
Sbjct: 857 CGFAGYKGFFKPQLNISATKGFKKFYAKTNIKRGFSTSSTCEIGLSDA 904
>ref|NP_378296.1| (NC_003106) 325aa long hypothetical protein [Sulfolobus tokodaii]
dbj|BAB67405.1| (AP000989) 325aa long hypothetical protein [Sulfolobus tokodaii]
Length = 325
Score = 50.8 bits (120), Expect = 1e-05
Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 34/236 (14%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
++ F C+ + + + L+ V K CCG N+G +K+++
Sbjct: 123 EIILFPGCITSIFFKETVQKTLNYLKSLGYRV--KIYNGCCGLAHKNAGELNRSKELIEK 180
Query: 62 NIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDK-KLQ 120
K + I+ S +C+ M+ + LE VY+ EF+ K L
Sbjct: 181 LRKEFHGRT--IVSLSSNCSAHMKENGLE-----------------VYDFPEFIIKFNLP 221
Query: 121 VKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSV 180
+ ++ ++T H CHA + + + ++ ++ VE+ E E+ CG GG + +
Sbjct: 222 LPKVER----RLTIHEPCHA-NILGLNKYTREVLSKM-GVEISESEEPSFECGAGGDYFL 275
Query: 181 KEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFL 236
EIS +++ K + V+ +VS + C S A KMG KP+H D L
Sbjct: 276 FHEEISEKVMQVKKEKTLKSGVNTVVSTNPSC----SLAFIKMG--LKPIHIADLL 325
>pir||S78509 heterodisulfide reductase (EC 1.97.1.-) chain B - Methanobacterium
thermoautotrophicum (strain Marburg)
emb|CAA57038.1| (X81133) heterodisulfide reductase [Methanothermobacter
thermautotrophicus]
Length = 302
Score = 48.9 bits (115), Expect = 5e-05
Identities = 49/245 (20%), Positives = 95/245 (38%), Gaps = 22/245 (8%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEET-KKVV 59
M++ +F C+ Y L K +E+ + +CC P + + T +
Sbjct: 1 MEIAYFLGCIMNNRYPGIEKATRVLFDKLGIELKDMEGASCCPAPGVFGSFDKTTWAAIA 60
Query: 60 LYNIKLYSNNDYPIILPSGSCTGMM---RHDYLELFEGHAEFNMVKDFCSRVYELSEFLD 116
NI + + I+ C G + H E E A+ N + R Y+ +
Sbjct: 61 ARNITIAEDMGADIMTECNGCFGSLFETNHLLKEDEEMKAKINEILKETGREYKGEVNVR 120
Query: 117 KKLQVKYEDKG---------EPLK--ITWHSNCHALRVAKVID-------SAKNLIRQLK 158
+V Y D G +PL + H CH L+ + I+ + + I ++
Sbjct: 121 HFAEVLYNDVGLDKLSELVEKPLNLNVAVHYGCHFLKPSDEINIDNPERPTILDEIVEVT 180
Query: 159 NVELIELEKEEECCGFGGTFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNIST 218
+ +E + + CCG GG ++ +++ +EK+ N++ VD IV+ C +
Sbjct: 181 GAKSVEYKDKMMCCGAGGGVRSRDLDVALDFTREKLTNMKEAGVDAIVNVCPFCHLQFDV 240
Query: 219 AMQKM 223
++
Sbjct: 241 GQMEI 245
>ref|NP_561496.1| (NC_003366) probable iron-sulfur binding reductase [Clostridium
perfringens]
dbj|BAB80286.1| (AP003187) probable iron-sulfur binding reductase [Clostridium
perfringens]
Length = 376
Score = 47.8 bits (112), Expect = 1e-04
Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 41/233 (17%)
Query: 15 YSNASLNAIKLLRKENL---EVVFKKDQTCCGQPSYNSG---YYEETKKVVLYNIKLYSN 68
Y+N + IK ENL E++ K CCG+PS + G +E + N+K+
Sbjct: 138 YNNEIIFKIKDYLIENLGEVEILLK----CCGKPSKDIGNLELFESNLNDIENNLKIKEV 193
Query: 69 NDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYE-LSEF-LDKKLQVKYEDK 126
++ II+ +C Y + ++ ++E ++EF + K+L+ KY D
Sbjct: 194 DE--IIVACENC-------YKTFGSAFKDIKVIT-----LWEVINEFGVPKELKNKYSDL 239
Query: 127 GEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEE---ECCGFGGTFSVKEP 183
E + H C + ++ ++ +++++ L ++++E EK ECCG GG V
Sbjct: 240 KEEFAL--HDPCPIKKEEQIHEAVRSILKDL-GIKIVEFEKNRSKTECCGCGGMVGVTNK 296
Query: 184 EISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFL 236
E+ + +K + S + + IVS C+ + S +H DF+
Sbjct: 297 EL---WLSQKNERANSTECENIVSYCESCVNTFKS------SDKNALHILDFI 340
>ref|NP_662030.1| (NC_002932) oxidoreductase, FAD-binding [Chlorobium tepidum TLS]
gb|AAM72372.1| (AE012875) oxidoreductase, FAD-binding [Chlorobium tepidum TLS]
Length = 1160
Score = 47.0 bits (110), Expect = 2e-04
Identities = 53/231 (22%), Positives = 95/231 (40%), Gaps = 33/231 (14%)
Query: 3 VNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYN 62
V +F C ++S S+ AI +L + VV CCG P + E +VL N
Sbjct: 913 VFYFPGCGSERLHSTISMAAIHILLETGTRVVLPPPFLCCGFPLNVNAKEEAYTSIVLRN 972
Query: 63 I-------KLYSNNDY-PIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEF 114
+++S D+ ++ G+C EG + K F +R+ ++S +
Sbjct: 973 TVMFSQIREMFSYLDFDACVISCGTC-----------MEGLEVMDAPKLFGNRIVDVSRY 1021
Query: 115 -LDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCG 173
+K ++V G + +H+ CH K D L+R + ++ CC
Sbjct: 1022 AYEKGMRV----DGGSTQSLYHAPCHDSLKGKACD----LLRDVGGFG--KVTNVPHCCS 1071
Query: 174 FGGTFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMG 224
GT ++ P+I+ M+ K E+ + + A A L N + +Q +G
Sbjct: 1072 EAGTLALSRPDITDSMLHRK---REALKESMHGEATATILTNCPSCVQGLG 1119
>ref|NP_276985.1| (NC_000916) heterodisulfide reductase, subunit B
[Methanothermobacter thermautotrophicus]
[Methanothermobacter thermautotrophicus str. Delta H]
pir||D69118 heterodisulfide reductase (EC 1.97.1.-) chain B - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB86345.1| (AE000940) heterodisulfide reductase, subunit B
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 302
Score = 46.2 bits (108), Expect = 3e-04
Identities = 45/245 (18%), Positives = 94/245 (38%), Gaps = 22/245 (8%)
Query: 1 MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEET-KKVV 59
M++ +F C+ Y L K +E+ + CC P + + T +
Sbjct: 1 MEIAYFLGCIMNNRYPGIEKATRVLFDKLGIELKDMEGAFCCPAPGVFGSFDKTTWAAIA 60
Query: 60 LYNIKLYSNNDYPIILPSGSCTGMM---RHDYLELFEGHAEFNMVKDFCSRVYELSEFLD 116
NI + ++ C G + H E E A+ N + R Y+ +
Sbjct: 61 ARNITIAEEMGSDVMTECNGCFGSLFEANHLLKEDEEMRAKINEILKEAGREYKGEINVR 120
Query: 117 KKLQVKYEDKG---------EPLK--ITWHSNCHALRVAKVID-------SAKNLIRQLK 158
++ Y D G +PL + H CH L+ ++ I+ + + + ++
Sbjct: 121 HLAEILYNDVGLDKLSEVVEKPLNLNVAVHYGCHFLKPSEEINIDNPERPTILDELVEVT 180
Query: 159 NVELIELEKEEECCGFGGTFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNIST 218
+ ++ + + CCG GG ++ +++ EK++N++ VD IV+ C +
Sbjct: 181 GAKSVDYKDKMMCCGAGGGVRSRDLDVALDFTMEKLRNMKEAGVDAIVNVCPFCHLQFDV 240
Query: 219 AMQKM 223
++
Sbjct: 241 GQMEI 245
>ref|NP_283972.1| (NC_003116) putative oxidoreductase [Neisseria meningitidis Z2491]
pir||G81888 probable oxidoreductase NMA1206 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84467.1| (AL162755) putative oxidoreductase [Neisseria meningitidis Z2491]
Length = 1277
Score = 45.4 bits (106), Expect = 5e-04
Identities = 46/235 (19%), Positives = 94/235 (39%), Gaps = 30/235 (12%)
Query: 3 VNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYN 62
V +F C ++S L +L ++ V CCG P G + +++ N
Sbjct: 1022 VFYFPGCGSERLFSQIGLAVQAMLWHVGVQTVLPPGYMCCGYPQDAGGNKAKAEEMSTNN 1081
Query: 63 I----KLYSNNDY----PIILPSGSCTGMM-RHDYLELFEGHAEFNMVKDFCSRVYELSE 113
++ + +Y +++ G+C + ++ + E+F G R+ ++ E
Sbjct: 1082 RVAFHRMANTLNYLDIKTVVVSCGTCYDQLEKYRFEEIFPG-----------CRIIDIHE 1130
Query: 114 FLDKKLQVKYEDKGEPLKITWHSNCHA-LRVAKVIDSAKNLIRQLKNVELIELEKEEECC 172
+L +K KG+ + +H CH ++ A +L+ Q ++ + CC
Sbjct: 1131 YLLEKGVKLNGVKGQ--QYLYHDPCHTPIKTMNATQMASSLMGQ-------KVVLSDRCC 1181
Query: 173 GFGGTFSVKEPEISAVMVKEKIKNIESRQVDVIVSADAGCLMNISTAMQKMGSLT 227
G G F+VK P+I+ + K + IE ++ L + +Q + T
Sbjct: 1182 GESGMFAVKRPDIATQVKFRKQEEIEKNLKELPQGEPVKMLTSCPACLQGLSRYT 1236
>ref|NP_274034.1| (NC_003112) oxidoreductase, putative [Neisseria meningitidis MC58]
pir||F81132 oxidoreductase, probable NMB0998 [imported] - Neisseria meningitidis
(group B strain MD58)
gb|AAF41401.1| (AE002451) oxidoreductase, putative [Neisseria meningitidis MC58]
Length = 1277
Score = 45.1 bits (105), Expect = 7e-04
Identities = 45/207 (21%), Positives = 89/207 (42%), Gaps = 32/207 (15%)
Query: 3 VNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYN 62
V +F C ++S L +L ++ V CCG P G + +++ N
Sbjct: 1022 VFYFPGCGSERLFSQIGLAVQAMLWHVGVQTVLPPGYMCCGYPQDAGGNKAKAEEMSTNN 1081
Query: 63 I----KLYSNNDY----PIILPSGSCTGMM-RHDYLELFEGHAEFNMVKDFCSRVYELSE 113
++ + +Y +++ G+C + ++ + E+F G R+ ++ E
Sbjct: 1082 RVAFHRMANTLNYLDIKTVVVSCGTCYDQLEKYRFEEIFPG-----------CRIIDIHE 1130
Query: 114 FLDKKLQVKYED-KGEPLKITWHSNCHA-LRVAKVIDSAKNLIRQLKNVELIELEKEEEC 171
+L +K VK + KG+ + +H CH ++ A +L+ Q ++ + C
Sbjct: 1131 YLLEK-GVKLDGVKGQ--QYLYHDPCHTPIKTMNATQMASSLMGQ-------KVVLSDRC 1180
Query: 172 CGFGGTFSVKEPEISAVMVKEKIKNIE 198
CG G F+VK P+I+ + K + IE
Sbjct: 1181 CGESGMFAVKRPDIATQVKFRKQEEIE 1207
>ref|NP_070822.1| (NC_000917) iron-sulfur binding reductase [Archaeoglobus fulgidus]
pir||E69499 iron-sulfur binding reductase homolog - Archaeoglobus fulgidus
gb|AAB89258.1| (AE000965) iron-sulfur binding reductase [Archaeoglobus fulgidus]
Length = 354
Score = 44.7 bits (104), Expect = 9e-04
Identities = 47/219 (21%), Positives = 95/219 (42%), Gaps = 38/219 (17%)
Query: 16 SNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYNIKLYSNNDY---P 72
++ + A +LL + +++ CCG G EE +L + + +Y
Sbjct: 137 ADVARKAGELLEAAGVNFAILREEGCCGNDVKAVG--EEGLFELLREENMATFEEYGVKK 194
Query: 73 IILPSGSCTGMMRHDY-LELFEGHAEFNMVKDFCSRVYELSEFLDKKLQ---VKYEDKGE 128
+I+ S C ++DY LE VY +SE L K ++ +++ E
Sbjct: 195 VIVISPHCYNTFKNDYGLE-----------------VYHISEILLKAIEEARIRFRKVIE 237
Query: 129 PLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEE---CCGFGGTFSVKEPEI 185
++ +H +C+ R + + + ++R + +EL+E+ + E CCG GG V++ E
Sbjct: 238 A-RVAFHDSCYLGRYNGLYEEPREVLRAIPGIELVEMLRNRENSLCCGAGGGNIVRDVEF 296
Query: 186 SAVMVKEKIKNIESRQV---DVIVSADAGCLMNISTAMQ 221
+ +K I+ + + + A CLM + A++
Sbjct: 297 -----RPSLKRIDEAGIVAAEFLAVACPFCLMMLEDAVK 330
>ref|NP_280668.1| (NC_002607) glycerol-3-phosphate dehydrogenase chain C; GpdC
[Halobacterium sp. NRC-1]
gb|AAG20148.1| (AE005092) glycerol-3-phosphate dehydrogenase chain C; GpdC
[Halobacterium sp. NRC-1]
Length = 465
Score = 44.7 bits (104), Expect = 9e-04
Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 19/226 (8%)
Query: 2 KVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLY 61
KV +F C +++ E+V K Q C G P + +G ++ ++
Sbjct: 227 KVAYFHGCYANYNTPEVGQAMVRVYEHFGYEIVVPK-QGCSGTPMFANGMLDDARRHADI 285
Query: 62 NIKLYSN---NDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEF---- 114
+ S+ Y I SC+ +R +Y ELF + + ++ S +E E+
Sbjct: 286 TVSSMSDLIEEGYDAIASCTSCSMALRQEYPELF----DIDGIETVASNTFEAVEYLRIH 341
Query: 115 --LDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECC 172
L + +Q D + +H+ CHA R + A L L V + ++ + C
Sbjct: 342 EPLRETVQSADIDGELADEFAYHAPCHA-RSQGLDRQAVELFGDLDGVGIDDV--GDSCS 398
Query: 173 GFGGTFSVKEP--EISAVMVKEKIKNIESRQVDVIVSADAGCLMNI 216
G GT+ KE E S + + ++ES + D ++ C M +
Sbjct: 399 GISGTYGWKEEKYETSMEIGDDMFDHMESAEGDTGLTECPTCAMQM 444
>ref|NP_223861.1| (NC_000921) D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
pir||A71843 d-lactate dehydrogenase - Helicobacter pylori (strain J99)
gb|AAD06729.1| (AE001542) D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 42.0 bits (97), Expect = 0.006
Identities = 41/197 (20%), Positives = 87/197 (43%), Gaps = 26/197 (13%)
Query: 2 KVNFFATCLGAAIYSNASLNAIK--------LLRKENLEVVFKK--DQTCCGQP--SYNS 49
KV +F+TC+ + + + + L +K + VV+ + CCG+ +Y +
Sbjct: 714 KVIYFSTCINRSFAPSTKMADKRCIQEVFESLCQKAKVSVVYPNGLNALCCGKAFINYTA 773
Query: 50 GYYEETKKVVLYNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVY 109
+ +K ++L PI+L +C+ +++ + + + +VY
Sbjct: 774 LTKQNNEKNHAIFLQLSDEGKIPIVLDHSACST----HFIKQMKAYKDL--------KVY 821
Query: 110 ELSEFLDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEE 169
+LS ++++ L K + I ++ C AL++ + NL ++ E++ + KE
Sbjct: 822 DLSVYIEEVLSPKLKFNPINEDIGLYTMC-ALKLENKEELLLNLAKKCTLGEIV-IHKET 879
Query: 170 ECCGFGGTFSVKEPEIS 186
CCGF G PE++
Sbjct: 880 GCCGFAGNKGFFTPELN 896
>ref|NP_391599.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|P45866|YWJF_BACSU Hypothetical protein ywjF
pir||S55420 conserved hypothetical protein ywjF - Bacillus subtilis
emb|CAA89867.1| (Z49782) ywjF [Bacillus subtilis]
emb|CAB15746.1| (Z99123) similar to hypothetical proteins [Bacillus subtilis]
Length = 705
Score = 42.0 bits (97), Expect = 0.006
Identities = 19/56 (33%), Positives = 32/56 (56%), Gaps = 3/56 (5%)
Query: 132 ITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEE---CCGFGGTFSVKEPE 184
IT+H +C+ R +V D + +++ + V+L+E+E+ E CCG GG E E
Sbjct: 581 ITFHDSCYLGRYNEVYDPPREILKAIPGVQLVEMERSRETGMCCGAGGGLMWMEEE 636
>ref|NP_663020.1| (NC_002932) iron-sulfur cluster-binding protein [Chlorobium tepidum
TLS]
gb|AAM73362.1| (AE012963) iron-sulfur cluster-binding protein [Chlorobium tepidum
TLS]
Length = 662
Score = 41.6 bits (96), Expect = 0.008
Identities = 42/197 (21%), Positives = 78/197 (39%), Gaps = 29/197 (14%)
Query: 37 KDQTCCGQPSYNSGYYEETKKVVLYNIK-LYSNNDYPIILPSGSCTGMMRHDYLEL---- 91
K + CCG+P+ G + V NI + + I+ C + DY EL
Sbjct: 461 KAERCCGEPARKLGNEYLYRMVAGSNIAAIRAAKVKRIVTACPHCFNTLVRDYRELGLDV 520
Query: 92 -FEGHAEF--NMVKDFCSRVYELSEFLDKKLQVKYEDKGEPLKITWHSNCHALRVAKVID 148
E H+ F +V + ++++ E T+H +C+ R +I+
Sbjct: 521 PVEHHSTFIRRLVGEGRLKLHQ-----------------ESFSATYHDSCYLARYQDIIE 563
Query: 149 SAKNLIRQLKNVELIELE---KEEECCGFGGTFSVKEPEISAVMVKEKIKNIESRQVDVI 205
A L+ + L E+E E CCG GG + E ++ +V E+++ + +
Sbjct: 564 -APRLVLEAAGGRLTEMEWSGSETFCCGAGGGRILAEEKLGMPIVDERLRMAKMAGASTV 622
Query: 206 VSADAGCLMNISTAMQK 222
+A CL +++
Sbjct: 623 ATACPFCLSMFEDGLKR 639
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,469,357
Number of Sequences: 1026957
Number of extensions: 5822032
Number of successful extensions: 15276
Number of sequences better than 1.0e-02: 78
Number of HSP's better than 0.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 15139
Number of HSP's gapped (non-prelim): 86
length of query: 242
length of database: 324,149,939
effective HSP length: 118
effective length of query: 124
effective length of database: 202,969,013
effective search space: 25168157612
effective search space used: 25168157612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 95 (41.2 bits)