BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645994|ref|NP_208175.1| hypothetical protein
[Helicobacter pylori 26695]
         (68 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208175.1|  (NC_000915) hypothetical protein [Helicoba...   141  2e-33
ref|NP_224159.1|  (NC_000921) putative [Helicobacter pylori ...   129  1e-29
ref|NP_282000.1|  (NC_002163) hypothetical protein Cj0839c [...    59  2e-08

>ref|NP_208175.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64692 hypothetical protein HP1384 - Helicobacter pylori (strain 26695)
 gb|AAD08431.1| (AE000638) H. pylori predicted coding region HP1384 [Helicobacter
          pylori 26695]
          Length = 68

 Score =  141 bits (355), Expect = 2e-33
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MMQNSVKKLEYEERFNDALLKLQACQEEKQVTSCLKCEQVLNCKIRNSYVDAAYESMSLG 60
          MMQNSVKKLEYEERFNDALLKLQACQEEKQVTSCLKCEQVLNCKIRNSYVDAAYESMSLG
Sbjct: 1  MMQNSVKKLEYEERFNDALLKLQACQEEKQVTSCLKCEQVLNCKIRNSYVDAAYESMSLG 60

Query: 61 ERGGFDFN 68
          ERGGFDFN
Sbjct: 61 ERGGFDFN 68



>ref|NP_224159.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71808 hypothetical protein jhp1441 - Helicobacter pylori (strain J99)
 gb|AAD07013.1| (AE001566) putative [Helicobacter pylori J99]
          Length = 67

 Score =  129 bits (323), Expect = 1e-29
 Identities = 62/67 (92%), Positives = 63/67 (93%)

Query: 2  MQNSVKKLEYEERFNDALLKLQACQEEKQVTSCLKCEQVLNCKIRNSYVDAAYESMSLGE 61
          MQNS KKLEYEERFN ALLKLQACQEEKQV SCLKCE+VLNCKIRNSYVDAAYESMSLGE
Sbjct: 1  MQNSTKKLEYEERFNAALLKLQACQEEKQVASCLKCEKVLNCKIRNSYVDAAYESMSLGE 60

Query: 62 RGGFDFN 68
           GGFDFN
Sbjct: 61 AGGFDFN 67



>ref|NP_282000.1| (NC_002163) hypothetical protein Cj0839c [Campylobacter jejuni]
 pir||G81356 hypothetical protein Cj0839c [imported] - Campylobacter jejuni
          (strain NCTC 11168)
 emb|CAB73104.1| (AL139076) hypothetical protein Cj0839c [Campylobacter jejuni]
          Length = 65

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 10 EYEERFNDALLKLQACQEEKQVTSCLKCEQVLNCKIRNSYVDAAYESMSLGE-RGGFDF 67
          E+E+  +     L +CQ  K + SC  C+++ NC+ R +YVDA Y SMS G+  GGFDF
Sbjct: 7  EFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRKNYVDAVYNSMSKGKTEGGFDF 65



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.317    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,484,155
Number of Sequences: 1026957
Number of extensions: 1111288
Number of successful extensions: 2798
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2795
Number of HSP's gapped (non-prelim): 3
length of query: 68
length of database: 324,149,939
effective HSP length: 44
effective length of query: 24
effective length of database: 278,963,831
effective search space: 6695131944
effective search space used: 6695131944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 91 (39.7 bits)