BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645999|ref|NP_208180.1| hypothetical protein
[Helicobacter pylori 26695]
         (60 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208180.1|  (NC_000915) hypothetical protein [Helicoba...   126  6e-29
ref|NP_208179.1|  (NC_000915) hypothetical protein [Helicoba...    52  2e-06

>ref|NP_208180.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64693 hypothetical protein HP1389 - Helicobacter pylori (strain 26695)
 gb|AAD08437.1| (AE000639) H. pylori predicted coding region HP1389 [Helicobacter
          pylori 26695]
          Length = 60

 Score =  126 bits (316), Expect = 6e-29
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1  MMTEETYEAYLDTNIKQLEEVRNQKLNKALELCKQSGLFLRKFDGKNFSFECDEPNRSKP 60
          MMTEETYEAYLDTNIKQLEEVRNQKLNKALELCKQSGLFLRKFDGKNFSFECDEPNRSKP
Sbjct: 1  MMTEETYEAYLDTNIKQLEEVRNQKLNKALELCKQSGLFLRKFDGKNFSFECDEPNRSKP 60



>ref|NP_208179.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64693 hypothetical protein HP1388 - Helicobacter pylori (strain 26695)
 gb|AAD08430.1| (AE000638) H. pylori predicted coding region HP1388 [Helicobacter
           pylori 26695]
          Length = 149

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 31/66 (46%), Positives = 33/66 (49%), Gaps = 13/66 (19%)

Query: 8   EAYLDTNI---KQLEEVRNQK----------LNKALELCKQSGLFLRKFDGKNFSFECDE 54
           E   DT I   K L+E R QK            K LE CKQ    L+KFD  NFSFECDE
Sbjct: 49  EVKRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEFCKQQNRVLKKFDSTNFSFECDE 108

Query: 55  PNRSKP 60
           P   KP
Sbjct: 109 PATKKP 114



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.314    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,488,583
Number of Sequences: 1026957
Number of extensions: 1080753
Number of successful extensions: 2496
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2494
Number of HSP's gapped (non-prelim): 2
length of query: 60
length of database: 324,149,939
effective HSP length: 36
effective length of query: 24
effective length of database: 287,179,487
effective search space: 6892307688
effective search space used: 6892307688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 91 (39.7 bits)