BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646001|ref|NP_208182.1| hypothetical protein
[Helicobacter pylori 26695]
(98 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208182.1| (NC_000915) hypothetical protein [Helicoba... 194 2e-49
ref|NP_224154.1| (NC_000921) putative [Helicobacter pylori ... 192 8e-49
>ref|NP_208182.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64693 hypothetical protein HP1391 - Helicobacter pylori (strain 26695)
gb|AAD08439.1| (AE000639) H. pylori predicted coding region HP1391 [Helicobacter
pylori 26695]
Length = 98
Score = 194 bits (493), Expect = 2e-49
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MGVSALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDKD 60
MGVSALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDKD
Sbjct: 1 MGVSALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDKD 60
Query: 61 PKEGSKNRYQNSQRAKAFGLEEEEIELWHEEHLLDIVG 98
PKEGSKNRYQNSQRAKAFGLEEEEIELWHEEHLLDIVG
Sbjct: 61 PKEGSKNRYQNSQRAKAFGLEEEEIELWHEEHLLDIVG 98
>ref|NP_224154.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71807 hypothetical protein jhp1436 - Helicobacter pylori (strain J99)
gb|AAD07017.1| (AE001566) putative [Helicobacter pylori J99]
Length = 98
Score = 192 bits (487), Expect = 8e-49
Identities = 97/98 (98%), Positives = 97/98 (98%)
Query: 1 MGVSALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDKD 60
MGVSALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDKD
Sbjct: 1 MGVSALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDKD 60
Query: 61 PKEGSKNRYQNSQRAKAFGLEEEEIELWHEEHLLDIVG 98
PKEGSKNRY NSQRAKAFGLEEEEIELWHEEHLLDIVG
Sbjct: 61 PKEGSKNRYPNSQRAKAFGLEEEEIELWHEEHLLDIVG 98
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.309 0.126 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,124,129
Number of Sequences: 1026957
Number of extensions: 1698415
Number of successful extensions: 4860
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4858
Number of HSP's gapped (non-prelim): 2
length of query: 98
length of database: 324,149,939
effective HSP length: 74
effective length of query: 24
effective length of database: 248,155,121
effective search space: 5955722904
effective search space used: 5955722904
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 90 (39.3 bits)