BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646006|ref|NP_208187.1| hypothetical protein
[Helicobacter pylori 26695]
(288 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208187.1| (NC_000915) hypothetical protein [Helicoba... 597 e-170
ref|NP_224149.1| (NC_000921) putative [Helicobacter pylori ... 439 e-122
ref|NP_207224.1| (NC_000915) hypothetical protein [Helicoba... 181 1e-44
ref|NP_224020.1| (NC_000921) putative [Helicobacter pylori ... 123 3e-27
ref|NP_563071.1| (NC_003366) conserved hypothetical protein... 69 6e-11
ref|NP_290966.1| (NC_002655) orf; conserved hypothetical pr... 65 7e-10
ref|NP_469682.1| (NC_003212) similar to unknown protein [Li... 52 1e-05
ref|NP_463839.1| (NC_003210) similar to unknown protein [Li... 43 0.004
>ref|NP_208187.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64694 hypothetical protein HP1396 - Helicobacter pylori (strain 26695)
gb|AAD08441.1| (AE000639) H. pylori predicted coding region HP1396 [Helicobacter
pylori 26695]
Length = 288
Score = 597 bits (1539), Expect = e-170
Identities = 288/288 (100%), Positives = 288/288 (100%)
Query: 1 MEKELVTWFNILNKPPLEYLKGVEDFYNAYGEVLEMQDRHAHLLSYKDDDYLHVILCASI 60
MEKELVTWFNILNKPPLEYLKGVEDFYNAYGEVLEMQDRHAHLLSYKDDDYLHVILCASI
Sbjct: 1 MEKELVTWFNILNKPPLEYLKGVEDFYNAYGEVLEMQDRHAHLLSYKDDDYLHVILCASI 60
Query: 61 LHHYSDQDIETLKELLVKFYYQDWVAGQTKTTRSQTCCNIINVLKEKKSMDYITSIVKEY 120
LHHYSDQDIETLKELLVKFYYQDWVAGQTKTTRSQTCCNIINVLKEKKSMDYITSIVKEY
Sbjct: 61 LHHYSDQDIETLKELLVKFYYQDWVAGQTKTTRSQTCCNIINVLKEKKSMDYITSIVKEY 120
Query: 121 LDDKNITQRFKDNLKDSNLYTKFYFINGKTAKKNSWVKPILILVEYFMSDNANPACIKMD 180
LDDKNITQRFKDNLKDSNLYTKFYFINGKTAKKNSWVKPILILVEYFMSDNANPACIKMD
Sbjct: 121 LDDKNITQRFKDNLKDSNLYTKFYFINGKTAKKNSWVKPILILVEYFMSDNANPACIKMD 180
Query: 181 DDLHVERILPQNPDPSSQWMKDFSEEERGLYTHSLANLTLLGGKKNTKALSQALNQDFKE 240
DDLHVERILPQNPDPSSQWMKDFSEEERGLYTHSLANLTLLGGKKNTKALSQALNQDFKE
Sbjct: 181 DDLHVERILPQNPDPSSQWMKDFSEEERGLYTHSLANLTLLGGKKNTKALSQALNQDFKE 240
Query: 241 KKEIYMGKTIMLDNKKTFRVMTCYDMTKNDVCRYTEWTPTSLEKRKES 288
KKEIYMGKTIMLDNKKTFRVMTCYDMTKNDVCRYTEWTPTSLEKRKES
Sbjct: 241 KKEIYMGKTIMLDNKKTFRVMTCYDMTKNDVCRYTEWTPTSLEKRKES 288
>ref|NP_224149.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71806 hypothetical protein jhp1431 - Helicobacter pylori (strain J99)
gb|AAD07011.1| (AE001566) putative [Helicobacter pylori J99]
Length = 293
Score = 439 bits (1128), Expect = e-122
Identities = 222/287 (77%), Positives = 239/287 (82%), Gaps = 6/287 (2%)
Query: 1 MEKELVTWFNILNKPPLEYLKGVEDFYNAYGEVLEMQDRHAHLLSYKDDDYLHVILCASI 60
ME+ L F LNKPPLEY KGVE+FYNAY +VLEMQD HAHLLSY D+ VILC SI
Sbjct: 1 MEERLADQFERLNKPPLEYFKGVENFYNAYCKVLEMQDWHAHLLSYLASDFWRVILCTSI 60
Query: 61 LHHYSDQDIETLKELLVKFYYQDWVAGQTKTTRSQTCCNIINVLKEKKSMDYITSIVKEY 120
LHHYSDQDIETLKELLVKFYYQ+WVA + + + QT CNII LKE KS++ I SIVKEY
Sbjct: 61 LHHYSDQDIETLKELLVKFYYQNWVATREEP-KKQTNCNIIKALKENKSVESIASIVKEY 119
Query: 121 LDDKNITQRFKDNLKDSNLYTKFYFINGKTAKKNSWVKPILILVEYFMSDNANPACIKMD 180
LD ITQ FK NL+DS LY + K + KNSWVKP+LILVEY MSDNANPA IKMD
Sbjct: 120 LDYHKITQDFKKNLQDSKLYEQH-----KKSSKNSWVKPVLILVEYSMSDNANPAYIKMD 174
Query: 181 DDLHVERILPQNPDPSSQWMKDFSEEERGLYTHSLANLTLLGGKKNTKALSQALNQDFKE 240
DDLHVERILPQNPDPSSQW+KDFSEEER LYTHSLANLTLLGG KNTKALSQALNQDFKE
Sbjct: 175 DDLHVERILPQNPDPSSQWVKDFSEEERELYTHSLANLTLLGGTKNTKALSQALNQDFKE 234
Query: 241 KKEIYMGKTIMLDNKKTFRVMTCYDMTKNDVCRYTEWTPTSLEKRKE 287
KKEIYMGKTI LDNKKTF+VMTCYDMTKNDVCRYTEW P +LEKRKE
Sbjct: 235 KKEIYMGKTIALDNKKTFKVMTCYDMTKNDVCRYTEWMPKNLEKRKE 281
>ref|NP_207224.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
ref|NP_208200.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64696 hypothetical protein HP0426/HP1409 - Helicobacter pylori (strain
26695)
gb|AAD07495.1| (AE000558) H. pylori predicted coding region HP0426 [Helicobacter
pylori 26695]
gb|AAD08452.1| (AE000641) H. pylori predicted coding region HP1409 [Helicobacter
pylori 26695]
Length = 578
Score = 181 bits (458), Expect = 1e-44
Identities = 108/287 (37%), Positives = 154/287 (53%), Gaps = 24/287 (8%)
Query: 2 EKELVTWFNILNKPPLEYLKGVEDFYNAYGEVLEMQDRHAHLLSYKDDDYLHVILCASIL 61
+K L F K ++ + +F AY +L+ QDR+ +LL Y Y IL ++
Sbjct: 291 DKGLKKVFKDSKKDACGFIYEISEFMKAYTALLKKQDRYVYLLRYLPSRYWASILTTALY 350
Query: 62 HHYSDQDIETLKELLVKFYYQDWVAGQTKTTRSQTCCNIINVLKEKKSMDYITSIVKEYL 121
Y D D LK+LLV +YYQ W+AG T T QT NII +K KS++ I ++ +
Sbjct: 351 VKYPDFD--ALKKLLVSYYYQTWIAGGTITRIKQTSINIIKNVKSNKSVETIKELILNSI 408
Query: 122 DDKNITQRFKDNLKDSNLYTKFYFINGKTAKKNSWVKPILILVEYFMSDNANPACIKMDD 181
D N ++ NL DS+ + + WV+P+L L YFM+D P I MD
Sbjct: 409 DSYNTFDQYLYNLWDSS-----------SVYHSKWVRPVLALANYFMADEEKPHFIAMDA 457
Query: 182 DLHVERILPQNPDPSSQWMKDFSEEERGLYTHSLANLTLLGGKKNTKALSQALNQDFKEK 241
+ VE ILPQ P SQW DF +E+R + +++ANLTLL KKN + ALN DF EK
Sbjct: 458 ETQVEHILPQTPKRGSQWNADFDKEKREEWVNNIANLTLLKRKKN----AHALNGDFDEK 513
Query: 242 KEIYMGKTIMLDNKKTFRVMTCYDMTKNDVCRYTEWTPTSLEKRKES 288
++IY G K T +V++CYD+TK Y +W SL++R +S
Sbjct: 514 RKIYGG-------KDTSKVISCYDITKELYSNYRKWNEKSLQERYKS 553
>ref|NP_224020.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71824 hypothetical protein jhp1302 - Helicobacter pylori (strain J99)
gb|AAD06880.1| (AE001553) putative [Helicobacter pylori J99]
Length = 201
Score = 123 bits (308), Expect = 3e-27
Identities = 71/191 (37%), Positives = 103/191 (53%), Gaps = 22/191 (11%)
Query: 95 QTCCNIINVLKEKKSMDYITSIVKEYLDDKNITQRFKDNLKDSNLYTKFYFINGKTAKKN 154
QT NII +K K ++ I ++ + ++ N ++ NL +S+ + +
Sbjct: 5 QTSINIIKNVKSNKGIETIQELILDNIESYNTFNQYHYNLWESS-----------SVYPS 53
Query: 155 SWVKPILILVEYFMSDNANPACIKMDDDLHVERILPQNPDPSSQWMKDFSEEERGLYTHS 214
W++P+L L YFM+D P I MD + VE ILPQ P SQW DF +E+R + +
Sbjct: 54 KWLRPVLALANYFMTDEEKPHFIAMDAETQVEHILPQTPKRGSQWNADFDKEKREKWVNH 113
Query: 215 LANLTLLGGKKNTKALSQALNQDFKEKKEIYMGKTIMLDNKKTFRVMTCYDMTKNDVCRY 274
+ANLTLL KKN K ALN DF EK++IY G K +V++CYD+TK Y
Sbjct: 114 IANLTLLKRKKNAK----ALNGDFDEKRKIYGG-------KDPSKVISCYDITKELYSDY 162
Query: 275 TEWTPTSLEKR 285
+W SL+KR
Sbjct: 163 RKWDEKSLQKR 173
>ref|NP_563071.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81861.1| (AP003193) conserved hypothetical protein [Clostridium perfringens]
Length = 584
Score = 68.9 bits (167), Expect = 6e-11
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 30/215 (13%)
Query: 74 ELLVKFYYQDWVAGQTKTTRSQTCCNIINVLKEKKSMDYITSIVKEYLDDKNITQRFKDN 133
++L K DWV G + R I+ ++EK S++ I D + T F++
Sbjct: 388 KVLEKRLVIDWVNGNSFADRLNRVYGILEAIEEKDSLEEIKEAPVFLYDLERTTAYFENA 447
Query: 134 LKDSNLYTKFYFINGKTAKKNSWVKPILILVEYFMSDNANPACIKMDDDLHVERILPQNP 193
L D + Y+ K + P I V M AN + D + +E +LP+N
Sbjct: 448 LNDIDFYS-----------KGRMMIPKYIFVRLDMEKRANEV-LDYSDKIMIEHVLPRNA 495
Query: 194 DPSSQWMKDFSEEERGLYTHSLANLTLLGGKKNTKALSQALNQDFKEKKEIYMGKTIMLD 253
+ W +FS ++R + + NL ++ G KNT+ A N+ F EK E Y+ K
Sbjct: 496 -KEAYWKDNFSADQRRNWANKFGNLVIITGAKNTR----ANNKPFAEKVEQYLSK----- 545
Query: 254 NKKTFRVMTCYDMTKNDVCRYTEWTPTSLEKRKES 288
K F + +V ++W SL+ R ES
Sbjct: 546 -KSDFAI-------TKEVLELSDWNMDSLKDRHES 572
>ref|NP_290966.1| (NC_002655) orf; conserved hypothetical protein [Escherichia coli
O157:H7 EDL933]
ref|NP_313337.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG59533.1|AE005666_5 (AE005666) orf; conserved hypothetical protein [Escherichia coli
O157:H7 EDL933]
dbj|BAB38733.1| (AP002569) hypothetical protein [Escherichia coli O157:H7]
Length = 452
Score = 65.5 bits (158), Expect = 7e-10
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 32/211 (15%)
Query: 78 KFYYQDWVAGQTKTTRSQTCCNIINVLKEKKSMDYITSIVKEYLDDKNITQRFKDNLKDS 137
K Y W+ Q K+ R C + + + D + + + ++ D+ ++L +
Sbjct: 261 KVYMHGWLKKQIKSQREMVCYSALVAINNDMPFDSVINQINQHADNSGFIAALDEDLYEP 320
Query: 138 NLYTKFYFINGKTAKKNSWVKPILILVEYFMSDNANPACIKM-DDDLHVERILPQNPDPS 196
+ + +K IL+ ++ D + IK + +E ILPQ +
Sbjct: 321 R------------PNQVNLIKAILLRLDMEQQDES---VIKTYTGRITIEHILPQAL-VN 364
Query: 197 SQWMKDFSEEERGLYTHSLANLTLLGGKKNTKALSQALNQDFKEKKEIYMGKTIMLDNKK 256
W+ F +E + H + NLTL+ G KN S+A + DF +KK IY L++K
Sbjct: 365 EYWINRFQPQEHVYWLHKIGNLTLISGSKN----SEAQHYDFIKKKSIYE----KLNSKS 416
Query: 257 TFRVMTCYDMTKNDVCRYTEWTPTSLEKRKE 287
+F D+TK DVC +EW L+ R E
Sbjct: 417 SF------DLTK-DVCNSSEWGLAELKMRHE 440
>ref|NP_469682.1| (NC_003212) similar to unknown protein [Listeria innocua]
emb|CAC95570.1| (AL596164) similar to unknown protein [Listeria innocua]
Length = 553
Score = 51.6 bits (122), Expect = 1e-05
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 26/133 (19%)
Query: 158 KPILILVEYFMSDNANPACIKMDDD--LHVERILPQNPDPSSQWMKDFSEEERGLYTHSL 215
KP + + ++D+ + +DD+ +H+E I+P ++ W D +E+ G Y L
Sbjct: 434 KPSIRYILKKINDSYSKELTVLDDNNKVHIEHIMPVK---ATDW--DIIKEDHGEYLWKL 488
Query: 216 ANLTLLGGKKNTKALSQALNQDFKEKKEIYMGKTIMLDNKKTFRVMTCYDMTKNDVCRYT 275
NLTLLGG+ N K + N+ F EKKE+Y + L ++ Y
Sbjct: 489 GNLTLLGGEYNKK----STNKIFNEKKEVYEYSQVQL---------------TRELLDYE 529
Query: 276 EWTPTSLEKRKES 288
EW ++++R++S
Sbjct: 530 EWNIKTIKERQQS 542
>ref|NP_463839.1| (NC_003210) similar to unknown protein [Listeria monocytogenes
EGD-e]
emb|CAD00836.1| (AL591974) similar to unknown protein [Listeria monocytogenes]
Length = 553
Score = 43.1 bits (100), Expect = 0.004
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 133 NLKDSNLYTKFYFINGKTA-KKNSWVKPILILVEYFMSDNANPACIKMDDDLHVERILPQ 191
NL +N+ F+N ++ K + ++ IL + S + A + ++ +H+E I+P
Sbjct: 410 NLIRTNIIADDVFLNNFSSFKTTNKLRLRYILKKINDSYSKEIAVLNDNNKIHLEHIMPI 469
Query: 192 NPDPSSQWMKDFSEEERGLYTHSLANLTLLGGKKNTKALSQALNQDFKEKKEIYMGKTIM 251
D W D +EE Y + NLTLLG + N K + N+ F +KK+IY +
Sbjct: 470 KADG---W--DIIKEEHEEYLWKIGNLTLLGSEYNKK----STNKIFNDKKDIYEYSEVQ 520
Query: 252 LDNK 255
L K
Sbjct: 521 LTRK 524
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,045,269
Number of Sequences: 1026957
Number of extensions: 8492940
Number of successful extensions: 21288
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 21270
Number of HSP's gapped (non-prelim): 9
length of query: 288
length of database: 324,149,939
effective HSP length: 120
effective length of query: 168
effective length of database: 200,915,099
effective search space: 33753736632
effective search space used: 33753736632
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 97 (42.0 bits)