BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646007|ref|NP_208188.1| hypothetical protein
[Helicobacter pylori 26695]
(271 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208188.1| (NC_000915) hypothetical protein [Helicoba... 561 e-159
ref|NP_224148.1| (NC_000921) putative [Helicobacter pylori ... 316 2e-85
ref|NP_207224.1| (NC_000915) hypothetical protein [Helicoba... 174 1e-42
ref|NP_224019.1| (NC_000921) putative [Helicobacter pylori ... 174 1e-42
ref|NP_563071.1| (NC_003366) conserved hypothetical protein... 114 1e-24
ref|NP_078365.1| (NC_002162) conserved hypothetical [Ureapl... 89 5e-17
ref|NP_629470.1| (NC_003888) hypothetical protein [Streptom... 82 8e-15
ref|NP_284921.1| (NC_003116) hypothetical protein [Neisseri... 81 1e-14
ref|NP_223180.1| (NC_000921) putative [Helicobacter pylori ... 80 2e-14
ref|NP_245532.1| (NC_002663) unknown [Pasteurella multocida... 78 1e-13
gb|AAM00835.1|AF486548_2 (AF486548) RloF [Campylobacter jej... 78 1e-13
ref|NP_488219.1| (NC_003272) unknown protein [Nostoc sp. PC... 77 3e-13
ref|NP_463839.1| (NC_003210) similar to unknown protein [Li... 75 6e-13
ref|NP_222895.1| (NC_000921) putative [Helicobacter pylori ... 72 5e-12
ref|NP_469682.1| (NC_003212) similar to unknown protein [Li... 72 6e-12
ref|NP_231401.1| (NC_002505) conserved hypothetical protein... 71 1e-11
ref|NP_617323.1| (NC_003552) conserved hypothetical protein... 70 2e-11
ref|NP_290965.1| (NC_002655) orf; conserved hypothetical pr... 69 4e-11
ref|NP_223290.1| (NC_000921) putative [Helicobacter pylori ... 67 2e-10
ref|NP_406898.1| (NC_003143) conserved hypothetical protein... 66 5e-10
ref|NP_313331.1| (NC_002695) hypothetical protein [Escheric... 65 1e-09
ref|NP_290960.1| (NC_002655) Uncharacterized conserved prot... 65 1e-09
ref|NP_245531.1| (NC_002663) unknown [Pasteurella multocida... 63 4e-09
gb|AAM11681.2|AF493796_1 (AF493796) T4-exclusion protein st... 61 1e-08
ref|NP_290966.1| (NC_002655) orf; conserved hypothetical pr... 61 1e-08
ref|NP_599965.1| (NC_003450) COG1479:Uncharacterized ACR [C... 59 7e-08
ref|NP_207310.1| (NC_000915) hypothetical protein [Helicoba... 59 7e-08
ref|NP_207423.1| (NC_000915) hypothetical protein [Helicoba... 58 1e-07
ref|NP_231402.1| (NC_002505) conserved hypothetical protein... 52 9e-06
ref|NP_489196.1| (NC_003272) hypothetical protein [Nostoc s... 51 1e-05
ref|NP_326018.1| (NC_002771) conserved hypothetical protein... 51 2e-05
ref|NP_223672.1| (NC_000921) putative [Helicobacter pylori ... 49 6e-05
>ref|NP_208188.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64694 hypothetical protein HP1397 - Helicobacter pylori (strain 26695)
gb|AAD08442.1| (AE000639) H. pylori predicted coding region HP1397 [Helicobacter
pylori 26695]
Length = 271
Score = 561 bits (1446), Expect = e-159
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MAKIESNDSHLRGILKDELYYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGS 60
MAKIESNDSHLRGILKDELYYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGS
Sbjct: 1 MAKIESNDSHLRGILKDELYYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGS 60
Query: 61 LVLIAISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTE 120
LVLIAISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTE
Sbjct: 61 LVLIAISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTE 120
Query: 121 RKRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNIND 180
RKRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNIND
Sbjct: 121 RKRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNIND 180
Query: 181 FIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFKGELLKHAKEHEREEFVS 240
FIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFKGELLKHAKEHEREEFVS
Sbjct: 181 FIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFKGELLKHAKEHEREEFVS 240
Query: 241 RWNALSQKCSDNDLTMETLFSWYNLSQSGNF 271
RWNALSQKCSDNDLTMETLFSWYNLSQSGNF
Sbjct: 241 RWNALSQKCSDNDLTMETLFSWYNLSQSGNF 271
>ref|NP_224148.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71806 hypothetical protein jhp1430 - Helicobacter pylori (strain J99)
gb|AAD07012.1| (AE001566) putative [Helicobacter pylori J99]
Length = 282
Score = 316 bits (809), Expect = 2e-85
Identities = 168/257 (65%), Positives = 199/257 (77%), Gaps = 6/257 (2%)
Query: 3 KIESNDSHLRGILKDEL--YYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGS 60
+++ D L+ IL L YYQIP YQRPYQWTE+NCEKLLDDLF +YE +E YFCGS
Sbjct: 4 EVKGVDRPLKDILATALVSYYQIPDYQRPYQWTEKNCEKLLDDLFSSYEYYKESGYFCGS 63
Query: 61 LVLIAISKDSK--ATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRH 118
LVLI I+ DS+ A TYD+VDGQQRLSTFILLAKVLA LY+ LD + E L++ D
Sbjct: 64 LVLIVINTDSETNAETYDIVDGQQRLSTFILLAKVLATLYDKDLDTTSRELLEKSLGDTG 123
Query: 119 TE-RKRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKN 177
E R+RL FN +G NA+ DF ALEHFNDSQASKNKNNKNNYLKNAICLKDYL +KEIK+
Sbjct: 124 GEKRERLHFNAMGLNAKDDFVYALEHFNDSQASKNKNNKNNYLKNAICLKDYLKEKEIKD 183
Query: 178 INDFIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFKGELLKH-AKEHERE 236
IN FI WLY V FI CPN+ ALRIF+VLNARGLPL+A D+FK ELLK A++ ++E
Sbjct: 184 INAFITWLYFKVVFIKTTCPNVSMALRIFSVLNARGLPLHAIDVFKVELLKKLAQKKDQE 243
Query: 237 EFVSRWNALSQKCSDND 253
EF+SRW+AL QKCS+N+
Sbjct: 244 EFLSRWSALHQKCSENE 260
>ref|NP_207224.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
ref|NP_208200.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64696 hypothetical protein HP0426/HP1409 - Helicobacter pylori (strain
26695)
gb|AAD07495.1| (AE000558) H. pylori predicted coding region HP0426 [Helicobacter
pylori 26695]
gb|AAD08452.1| (AE000641) H. pylori predicted coding region HP1409 [Helicobacter
pylori 26695]
Length = 578
Score = 174 bits (440), Expect = 1e-42
Identities = 101/280 (36%), Positives = 164/280 (58%), Gaps = 21/280 (7%)
Query: 1 MAKIESNDSHLRGILKD-ELYYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCG 59
MAKI+ L IL D + +YQ+P YQRPY W +++ L+DDL +Y ++RE +YFCG
Sbjct: 2 MAKIDVELKKLHQILVDRDYFYQVPDYQRPYVWDKDHLGALIDDLVGSYTNNREDEYFCG 61
Query: 60 SLVLIAISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRH- 118
S+V++ KD + +DVVDGQQRL++FI+LA + LY L ++ + +++ DR+
Sbjct: 62 SIVIVENQKDKR---WDVVDGQQRLTSFIILACTILRLYKHSLGQESKDFIEDSIYDRYD 118
Query: 119 TERKRLSF------NTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMK 172
E++RL F N+I N + + ++ S+ +K K +N YL+NA K+ L +
Sbjct: 119 KEKERLKFLTAQNYNSIFENTVLNHLEFEDNIKKSELNK-KFEENTYLRNAYYFKELLNE 177
Query: 173 K----EIKNINDFIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFKGELLK 228
I +I+DF++W Y ++ IIC D A++IF VLN RG PL+ DI K L++
Sbjct: 178 SVENGSISDIDDFVKWFYEHIVLTRIICFEQDSAMQIFQVLNDRGQPLSPIDILKSSLMQ 237
Query: 229 HAKE--HEREEFVSRWNALSQKCSD---NDLTMETLFSWY 263
K+ +R++F++ W+ L + C D+ +E F+ Y
Sbjct: 238 EIKQDSEKRKDFITTWDKLVEACKSVEGVDIDLEDFFNMY 277
>ref|NP_224019.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71824 hypothetical protein jhp1301 - Helicobacter pylori (strain J99)
gb|AAD06879.1| (AE001553) putative [Helicobacter pylori J99]
Length = 314
Score = 174 bits (440), Expect = 1e-42
Identities = 104/285 (36%), Positives = 164/285 (57%), Gaps = 31/285 (10%)
Query: 1 MAKIESNDSHLRGILKD-ELYYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCG 59
MAK+E L IL D E +YQ+P YQRPY W +++ L+DDL +Y ++RE +YFCG
Sbjct: 1 MAKVEVELKKLYQILVDAEYFYQVPNYQRPYVWDKDHLGALIDDLVVSYTNNREDEYFCG 60
Query: 60 SLVLIAISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRH- 118
S+V+ KD + +DVVDGQQRL++FI+LA + LY L K+ ++E DRH
Sbjct: 61 SIVIAENPKDKR---WDVVDGQQRLTSFIILACTILRLYKHRLGQKSKAFIEESIYDRHD 117
Query: 119 TERKRLSF-----------NTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLK 167
E++RL F NT+ N E++ ++ S+ +K K ++N YL+NA +
Sbjct: 118 KEKERLKFLTAQNYNSIFENTVLKNLEFE-----DNIKKSEWNK-KFDENTYLRNAYYFR 171
Query: 168 DYLMKK----EIKNINDFIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFK 223
+ L + I +++DF++W Y ++ IIC D A++IF VLN RG PL+ DI K
Sbjct: 172 ELLNESMENGSISDMDDFVKWFYEHIALTRIICFEQDSAMQIFQVLNDRGQPLSPIDILK 231
Query: 224 GELLKHAKE--HEREEFVSRWNALSQKCSD---NDLTMETLFSWY 263
L++ K+ +R++F++ W+ L + C D+ +E F+ Y
Sbjct: 232 SSLMQEIKQDSEKRKDFITTWDKLVEACKSVEGIDIDLEDFFNMY 276
>ref|NP_563071.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81861.1| (AP003193) conserved hypothetical protein [Clostridium perfringens]
Length = 584
Score = 114 bits (285), Expect = 1e-24
Identities = 78/267 (29%), Positives = 136/267 (50%), Gaps = 24/267 (8%)
Query: 3 KIESNDSHLRGILKDELYYQIPIYQRPYQWTEENCEKLLDDLFF---------NYEDDRE 53
K+++ + +++ +L ++ ++IP YQR Y WT+EN ++L++D++ N E D+
Sbjct: 8 KVKAKEYYIKDLLSNKFLFEIPDYQRAYSWTKENLKQLVEDIWESVELNKARGNKEFDQY 67
Query: 54 GDYFCGSLVLIAIS-KDSKATTYDVVDGQQRLSTFILLAKVLADL-----YNDCLD---- 103
YF GS+VL + KD YDV+DGQQRL++ I+L + DL Y L
Sbjct: 68 EPYFLGSIVLCSKEYKDDGCGIYDVIDGQQRLTSIIMLIAAIRDLIDNEEYKKVLSDLIY 127
Query: 104 --PKNLEHLQEGWKDRHTERKRLSFNT-IGSNAEYDFQDALEHFNDSQASKNKNNKNNYL 160
P L ++E + + ++ F I +N + L+ S+A +N N
Sbjct: 128 QKPNVLMGIKESIRVKARGKEEEFFKKYILTNGGTELVKDLDMEELSEAKQNMVNAIEVF 187
Query: 161 KNAICLKDYLMKKEIKNINDFIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLNATD 220
+++ ++ + +E +N+FI +L V + I + A R+FNV+NARGLPL +D
Sbjct: 188 RDSFFNENGELLEE--KLNEFIVYLLQKVVLVVITTESFTSAFRLFNVINARGLPLTDSD 245
Query: 221 IFKGELLKHAKEHEREEFVSRWNALSQ 247
+ K E L+ R+E+ W + Q
Sbjct: 246 LLKSENLRVMNPEIRKEYTDIWESHEQ 272
>ref|NP_078365.1| (NC_002162) conserved hypothetical [Ureaplasma urealyticum]
pir||C82880 conserved hypothetical UU527 [imported] - Ureaplasma urealyticum
gb|AAF30940.1|AE002151_6 (AE002151) conserved hypothetical [Ureaplasma urealyticum]
Length = 971
Score = 89.0 bits (219), Expect = 5e-17
Identities = 72/245 (29%), Positives = 118/245 (47%), Gaps = 31/245 (12%)
Query: 23 IPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVLIAISKDSKATTYDVVDGQQ 82
IP++QR Y WT +N EKLL+D+ ++F GS++ + + K+ ++DGQQ
Sbjct: 321 IPVFQRNYVWTIDNIEKLLEDINDISNKQNNENHFLGSIISVLV-KEESIDNIQIIDGQQ 379
Query: 83 RLSTFILLAKV-LADLYNDCLD--------PKNLEHLQEGWKDRHTERKRLSFNTIGSNA 133
RL+T L+ K + LYN+ + K L HL++ + +R R F+ IG N
Sbjct: 380 RLTTLFLITKAFIIFLYNNREEITKFTNEQIKQLSHLKDIFFNREFIIDR--FSRIGGNP 437
Query: 134 EYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYL-----MKKEIKNINDFIEWLYSN 188
+Y E ++ +NKNN++ + LKD + KE K +F L++N
Sbjct: 438 DY------EALKQILSNDELDNKNNHI--FMNLKDIVEWFEEKPKEFKEWANFANALFNN 489
Query: 189 VKFITIICPNIDKALRIFNVLNARGLPLNATDIFKG-----ELLKHAKEHEREEFVSRWN 243
+ +I N+D+ + F LN LNA ++ K E K + +EEF ++N
Sbjct: 490 LILNLVILKNVDE-FKTFESLNTNAKKLNAIELLKNKFCWYENFKESIFKNKEEFQQKYN 548
Query: 244 ALSQK 248
L K
Sbjct: 549 DLITK 553
>ref|NP_629470.1| (NC_003888) hypothetical protein [Streptomyces coelicolor A3(2)]
pir||T35601 hypothetical protein SC6G9.04c - Streptomyces coelicolor
emb|CAB45595.1| (AL079356) hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 565
Score = 81.6 bits (200), Expect = 8e-15
Identities = 66/264 (25%), Positives = 124/264 (46%), Gaps = 24/264 (9%)
Query: 23 IPIYQRPYQWTEENCEKLLDDL--FFNYEDDR---EGDYFCGSLVLIAISKDSKATTYDV 77
+P YQR Y WTE + + D+ F ++++ + +YF GS+V + KA Y++
Sbjct: 25 VPDYQRDYSWTESHVDYFWQDVLGFMREQNEKTLADAEYFIGSMVRV-----DKAERYEL 79
Query: 78 VDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGW---KDRHTERKRLSFNTIGSNAE 134
+DGQQRL+T ++L + D L+ K Q W +D T + S + +
Sbjct: 80 LDGQQRLATIVILLSAIRDRLRP-LNTKAYIKTQGRWIAEEDDLTGESKYSLTLSTYDRD 138
Query: 135 YDFQ----DALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFI----EWLY 186
Y + D +E + AS+ + +A + + + K ++ + +
Sbjct: 139 YFRRRIQNDPVETLKPATASQTLIDAARRKFDAELTSELDKQPDEKGREQWLLLLRDVIM 198
Query: 187 SNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFKGELLKHAKEHEREEFVSRWNALS 246
++V +T+ C + A IF LN RGL L+ D+ + +L+ A E +R+E VS W +
Sbjct: 199 NHVTTVTVTCASEQDAASIFETLNDRGLGLSTVDLLRNFVLRRAGEPDRDEIVSIWADVL 258
Query: 247 QKCSDNDLTMETLFSWYNLSQSGN 270
++ N + ++ Y +S+ G+
Sbjct: 259 RE--SNSVDVDEFLRHYWISRHGD 280
>ref|NP_284921.1| (NC_003116) hypothetical protein [Neisseria meningitidis Z2491]
pir||A81797 hypothetical protein NMA2230 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB85441.1| (AL162758) hypothetical protein [Neisseria meningitidis Z2491]
Length = 571
Score = 81.3 bits (199), Expect = 1e-14
Identities = 68/270 (25%), Positives = 122/270 (45%), Gaps = 38/270 (14%)
Query: 18 ELYYQIPIYQRPYQWTEENCEKLLDDL--FFNYEDDREGDYFCGSLVLIAISKDSKATTY 75
E Y+ IP YQRPY+W E C L D+ F + +YF G++V+ K +
Sbjct: 22 EKYFIIPEYQRPYRWDTEKCAVLWSDIVDFRQSSTGKNEEYFLGTIVVCPNEKGN----L 77
Query: 76 DVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDR--------------HTER 121
+V+DGQQRL++ +LL + + + K + T+R
Sbjct: 78 EVIDGQQRLTSLLLLLRAFYRVLEQTESTPDTAAKITTLKSKIAPCIWDVDVLTAEITDR 137
Query: 122 KRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMK--KEIKNIN 179
+ +T + + + H + ++ ++NY N + Y +K +E N
Sbjct: 138 TAIRLHT---QVATETDNEILHEILANGEISEECRSNYAVNYL----YFLKQCQEYARTN 190
Query: 180 DFIEW------LYSNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFKGELLKHAKEH 233
++W + ++ + I +++ AL IF+ LN RGLPL+ DIFK L K A+
Sbjct: 191 P-MDWYHLCLTILNDCILLPIESDSLNSALTIFSTLNDRGLPLSDADIFKARLYKMAQ-- 247
Query: 234 EREEFVSRWNALSQKCSDNDLTMETLFSWY 263
++++FV +W L ++++ LF +Y
Sbjct: 248 QKDKFVEQWKELVALAEGASISVDDLFRYY 277
>ref|NP_223180.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71929 hypothetical protein jhp0462 - Helicobacter pylori (strain J99)
gb|AAD06043.1| (AE001480) putative [Helicobacter pylori J99]
Length = 706
Score = 80.5 bits (197), Expect = 2e-14
Identities = 64/247 (25%), Positives = 117/247 (46%), Gaps = 23/247 (9%)
Query: 21 YQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVLIAISKDSKATTYDVVDG 80
+ IPIYQR Y W +E CE+L DD+ +D+ +F GS +L + ++ ++ ++DG
Sbjct: 20 FVIPIYQRVYSWEKEQCEQLWDDIIKIGGNDKINGHFIGS-ILYVLDGNTPSSPLLIIDG 78
Query: 81 QQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRLSFNTIGSNAEYDFQDA 140
QQRL+T LL L +D + + +E D+ ++K F I S ++ +D
Sbjct: 79 QQRLTTITLLCIALRSHLSDEVKREEIESYLIN-SDKDGDKK---FRLILSESD---KDT 131
Query: 141 LEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLYSNVKFITIICPNID 200
L D K ++N L +K I D +E ++ ++ + I+ +D
Sbjct: 132 LLSLIDKNKRKPSEPSVKIMENF-----KLFEKWISKNTDKLETIFKGLEKLMIVYIALD 186
Query: 201 K----ALRIFNVLNARGLPLNATDIFKGELLKHAKEHEREE--FVSRWNALSQKCSDNDL 254
K IF +N++G+ L TD+ + ++ + E+++ + W A+ + N
Sbjct: 187 KEKDDPQLIFESMNSKGIELTQTDLIRNYIIMETETEEKQKDFYNGYWRAMEEDFKQN-- 244
Query: 255 TMETLFS 261
ETLF+
Sbjct: 245 --ETLFN 249
>ref|NP_245532.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02679.1| (AE006095) unknown [Pasteurella multocida]
Length = 633
Score = 77.8 bits (190), Expect = 1e-13
Identities = 64/232 (27%), Positives = 100/232 (42%), Gaps = 36/232 (15%)
Query: 20 YYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVLIAISKDSKATTYDVVD 79
+Y IPIYQR Y W +E E L+ D+ E+ +Y+ GS LI +D ++V+D
Sbjct: 22 HYIIPIYQRNYAWGKEEIELLIQDIKIASENKENNNYYIGS--LIVYQRDD--GQFEVID 77
Query: 80 GQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRLSFNTIGSNAEYDFQD 139
GQQRL+T +LA N+ L ++ + E +K + E K L + SN E FQ
Sbjct: 78 GQQRLTTLHILALACGIKRNNNLSFEHRRNSDESFK--NIENKELRY---ASNIEIGFQY 132
Query: 140 ALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLYSNVKFITIICPNI 199
A D L K+ + + F ++L +NV + P
Sbjct: 133 AQSEL-----------------------DKLFGKKPEELTKFKKFLQNNVIILRTQVPPE 169
Query: 200 DKALRIFNVLNARGLPLNATDIFKGELLKHAKEHEREEFVSRWNALSQKCSD 251
F ++N RG L ++ K L+ ++ F + W+A CSD
Sbjct: 170 TDLNHYFEIMNNRGEQLEKHEVLKANLMSVLNPDDQNVFATIWDA----CSD 217
>gb|AAM00835.1|AF486548_2 (AF486548) RloF [Campylobacter jejuni]
Length = 555
Score = 77.8 bits (190), Expect = 1e-13
Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 28/231 (12%)
Query: 21 YQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDY--FCGSLVLIAISKDSKATTYDVV 78
Y +P YQR Y W+E+ E DL+ + ED + +Y F GS+VL +KD+K D++
Sbjct: 23 YSVPKYQRNYSWSEDQWE----DLWCDIEDLEKSNYPHFMGSIVLQE-TKDAK--NIDII 75
Query: 79 DGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRLSFN----------- 127
DGQQRL+T + + Y D L K+ + + +K L +
Sbjct: 76 DGQQRLTTLSIFMSAII-FYIDNLVKKDKDKTDNEKRKEIFNKKYLGYESSTTLKIVPKL 134
Query: 128 TIGSNAEYDFQDALEHFN--DSQASKNKNNKNNYLKNAIC-----LKDYLMKKEIKNIND 180
T+ + F + + N D +++N N L A +K+ +++ K I +
Sbjct: 135 TLNNTNNNFFTHYIINQNIPDKPTLADEDNSNYLLYKAFNFFQKKIKEKFQEEDGKIIAE 194
Query: 181 FIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFKGELLKHAK 231
++E + +KFI II N A +F LNARG+ L A D+ K L K
Sbjct: 195 YVEMIGEQLKFIVIIVQNELDAYVLFQTLNARGVELTAADLLKNYFLNLLK 245
>ref|NP_488219.1| (NC_003272) unknown protein [Nostoc sp. PCC 7120]
dbj|BAB75878.1| (AP003595) ORF_ID:all4179~unknown protein [Nostoc sp. PCC 7120]
Length = 593
Score = 76.6 bits (187), Expect = 3e-13
Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 44/274 (16%)
Query: 1 MAKIESNDSHLRGILKDELYYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREG---DYF 57
MA IES D L + +D +Y + YQR Y W E+ +LL+D++ + D++ G + F
Sbjct: 1 MAAIESRDYTLEELFQD--FYVVKEYQREYVWEEKQVRELLEDVYEPFLDNKSGSDWECF 58
Query: 58 CGSLVLIAISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEH-------- 109
GS+++ Y+++DGQQR++T L+ + D + L+P EH
Sbjct: 59 IGSIIVC-----KSQELYELIDGQQRMTTAYLIVCAVRDYLLE-LNPD--EHNIGQLKGF 110
Query: 110 -----LQEGWKDRHTERKRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAI 164
L+E ++ ER L ++ + Y + N +N + + +KNA
Sbjct: 111 ITSYVLEENGSEKFKERIELQYD---EESRYILERIARQQNFLDIPENSSVRR--IKNAY 165
Query: 165 CLKDYLMKKE-------IKNINDFIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLN 217
+ +K E I+ + F NV+ + + ++ AL++F +N RG+ L+
Sbjct: 166 QIALRFLKDEFGGNETTIQQVKLFYARFIKNVRVVRVETKSMSHALKVFATINNRGVGLD 225
Query: 218 ATDIFKGELL------KHAKEHEREEFVSRWNAL 245
+ D+ K + K K+ + E ++W +
Sbjct: 226 SMDLLKNLMFIQIAKNKIIKDKDFERLKNKWKEM 259
>ref|NP_463839.1| (NC_003210) similar to unknown protein [Listeria monocytogenes
EGD-e]
emb|CAD00836.1| (AL591974) similar to unknown protein [Listeria monocytogenes]
Length = 553
Score = 75.5 bits (184), Expect = 6e-13
Identities = 72/287 (25%), Positives = 113/287 (39%), Gaps = 39/287 (13%)
Query: 1 MAKIESNDSHLRGILKDELYYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGS 60
M+ I SN L + + +Y +IP YQR Y W E E L DL + E +F
Sbjct: 1 MSIINSNFRSLGSYIMENIY-KIPNYQREYSWEETELEDLWMDLSQIINGETESHFF--G 57
Query: 61 LVLIAISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKD---- 116
++I + K KA ++DGQQR ST ++ + +L+ E GW D
Sbjct: 58 QIVIHVDKKEKAKL--IIDGQQRTSTAVIFLAAMRELFT--------EMYNAGWDDAQFD 107
Query: 117 ----------RHTERKRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICL 166
R+T+ + +G N + F + ++ + Q K K+ N
Sbjct: 108 AQDITTKFIGRYTQTRDERKLILGENDKSYFSNRIQSVSSEQLGLQKATKSQKRINFAYN 167
Query: 167 KDYLMKKEIKNINDFIEWLYSNVK-----------FITIICPNIDKALRIFNVLNARGLP 215
Y +E N +DF+E Y +K + + + ++A IF LNARG
Sbjct: 168 YFYKKLEEEINSSDFLEDKYGLLKTFFSTFTEKCSVMFVETDDFNEAFIIFETLNARGKD 227
Query: 216 LNATDIFKGELLKHAKEHEREEFVSRWNALSQKCSDNDLTMETLFSW 262
L D+ K L K A + + E W + + D T W
Sbjct: 228 LETADLLKNHLFKIANK-KVGEVKKNWKQMLEFIGTVDTTKYIRHFW 273
>ref|NP_222895.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71963 hypothetical protein jhp0174 - Helicobacter pylori (strain J99)
gb|AAD05767.1| (AE001456) putative [Helicobacter pylori J99]
Length = 567
Score = 72.4 bits (176), Expect = 5e-12
Identities = 59/216 (27%), Positives = 102/216 (46%), Gaps = 18/216 (8%)
Query: 21 YQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREG-DYFCGSLVLIAISKDSKATTYDVVD 79
Y IP YQR Y W ++N L +DL E +++G +F G++V +A ++D+K YD++D
Sbjct: 14 YSIPNYQRDYAWKDKNFRDLWEDLEEAIEYNKKGYGHFIGTMV-VAKNEDNK-KLYDIID 71
Query: 80 GQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRLSFNTIGSNAEYDFQD 139
GQQR +T +L VL K E + + ++ L N + F+
Sbjct: 72 GQQRTTTIFMLLHVLVS--------KQYEEDKRETRKYLYQKGELKLEVASQNQSF-FKT 122
Query: 140 ALE-----HFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLYSNVKFITI 194
LE + + + + K N + + D + K + +N+ +E L V + +
Sbjct: 123 LLEVAEKGNISHCEKDADTEGKQNLFEVLKAILDKISKLSEEEVNERLEVLLKMV-LMRL 181
Query: 195 ICPNIDKALRIFNVLNARGLPLNATDIFKGELLKHA 230
P+ KA+R F +N RG+PL D K L+ ++
Sbjct: 182 EEPDPGKAIRTFQSVNDRGVPLLLLDKLKSLLIYYS 217
>ref|NP_469682.1| (NC_003212) similar to unknown protein [Listeria innocua]
emb|CAC95570.1| (AL596164) similar to unknown protein [Listeria innocua]
Length = 553
Score = 72.0 bits (175), Expect = 6e-12
Identities = 68/251 (27%), Positives = 107/251 (42%), Gaps = 26/251 (10%)
Query: 1 MAKIESNDSHLRGILKDELYYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGS 60
M+ I SN L + + +Y +IP YQR Y W E E L DL + E +F G
Sbjct: 1 MSIINSNFRSLGSYIMENVY-KIPDYQREYSWDETELEDLWMDLSQIINGETES-HFLGQ 58
Query: 61 LVLIAISKDSKATTYDVVDGQQRLSTFILLAKVLADLY---NDC--LDPK-NLEHLQEGW 114
+V I D K ++DGQQR ST ++L + DL+ +DC D + + E + +
Sbjct: 59 IV---IHIDKKVDEKLIIDGQQRTSTSVILLAAMRDLFIKIHDCGWEDARFDAEDITTKF 115
Query: 115 KDRHTERKRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKE 174
R+T+ + +G N + F + ++ + K K N K DY KK
Sbjct: 116 IGRYTQTRDERKLILGENDKEYFSNRIQFM--TPEIKKKQKLTNSQKRIDFAYDYFYKKL 173
Query: 175 IKN-------------INDFIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLNATDI 221
K+ + +F + + +I++A IF LNARG L D+
Sbjct: 174 EKSMDSAETLENKYTVLKEFFSTFTEKCSVMFVETDDINEAFIIFETLNARGRDLETADL 233
Query: 222 FKGELLKHAKE 232
K L + A +
Sbjct: 234 LKNHLFRVANK 244
>ref|NP_231401.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||F82160 conserved hypothetical protein VC1766 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94915.1| (AE004253) conserved hypothetical protein [Vibrio cholerae]
Length = 663
Score = 70.9 bits (172), Expect = 1e-11
Identities = 69/271 (25%), Positives = 115/271 (41%), Gaps = 30/271 (11%)
Query: 11 LRGILKDELYYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREG------DYFCGSLVLI 64
L I D + IP YQRPY W++ DD+ + D +E +YF G+++
Sbjct: 14 LEKIYTDNYQFSIPSYQRPYVWSD-------DDVLLLFRDIKEACRLKEPNYFIGTILSS 66
Query: 65 AISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRL 124
I +D + Y+++DGQQR +T +L+ +A Y +L L ++ RL
Sbjct: 67 RIEQDGERI-YELIDGQQRTTTLMLMT--IAFKYAGI--KSDLAGLAVYTSSDGEDKPRL 121
Query: 125 SFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNIND---- 180
F+ I + N SK N YLK D L K+ K +D
Sbjct: 122 QFS-IREQVQQLLGGLAGLKNYQVPSKETIADNAYLKQMGVALDVLTKEVEKLKSDDGVS 180
Query: 181 ---FIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFKGELLKHAKEHEREE 237
++LY V+++ I P R+F +N G+ L DI K +L KH ++ +
Sbjct: 181 AEAMGDYLYRQVQWVNNIVPTQMDLNRLFATMNTAGIQLEQADILKAKLFKHI-HTDKAQ 239
Query: 238 FVSRWNALSQKCSDNDLTMETLF---SWYNL 265
+ + W A + + + +F WY++
Sbjct: 240 YDAMWVACEHLENYFERNVRKVFPNADWYHI 270
>ref|NP_617323.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM05803.1| (AE010933) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 702
Score = 70.1 bits (170), Expect = 2e-11
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 28/240 (11%)
Query: 4 IESNDSHLRGILKDELYYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVL 63
+++ ++ L L+ + IPIYQR Y WTE+ C++L DD+ +D +F GS+V
Sbjct: 1 MKATEAKLLDFLRKSPQFVIPIYQRTYSWTEKECKQLWDDILRTGSNDDISAHFIGSIVY 60
Query: 64 I--AISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTER 121
I I + S + V+DGQQRL+T LL L+ D LD + E L D + R
Sbjct: 61 IEKGIYQVSSQSPLLVIDGQQRLTTVTLLIAALSRAL-DQLDEEKREPL-----DGFSPR 114
Query: 122 KRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDF 181
K ++ + E + H+ + +K++ + + + K+Y + + ++N F
Sbjct: 115 KLRNYYLLNPEEEGE-----RHYKLILSQTDKDSLTSIVGSREQPKEYSL-RVMENFKLF 168
Query: 182 IEWLYSNVKFITIICPNI--------------DKALRIFNVLNARGLPLNATDIFKGELL 227
W+ + +C + D IF +N+ G L+ D+ + +L
Sbjct: 169 ESWIAGCKDDLMPLCKGLAKLVVVDIALNRDQDNPQLIFESMNSTGKELSQADLIRNYIL 228
>ref|NP_290965.1| (NC_002655) orf; conserved hypothetical protein [Escherichia coli
O157:H7 EDL933]
ref|NP_313336.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG59532.1|AE005666_4 (AE005666) orf; conserved hypothetical protein [Escherichia coli
O157:H7 EDL933]
dbj|BAB38732.1| (AP002569) hypothetical protein [Escherichia coli O157:H7]
Length = 94
Score = 69.3 bits (168), Expect = 4e-11
Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 5/91 (5%)
Query: 4 IESNDSHLRGILKDELYYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVL 63
+E+ + ++ IL + + IP YQRPY WT +N E+L+DD++ + + + G YF GS++
Sbjct: 1 MEAKECKVQDILTENKKFIIPSYQRPYSWTVDNAEQLIDDIYKSSQSEENG-YFIGSMIC 59
Query: 64 IAISKDSKATTYDVVDGQQRLSTFILLAKVL 94
I + Y+VVDGQQRL+T ++ L
Sbjct: 60 I----NKGQNQYEVVDGQQRLTTLSIIVSEL 86
>ref|NP_223290.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71914 hypothetical protein jhp0572 - Helicobacter pylori (strain J99)
gb|AAD06155.1| (AE001490) putative [Helicobacter pylori J99]
Length = 683
Score = 67.0 bits (162), Expect = 2e-10
Identities = 63/245 (25%), Positives = 109/245 (43%), Gaps = 28/245 (11%)
Query: 21 YQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLV-LIAISKDSKA----TTY 75
+ IP+YQR Y W EENCEKLL D+ N +++ +F GS+ ++ + D K+ +
Sbjct: 19 FSIPVYQRNYTWEEENCEKLLQDI-VNISQNKK-THFMGSITYILHLIDDEKSLRQLQEF 76
Query: 76 DVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRLSFNTIGSNAE- 134
++DGQQR++T +LL K + + K ++ L + +RL I S+ E
Sbjct: 77 VIIDGQQRITTIMLLLKAIETKIQNEGIKKEIDGL------LNLSGQRLRLKPIKSDKEA 130
Query: 135 YDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLYSNVKFITI 194
+D S KNN + K L +Y+ K IE +Y ++ I
Sbjct: 131 FDLVMQNRSHEIQGVSHIKNNYKFFTKE---LDNYISK------GYRIEEIYGAFLWLKI 181
Query: 195 ICPNI----DKALRIFNVLNARGLPLNATDIFKGELLK-HAKEHEREEFVSRWNALSQKC 249
+ + D +F +NA G+ L D+ + L+ +++ + + W L
Sbjct: 182 VAIGLELGEDDPQVVFESINATGVQLKGLDLIRNYLMMGENSDNQNRLYNTYWVPLENWL 241
Query: 250 SDNDL 254
+ DL
Sbjct: 242 GEKDL 246
>ref|NP_406898.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC92667.1| (AJ414157) conserved hypothetical protein [Yersinia pestis]
Length = 636
Score = 65.9 bits (159), Expect = 5e-10
Identities = 67/235 (28%), Positives = 104/235 (43%), Gaps = 39/235 (16%)
Query: 21 YQIPIYQRPYQWTEENCEKLLDDL---FFNYE--DDRE------GDYFCGSLVLIAISKD 69
+ I YQR Y+W +EN ++LL DL FF+Y DD G+YF GS++ +SK
Sbjct: 32 FSIDEYQREYKWEKENIDELLSDLQGKFFSYSKPDDETSAVSSYGEYFLGSII---VSKR 88
Query: 70 SKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRLSFNTI 129
+ ++DGQQR+++ LL L LY ++G T + + +
Sbjct: 89 NNKNY--LIDGQQRVTSLTLL---LICLYRAA--------QEKGLPVAQTLAPLIFSDNL 135
Query: 130 GS-NAEYDFQDAL---------EHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNIN 179
G D + L E FN K+++ + Y + + + LM + +
Sbjct: 136 GKPKFNLDISERLPVINALFKGEAFNPD--GKDESIQTMYARYSDIEVNDLMAELGDALP 193
Query: 180 DFIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFKGELLKHAKEHE 234
FI WL + V I I N A IF +N RG PL+ D+ K LL +E +
Sbjct: 194 HFIYWLLTRVGLIEIATDNDSYAYAIFETMNDRGKPLSPVDMLKAYLLAPIEEQD 248
>ref|NP_313331.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG59526.1|AE005665_8 (AE005665) orf; conserved hypothetical protein [Escherichia coli
O157:H7 EDL933]
dbj|BAB38727.1| (AP002569) hypothetical protein [Escherichia coli O157:H7]
Length = 293
Score = 64.7 bits (156), Expect = 1e-09
Identities = 61/254 (24%), Positives = 109/254 (42%), Gaps = 16/254 (6%)
Query: 4 IESNDSHLRGILKDELYYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVL 63
+++ ++ L LK + IPIYQR Y WTE+ C +L DD+ + D +F GS+V
Sbjct: 1 MKATEARLLDFLKRSQQFVIPIYQRTYSWTEQQCRQLWDDIIRAGKRDDISAHFIGSVVY 60
Query: 64 I--AISKDSKATTYDVVDGQQRLSTFILLAKVLADLY--NDCLDPKNLEHLQEGWKDRHT 119
I + + S + V+DGQQRL+T +LL + L+ ++ D + L+ +
Sbjct: 61 IEQGLYQVSGISPLLVIDGQQRLTTAMLLIEALSRHLGEDEVFDGFSAMKLRNYYLLNPY 120
Query: 120 ERKRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNIN 179
E F + + + D AL Q +N + ++N + + K +
Sbjct: 121 ESGEKGFKLLLTETDKDSLLAL----IKQRPMPENYSHRIMENFTFFDEQIAKLG----D 172
Query: 180 DFIEWLYSNVKFITI---ICPNIDKALRIFNVLNARGLPLNATDIFKGELLKHAK-EHER 235
D I K + + + D IF +N+ G L+ D+ + +L + EH+
Sbjct: 173 DLIPLCRGLAKLLIVDVALNRGQDNPQLIFESMNSTGKALSQADLVRNFILMGLEPEHQT 232
Query: 236 EEFVSRWNALSQKC 249
+ W + C
Sbjct: 233 RLYEDHWRPMEVAC 246
>ref|NP_290960.1| (NC_002655) Uncharacterized conserved protein [Escherichia coli
O157:H7 EDL933]
Length = 697
Score = 64.7 bits (156), Expect = 1e-09
Identities = 61/254 (24%), Positives = 109/254 (42%), Gaps = 16/254 (6%)
Query: 4 IESNDSHLRGILKDELYYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVL 63
+++ ++ L LK + IPIYQR Y WTE+ C +L DD+ + D +F GS+V
Sbjct: 1 MKATEARLLDFLKRSQQFVIPIYQRTYSWTEQQCRQLWDDIIRAGKRDDISAHFIGSVVY 60
Query: 64 I--AISKDSKATTYDVVDGQQRLSTFILLAKVLADLY--NDCLDPKNLEHLQEGWKDRHT 119
I + + S + V+DGQQRL+T +LL + L+ ++ D + L+ +
Sbjct: 61 IEQGLYQVSGISPLLVIDGQQRLTTAMLLIEALSRHLGEDEVFDGFSAMKLRNYYLLNPY 120
Query: 120 ERKRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNIN 179
E F + + + D AL Q +N + ++N + + K +
Sbjct: 121 ESGEKGFKLLLTETDKDSLLAL----IKQRPMPENYSHRIMENFTFFDEQIAKLG----D 172
Query: 180 DFIEWLYSNVKFITI---ICPNIDKALRIFNVLNARGLPLNATDIFKGELLKHAK-EHER 235
D I K + + + D IF +N+ G L+ D+ + +L + EH+
Sbjct: 173 DLIPLCRGLAKLLIVDVALNRGQDNPQLIFESMNSTGKALSQADLVRNFILMGLEPEHQT 232
Query: 236 EEFVSRWNALSQKC 249
+ W + C
Sbjct: 233 RLYEDHWRPMEVAC 246
>ref|NP_245531.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02678.1| (AE006095) unknown [Pasteurella multocida]
Length = 433
Score = 62.8 bits (151), Expect = 4e-09
Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 53/232 (22%)
Query: 19 LYYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVLIAISKDSKATTYDVV 78
L +IP YQRPY+W++++ +LL+DLF ++++ R Y G++VL +D+ +V
Sbjct: 18 LSLKIPNYQRPYKWSQKHTSQLLEDLFAHFKESR--PYRIGTIVL---HQDNNLLY--IV 70
Query: 79 DGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRLSFNTIGSNAEYDFQ 138
DGQQR++T +L L + +N +F
Sbjct: 71 DGQQRITTLAILLHFLKE----------------------------------NNIASEFL 96
Query: 139 DALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLYSNVKFITIICPN 198
++F+ K N ++ ++ + ++F +++ N + + +
Sbjct: 97 SDDKYFHSESIKHLKENAETI--------EHFVQYHYRCKDNFYDFILKNCSMVYVKLVS 148
Query: 199 IDKALRIFNVLNARGLPLNATDIFKG---ELLKHAKEHEREEFVSRW-NALS 246
+++A + F+ NARG PL D+ K L K E + V +W NA+S
Sbjct: 149 LEEAFQFFDSQNARGKPLAPYDLLKAYHLRSLSTEKSAEVLDCVEKWENAIS 200
>gb|AAM11681.2|AF493796_1 (AF493796) T4-exclusion protein stimulator gIBEGs [Escherichia
coli]
Length = 313
Score = 61.2 bits (147), Expect = 1e-08
Identities = 79/286 (27%), Positives = 123/286 (42%), Gaps = 44/286 (15%)
Query: 4 IESNDSHLRGILKDELYYQIPIYQRPYQWTEEN-CEKLLDDLFFNYEDDREG----DYFC 58
++S ++ I +++ Y++P YQR Y WT+ N LL+D+F + G +F
Sbjct: 1 MKSETLTIQQIFQNQRQYRVPFYQRAYVWTQRNQWSALLEDIFEKAQSRLSGTKPTPHFL 60
Query: 59 GSLVLIAISKDS--KATTYDVVDGQQRLST--FIL--LAKV-----------LADLYNDC 101
G++VL K+S T ++DGQQRL+T +IL LA + L L C
Sbjct: 61 GAVVLEPQLKNSLLGVDTIHIIDGQQRLTTLQYILASLASIRLSLRATGLSELEGLVLTC 120
Query: 102 LDPKNLEHLQ----EGWKDRHTERKRLSFNTIGSNAEYDFQDALEHFNDS---QASKNKN 154
L N ++ E +K T R + F I S + D F+DS + K+
Sbjct: 121 LKNTNEATMRNKKVECFKLWPTFRDQTHF--IQSLNVDNIDDLRNVFSDSFTQHGTLRKH 178
Query: 155 NKNNYLKNAICLKDYLMKKEIK--------NINDFIEWLYSNVKFITIICPNIDKALRIF 206
+ A+ K IK N IE + +++K ++I D A IF
Sbjct: 179 FNHPPSLEALWFFTEAFIKWIKIENHSPQENAVALIEAVLTDLKLVSIFLEAEDDAQIIF 238
Query: 207 NVLNARGLPLNATDIFKGELLKHAKEHER----EEFVSRWNALSQK 248
LN RG L+ATD+ + + A EHE E + + W K
Sbjct: 239 ETLNGRGAELHATDLIRNYIFMCA-EHENINAIELYENEWKIFEDK 283
>ref|NP_290966.1| (NC_002655) orf; conserved hypothetical protein [Escherichia coli
O157:H7 EDL933]
ref|NP_313337.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG59533.1|AE005666_5 (AE005666) orf; conserved hypothetical protein [Escherichia coli
O157:H7 EDL933]
dbj|BAB38733.1| (AP002569) hypothetical protein [Escherichia coli O157:H7]
Length = 452
Score = 60.8 bits (146), Expect = 1e-08
Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 141 LEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLYSNVKFITIICPNID 200
L+ D + K + + ++ NA ++DYL++ + + +++ NV + + +
Sbjct: 35 LQDSKDYKPEKPSDTELVFISNAETIRDYLLRLSVDELKLLAKYILQNVYIVFVQTDDFA 94
Query: 201 KALRIFNVLNARGLPLNATDIFKGELLKHAKEHER--EEFVSRWNAL 245
+ R+FNVLN+RGLPL+ D+ K L + A H + E+ S W+ +
Sbjct: 95 SSFRLFNVLNSRGLPLSNADLLKNALFESASTHNKKSEQIESAWSQI 141
>ref|NP_599965.1| (NC_003450) COG1479:Uncharacterized ACR [Corynebacterium
glutamicum]
dbj|BAB98127.1| (AP005276) Uncharacterized ACR [Corynebacterium glutamicum ATCC
13032]
Length = 811
Score = 58.5 bits (140), Expect = 7e-08
Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 19/249 (7%)
Query: 22 QIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVLIAISKDSKATTYDVVDGQ 81
+IP+YQR Y WTE+ C +L DDL +++ +F G++V K + T+ V+DGQ
Sbjct: 20 EIPVYQRNYDWTEKQCSRLFDDLSEVVKENHR-QHFFGAVV----GKPQGSWTWVVIDGQ 74
Query: 82 QRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRLSFNTIGSNAEYDFQDAL 141
QRL+T L L L +E + + + + S E + + L
Sbjct: 75 QRLTTISLFMLALV----HSLRASEVEEGEFNAGYNIDLATLIEDDYLRSGNEGNLKFKL 130
Query: 142 EHF-NDSQA-SKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIE---W-LYSNVKFITII 195
+ ND++A K ++ +++++ +Y + + D W ++ + +
Sbjct: 131 KPVKNDNEAYQKLFGPESEFIESSNLTANYRYFRNVLKATDLTAAQLWEAIEKLRVMYLD 190
Query: 196 CPNIDKALRIFNVLNARGLPLNATDIFKGELLKHAKEHEREE-FVSRWNALSQKCSDNDL 254
D RIF LN+ GL L+ D + +L + +E+ + RWN + + C D
Sbjct: 191 LEEFDDPQRIFESLNSTGLELSEADKVRNLVLMDQELKTQEKLYEQRWNPI-EVCVKFD- 248
Query: 255 TMETLFSWY 263
+ WY
Sbjct: 249 -TDNFIRWY 256
>ref|NP_207310.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64584 hypothetical protein HP0513 - Helicobacter pylori (strain 26695)
gb|AAD07579.1| (AE000565) H. pylori predicted coding region HP0513 [Helicobacter
pylori 26695]
Length = 658
Score = 58.5 bits (140), Expect = 7e-08
Identities = 53/216 (24%), Positives = 102/216 (46%), Gaps = 25/216 (11%)
Query: 56 YFCGSLVLIAISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWK 115
+F GS++ + S T ++DGQQRL+T LL L + ++ +E L++
Sbjct: 4 HFIGSILYVLDSNTHSNNTLLIIDGQQRLTTITLLLIALRNHLSE-----EVEILEK--- 55
Query: 116 DRHTERKRLSFNTIGSNAEYDFQDAL---EHFNDSQASKNKNNKNNYLKNAICLKD--YL 170
RK + I SN + D + L E D+ S NK + ++ + + L
Sbjct: 56 ---FSRKEIESYLINSNKDGDKKFRLILSESDKDTLLSLIDKNKRKPSEPSVKIVENFEL 112
Query: 171 MKKEIKNINDFIEWLYSNVKFITIICPNIDKA----LRIFNVLNARGLPLNATDIFKGEL 226
+K I D +E ++ +K + I+ ++DK IF +N++ + L TD+ + +
Sbjct: 113 FEKWISENTDKLETIFKGLKKLMIVWISLDKGKDDPQLIFESMNSKDIELTQTDLIRNYI 172
Query: 227 LKHAKEHEREEFVSR-WNALSQKCSDNDLTMETLFS 261
+ + ++E+F ++ W A+ ++ N ETLF+
Sbjct: 173 VMETEVEKQEDFYNQYWRAMEERFEQN----ETLFN 204
>ref|NP_207423.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64598 hypothetical protein HP0629 - Helicobacter pylori (strain 26695)
gb|AAD07700.1| (AE000577) H. pylori predicted coding region HP0629 [Helicobacter
pylori 26695]
Length = 681
Score = 57.8 bits (138), Expect = 1e-07
Identities = 30/79 (37%), Positives = 46/79 (57%), Gaps = 7/79 (8%)
Query: 21 YQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVLIAISKDS-----KATTY 75
+ IP+YQR Y W E+NCEKLL D+ ++ + +F GS+ I D K +
Sbjct: 19 FSIPVYQRNYTWEEKNCEKLLQDIISISQNKK--THFMGSITYILHWIDDEKSLRKLQEF 76
Query: 76 DVVDGQQRLSTFILLAKVL 94
++DGQQR++T +LL K +
Sbjct: 77 VIIDGQQRITTLMLLLKAI 95
>ref|NP_231402.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||G82160 conserved hypothetical protein VC1767 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94916.1| (AE004253) conserved hypothetical protein [Vibrio cholerae]
Length = 470
Score = 51.6 bits (122), Expect = 9e-06
Identities = 51/232 (21%), Positives = 87/232 (36%), Gaps = 68/232 (29%)
Query: 23 IPIYQRPYQWTEENCEKLLDDLFFNYE------DDREGDYFCGSLVLIAISKDSKATTYD 76
IP YQRPY+W EE +LL D + + + ++ GS++L + +
Sbjct: 36 IPEYQRPYRWNEEQITRLLKDFKLHQQELNDKLETEHCPFYLGSVIL-----HQQGDKLN 90
Query: 77 VVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRLSFNTIGSNAEYD 136
++DGQQRL+T L++ + ++H + K
Sbjct: 91 IIDGQQRLTTMALMSYL---------------------ANKHVDLK-------------- 115
Query: 137 FQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLYSNVKFITIIC 196
L + + + K+N +N L D DF + + ++
Sbjct: 116 ----LVYESPESQQQIKHNLGWLYRNEASLADI----------DF-----AQINITLVVT 156
Query: 197 PNIDKALRIFNVLNARGLPLNATDIFKGELLKHAKEHER---EEFVSRWNAL 245
+ D+A R F N G+ L DI K L+ E ++ F +RW AL
Sbjct: 157 DSEDEAYRFFETQNTGGVRLAGPDIIKAHHLRAVDEKDKSAVNTFATRWEAL 208
>ref|NP_489196.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB76855.1| (AP003598) ORF_ID:alr5156~hypothetical protein [Nostoc sp. PCC
7120]
Length = 168
Score = 51.2 bits (121), Expect = 1e-05
Identities = 29/95 (30%), Positives = 45/95 (46%), Gaps = 7/95 (7%)
Query: 21 YQIPIYQRPYQWTEENCEKLLDDLFFNYED-----DREGDYFCGSLVLIA--ISKDSKAT 73
+++P YQR + W +E + + DL Y ++ +F G LV I I
Sbjct: 20 FKVPKYQRAFDWEQEEIDDFIKDLLVLYNSRKINPNQPRKHFFGGLVSIKQHIPNSYTGN 79
Query: 74 TYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLE 108
YD+VDGQQRL+TF L L + + + +E
Sbjct: 80 LYDLVDGQQRLATFTLTIASLVNAFESLANESEIE 114
>ref|NP_326018.1| (NC_002771) conserved hypothetical protein [Mycoplasma pulmonis]
emb|CAC13360.1| (AL445563) conserved hypothetical protein [Mycoplasma pulmonis]
Length = 963
Score = 50.8 bits (120), Expect = 2e-05
Identities = 62/249 (24%), Positives = 108/249 (42%), Gaps = 50/249 (20%)
Query: 22 QIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVLIAISKDSKATTYDVVDGQ 81
+IPI+QR + W LL D+ N + + + F GS++ + K K ++DGQ
Sbjct: 299 KIPIFQRKFSWDWSIITNLLSDI--NNKKEHKSFIFLGSIITVEEDKILK-----IIDGQ 351
Query: 82 QRLSTFILLAKVLADL-YNDCLDPKNLEHLQEGWKDRHTERKRLSF-------------- 126
QR+ST L+ L+ + ++ N E+L +G+ ++ + + F
Sbjct: 352 QRISTLFLIFVALSIFSVKNKVEKWNFENLIDGFDSQNDDLAKKIFMCLEVLYESVNDQK 411
Query: 127 --NTIGSNAEY--DFQDALEHFNDSQASKNKNNK------NNYLKNAICL-----KDYLM 171
T+ SN Y D D +E F+ S NK K NN +K + + ++
Sbjct: 412 GEKTVLSNYFYRIDGYDDVEIFSKIW-SLNKLEKEMLEKENNIIKIFVDIIIWFRENLTS 470
Query: 172 KKEIKNI-NDFIEWLY---SNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFKGELL 227
K EI N F+E +Y +N+K I +F +N +PL+A D+ K +
Sbjct: 471 KDEILNFWKSFLENIYFTFTNLKDI--------NEFDLFERMNTTQVPLSAIDLIKNRIF 522
Query: 228 KHAKEHERE 236
+E + +
Sbjct: 523 DFYEEKDEK 531
>ref|NP_223672.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71866 hypothetical protein jhp0955 - Helicobacter pylori (strain J99)
gb|AAD06537.1| (AE001525) putative [Helicobacter pylori J99]
Length = 217
Score = 48.9 bits (115), Expect = 6e-05
Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 22/211 (10%)
Query: 21 YQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVLIAISKDSKATTYDVVDG 80
++IP YQR Y W + +DL + + Y SL L + + + + ++++DG
Sbjct: 15 FEIPSYQRGYAWQVRQWKDFWNDLEHVSKLGNKFHYM-HSLTLRGLENELEDSAFEIIDG 73
Query: 81 QQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRLSFNTIGSNAEYDF--- 137
QQRL+T ++L +LA K +H + + E LS+ G N +
Sbjct: 74 QQRLATSLILLGLLA---------KTTKHKDPKYNSMNLE-PVLSYKYYGLNEAFGAIMG 123
Query: 138 -QDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLYSNVKF-ITII 195
+ LE F S +KN + + K I ++ + + L + F + +
Sbjct: 124 EEKDLERFQTSFYAKNLIDAYAFFKEKI------SDTPMETLEKMFDVLTKKMLFSVAEL 177
Query: 196 CPNIDKALRIFNVLNARGLPLNATDIFKGEL 226
N F +N RG L+ ++FK L
Sbjct: 178 NDNRIDPFSSFETINNRGKDLSTLELFKNRL 208
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,415,115
Number of Sequences: 1026957
Number of extensions: 7470315
Number of successful extensions: 23529
Number of sequences better than 1.0e-02: 32
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 23461
Number of HSP's gapped (non-prelim): 40
length of query: 271
length of database: 324,149,939
effective HSP length: 119
effective length of query: 152
effective length of database: 201,942,056
effective search space: 30695192512
effective search space used: 30695192512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 96 (41.6 bits)