BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646011|ref|NP_208192.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(235 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208192.1| (NC_000915) conserved hypothetical protein... 479 e-135
ref|NP_224143.1| (NC_000921) putative [Helicobacter pylori ... 450 e-126
ref|NP_634315.1| (NC_003901) Zinc metalloprotease [Methanos... 174 7e-43
ref|NP_346969.1| (NC_003030) Predicted metal-dependent hydr... 98 7e-20
ref|NP_634625.1| (NC_003901) Zinc metalloprotease [Methanos... 95 7e-19
ref|NP_638254.1| (NC_003902) conserved hypothetical protein... 85 6e-16
ref|NP_618386.1| (NC_003552) conserved hypothetical protein... 85 8e-16
gb|AAM08233.1| (AF410854) unknown [Legionella pneumophila] 82 5e-15
ref|NP_070535.1| (NC_000917) hypothetical protein [Archaeog... 77 2e-13
ref|NP_279256.1| (NC_002607) Vng0110c [Halobacterium sp. NR... 69 6e-11
ref|NP_561719.1| (NC_003366) hypothetical protein [Clostrid... 67 1e-10
ref|NP_603843.1| (NC_003454) Zinc metalloprotease [Fusobact... 66 3e-10
ref|NP_281803.1| (NC_002163) hypothetical protein Cj0620 [C... 64 1e-09
ref|NP_326157.1| (NC_002771) conserved hypothetical protein... 61 9e-09
ref|NP_276076.1| (NC_000916) unknown [Methanothermobacter t... 60 3e-08
ref|NP_360041.1| (NC_003103) unknown [Rickettsia conorii] >... 59 4e-08
ref|NP_654268.1| (NC_003995) DUF45, Protein of unknown func... 59 4e-08
ref|NP_578408.1| (NC_003413) hypothetical protein [Pyrococc... 58 1e-07
gb|AAD24685.1|AF083877_5 (AF083877) unknown [Erwinia amylov... 57 1e-07
ref|NP_617886.1| (NC_003552) conserved hypothetical protein... 57 2e-07
gb|AAM46140.1|AF380136_1 (AF380136) metalloprotease [Helico... 55 6e-07
ref|NP_207599.1| (NC_000915) hypothetical protein [Helicoba... 55 6e-07
ref|NP_297587.1| (NC_002488) hypothetical protein [Xylella ... 54 1e-06
ref|NP_142658.1| (NC_000961) hypothetical protein [Pyrococc... 54 1e-06
ref|NP_223460.1| (NC_000921) putative [Helicobacter pylori ... 52 5e-06
ref|NP_540932.1| (NC_003317) zinc metallopeptidases [Brucel... 52 7e-06
ref|NP_127009.1| (NC_000868) hypothetical protein [Pyrococc... 50 3e-05
ref|NP_105795.1| (NC_002678) hypothetical protein [Mesorhiz... 49 6e-05
ref|NP_541426.1| (NC_003318) zinc metallopeptidases [Brucel... 49 6e-05
ref|NP_384132.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 49 6e-05
ref|NP_518642.1| (NC_003295) HYPOTHETICAL PROTEIN [Ralstoni... 48 8e-05
ref|NP_275026.1| (NC_003112) conserved hypothetical protein... 45 5e-04
ref|NP_078157.1| (NC_002162) conserved hypothetical [Ureapl... 45 5e-04
ref|NP_661599.1| (NC_002932) zinc protease, putative [Chlor... 43 0.003
ref|NP_629342.1| (NC_003888) hypothetical protein [Streptom... 43 0.003
sp|O42287|ITN1_XENLA Intersectin 1 >gi|7512152|pir||T09194 ... 42 0.004
ref|NP_283232.1| (NC_003116) hypothetical protein NMA0403 [... 42 0.006
gb|AAD24686.1|AF083877_6 (AF083877) unknown [Erwinia amylov... 42 0.006
ref|NP_273283.1| (NC_003112) conserved hypothetical protein... 42 0.006
ref|NP_282887.1| (NC_003116) hypothetical protein NMA0032 [... 42 0.006
gb|AAD38302.1|AF036242_2 (AF036242) unknown [Neisseria meni... 41 0.010
ref|NP_353056.1| (NC_003062) AGR_C_25p [Agrobacterium tumef... 41 0.010
>ref|NP_208192.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||A64695 conserved hypothetical protein HP1401 - Helicobacter pylori
(strain 26695)
gb|AAD08444.1| (AE000640) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 235
Score = 479 bits (1234), Expect = e-135
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MNAYCLTLNDTNIAIEKKDIKHLHISVCPPDGSVHVSCPLALNDESLRLSLIKRLHWIKE 60
MNAYCLTLNDTNIAIEKKDIKHLHISVCPPDGSVHVSCPLALNDESLRLSLIKRLHWIKE
Sbjct: 1 MNAYCLTLNDTNIAIEKKDIKHLHISVCPPDGSVHVSCPLALNDESLRLSLIKRLHWIKE 60
Query: 61 QQQNFLNQNRQSQRGMLERESHYLFGKRYLLKIEHTTKKHFVLQNPKYLILHVHQKTSLE 120
QQQNFLNQNRQSQRGMLERESHYLFGKRYLLKIEHTTKKHFVLQNPKYLILHVHQKTSLE
Sbjct: 61 QQQNFLNQNRQSQRGMLERESHYLFGKRYLLKIEHTTKKHFVLQNPKYLILHVHQKTSLE 120
Query: 121 NRLKVLENYYRQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLE 180
NRLKVLENYYRQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLE
Sbjct: 121 NRLKVLENYYRQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLE 180
Query: 181 LAKVPRKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLKETYLERS 235
LAKVPRKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLKETYLERS
Sbjct: 181 LAKVPRKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLKETYLERS 235
>ref|NP_224143.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71808 hypothetical protein jhp1425 - Helicobacter pylori (strain J99)
gb|AAD07006.1| (AE001565) putative [Helicobacter pylori J99]
Length = 235
Score = 450 bits (1158), Expect = e-126
Identities = 223/235 (94%), Positives = 227/235 (95%)
Query: 1 MNAYCLTLNDTNIAIEKKDIKHLHISVCPPDGSVHVSCPLALNDESLRLSLIKRLHWIKE 60
MNAYCLTLN+TNIAIEKKDIKHLHISVCPPDGSVHVSCPLALNDESLRLSLIKRL WIKE
Sbjct: 1 MNAYCLTLNNTNIAIEKKDIKHLHISVCPPDGSVHVSCPLALNDESLRLSLIKRLPWIKE 60
Query: 61 QQQNFLNQNRQSQRGMLERESHYLFGKRYLLKIEHTTKKHFVLQNPKYLILHVHQKTSLE 120
QQQNFLNQNRQSQR MLERESHYLFGKRYLLKIEHT KKHFVLQ+PK LILHVHQKTSLE
Sbjct: 61 QQQNFLNQNRQSQREMLERESHYLFGKRYLLKIEHTIKKHFVLQSPKCLILHVHQKTSLE 120
Query: 121 NRLKVLENYYRQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLE 180
NRLKVLENYYRQVLREKIQT IN+YEKILNESIQSFKIQKMKRIWGSCNIAKR LLFNLE
Sbjct: 121 NRLKVLENYYRQVLREKIQTYINQYEKILNESIQSFKIQKMKRIWGSCNIAKRTLLFNLE 180
Query: 181 LAKVPRKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLKETYLERS 235
LAK PRKGIEYVVVHELLHLK RHHNEYFRDLLSLYLP+WQRAKASLKETYLERS
Sbjct: 181 LAKAPRKGIEYVVVHELLHLKARHHNEYFRDLLSLYLPDWQRAKASLKETYLERS 235
>ref|NP_634315.1| (NC_003901) Zinc metalloprotease [Methanosarcina mazei Goe1]
gb|AAM31987.1| (AE013471) Zinc metalloprotease [Methanosarcina mazei Goe1]
Length = 238
Score = 174 bits (441), Expect = 7e-43
Identities = 83/224 (37%), Positives = 135/224 (60%)
Query: 6 LTLNDTNIAIEKKDIKHLHISVCPPDGSVHVSCPLALNDESLRLSLIKRLHWIKEQQQNF 65
+ L D + + KDIK++H+SV PP+G V +S PL ++ +++R+ I RL WIK+Q++ F
Sbjct: 5 IELGDITVDVVLKDIKNIHLSVYPPNGRVKISAPLRMDIDTIRVFAISRLGWIKQQRKKF 64
Query: 66 LNQNRQSQRGMLERESHYLFGKRYLLKIEHTTKKHFVLQNPKYLILHVHQKTSLENRLKV 125
Q R++ R L+ ESHY++GKRYLLK+ + V +IL V T + R +
Sbjct: 65 QEQERETPREYLDLESHYVWGKRYLLKVIEVNEAPSVELKHSKMILRVRPGTDDKKRQSI 124
Query: 126 LENYYRQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVP 185
++ +YR+ L++ I I R+E +L ++ F +Q+M+ WGSCN R + N ELAK P
Sbjct: 125 IDAWYREQLKKAIPPLIARWEPLLGVKVERFFVQRMRTKWGSCNHKARNIRLNTELAKKP 184
Query: 186 RKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLKE 229
+ +EY +VHE+ H+ HN +F L+ ++P WQ + L +
Sbjct: 185 EECLEYTIVHEMAHILEPTHNSHFITLMDQFMPKWQFCRDRLNQ 228
>ref|NP_346969.1| (NC_003030) Predicted metal-dependent hydrolase [Clostridium
acetobutylicum]
gb|AAK78309.1|AE007547_6 (AE007547) Predicted metal-dependent hydrolase [Clostridium
acetobutylicum]
Length = 259
Score = 98.2 bits (243), Expect = 7e-20
Identities = 58/220 (26%), Positives = 119/220 (53%), Gaps = 10/220 (4%)
Query: 14 AIEKKDIKHLHISVCPPDGSVHVSCPLALNDESLRLSLIKRLHWIKEQQ---QNFLNQNR 70
++ +K+ K + ISV D ++ V P + +E ++ + K++ WI +Q +N ++ N
Sbjct: 38 SLVRKERKSIKISV-NRDFTIEVIAPFNVAEEEIKNVVYKKMKWIIKQMKRMENIIDINE 96
Query: 71 QSQRGMLERESHYLFGKRYLLKIEHTTKKHFVLQNPKYLILHVHQKTSLENRLKVLENYY 130
+ + + ++ Y+FG Y L ++ K + + +++ +K + E + E +Y
Sbjct: 97 EIKYS--DGDAFYIFGTPYRLIVKKGIKNKMRIFGEN-VYMYIKEKDNYEYKKNYAEKWY 153
Query: 131 RQVLREKIQTCINRYEKILNESIQS---FKIQKMKRIWGSCNIAKRALLFNLELAKVPRK 187
+++ +++ N KI +E I+KMK WGS + A ++ N +L K+P+
Sbjct: 154 KKIAAIELEYLYNEKYKIFDEIYDEKPKLCIRKMKSKWGSYSPADNKVVLNTQLVKIPKT 213
Query: 188 GIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASL 227
IEYV++HEL H+K R+H + F + ++ ++P+W+ K SL
Sbjct: 214 CIEYVIIHELCHVKFRNHRKEFYNYVNNFMPDWKLKKESL 253
>ref|NP_634625.1| (NC_003901) Zinc metalloprotease [Methanosarcina mazei Goe1]
gb|AAM32297.1| (AE013504) Zinc metalloprotease [Methanosarcina mazei Goe1]
Length = 245
Score = 94.7 bits (234), Expect = 7e-19
Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 8/210 (3%)
Query: 27 VCPPDGSVHVSCPLALNDESLRLSLIKRLHWIKEQQQNF-LNQNRQSQRGMLERESHYLF 85
V PD SV P L+ E++R + K+ W++E+ F +N+ ++ + E
Sbjct: 30 VVRPDLSVEFRAPHGLSREAIREMVQKKAAWVQEKLDWFEVNRLPCQEKEYTDGEKFLYL 89
Query: 86 GKRYLLKI--EHTTKKHFVLQNPKYLILHVHQKTSLENR----LKVLENYYRQVLREKIQ 139
GK Y L + KK F + + + + + E + K + N+Y + ++++
Sbjct: 90 GKEYPLTVLPVEGIKKAFASFSGSEITVLLPEPAPEELKPSLVKKAVWNFYSECAEKEVE 149
Query: 140 TCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLH 199
+ Y +ILN I +FK++ K+ WGSC+ A L N +L P + +EYVVVHE+ H
Sbjct: 150 KFLKAYAEILNIDIPAFKVKHQKKRWGSCS-ADNVLRINFQLMMAPPEQLEYVVVHEICH 208
Query: 200 LKTRHHNEYFRDLLSLYLPNWQRAKASLKE 229
+K ++H+ F DL+ +P +Q + SLK+
Sbjct: 209 VKEKNHSVKFWDLVGELMPGYQVHRKSLKK 238
>ref|NP_638254.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM42178.1| (AE012404) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 248
Score = 85.1 bits (209), Expect = 6e-16
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 5/201 (2%)
Query: 30 PDGSVHVSCPLALNDESLRLSLIKRLHWIKEQQQNFLNQNRQ-SQRGMLERESHYLFGKR 88
PDG V + PL D +R +L +R WI + R + R + E+ G+R
Sbjct: 40 PDGCVRLDAPLQATDTQIRRALTRRARWIHLHLVEIEQRLRHVTPREYVSGETVLYLGRR 99
Query: 89 YLLKIEHTTKKHFVLQNPKYLILHVHQKTSLENRLKVLENYYRQVLREKIQTCINRYEKI 148
Y LK+ + H V Y+ V + R LE++ R+ R I +
Sbjct: 100 YRLKVILDDQMHDVRLRCGYVEARVPSRAPEVVRA-ALEDWQRERARLLIPQRVANMAAQ 158
Query: 149 LN--ESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLHLKTRHHN 206
L + + ++ M+R WGSC+ + R L NL L +VP I+YV++HEL HLK +H
Sbjct: 159 LRWIKQMPPLSLRMMQRQWGSCSPSGRISL-NLGLIRVPGACIDYVILHELCHLKIHNHG 217
Query: 207 EYFRDLLSLYLPNWQRAKASL 227
+ F LL ++P W+ K L
Sbjct: 218 KAFYRLLDAHMPGWREIKQRL 238
>ref|NP_618386.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM06866.1| (AE011059) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 245
Score = 84.7 bits (208), Expect = 8e-16
Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 8/210 (3%)
Query: 27 VCPPDGSVHVSCPLALNDESLRLSLIKRLHWIKEQQQNF-LNQNRQSQRGMLERESHYLF 85
V PD V P L+ E++R L K+ W++E+ F N+ ++ E E +
Sbjct: 30 VVRPDLKVEFRAPHGLSLEAIRDMLQKKAGWVQEKLDWFEANRLPGQEKRYTEGEIYLYM 89
Query: 86 GKRYLLKI--EHTTKKHFVLQNPKYLILHVHQKTSLENR----LKVLENYYRQVLREKIQ 139
G+ Y LKI KK N L + + + E R K + ++YR+ ++
Sbjct: 90 GREYPLKILAGKGIKKPLASFNGAELTVLIPEAVPEELRPVLVKKAVWDFYRECAESNVE 149
Query: 140 TCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLH 199
+ Y + L + FK++ KR WGSC+ A + N +L P + +EYVVVHEL H
Sbjct: 150 RLLKIYSEKLKIAPPIFKVKYQKRRWGSCS-ADNVIRINFQLMMAPPEQLEYVVVHELCH 208
Query: 200 LKTRHHNEYFRDLLSLYLPNWQRAKASLKE 229
+K ++H+ F L+ +P ++ + SLK+
Sbjct: 209 VKEKNHSFRFWKLVGGLMPGYEIHRKSLKK 238
>gb|AAM08233.1| (AF410854) unknown [Legionella pneumophila]
Length = 243
Score = 82.0 bits (201), Expect = 5e-15
Identities = 55/208 (26%), Positives = 102/208 (48%), Gaps = 19/208 (9%)
Query: 30 PDGSVHVSCPLALNDESLRLSLIKRLHWIKEQQQNFLNQNRQS-QRGMLERESHYLFGKR 88
PD V V P + + + +++ KR W+ + F +Q R + ESHY G++
Sbjct: 35 PDCQVIVFAPPSATHDEIIVAVNKRAKWVYNKLHIFRSQQEYIIPRQYISGESHYYLGRK 94
Query: 89 YLLKIEHTTKKHFVLQNPKYLI----LHVHQKTSLENRLKVLENYYRQVLREKIQTCINR 144
Y+LK+ +K P+ + L + ++E+R ++L +Y+Q + + R
Sbjct: 95 YVLKVIEDSKA-----KPQVKLVRGQLQIIAARNIEHRRQLLSEWYKQ---KAFEVFSKR 146
Query: 145 YEKILN-----ESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLH 199
+++L+ + + ++ M+ WGSC + + L N L K P I+YV++HEL H
Sbjct: 147 LDQLLSTAPWIKERPTIHLRAMRSRWGSCAVNGKITL-NTHLIKAPTACIDYVILHELCH 205
Query: 200 LKTRHHNEYFRDLLSLYLPNWQRAKASL 227
+H++ F LL+ PNW++ K L
Sbjct: 206 HSEHNHSDKFYRLLNQVSPNWKQVKQYL 233
>ref|NP_070535.1| (NC_000917) hypothetical protein [Archaeoglobus fulgidus]
pir||B69463 hypothetical protein AF1707 - Archaeoglobus fulgidus
gb|AAB89540.1| (AE000985) A. fulgidus predicted coding region AF1707
[Archaeoglobus fulgidus]
Length = 219
Score = 77.0 bits (188), Expect = 2e-13
Identities = 57/222 (25%), Positives = 110/222 (48%), Gaps = 20/222 (9%)
Query: 12 NIAIEKKDIKHLHISVCPPDGSVHVSCPLALNDESLRLSLIKRLHWIKEQQQNFLNQNRQ 71
N+ +E+K+++++ I V DG V V P + +S + K WIK++
Sbjct: 2 NVVVERKNVRNVRIQVLA-DGKVRVVAPPDFDVDSF---ISKHADWIKKK---------- 47
Query: 72 SQRGMLERESHYLFGKRYLLKIEHTTKKHFVLQNPKYLILHVHQKTSLEN-RLKVLENYY 130
R +E + + GK +L + K + ++++ + I + ++ L+ L+
Sbjct: 48 --RAEIESLAEEIKGKERMLLLNG--KFYHLVKDSGFEIKEGEEVGVVKYYSLRNLKRNL 103
Query: 131 RQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIE 190
+LRE+++ ++ Y ++L + I+ K W SC+ +K L FNL +P K E
Sbjct: 104 ASILREELKRNVSFYSRLLGINYGRIFIKMQKTKWASCS-SKGNLSFNLASLALPEKLRE 162
Query: 191 YVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLKETYL 232
Y+VVHEL+HL H+ F + + Y P ++ A+ LK+ ++
Sbjct: 163 YIVVHELVHLLEPKHSRLFWETVGFYYPEYEEAERELKKYWI 204
>ref|NP_279256.1| (NC_002607) Vng0110c [Halobacterium sp. NRC-1]
gb|AAG18736.1| (AE004978) Vng0110c [Halobacterium sp. NRC-1]
Length = 241
Score = 68.6 bits (166), Expect = 6e-11
Identities = 49/183 (26%), Positives = 87/183 (46%), Gaps = 8/183 (4%)
Query: 41 ALNDESLRLSLIKRLHWIKEQQQNFLNQNRQSQRGMLERESHYLF-GKRYLLKIEHTTKK 99
A ++ES L + L+W+ E ++ + ++ E + + + G + + +E
Sbjct: 45 AESEESPEALLSENLNWVLETKRTYERHRERAPERRFEPGAAFPYLGDDHEIVVE-PRPA 103
Query: 100 HFVLQNPKYLILHVHQKTSLENRLK-VLENYYRQVLREKIQTCINRYEKILNESIQSFKI 158
H V + + Q T ++ LK VLEN+YR RE + + +N + ++
Sbjct: 104 HGVGDGE----IRLRQSTVDQSSLKRVLENFYRSRAREHLTDRTDALADSMNHTYDRIEL 159
Query: 159 QKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLP 218
+ + WGSC+ L FN L P I+YVVVHEL HL+ HN+ F L+ + +P
Sbjct: 160 RNQRTRWGSCS-TNGVLSFNWRLVMAPPDVIDYVVVHELAHLRESGHNDRFWRLVEMEIP 218
Query: 219 NWQ 221
++
Sbjct: 219 EYR 221
>ref|NP_561719.1| (NC_003366) hypothetical protein [Clostridium perfringens]
dbj|BAB80509.1| (AP003188) hypothetical protein [Clostridium perfringens]
Length = 125
Score = 67.4 bits (163), Expect = 1e-10
Identities = 36/110 (32%), Positives = 59/110 (52%), Gaps = 1/110 (0%)
Query: 120 ENRLKVLENYYRQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNL 179
E K +E +YR+ I+ + Y K +S K+++ KR WGSC LLFN
Sbjct: 10 ERLRKAIELWYREEGVRIIKDRVEHYLKFYPVKPRSIKVKEQKRRWGSCTYYND-LLFNW 68
Query: 180 ELAKVPRKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLKE 229
P K ++Y+VVHE+ H+ + H++ + + +S +PN++ K LKE
Sbjct: 69 RCIMAPLKVVDYIVVHEMTHMVHKDHSKNYWNFVSKIIPNYKEQKMWLKE 118
>ref|NP_603843.1| (NC_003454) Zinc metalloprotease [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL95142.1| (AE010602) Zinc metalloprotease [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 229
Score = 66.2 bits (160), Expect = 3e-10
Identities = 51/217 (23%), Positives = 105/217 (47%), Gaps = 11/217 (5%)
Query: 15 IEKKDIKHLHISVCPPDGSVHVSCPLALNDESLRLSLIKRLHWIKE--QQQNFLNQNRQS 72
+ KK IK+ I + P D + VS PL +++ + + + WI+ ++ + +N+ +
Sbjct: 18 VTKKKIKNFIIRIYP-DLRIAVSVPLLASNKDIENFVQNKKEWIETTLEKIKIVKENKNN 76
Query: 73 QRGMLERESHYLFGKRYLLKIEHTTKKHFVLQNPKYLILHVHQK-TSLENRLKVLENYYR 131
L+ + GK K+ + + L + ++++ K T K L +
Sbjct: 77 ----LKENVIKILGKEIEKKVIKSDLERIRLTDTS---IYIYSKDTGNAGIEKKLLEWKI 129
Query: 132 QVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEY 191
+ L+ + + Y K+LN +I ++I+K+ WG + + + FN +L + + IEY
Sbjct: 130 EKLKAILDEYLANYTKLLNRNINYYQIKKLSSAWGIYHKKENYISFNFDLIEKDIECIEY 189
Query: 192 VVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLK 228
VV+HEL H+ +H + F L+ Y+ +++ + LK
Sbjct: 190 VVLHELCHIFYMNHQKDFWSLVEKYMSDYKIRRKKLK 226
>ref|NP_281803.1| (NC_002163) hypothetical protein Cj0620 [Campylobacter jejuni]
pir||C81410 hypothetical protein Cj0620 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75256.1| (AL139075) hypothetical protein Cj0620 [Campylobacter jejuni]
Length = 215
Score = 63.9 bits (154), Expect = 1e-09
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 20/212 (9%)
Query: 17 KKDIKHLHISVCPPDGSVHVSCPLALNDESLRLSLIKRLHWIKEQQQNFLNQNRQSQRGM 76
KK IK L + + G +S P +S+ L K W+ E ++ F ++ +
Sbjct: 22 KKCIKTLRLRL-NEKGEFVLSIPYFCTFKSVYEFLDKSSSWMNEAKKRF-------EKKV 73
Query: 77 LERESHYLFGKRYLLKIEHTTKKHFVLQNPKYLILHVHQKTSLENRLKVLENYYRQVLRE 136
L+ + K+Y + + TKK + ++ K +N+ K L+ + RQ ++
Sbjct: 74 LKDDELIFLAKKYKIIFDENTKKTYFDKD----------KIICQNKAK-LDLFLRQNAKK 122
Query: 137 KIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHE 196
+ ++ + I+ MK WGSCN K + NL+L + + IEYV++HE
Sbjct: 123 IFTFYLKKWSQKTGLFYTHLSIKNMKTRWGSCNHNKAYVNLNLKLIQKSLRAIEYVILHE 182
Query: 197 LLHLKTRHHNEYFRDLLSLYLPNW-QRAKASL 227
+ HLK +H++ F + ++ ++ QR K L
Sbjct: 183 ISHLKFPNHSKEFYTFIEHFMSDFRQREKEFL 214
>ref|NP_326157.1| (NC_002771) conserved hypothetical protein [Mycoplasma pulmonis]
emb|CAC13499.1| (AL445564) conserved hypothetical protein [Mycoplasma pulmonis]
Length = 177
Score = 61.2 bits (147), Expect = 9e-09
Identities = 31/131 (23%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 98 KKHFVLQNPKYLILHVHQKTSLENRLKVLENYYRQVLREKIQTCINRYEK----ILNESI 153
+K F + LI+ K + ++ Y +++++E + +K I+
Sbjct: 44 RKTFFIYKNNILIIPDLSKVIRVKEYEKIDIYLKKIIKEIFLEYLKVRQKYWSLIMGVPE 103
Query: 154 QSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLHLKTRHHNEYFRDLL 213
S ++++ R W S ++K+ +++ L+ + + I+Y+++HEL H K ++H+ F ++
Sbjct: 104 HSIEVREKNRSWASNYVSKKKIVYALKSSSKSYEWIDYLIIHELAHYKEQNHSSNFWKIV 163
Query: 214 SLYLPNWQRAK 224
SLY PNW+ K
Sbjct: 164 SLYCPNWKAMK 174
>ref|NP_276076.1| (NC_000916) unknown [Methanothermobacter thermautotrophicus]
[Methanothermobacter thermautotrophicus str. Delta H]
pir||G69225 hypothetical protein MTH939 - Methanobacterium thermoautotrophicum
(strain Delta H)
gb|AAB85437.1| (AE000868) unknown [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 188
Score = 59.7 bits (143), Expect = 3e-08
Identities = 33/118 (27%), Positives = 62/118 (51%), Gaps = 3/118 (2%)
Query: 113 VHQKTSLENRLKVLENYYRQ--VLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNI 170
+H+ + R +E YR+ LR + ++ Y +L + ++M+ WGSC+
Sbjct: 59 IHEFHEMLERASDMELEYRRDKELRSLVSGFLDHYSDVLGVEYGRVRFRRMRSRWGSCS- 117
Query: 171 AKRALLFNLELAKVPRKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLK 228
++ L FN L+ +P + +EYVV+HEL HL+ +H+ F +L +P+ + L+
Sbjct: 118 SRGNLSFNTLLSHLPDRMVEYVVLHELAHLREMNHSPRFWGILESEMPDCTERRRMLR 175
>ref|NP_360041.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL02942.1| (AE008604) unknown [Rickettsia conorii]
Length = 230
Score = 58.9 bits (141), Expect = 4e-08
Identities = 47/214 (21%), Positives = 100/214 (45%), Gaps = 11/214 (5%)
Query: 15 IEKKDIKHLHISVCPPDGSVHVSCPLALNDESLRLSLIKRLHWIKEQQQNFLNQNRQSQR 74
I ++ K +I++ + PL + E L+ + +W++++ + + + +
Sbjct: 17 IVRRSSKAKNIAIRITSKGAELVLPLKVKAEKGHNFLLSQEYWVRQKLRRNVTAIPKDE- 75
Query: 75 GMLERESHYLFGKRYLLKIEHTTKKHFVLQNPKYLILHVHQKTSLENRLKVLENYYRQVL 134
+ + GK Y + ++K L + L V+ + + +L + E + ++ L
Sbjct: 76 -----DKISILGKSYEIIHIDSSKNQIKLNDST---LEVYCCSQVLKKLSI-EVFLKKKL 126
Query: 135 REKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVV 194
+I+ + K N + + +I + WGSC +K L+FN + P + ++Y+V
Sbjct: 127 LAEIKIIVENISKKHNLTYSNIRIMENVSRWGSC-CSKGNLVFNWRVVLAPFEVLKYLVA 185
Query: 195 HELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLK 228
HE+ HLK +H++ F +L+ P +Q AK LK
Sbjct: 186 HEMAHLKEMNHSKNFWELVEDIYPEYQPAKLWLK 219
>ref|NP_654268.1| (NC_003995) DUF45, Protein of unknown function DUF45 [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 154
Score = 58.9 bits (141), Expect = 4e-08
Identities = 30/112 (26%), Positives = 61/112 (53%), Gaps = 2/112 (1%)
Query: 111 LHVHQKTSLENRLK-VLENYYRQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCN 169
LH++ K + +++ L+ +Y + + + I ++ +S +I R WG+C+
Sbjct: 29 LHIYVKELKDEKIQQALKRFYYKQCKSLVGKSIKAHQSNFKTKPRSIRITDSSRTWGTCD 88
Query: 170 IAKRALLFNLELAKVPRKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQ 221
+ L FN +LA P++ I+YVVVHE+ H+ +H+ F L+ +P+++
Sbjct: 89 -SNLQLTFNWKLAMAPQRVIDYVVVHEMCHMVHLNHDRSFWRLVGKIMPDYK 139
>ref|NP_578408.1| (NC_003413) hypothetical protein [Pyrococcus furiosus DSM 3638]
gb|AAL80803.1| (AE010188) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 223
Score = 57.8 bits (138), Expect = 1e-07
Identities = 51/215 (23%), Positives = 104/215 (47%), Gaps = 27/215 (12%)
Query: 15 IEKKDIKHLHISVCPPDGSVHVSCPLALNDESLRLSLIKRLHWIKEQQQNFLNQNRQSQR 74
+ +K +K++ + V DG++ V PL ++ +R LIK+ WI + + + + ++
Sbjct: 16 VVEKPVKYVTLRVLE-DGTILVVTPL---EQIVREVLIKKKDWILSKI-SIVEEAKE--- 67
Query: 75 GMLERESHYLFGKRYLLKIEHTTKKHFVLQNPKYLILHVHQKTSLENRLKVLENYYRQVL 134
L R+ LFGK Y L++ K+ I + + ++ L N+ ++ +
Sbjct: 68 --LSRKGFPLFGKFYSLEM-----------GEKFEINREELRITFPG-IEFLRNWIKREI 113
Query: 135 REKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVV 194
+ K + K S + ++ M+ WGS K ++ N A +P + Y+V+
Sbjct: 114 KRKAR----EIAKDFGISPKRIYVKAMRTKWGSATWRK-SITLNFSSAALPEELFHYLVI 168
Query: 195 HELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLKE 229
HEL HL +H++ F L++ Y P++++ + LK+
Sbjct: 169 HELAHLIELNHSKRFWSLVASYHPDYKKKRRELKK 203
>gb|AAD24685.1|AF083877_5 (AF083877) unknown [Erwinia amylovora]
Length = 202
Score = 57.4 bits (137), Expect = 1e-07
Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 30 PDGSVHVSCPLALNDESLRLSLIKRLHWIKEQQQNFLNQNRQ-SQRGMLERESHYLFGKR 88
PD V V P +D+S+ ++ KR WI +Q + F NQ + R + ESHY GK+
Sbjct: 39 PDCRVVVFAPEEADDQSVLGAVKKRGRWIWQQLREFRNQREYITPRQYISGESHYYLGKQ 98
Query: 89 YLLKI-EHTTKKHFVLQNPKYLILHVHQKTSLENRLKVLENYYRQVLREKIQTCINRYEK 147
YLLK+ + V L + V QK EN ++L ++YR R+ + R E
Sbjct: 99 YLLKVLAEPGQIQRVKMLRGRLDVTVRQKEP-ENVRQLLSDWYRSRARDVFR---RRLEA 154
Query: 148 ILNESI-----QSFKIQKMKRIWGSCNIAKRALLFNLELAKVPR 186
+L +++ I M+ WGSC+ A R L N L K R
Sbjct: 155 MLEQALWVDVPPPLHILTMQTQWGSCSPAGR-LTLNPNLVKAHR 197
>ref|NP_617886.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM06366.1| (AE011002) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 130
Score = 56.6 bits (135), Expect = 2e-07
Identities = 30/101 (29%), Positives = 53/101 (51%), Gaps = 1/101 (0%)
Query: 128 NYYRQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRK 187
N+Y + + ++ +Y ++ KIQ +K WG+C+ + L FN +
Sbjct: 23 NFYHEKAEKVLKQRARKYLLYFDDKPSLIKIQTLKNKWGNCSKTNQ-LRFNWRVIMAKMS 81
Query: 188 GIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLK 228
I+YVVVHEL H K + H++ F + + LP+++ KA L+
Sbjct: 82 IIDYVVVHELCHTKYKDHSKAFWNEVQKILPDYEERKAWLR 122
>gb|AAM46140.1|AF380136_1 (AF380136) metalloprotease [Helicobacter pylori]
Length = 206
Score = 55.1 bits (131), Expect = 6e-07
Identities = 37/154 (24%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 89 YLLKIEHTTKKHFVLQNPKYLILHVHQKTSLENRLKVLE------NYYRQVLREKIQTCI 142
+L + E KK KY +LH +T +N++ V + +Y L++ ++T +
Sbjct: 44 FLKEQEAWLKKTLSAMQEKYSLLHSRLET-YQNKILVFDEVKNANDYTLTELKKILKTYL 102
Query: 143 NRYEKILNESIQS----FKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELL 198
+ + + +Q+ F ++ ++ GSC+ R L F L L ++ I+YV++HEL
Sbjct: 103 EQKLPLNAQKMQTSYTHFSVRNNAKVLGSCSYHNR-LSFALLLVCAQKEAIDYVIIHELA 161
Query: 199 HLKTRHHNEYFRDLLSLYLPNWQRAKASLKETYL 232
H ++H++ F + ++ PN++ + LK+ +
Sbjct: 162 HTIHKNHSKNFWRCVQIFCPNYRALREHLKQNII 195
>ref|NP_207599.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64620 hypothetical protein HP0806 - Helicobacter pylori (strain 26695)
gb|AAD07859.1| (AE000592) H. pylori predicted coding region HP0806 [Helicobacter
pylori 26695]
Length = 206
Score = 55.1 bits (131), Expect = 6e-07
Identities = 36/150 (24%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 89 YLLKIEHTTKKHFVLQNPKYLILHVH-----QKTSLENRLKVLENYYRQVLREKIQTCIN 143
+L + E KK F+ K+ +L + K + + +K +Y L++ ++T +
Sbjct: 44 FLKEQEAWLKKTFLSMQEKHSLLRTNLEKYQNKILVFDEVKNANDYTLTELKKILKTYLE 103
Query: 144 RYEKILNESIQS----FKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLH 199
+ ++ + +Q+ F I+ ++ GSC+ R L F L L ++ I+YV++HEL H
Sbjct: 104 QKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNR-LSFALLLVCAQKEAIDYVIIHELAH 162
Query: 200 LKTRHHNEYFRDLLSLYLPNWQRAKASLKE 229
++H++ F + ++ PN++ + LK+
Sbjct: 163 TIHKNHSKNFWRCVQIFCPNYRALRERLKQ 192
>ref|NP_297587.1| (NC_002488) hypothetical protein [Xylella fastidiosa 9a5c]
pir||B82823 hypothetical protein XF0294 [imported] - Xylella fastidiosa
(strain 9a5c)
gb|AAF83107.1|AE003883_2 (AE003883) hypothetical protein [Xylella fastidiosa 9a5c]
Length = 114
Score = 53.9 bits (128), Expect = 1e-06
Identities = 25/68 (36%), Positives = 41/68 (59%), Gaps = 1/68 (1%)
Query: 154 QSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLHLKTRHHNEYFRDLL 213
++ ++Q M R WGSC+ L + +L ++ +YV+VHELLHL+ H F+ L+
Sbjct: 27 RAVRVQDMHRKWGSCSSTGTITLAS-DLLDQEQRFQDYVIVHELLHLRFATHGRMFKALM 85
Query: 214 SLYLPNWQ 221
S Y+P W+
Sbjct: 86 SAYVPGWR 93
>ref|NP_142658.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||A71118 hypothetical protein PH0712 - Pyrococcus horikoshii
dbj|BAA29803.1| (AP000003) 230aa long hypothetical protein [Pyrococcus horikoshii]
Length = 230
Score = 53.9 bits (128), Expect = 1e-06
Identities = 50/215 (23%), Positives = 103/215 (47%), Gaps = 27/215 (12%)
Query: 15 IEKKDIKHLHISVCPPDGSVHVSCPLALNDESLRLSLIKRLHWIKEQQQNFLNQNRQSQR 74
+ +K +K++ + DG++ V P + E +R LIK+ +WI + + + + ++
Sbjct: 16 VVEKPVKYVTLRFLE-DGTLLVVTP---SKEIVREVLIKKRNWILSKL-SIIEEAKE--- 67
Query: 75 GMLERESHYLFGKRYLLKIEHTTKKHFVLQNPKYLILHVHQKTSLENRLKVLENYYRQVL 134
L E LFG+ Y L+I + F + + +I++ + VL ++ ++ +
Sbjct: 68 --LAGEGFPLFGRFYSLEIG----EKFEIDDKNRIIIYPG--------IDVLRDWIKKEV 113
Query: 135 REKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVV 194
+ + Q K + + ++ MK WGS K L NL +P + Y+V+
Sbjct: 114 KRRAQ----EISKEFGVAPKRIYVRVMKTKWGSTTWRKSVTL-NLSSVALPEELFHYLVI 168
Query: 195 HELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLKE 229
HEL HL +H++ F +++ Y P+++ + LK+
Sbjct: 169 HELAHLIELNHSKRFWSIVARYHPDYKEKRRELKK 203
>ref|NP_223460.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71894 hypothetical protein jhp0742 - Helicobacter pylori (strain J99)
gb|AAD06314.1| (AE001505) putative [Helicobacter pylori J99]
Length = 206
Score = 52.0 bits (123), Expect = 5e-06
Identities = 32/115 (27%), Positives = 60/115 (51%), Gaps = 15/115 (13%)
Query: 118 SLENRLKVLENYYRQ---VLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRA 174
+L + K+L+ Y Q ++ +K+QT S F I+ ++ GSC+ R
Sbjct: 90 TLTDLKKILKTYLEQKLPLIAQKMQT-----------SYTHFSIRNNAKVLGSCSYHNR- 137
Query: 175 LLFNLELAKVPRKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLKE 229
L F L L ++ I+YV++HEL H ++H++ F + ++ PN++ + LK+
Sbjct: 138 LSFALLLVCAKKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQ 192
>ref|NP_540932.1| (NC_003317) zinc metallopeptidases [Brucella melitensis]
gb|AAL53196.1| (AE009634) zinc metallopeptidases [Brucella melitensis]
Length = 253
Score = 51.6 bits (122), Expect = 7e-06
Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 18/181 (9%)
Query: 59 KEQQQNFLNQNRQSQRGMLERESHYLF---GKRYLLKIEHTTKKHFVLQNP--------K 107
+ + QNFLN++ G +E L G R +KI H ++ P +
Sbjct: 68 EREVQNFLNRHE----GWIESRIAKLPDQPGVRAGIKIPIRGVAHLIVHQPGRGTVECIE 123
Query: 108 YLILHVHQKTSLENRLKVLENYYRQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGS 167
IL VH S R + +Y ++ +R I+ + R+ + ++ + + K WGS
Sbjct: 124 GNILLVHGDPSHLPRR--VADYLKREVRRDIEALVVRHTAAVGRKAKAVRFKDTKSRWGS 181
Query: 168 CNIAKRALLFNLELAKVPRKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASL 227
C + L F+ + P I Y+V HE HL +H F L P+ +R KA L
Sbjct: 182 CT-SDGVLSFSWRIGMAPPPVINYLVAHEAAHLIEMNHGPKFWKLCQELCPDTERCKAWL 240
Query: 228 K 228
K
Sbjct: 241 K 241
>ref|NP_127009.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||B75043 hypothetical protein PAB1496 - Pyrococcus abyssi (strain Orsay)
emb|CAB50239.1| (AJ248287) hypothetical protein [Pyrococcus abyssi]
Length = 208
Score = 49.7 bits (117), Expect = 3e-05
Identities = 27/98 (27%), Positives = 52/98 (52%), Gaps = 1/98 (1%)
Query: 131 RQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIE 190
+++LR+++ + L + I+ MKR WGS + ++ +L A +PR +
Sbjct: 91 KRMLRKEVLNIAGEVGRALKVRPKRVYIKVMKRKWGSTTW-RGSITIDLSAAALPRDLLH 149
Query: 191 YVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLK 228
Y+V HE+ HL +H + F L+S + P+++ + LK
Sbjct: 150 YLVTHEMCHLIEMNHGKKFWSLVSRFHPDYKEKRRELK 187
>ref|NP_105795.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51581.1| (AP003005) hypothetical protein [Mesorhizobium loti]
Length = 252
Score = 48.5 bits (114), Expect = 6e-05
Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 126 LENYYRQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVP 185
+ ++ ++ +++I+ + ++ + L + ++ + + WGSC ++ L F+ + P
Sbjct: 139 IADFLKREAKKEIEKLVIKHTEALGKRAKAIRYKDTSSRWGSCT-SEGNLSFSWRIMMAP 197
Query: 186 RKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLK 228
+ I Y+V HE+ HLK +H F L P+ R K LK
Sbjct: 198 QPVINYLVAHEVAHLKEMNHGPKFWKLCEKLCPDTDRCKDWLK 240
>ref|NP_541426.1| (NC_003318) zinc metallopeptidases [Brucella melitensis]
gb|AAL53690.1| (AE009681) zinc metallopeptidases [Brucella melitensis]
Length = 246
Score = 48.5 bits (114), Expect = 6e-05
Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 14/198 (7%)
Query: 34 VHVSCPLALNDESLRLSLIKRLHWIKEQQQNFLNQNRQS-QRGMLERESHYLFGKRYLLK 92
V V P L+D+ + + K+ W+ +Q + Q + + E+ + G++Y LK
Sbjct: 38 VRVLAPSDLDDDRVLGIVRKKGAWLLRKQAAYRELEGQPVAKEFVSGETFHYLGRQYRLK 97
Query: 93 I--EHTTKKHFVLQNPKYLILHVH-------QKTSLENRLKVLENYYRQVLREKIQTCIN 143
+ + T + LI V Q+ ++ N L+ ++YR +
Sbjct: 98 LIPDETAVVTRIAARGSTLIAPVLPNGHASVQRAAVRNGLR---HWYRAHAIQHFPIRAR 154
Query: 144 RYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLHLKTR 203
K L K+ + WGSC+ A+ + N LA P ++YV+ HE H+
Sbjct: 155 VIAKTLGIPTPIVKVVDQSKRWGSCD-ARGRIRLNWRLAMAPMPLVDYVIAHEACHILEH 213
Query: 204 HHNEYFRDLLSLYLPNWQ 221
+H+ F L +P+++
Sbjct: 214 NHSRRFWRSLEAIMPDYE 231
>ref|NP_384132.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC41413.1| (AL591782) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 251
Score = 48.5 bits (114), Expect = 6e-05
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 120 ENRLKVLENYYRQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNL 179
E+ + + +Y ++ R +++ + Y +S ++ + WGSC+ A+ L F+
Sbjct: 132 EHLRRRIADYLKKEARSELERLVAVYAGRTGRRARSLSLKDTRSRWGSCS-AEGDLSFSW 190
Query: 180 ELAKVPRKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLK 228
+A P K I Y+ HE+ HL+ +H F L P + AK LK
Sbjct: 191 RIAMAPPKVIAYLAAHEVAHLQEMNHGPRFWALCESLCPETKDAKHWLK 239
>ref|NP_518642.1| (NC_003295) HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD14049.1| (AL646059) HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 288
Score = 48.1 bits (113), Expect = 8e-05
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 126 LENYYRQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVP 185
L+ R++ E++ Y + L ++ + WGSC A + N L P
Sbjct: 181 LQTQARRLFGERLDV----YAERLGVRHSAYALSSAATRWGSCT-ADGKIRLNWRLVHFP 235
Query: 186 RKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLK 228
I+YVV HEL HLK +H+ F D + P ++ A+ L+
Sbjct: 236 LSLIDYVVAHELAHLKEMNHSPRFWDTVESIFPEFREAREQLR 278
>ref|NP_275026.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||H81013 conserved hypothetical protein NMB2035 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF42356.1| (AE002553) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 230
Score = 45.4 bits (106), Expect = 5e-04
Identities = 34/141 (24%), Positives = 55/141 (38%), Gaps = 15/141 (10%)
Query: 102 VLQNPKYLILHVHQKTSL--------------ENRLKVLENYYRQVLREKIQTCINRYEK 147
+L + + L L HQ T + E +L +L ++ + + + R+ +
Sbjct: 81 ILFHGRQLALTAHQDTQILLMPSEIRVPEGAPEKQLALLRDFLERQAHSYLIPRLERHAR 140
Query: 148 ILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLHLKTRHHNE 207
S + K WG C + FN L P +YV +HEL HL H+
Sbjct: 141 TTQLFPASSSLTSAKTFWGVCR-KTTGIRFNWRLVGAPEYVADYVCIHELCHLAHPDHSP 199
Query: 208 YFRDLLSLYLPNWQRAKASLK 228
F +L + P +AK LK
Sbjct: 200 AFWELTRRFAPYTPKAKQWLK 220
>ref|NP_078157.1| (NC_002162) conserved hypothetical [Ureaplasma urealyticum]
pir||E82906 conserved hypothetical UU323 [imported] - Ureaplasma urealyticum
gb|AAF30732.1|AE002129_8 (AE002129) conserved hypothetical [Ureaplasma urealyticum]
Length = 231
Score = 45.4 bits (106), Expect = 5e-04
Identities = 35/136 (25%), Positives = 54/136 (38%), Gaps = 6/136 (4%)
Query: 90 LLKIEHTTKK------HFVLQNPKYLILHVHQKTSLENRLKVLENYYRQVLREKIQTCIN 143
LL I+ TT K H K +I Q +L N + + + I
Sbjct: 86 LLGIKFTTIKIKNNNFHCQFNFQKQIIYLYDQNQNLTNTKLLYQKILIYLAEIIFPQIIK 145
Query: 144 RYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLHLKTR 203
+ I +++ + K WG N K + + L + I YVV+HEL H+K +
Sbjct: 146 NAQNITTLTVKKYVFGFYKSQWGVYNKIKHTIGLSYFLVHYDQDIINYVVIHELAHIKYQ 205
Query: 204 HHNEYFRDLLSLYLPN 219
HH + F D + Y N
Sbjct: 206 HHQKSFWDFVLKYCKN 221
>ref|NP_661599.1| (NC_002932) zinc protease, putative [Chlorobium tepidum TLS]
gb|AAM71941.1| (AE012841) zinc protease, putative [Chlorobium tepidum TLS]
Length = 248
Score = 43.1 bits (100), Expect = 0.003
Identities = 22/94 (23%), Positives = 48/94 (50%), Gaps = 1/94 (1%)
Query: 126 LENYYRQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVP 185
LE + + + K+ + R I + ++K K WGSC+ ++ + NL+L +P
Sbjct: 133 LEQWLKHRAKLKLGAQLMRLASINGFKVSGVSVKKQKSRWGSCS-SRGNINLNLKLIFLP 191
Query: 186 RKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPN 219
+ Y+++HEL H +H+ + + ++ + P+
Sbjct: 192 PLLVRYIMIHELCHTLHMNHSARYWETVARFDPD 225
>ref|NP_629342.1| (NC_003888) hypothetical protein [Streptomyces coelicolor A3(2)]
emb|CAC01324.1| (AL390968) hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 168
Score = 42.7 bits (99), Expect = 0.003
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 165 WGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAK 224
WGSC ++ ++ + L +P ++YV++HEL HL H F LL Y P +RA+
Sbjct: 89 WGSCTPSEGSIRLSHRLQGMPEYVVDYVLLHELAHLLVPGHGPRFWRLLEAY-PRTERAR 147
Query: 225 ASLK 228
L+
Sbjct: 148 GYLE 151
>sp|O42287|ITN1_XENLA Intersectin 1
pir||T09194 adaptor protein intersectin - African clawed frog
gb|AAC73068.1| (AF032118) intersectin [Xenopus laevis]
Length = 1270
Score = 42.4 bits (98), Expect = 0.004
Identities = 37/177 (20%), Positives = 82/177 (45%), Gaps = 20/177 (11%)
Query: 53 KRLHWIKEQQQNFLNQNRQSQRGM----------------LERESHYLFGKRYLLKIEHT 96
++L W + ++Q LNQ + Q + L + H L GK ++ T
Sbjct: 443 RQLEWERNRRQELLNQRNREQEDIVVLKAKKKTLEFELEALNDKKHQLEGKLQDIRCRLT 502
Query: 97 TKKHFVLQNPKYLILHVHQKTSLENRLKVLENYYRQVLREKIQTCINRYEKILNESIQSF 156
T++H + K L + + T L+ +L+ + +++ EK Q+ I++ +++ S+
Sbjct: 503 TQRHEIESTNKSRELRIAEITHLQQQLQESQQLLGKMIPEK-QSLIDQLKQVQQNSLHRD 561
Query: 157 KIQKMKRIWGSCNIAKRALLFNL-ELAKVPRKGIEYVVV--HELLHLKTRHHNEYFR 210
+ +KR + I ++ L L E+ K R ++ + V ++L L+ ++ + F+
Sbjct: 562 SLLTLKRALETKEIGRQQLRDQLDEVEKETRAKLQEIDVFNNQLKELRELYNKQQFQ 618
>ref|NP_283232.1| (NC_003116) hypothetical protein NMA0403 [Neisseria meningitidis
Z2491]
pir||H81956 hypothetical protein NMA0403 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB83703.1| (AL162753) hypothetical protein NMA0403 [Neisseria meningitidis
Z2491]
Length = 230
Score = 42.0 bits (97), Expect = 0.006
Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 15/141 (10%)
Query: 102 VLQNPKYLILHVHQKTSL--------------ENRLKVLENYYRQVLREKIQTCINRYEK 147
+L + + L L HQ T + E +L +L ++ + + + R+ +
Sbjct: 81 ILFHGRQLALTAHQDTQILLMPSEIRVPEGAPEKQLALLRDFLERQAHSYLIPRLERHAR 140
Query: 148 ILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLHLKTRHHNE 207
+ K WG C + FN L P +YV +HEL HL H+
Sbjct: 141 TTQLFPAPSSLTSAKTFWGVCR-KTTGIRFNWRLVGAPEYVADYVCIHELCHLAHADHSR 199
Query: 208 YFRDLLSLYLPNWQRAKASLK 228
F L + P AK LK
Sbjct: 200 AFWALTRRFAPYTPEAKQWLK 220
>gb|AAD24686.1|AF083877_6 (AF083877) unknown [Erwinia amylovora]
Length = 90
Score = 42.0 bits (97), Expect = 0.006
Identities = 17/41 (41%), Positives = 26/41 (62%)
Query: 189 IEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLKE 229
I+YV++HEL HL +H+E F L++ +P W+ K L E
Sbjct: 40 IDYVILHELCHLAEHNHSERFYRLMAQVMPQWRTIKVRLDE 80
>ref|NP_273283.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||D81223 conserved hypothetical protein NMB0226 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40682.1| (AE002380) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 230
Score = 42.0 bits (97), Expect = 0.006
Identities = 28/137 (20%), Positives = 59/137 (42%), Gaps = 5/137 (3%)
Query: 92 KIEHTTKKHFVLQNPKYLILHVHQKTSLENRLKVLENYYRQVLREKIQTCINRYEKILNE 151
K++ ++ H + + + L+ +++ ++L R+ L +++ ++
Sbjct: 89 KLDTHSQSHIRITSSEILLPRKETAAQIDHLRRLLNERAREYLLPRLE----KHAAETGL 144
Query: 152 SIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLHLKTRHHNEYFRD 211
+ + + K WG C + N L P +YV +HEL HL+ H+ F
Sbjct: 145 TPTATDLSNAKTFWGVCR-PHTGIRLNWRLIGTPEYVADYVCIHELCHLRHPDHSPRFWH 203
Query: 212 LLSLYLPNWQRAKASLK 228
L++ P+ AK+ LK
Sbjct: 204 LVNTLTPHTDNAKSWLK 220
>ref|NP_282887.1| (NC_003116) hypothetical protein NMA0032 [Neisseria meningitidis
Z2491]
pir||C81994 hypothetical protein NMA0032 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB72040.1| (AJ391262) hypothetical protein [Neisseria meningitidis]
emb|CAB83351.1| (AL162752) hypothetical protein NMA0032 [Neisseria meningitidis
Z2491]
Length = 230
Score = 42.0 bits (97), Expect = 0.006
Identities = 28/137 (20%), Positives = 59/137 (42%), Gaps = 5/137 (3%)
Query: 92 KIEHTTKKHFVLQNPKYLILHVHQKTSLENRLKVLENYYRQVLREKIQTCINRYEKILNE 151
K++ ++ H + + + L+ +++ ++L R+ L +++ ++
Sbjct: 89 KLDTHSQSHIRITSSEILLPRKETAAQIDHLRRLLNERAREYLLPRLE----KHAAETGL 144
Query: 152 SIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLHLKTRHHNEYFRD 211
+ + + K WG C + N L P +YV +HEL HL+ H+ F
Sbjct: 145 TPAATDLSNAKTFWGVCR-PHTGIRLNWRLIGTPEYVADYVCIHELCHLRHPDHSPRFWH 203
Query: 212 LLSLYLPNWQRAKASLK 228
L++ P+ AK+ LK
Sbjct: 204 LVNTLTPHTDNAKSWLK 220
>gb|AAD38302.1|AF036242_2 (AF036242) unknown [Neisseria meningitidis]
Length = 230
Score = 41.2 bits (95), Expect = 0.010
Identities = 32/141 (22%), Positives = 53/141 (36%), Gaps = 15/141 (10%)
Query: 102 VLQNPKYLILHVHQKTSL--------------ENRLKVLENYYRQVLREKIQTCINRYEK 147
+L + + L L HQ T + E +L +L ++ + + + R+ +
Sbjct: 81 ILFHGRQLALTAHQDTQILLMPSEIRVPEGAPEKQLALLRDFLERQAHSYLIPRLERHAR 140
Query: 148 ILNESIQSFKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLHLKTRHHNE 207
+ K WG C + N L P +YV +HEL HL H+
Sbjct: 141 TTQLFPAPSSLTSAKTFWGVCR-KTTGIRLNWRLVGAPEYVADYVCIHELCHLAHPDHSP 199
Query: 208 YFRDLLSLYLPNWQRAKASLK 228
F +L + P +AK LK
Sbjct: 200 AFWELTRRFAPYTPKAKQWLK 220
>ref|NP_353056.1| (NC_003062) AGR_C_25p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_530731.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK85841.1| (AE007944) AGR_C_25p [Agrobacterium tumefaciens str. C58 (Cereon)]
gb|AAL41047.1| (AE008976) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 255
Score = 41.2 bits (95), Expect = 0.010
Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 120 ENRLKVLENYYRQVLREKIQTCINRYEKILNESIQSFKIQKMKRIWGSCNIAKRALLFNL 179
E+ + + + ++ + ++ + + + ++S ++ + WGSC+ L F+
Sbjct: 136 EHLRRRIATFLKKEAKADLERLVAIHGRAAGRPVRSISMKDTRSRWGSCSHDGN-LSFSW 194
Query: 180 ELAKVPRKGIEYVVVHELLHLKTRHHNEYFRDLLSLYLPNWQRAKASLK 228
+ P + I+Y+ HE+ HL +H F L P+ AK LK
Sbjct: 195 RIVMAPDRVIDYLAAHEVAHLSEMNHGPKFWALCEKLCPHTSEAKDWLK 243
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,009,287
Number of Sequences: 1026957
Number of extensions: 5465778
Number of successful extensions: 14713
Number of sequences better than 1.0e-02: 42
Number of HSP's better than 0.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 14669
Number of HSP's gapped (non-prelim): 43
length of query: 235
length of database: 324,149,939
effective HSP length: 117
effective length of query: 118
effective length of database: 203,995,970
effective search space: 24071524460
effective search space used: 24071524460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 95 (41.2 bits)