BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646020|ref|NP_208201.1| hypothetical protein
[Helicobacter pylori 26695]
(394 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208201.1| (NC_000915) hypothetical protein [Helicoba... 796 0.0
ref|NP_207223.1| (NC_000915) hypothetical protein [Helicoba... 780 0.0
ref|NP_224021.1| (NC_000921) putative [Helicobacter pylori ... 721 0.0
ref|NP_603278.1| (NC_003454) Single-stranded-DNA-specific e... 45 0.002
ref|NP_465050.1| (NC_003210) similar to single-stranded-DNA... 43 0.006
>ref|NP_208201.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64696 hypothetical protein HP1410 - Helicobacter pylori (strain 26695)
gb|AAD08455.1| (AE000641) H. pylori predicted coding region HP1410 [Helicobacter
pylori 26695]
Length = 394
Score = 796 bits (2056), Expect = 0.0
Identities = 394/394 (100%), Positives = 394/394 (100%)
Query: 1 MPKKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF 60
MPKKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF
Sbjct: 1 MPKKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF 60
Query: 61 SPLRNAHGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAA 120
SPLRNAHGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAA
Sbjct: 61 SPLRNAHGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAA 120
Query: 121 NTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQ 180
NTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQ
Sbjct: 121 NTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQ 180
Query: 181 IFQTQTTPLEEELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDD 240
IFQTQTTPLEEELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDD
Sbjct: 181 IFQTQTTPLEEELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDD 240
Query: 241 LDEISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINXPRLSVFNVKEF 300
LDEISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPIN PRLSVFNVKEF
Sbjct: 241 LDEISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINXPRLSVFNVKEF 300
Query: 301 KXYNDXKKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLC 360
K YND KKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLC
Sbjct: 301 KXYNDXKKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLC 360
Query: 361 IYRDNKDGYSGSARGGGNFLSQIKTIPFNTSWRA 394
IYRDNKDGYSGSARGGGNFLSQIKTIPFNTSWRA
Sbjct: 361 IYRDNKDGYSGSARGGGNFLSQIKTIPFNTSWRA 394
>ref|NP_207223.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64573 hypothetical protein HP0425 - Helicobacter pylori (strain 26695)
gb|AAD07494.1| (AE000558) H. pylori predicted coding region HP0425 [Helicobacter
pylori 26695]
Length = 417
Score = 780 bits (2015), Expect = 0.0
Identities = 384/387 (99%), Positives = 384/387 (99%)
Query: 1 MPKKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF 60
MPKKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF
Sbjct: 1 MPKKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF 60
Query: 61 SPLRNAHGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAA 120
SPLRNAHGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAA
Sbjct: 61 SPLRNAHGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAA 120
Query: 121 NTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQ 180
NTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQ
Sbjct: 121 NTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQ 180
Query: 181 IFQTQTTPLEEELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDD 240
IFQTQTTPLEEELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDD
Sbjct: 181 IFQTQTTPLEEELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDD 240
Query: 241 LDEISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINXPRLSVFNVKEF 300
LDEISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPIN PRLSVFNVKEF
Sbjct: 241 LDEISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINDPRLSVFNVKEF 300
Query: 301 KXYNDXKKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLC 360
K YND KKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLC
Sbjct: 301 KRYNDIKKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLC 360
Query: 361 IYRDNKDGYSGSARGGGNFLSQIKTIP 387
IYRDNKDGYSGSARGGGNFLSQIKTIP
Sbjct: 361 IYRDNKDGYSGSARGGGNFLSQIKTIP 387
>ref|NP_224021.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71824 hypothetical protein jhp1303 - Helicobacter pylori (strain J99)
gb|AAD06881.1| (AE001553) putative [Helicobacter pylori J99]
Length = 410
Score = 721 bits (1860), Expect = 0.0
Identities = 354/387 (91%), Positives = 369/387 (94%)
Query: 1 MPKKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF 60
MPKKELLKMSKKRIFKDFL+E K+HRPI+FYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF
Sbjct: 1 MPKKELLKMSKKRIFKDFLEEVKRHRPIIFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF 60
Query: 61 SPLRNAHGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAA 120
SPLRNAHGYGFTDLALNDLLSQ CIFNPKTNQLVRLD IKNQFQK PLLFSADLGADL +
Sbjct: 61 SPLRNAHGYGFTDLALNDLLSQLCIFNPKTNQLVRLDYIKNQFQKTPLLFSADLGADLVS 120
Query: 121 NTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQ 180
N ELQ+ILLE FEQCIITDHHKSFEVDWID+NKIAYINLNDEKDANYYSGAFTSALVFSQ
Sbjct: 121 NIELQKILLERFEQCIITDHHKSFEVDWIDKNKIAYINLNDEKDANYYSGAFTSALVFSQ 180
Query: 181 IFQTQTTPLEEELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDD 240
IFQ QTTPLEEELIAITLLSDRIDLD+GDNLDMVL+LAQ KH+RI+CFFKDKDLSLAQDD
Sbjct: 181 IFQIQTTPLEEELIAITLLSDRIDLDNGDNLDMVLNLAQPKHDRIECFFKDKDLSLAQDD 240
Query: 241 LDEISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINXPRLSVFNVKEF 300
LDEISNLYGFNCINYINALSRLSGAREFKGCY+SYLHYLVLKHFNPI+ PRLSVFNVKEF
Sbjct: 241 LDEISNLYGFNCINYINALSRLSGAREFKGCYNSYLHYLVLKHFNPISDPRLSVFNVKEF 300
Query: 301 KXYNDXKKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLC 360
K YND KKKMVKESEENAQIF CNKILVA+LDESCS KVGVSGLVANNFLKKYP N SLC
Sbjct: 301 KRYNDIKKKMVKESEENAQIFSCNKILVAILDESCSIKVGVSGLVANNFLKKYPFNHSLC 360
Query: 361 IYRDNKDGYSGSARGGGNFLSQIKTIP 387
IY+D+KDGYSGSARG G FLSQIKTIP
Sbjct: 361 IYKDSKDGYSGSARGDGTFLSQIKTIP 387
>ref|NP_603278.1| (NC_003454) Single-stranded-DNA-specific exonuclease recJ
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gb|AAL94577.1| (AE010548) Single-stranded-DNA-specific exonuclease recJ
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 844
Score = 44.7 bits (104), Expect = 0.002
Identities = 90/390 (23%), Positives = 159/390 (40%), Gaps = 71/390 (18%)
Query: 7 LKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNA 66
+ ++ +RIF+ K ++ I Y D D DG+ + S+L LG + ++ PLR+
Sbjct: 56 MDIATQRIFEAI----KNNQKIYIYGDYDVDGITSVSLLYLAFSELG-ANVNYYIPLRD- 109
Query: 67 HGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAANTELQE 126
GYG A+ L N + ++ +DC N ++ + F+ +L D
Sbjct: 110 EGYGLNKEAIQILK------NENADLVISVDCGINSIEE--INFANELNLDF-------- 153
Query: 127 ILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDA---NYYSGAFTSALVFSQIFQ 183
IITDHH E+ +A IN E++ Y +G T+ ++ ++
Sbjct: 154 ---------IITDHH---EITGGIPKALAVINPKREENIYSFKYLAGVGTAFMLIYALY- 200
Query: 184 TQTTPLEE-----ELIAITLLSDRIDLDHGDNLDMVL----SLAQAKHERIKCFFKDKDL 234
TQ L + +++AI ++D + L DN V +L K IK + K
Sbjct: 201 TQMNKLNDLEKYLDIVAIGTVADIVPL-VSDNRKFVKKGLETLKNTKWIGIKQLLR-KIF 258
Query: 235 SLAQDDLDEISNLYGFNCINYINALSRLSGAREFKGCY---DSYLHYLVLKHFNPINXPR 291
D + + G+ NA RL A++ + D + ++ N R
Sbjct: 259 PDNWDTKEYFAYDIGYIIAPIFNAAGRLEDAKQAVSLFVEEDGFKCLSIIDKLLENNTER 318
Query: 292 LSVFNVKEFKXYNDXKKKMVKES---EENAQIFPCNKILVALLDESCSTKVGVSGLVANN 348
D +KK+++ S E Q++ N ILVA + + GV G+VA+
Sbjct: 319 ------------KDIQKKILEMSIAEIEKKQLYNKNLILVA----NKAFHHGVIGIVASK 362
Query: 349 FLKKYPSNRSLCIYRDNKDGYSGSARGGGN 378
L KY + ++++ + S R G+
Sbjct: 363 ILDKYYKPTIIMEIKESEGVATASCRSIGD 392
>ref|NP_465050.1| (NC_003210) similar to single-stranded-DNA-specific exonuclease
(RecJ) [Listeria monocytogenes EGD-e]
emb|CAC99603.1| (AL591979) similar to single-stranded-DNA-specific exonuclease
(RecJ) [Listeria monocytogenes]
Length = 783
Score = 43.1 bits (100), Expect = 0.006
Identities = 86/366 (23%), Positives = 144/366 (38%), Gaps = 56/366 (15%)
Query: 19 LKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLALN 77
+K+A +++ I+ Y D D DG+ + +VLM LG D F+ P R GYG
Sbjct: 73 IKQAIERNEQILVYGDYDADGVTSIAVLMKTLRHLG-ADADFYIPNRFTEGYG------- 124
Query: 78 DLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLG-ADLAANTELQEILLEHFEQCI 136
+ D KN Q L+ + D G A L +EI L+ I
Sbjct: 125 -------------PNIAAFDMAKN--QGTDLIITVDNGIAALEVMAHAKEIGLD----VI 165
Query: 137 ITDHHKSFEVDWIDENKIAYINLNDEKDANYYS--GAFTSALVFSQIFQTQTTPLEEELI 194
+TDHH+ E I +A I+ K A + A S + +L+
Sbjct: 166 VTDHHEPRE---IMPEAVAVIHPKHPKSAYPFDELAGVGVAYKLSHALLGEEPKELLDLV 222
Query: 195 AITLLSDRIDLDHGDNLDMVLSLAQAKHE-RIKCFFKDKDLSLAQDDLDEISNLYGFNCI 253
A+ ++D + L + L + L L Q + + K SL ++ E GF
Sbjct: 223 AVGTVADLVSLTDENRLLVQLGLRQLRESANLGLAVLAKKASLKLEEATE--ETIGFGLA 280
Query: 254 NYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINXPRLSVFNVKEFKXYNDXKKKMVKE 313
+NA+ RL A D L+ + P ++F +E N +K++V +
Sbjct: 281 PRLNAVGRLGPA-------DPAADLLLTE------DPEEALFLAEEIDDANKERKQIVVD 327
Query: 314 SEENAQ--IFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLCIYRDNKDGYSG 371
+ + A I + + L+ G+ G+VA+ + Y S ++ + D +G
Sbjct: 328 TTKLAMEAIEAKDTLGNVLVVYGEGWNTGILGIVASKLVGTY-SRPAIVL---GIDPVTG 383
Query: 372 SARGGG 377
A+G G
Sbjct: 384 IAKGSG 389
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.139 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,788,880
Number of Sequences: 1026957
Number of extensions: 10650790
Number of successful extensions: 21294
Number of sequences better than 1.0e-02: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21290
Number of HSP's gapped (non-prelim): 5
length of query: 394
length of database: 324,149,939
effective HSP length: 123
effective length of query: 271
effective length of database: 197,834,228
effective search space: 53613075788
effective search space used: 53613075788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 98 (42.4 bits)