BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646022|ref|NP_208203.1| hypothetical protein
[Helicobacter pylori 26695]
(308 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207221.1| (NC_000915) hypothetical protein [Helicoba... 622 e-177
pir||D64696 hypothetical protein HP0423/HP1412 - Helicobact... 621 e-177
ref|NP_224025.1| (NC_000921) putative [Helicobacter pylori ... 202 5e-51
ref|NP_223676.1| (NC_000921) putative [Helicobacter pylori ... 189 4e-47
ref|NP_223675.1| (NC_000921) putative [Helicobacter pylori ... 80 3e-14
>ref|NP_207221.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
ref|NP_208203.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
gb|AAD07492.1| (AE000558) H. pylori predicted coding region HP0423 [Helicobacter
pylori 26695]
gb|AAD08454.1| (AE000641) H. pylori predicted coding region HP1412 [Helicobacter
pylori 26695]
Length = 308
Score = 622 bits (1603), Expect = e-177
Identities = 308/308 (100%), Positives = 308/308 (100%)
Query: 1 MGFQNENKLKVGALVKATINNKVVEAKVIGVGFNRVTLRSEKGNEATYAFNSDKFLKWFK 60
MGFQNENKLKVGALVKATINNKVVEAKVIGVGFNRVTLRSEKGNEATYAFNSDKFLKWFK
Sbjct: 1 MGFQNENKLKVGALVKATINNKVVEAKVIGVGFNRVTLRSEKGNEATYAFNSDKFLKWFK 60
Query: 61 EVPLNEVATNHVEKSGDDLLKNVKIVTSGQSVKDRASTPKEKEDRFKLAFGFKTTDDKTS 120
EVPLNEVATNHVEKSGDDLLKNVKIVTSGQSVKDRASTPKEKEDRFKLAFGFKTTDDKTS
Sbjct: 61 EVPLNEVATNHVEKSGDDLLKNVKIVTSGQSVKDRASTPKEKEDRFKLAFGFKTTDDKTS 120
Query: 121 FEIIAEDYTLSERKSRLGALLSPMFFEGSGNQATAIILTALHYAKGLNKHSDAEWRAMID 180
FEIIAEDYTLSERKSRLGALLSPMFFEGSGNQATAIILTALHYAKGLNKHSDAEWRAMID
Sbjct: 121 FEIIAEDYTLSERKSRLGALLSPMFFEGSGNQATAIILTALHYAKGLNKHSDAEWRAMID 180
Query: 181 SRDEEKCEITTLDNLDRVGTTLFCGVIKEYAEGNKEFEKELNDFSPDGFWAKYLPKNKNE 240
SRDEEKCEITTLDNLDRVGTTLFCGVIKEYAEGNKEFEKELNDFSPDGFWAKYLPKNKNE
Sbjct: 181 SRDEEKCEITTLDNLDRVGTTLFCGVIKEYAEGNKEFEKELNDFSPDGFWAKYLPKNKNE 240
Query: 241 AMFVAQLICDGGINKYGLSCAGLTPGVLADNLWSYGMRDEDYDEEGNVIRERDIVTGEEL 300
AMFVAQLICDGGINKYGLSCAGLTPGVLADNLWSYGMRDEDYDEEGNVIRERDIVTGEEL
Sbjct: 241 AMFVAQLICDGGINKYGLSCAGLTPGVLADNLWSYGMRDEDYDEEGNVIRERDIVTGEEL 300
Query: 301 NNAEGNVE 308
NNAEGNVE
Sbjct: 301 NNAEGNVE 308
>pir||D64696 hypothetical protein HP0423/HP1412 - Helicobacter pylori (strain
26695)
Length = 308
Score = 621 bits (1601), Expect = e-177
Identities = 307/308 (99%), Positives = 308/308 (99%)
Query: 1 MGFQNENKLKVGALVKATINNKVVEAKVIGVGFNRVTLRSEKGNEATYAFNSDKFLKWFK 60
MGFQNENKLKVGALVKATINNKVVEAKVIGVGFNRVT+RSEKGNEATYAFNSDKFLKWFK
Sbjct: 1 MGFQNENKLKVGALVKATINNKVVEAKVIGVGFNRVTMRSEKGNEATYAFNSDKFLKWFK 60
Query: 61 EVPLNEVATNHVEKSGDDLLKNVKIVTSGQSVKDRASTPKEKEDRFKLAFGFKTTDDKTS 120
EVPLNEVATNHVEKSGDDLLKNVKIVTSGQSVKDRASTPKEKEDRFKLAFGFKTTDDKTS
Sbjct: 61 EVPLNEVATNHVEKSGDDLLKNVKIVTSGQSVKDRASTPKEKEDRFKLAFGFKTTDDKTS 120
Query: 121 FEIIAEDYTLSERKSRLGALLSPMFFEGSGNQATAIILTALHYAKGLNKHSDAEWRAMID 180
FEIIAEDYTLSERKSRLGALLSPMFFEGSGNQATAIILTALHYAKGLNKHSDAEWRAMID
Sbjct: 121 FEIIAEDYTLSERKSRLGALLSPMFFEGSGNQATAIILTALHYAKGLNKHSDAEWRAMID 180
Query: 181 SRDEEKCEITTLDNLDRVGTTLFCGVIKEYAEGNKEFEKELNDFSPDGFWAKYLPKNKNE 240
SRDEEKCEITTLDNLDRVGTTLFCGVIKEYAEGNKEFEKELNDFSPDGFWAKYLPKNKNE
Sbjct: 181 SRDEEKCEITTLDNLDRVGTTLFCGVIKEYAEGNKEFEKELNDFSPDGFWAKYLPKNKNE 240
Query: 241 AMFVAQLICDGGINKYGLSCAGLTPGVLADNLWSYGMRDEDYDEEGNVIRERDIVTGEEL 300
AMFVAQLICDGGINKYGLSCAGLTPGVLADNLWSYGMRDEDYDEEGNVIRERDIVTGEEL
Sbjct: 241 AMFVAQLICDGGINKYGLSCAGLTPGVLADNLWSYGMRDEDYDEEGNVIRERDIVTGEEL 300
Query: 301 NNAEGNVE 308
NNAEGNVE
Sbjct: 301 NNAEGNVE 308
>ref|NP_224025.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71822 hypothetical protein jhp1307 - Helicobacter pylori (strain J99)
gb|AAD06893.1| (AE001554) putative [Helicobacter pylori J99]
Length = 240
Score = 202 bits (513), Expect = 5e-51
Identities = 109/217 (50%), Positives = 143/217 (65%), Gaps = 12/217 (5%)
Query: 73 EKSGDDLLKNVKIVTSGQSVKDRASTPKE---KEDRFKLAFGFKTTDDKTSFEIIAEDYT 129
EKSG+DLLK+VK+VTSG SVKDR STPKE KEDRFKL F F D KT+F IAE
Sbjct: 12 EKSGEDLLKDVKVVTSGPSVKDRTSTPKEPKEKEDRFKLMFDFG--DVKTNFMAIAEGSV 69
Query: 130 LSERKSRLGALLSPMFFEGSGNQATAIILTALHYAKGLNKHSDAEWRAMIDSRDEEKCEI 189
LSERK RLG L+SP+ + G+G A+ +I+ AL +A L H+D EW M+++R+ ++C
Sbjct: 70 LSERKGRLGQLMSPLVYRGNGFHASLVIMWALSFASQLKHHNDHEWAKMLENRNVDECWF 129
Query: 190 TTLDNLDRVGTTLFCGVIKEYAEGNKEFEKELNDFSPDGFWAKYLPKNKNEAMFVAQLIC 249
T D++D LFC ++ YA+G +E + WA LPKN+ EA FVAQL+C
Sbjct: 130 ETFDHMDNTDLRLFCDILGAYAQGQEE------TLNLTKLWAVMLPKNQKEAYFVAQLLC 183
Query: 250 DGGINKYGLSCAGLTPGVLADNLWSYGMR-DEDYDEE 285
DGGIN+Y LSCAGLT +L D + G+ D +Y +E
Sbjct: 184 DGGINRYNLSCAGLTENLLKDVIPHIGLETDNEYLKE 220
>ref|NP_223676.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71866 hypothetical protein jhp0959 - Helicobacter pylori (strain J99)
gb|AAD06532.1| (AE001525) putative [Helicobacter pylori J99]
Length = 218
Score = 189 bits (479), Expect = 4e-47
Identities = 103/210 (49%), Positives = 136/210 (64%), Gaps = 12/210 (5%)
Query: 79 LLKNVKIVTSGQSVKDRASTPKE---KEDRFKLAFGFKTTDDKTSFEIIAEDYTLSERKS 135
+LK+VK+VTSG SVKDR STPKE KEDRFKL F F D KT+F IAE LSERK
Sbjct: 1 MLKDVKVVTSGPSVKDRTSTPKEPKEKEDRFKLMFDFG--DVKTNFMAIAEGSVLSERKG 58
Query: 136 RLGALLSPMFFEGSGNQATAIILTALHYAKGLNKHSDAEWRAMIDSRDEEKCEITTLDNL 195
RLG L+SP+ + G+G A+ +I+ AL +A L H+D EW M+++R+ ++C T D++
Sbjct: 59 RLGQLMSPLVYRGNGFHASLVIMWALSFASQLKHHNDHEWAKMLENRNVDECWFETFDHM 118
Query: 196 DRVGTTLFCGVIKEYAEGNKEFEKELNDFSPDGFWAKYLPKNKNEAMFVAQLICDGGINK 255
D LFC ++ YA+G +E + WA LPKN+ EA FVAQL+CDGGIN+
Sbjct: 119 DNTDLRLFCDILGAYAQGQEE------TLNLTKLWAVMLPKNQKEAYFVAQLLCDGGINR 172
Query: 256 YGLSCAGLTPGVLADNLWSYGM-RDEDYDE 284
Y LSCAGLT +L D + G+ E+ DE
Sbjct: 173 YNLSCAGLTENLLKDIEVNLGLATHEEVDE 202
>ref|NP_223675.1| (NC_000921) putative [Helicobacter pylori J99]
ref|NP_224024.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71822 hypothetical protein (jhp1306, jhp0958) - Helicobacter pylori
gb|AAD06538.1| (AE001525) putative [Helicobacter pylori J99]
gb|AAD06883.1| (AE001554) putative [Helicobacter pylori J99]
Length = 51
Score = 80.1 bits (196), Expect = 3e-14
Identities = 40/50 (80%), Positives = 43/50 (86%)
Query: 1 MGFQNENKLKVGALVKATINNKVVEAKVIGVGFNRVTLRSEKGNEATYAF 50
MGFQNENKLKVGA VKATIN+KVVEAKVI +GFNRVTLRSEKG + F
Sbjct: 1 MGFQNENKLKVGASVKATINDKVVEAKVISIGFNRVTLRSEKGQRSHLRF 50
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.314 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,238,822
Number of Sequences: 1026957
Number of extensions: 8805087
Number of successful extensions: 15286
Number of sequences better than 1.0e-02: 5
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15275
Number of HSP's gapped (non-prelim): 6
length of query: 308
length of database: 324,149,939
effective HSP length: 121
effective length of query: 187
effective length of database: 199,888,142
effective search space: 37379082554
effective search space used: 37379082554
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 97 (42.0 bits)