BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644647|ref|NP_206816.1| hypothetical protein
[Helicobacter pylori 26695]
         (275 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_206816.1|  (NC_000915) hypothetical protein [Helicoba...   568  e-161
ref|NP_222734.1|  (NC_000921) putative [Helicobacter pylori ...   554  e-157
ref|NP_245234.1|  (NC_002663) unknown [Pasteurella multocida...   195  4e-49

>ref|NP_206816.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64521 hypothetical protein HP0014 - Helicobacter pylori (strain 26695)
 gb|AAD07090.1| (AE000524) H. pylori predicted coding region HP0014 [Helicobacter
           pylori 26695]
          Length = 275

 Score =  568 bits (1465), Expect = e-161
 Identities = 275/275 (100%), Positives = 275/275 (100%)

Query: 1   MQEFLGFGVVGNFAGHLEQAGESHSFINMKSEEKDAPKGLFPFYIPYENCYLGRCCIDNH 60
           MQEFLGFGVVGNFAGHLEQAGESHSFINMKSEEKDAPKGLFPFYIPYENCYLGRCCIDNH
Sbjct: 1   MQEFLGFGVVGNFAGHLEQAGESHSFINMKSEEKDAPKGLFPFYIPYENCYLGRCCIDNH 60

Query: 61  KIILPSDLDLRVQAEPEIALECDVKYDEKHLVAKLVPNFFMAFNDASVRNLDAAKLSQKK 120
           KIILPSDLDLRVQAEPEIALECDVKYDEKHLVAKLVPNFFMAFNDASVRNLDAAKLSQKK
Sbjct: 61  KIILPSDLDLRVQAEPEIALECDVKYDEKHLVAKLVPNFFMAFNDASVRNLDAAKLSQKK 120

Query: 121 NFSPASKGIGQKLPIDRFVYGGVCNNFSIASFLKYNNVWHIYGENSKLLKYEFFYQKLLD 180
           NFSPASKGIGQKLPIDRFVYGGVCNNFSIASFLKYNNVWHIYGENSKLLKYEFFYQKLLD
Sbjct: 121 NFSPASKGIGQKLPIDRFVYGGVCNNFSIASFLKYNNVWHIYGENSKLLKYEFFYQKLLD 180

Query: 181 WIKDQLNHQQDGDSLEALRPFLERHNFPTKMIFAIGATPYMPFAQEHFLQKGDEVVIVAY 240
           WIKDQLNHQQDGDSLEALRPFLERHNFPTKMIFAIGATPYMPFAQEHFLQKGDEVVIVAY
Sbjct: 181 WIKDQLNHQQDGDSLEALRPFLERHNFPTKMIFAIGATPYMPFAQEHFLQKGDEVVIVAY 240

Query: 241 NHLQYSFEKIQNLLEEDALQAKEHANLSYVYQIVE 275
           NHLQYSFEKIQNLLEEDALQAKEHANLSYVYQIVE
Sbjct: 241 NHLQYSFEKIQNLLEEDALQAKEHANLSYVYQIVE 275



>ref|NP_222734.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71984 hypothetical protein jhp0012 - Helicobacter pylori (strain J99)
 gb|AAD05594.1| (AE001441) putative [Helicobacter pylori J99]
          Length = 275

 Score =  554 bits (1427), Expect = e-157
 Identities = 267/275 (97%), Positives = 271/275 (98%)

Query: 1   MQEFLGFGVVGNFAGHLEQAGESHSFINMKSEEKDAPKGLFPFYIPYENCYLGRCCIDNH 60
           MQEFLGFGVVGNFAGHLEQAGESHSFINMKSEEKDAPKGLFPFYIPYENCYLGRCCI+NH
Sbjct: 1   MQEFLGFGVVGNFAGHLEQAGESHSFINMKSEEKDAPKGLFPFYIPYENCYLGRCCINNH 60

Query: 61  KIILPSDLDLRVQAEPEIALECDVKYDEKHLVAKLVPNFFMAFNDASVRNLDAAKLSQKK 120
           KIILPSD DLRVQAEPEIALECDVKYDEKHLV KLVPNFFMAFNDASVRNL+A KLSQKK
Sbjct: 61  KIILPSDPDLRVQAEPEIALECDVKYDEKHLVTKLVPNFFMAFNDASVRNLEATKLSQKK 120

Query: 121 NFSPASKGIGQKLPIDRFVYGGVCNNFSIASFLKYNNVWHIYGENSKLLKYEFFYQKLLD 180
           NFSPASKGIGQKLPIDRFVYGGVCNNFSIASFLKY+NVWHIYGENSKLLKYEFFYQKLLD
Sbjct: 121 NFSPASKGIGQKLPIDRFVYGGVCNNFSIASFLKYDNVWHIYGENSKLLKYEFFYQKLLD 180

Query: 181 WIKDQLNHQQDGDSLEALRPFLERHNFPTKMIFAIGATPYMPFAQEHFLQKGDEVVIVAY 240
           WIK+QLNHQQDGDSLEALRPFLERHNFPTKMIFAIGATPYMPFAQEHFLQKGDEVVIVAY
Sbjct: 181 WIKNQLNHQQDGDSLEALRPFLERHNFPTKMIFAIGATPYMPFAQEHFLQKGDEVVIVAY 240

Query: 241 NHLQYSFEKIQNLLEEDALQAKEHANLSYVYQIVE 275
           NHLQYSFEKIQNLLEEDALQ KEHANLSYVYQIVE
Sbjct: 241 NHLQYSFEKIQNLLEEDALQTKEHANLSYVYQIVE 275



>ref|NP_245234.1| (NC_002663) unknown [Pasteurella multocida]
 gb|AAK02381.1| (AE006065) unknown [Pasteurella multocida]
          Length = 294

 Score =  195 bits (496), Expect = 4e-49
 Identities = 103/258 (39%), Positives = 156/258 (59%), Gaps = 8/258 (3%)

Query: 7   FGVVGNFAGHLEQAGESHSFINMKSEEKDAPKGLFPFYIPYENC-----YLGRCCIDNHK 61
           FGV GNFAGHLEQAGE+  FI++++EE+  PK +FPFY+P E       +L    + + +
Sbjct: 24  FGVAGNFAGHLEQAGEAADFISVQTEEEIQPKAIFPFYVPSETLNPEHQFLATFPLTHDQ 83

Query: 62  IILPSDLDL-RVQAEPEIALECDVKYDEKHLVAKLVPNFFMAFNDASVRNLDAAKLSQKK 120
           I  P       +Q EPEIAL CD++Y EK +++ L P FF A+ND S+R  DA K+S+KK
Sbjct: 84  ICFPKQKGADNLQIEPEIALICDIEYQEKQVIS-LTPRFFTAYNDCSIRRPDAKKISEKK 142

Query: 121 NFSPASKGIGQKL-PIDRFVYGGVCNNFSIASFLKYNNVWHIYGENSKLLKYEFFYQKLL 179
           N+   +KG+   L P+  F  G   +++ IA F K    ++ YG +S  L Y +F+QKLL
Sbjct: 143 NWGEKTKGLANTLLPLSSFAPGCELDHYHIACFHKRGTDFNEYGIDSPALGYSYFHQKLL 202

Query: 180 DWIKDQLNHQQDGDSLEALRPFLERHNFPTKMIFAIGATPYMPFAQEHFLQKGDEVVIVA 239
           +WI  ++N Q D   +  +   L + N+P + +  IGAT Y  F + +FLQ GD  ++V 
Sbjct: 203 NWIITKMNTQPDQGPMNDIPALLAKANYPKQAVIGIGATRYTAFGERNFLQIGDTSIVVV 262

Query: 240 YNHLQYSFEKIQNLLEED 257
           YN  +Y  E I ++ +++
Sbjct: 263 YNAKKYDHETIVSMAKQN 280



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.322    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,996,390
Number of Sequences: 1026957
Number of extensions: 7790827
Number of successful extensions: 17127
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17121
Number of HSP's gapped (non-prelim): 3
length of query: 275
length of database: 324,149,939
effective HSP length: 119
effective length of query: 156
effective length of database: 201,942,056
effective search space: 31502960736
effective search space used: 31502960736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 96 (41.6 bits)