BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646023|ref|NP_208204.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(148 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208204.1| (NC_000915) conserved hypothetical protein... 303 3e-82
ref|NP_224026.1| (NC_000921) putative [Helicobacter pylori ... 294 2e-79
ref|NP_273366.1| (NC_003112) conserved hypothetical protein... 166 9e-41
ref|NP_655246.1| (NC_003995) hypothetical protein predicted... 165 1e-40
ref|NP_284863.1| (NC_003116) conserved hypothetical protein... 165 1e-40
ref|NP_389258.1| (NC_000964) similar to hypothetical protei... 164 2e-40
ref|NP_371252.1| (NC_002758) conserved hypothetical protein... 157 3e-38
ref|NP_243107.1| (NC_002570) BH2241~unknown conserved prote... 155 9e-38
ref|NP_359195.1| (NC_003098) Conserved hypothetical protein... 121 2e-27
ref|NP_346210.1| (NC_003028) conserved hypothetical protein... 121 2e-27
ref|NP_355229.1| (NC_003062) AGR_C_4128p [Agrobacterium tum... 111 2e-24
ref|NP_539721.1| (NC_003317) Hypothetical Cytosolic Protein... 109 7e-24
ref|NP_421453.1| (NC_002696) conserved hypothetical protein... 108 2e-23
ref|NP_386491.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 105 1e-22
ref|NP_623163.1| (NC_003869) Enzyme related to GTP cyclohyd... 102 2e-21
ref|NP_213635.1| (NC_000918) hypothetical protein [Aquifex ... 100 8e-21
ref|NP_108416.1| (NC_002678) hypothetical protein [Mesorhiz... 95 2e-19
ref|NP_662521.1| (NC_002932) conserved hypothetical protein... 93 9e-19
gb|AAD56930.1|AF180145_22 (AF180145) hypothetical protein; ... 85 3e-16
ref|NP_442686.1| (NC_000911) unknown protein [Synechocystis... 82 2e-15
ref|NP_485205.1| (NC_003272) hypothetical protein [Nostoc s... 80 6e-15
ref|NP_251496.1| (NC_002516) conserved hypothetical protein... 79 1e-14
ref|NP_282850.1| (NC_002163) hypothetical protein Cj1724c [... 75 2e-13
ref|NP_245413.1| (NC_002663) unknown [Pasteurella multocida... 74 3e-13
ref|NP_518569.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 73 1e-12
ref|NP_289349.1| (NC_002655) orf, hypothetical protein [Esc... 72 1e-12
ref|NP_311681.1| (NC_002695) hypothetical protein [Escheric... 72 1e-12
ref|NP_439443.1| (NC_000907) conserved hypothetical protein... 72 2e-12
gb|AAC05800.1| (U11045) unknown [Buchnera aphidicola] 72 2e-12
ref|NP_660633.1| (NC_004061) hypothetical 29.0 kD protein [... 72 2e-12
ref|NP_417274.1| (NC_000913) orf, hypothetical protein [Esc... 72 2e-12
ref|NP_461888.1| (NC_003197) putative GTP cyclohydrolase I ... 71 3e-12
ref|NP_457363.1| (NC_003198) conserved hypothetical protein... 71 3e-12
ref|NP_404647.1| (NC_003143) conserved hypothetical protein... 71 3e-12
ref|NP_230549.1| (NC_002505) conserved hypothetical protein... 69 2e-11
ref|NP_299662.1| (NC_002488) conserved hypothetical protein... 65 2e-10
ref|NP_639130.1| (NC_003902) conserved hypothetical protein... 65 3e-10
ref|NP_228600.1| (NC_000853) conserved hypothetical protein... 64 3e-10
ref|NP_644152.1| (NC_003919) conserved hypothetical protein... 64 5e-10
ref|NP_359739.1| (NC_003103) unknown [Rickettsia conorii] >... 64 5e-10
ref|NP_220466.1| (NC_000963) unknown [Rickettsia prowazekii... 64 6e-10
ref|NP_147965.1| (NC_000854) GTP cyclohydrolase I [Aeropyru... 42 0.001
>ref|NP_208204.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||E64696 conserved hypothetical protein HP1413 - Helicobacter pylori
(strain 26695)
gb|AAD08456.1| (AE000642) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 148
Score = 303 bits (777), Expect = 3e-82
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MTPELNLKSLGAKTPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGV 60
MTPELNLKSLGAKTPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGV
Sbjct: 1 MTPELNLKSLGAKTPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGV 60
Query: 61 IFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASR 120
IFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASR
Sbjct: 61 IFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASR 120
Query: 121 GGIAIKPFVNYAIKEYQDFKEKRLLNAK 148
GGIAIKPFVNYAIKEYQDFKEKRLLNAK
Sbjct: 121 GGIAIKPFVNYAIKEYQDFKEKRLLNAK 148
>ref|NP_224026.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71822 hypothetical protein jhp1308 - Helicobacter pylori (strain J99)
gb|AAD06894.1| (AE001554) putative [Helicobacter pylori J99]
Length = 148
Score = 294 bits (753), Expect = 2e-79
Identities = 143/148 (96%), Positives = 145/148 (97%)
Query: 1 MTPELNLKSLGAKTPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGV 60
MTPE NLKSLGAKTPYIFEYNS LLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGV
Sbjct: 1 MTPESNLKSLGAKTPYIFEYNSDLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGV 60
Query: 61 IFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASR 120
IFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLV+LLEPKYLEVYGDF SR
Sbjct: 61 IFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVQLLEPKYLEVYGDFVSR 120
Query: 121 GGIAIKPFVNYAIKEYQDFKEKRLLNAK 148
GGIAIKPFVNYAIKEYQDFKEKRLL+AK
Sbjct: 121 GGIAIKPFVNYAIKEYQDFKEKRLLDAK 148
>ref|NP_273366.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||H81211 conserved hypothetical protein NMB0317 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40762.1| (AE002389) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 157
Score = 166 bits (419), Expect = 9e-41
Identities = 79/134 (58%), Positives = 97/134 (71%), Gaps = 2/134 (1%)
Query: 13 KTPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMV 72
KT Y Y ++LEAF N +P+ D + C EFTSLCP+T QPDF I+IRYIP KMV
Sbjct: 18 KTQYPTGYAPEILEAFDNKHPDNDYFVKFVCPEFTSLCPMTGQPDFATIYIRYIPHIKMV 77
Query: 73 ESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGIAIKPFVNY- 131
ESKSLKLYLFS+RNHG FHE C+N I+ DL+ L++PKY+EV+G+F RGGIAI PF NY
Sbjct: 78 ESKSLKLYLFSFRNHGDFHEDCVNIIMKDLIALMDPKYIEVFGEFTPRGGIAIHPFANYG 137
Query: 132 -AIKEYQDFKEKRL 144
A E++ KRL
Sbjct: 138 KAGTEFETLARKRL 151
>ref|NP_655246.1| (NC_003995) hypothetical protein predicted by GeneMark [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 165
Score = 165 bits (418), Expect = 1e-40
Identities = 73/135 (54%), Positives = 99/135 (73%), Gaps = 2/135 (1%)
Query: 14 TPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVE 73
T Y+FEY+ ++LE F N +PN D + C EFTSLCP T QPDF I+I YIP+ +MVE
Sbjct: 20 TKYLFEYSPEILEVFDNNHPNRDYFVKFNCPEFTSLCPKTGQPDFATIYISYIPEQRMVE 79
Query: 74 SKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGIAIKPFVNYAI 133
SKSLKLYLFS+RNHG FHE C+N I+ DL++L++P+Y+EV+G F RGGI+I P+ NY
Sbjct: 80 SKSLKLYLFSFRNHGDFHEDCMNVIMNDLIKLMDPRYIEVWGKFTPRGGISIDPYCNYGR 139
Query: 134 --KEYQDFKEKRLLN 146
+Y+ + R++N
Sbjct: 140 PGTKYEQMADYRMMN 154
>ref|NP_284863.1| (NC_003116) conserved hypothetical protein [Neisseria meningitidis
Z2491]
pir||G81789 conserved hypothetical protein NMA2170 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB85382.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis
Z2491]
Length = 157
Score = 165 bits (417), Expect = 1e-40
Identities = 79/134 (58%), Positives = 97/134 (71%), Gaps = 2/134 (1%)
Query: 13 KTPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMV 72
KT Y Y ++LEAF N +P+ D + C EFTSLCP+T QPDF I+IRYIP KMV
Sbjct: 18 KTRYPTGYAPEILEAFDNKHPDNDYFVKFVCPEFTSLCPMTGQPDFATIYIRYIPHIKMV 77
Query: 73 ESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGIAIKPFVNY- 131
ESKSLKLYLFS+RNHG FHE C+N I+ DL+ L++PKY+EV+G+F RGGIAI PF NY
Sbjct: 78 ESKSLKLYLFSFRNHGDFHEDCVNIIMKDLIALMDPKYIEVFGEFTPRGGIAIHPFANYG 137
Query: 132 -AIKEYQDFKEKRL 144
A E++ KRL
Sbjct: 138 KAGTEFEALARKRL 151
>ref|NP_389258.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
pir||D69868 conserved hypothetical protein ykvM - Bacillus subtilis
emb|CAB13248.1| (Z99111) similar to hypothetical proteins [Bacillus subtilis]
Length = 165
Score = 164 bits (415), Expect = 2e-40
Identities = 75/135 (55%), Positives = 97/135 (71%), Gaps = 2/135 (1%)
Query: 14 TPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVE 73
T Y+FEY +LE+FPN + N D + C EFTSLCP T QPDF I+I YIP +KMVE
Sbjct: 20 TNYLFEYAPDVLESFPNKHVNRDYFVKFNCPEFTSLCPKTGQPDFATIYISYIPDEKMVE 79
Query: 74 SKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGIAIKPFVNYAI 133
SKSLKLYLFS+RNHG FHE C+N I+ DL+ L++P+Y+EV+G F RGGI+I P+ NY
Sbjct: 80 SKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPRYIEVWGKFTPRGGISIDPYTNYGK 139
Query: 134 --KEYQDFKEKRLLN 146
+Y+ E R++N
Sbjct: 140 PGTKYEKMAEYRMMN 154
>ref|NP_371252.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_373938.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
ref|NP_645507.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB41916.1| (AP003131) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB56890.1| (AP003360) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB94555.1| (AP004824) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 166
Score = 157 bits (397), Expect = 3e-38
Identities = 73/133 (54%), Positives = 92/133 (68%), Gaps = 2/133 (1%)
Query: 16 YIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESK 75
Y F+Y +LE+F N + D + C EFTSLCPIT QPDF I+I YIP KMVESK
Sbjct: 23 YNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESK 82
Query: 76 SLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGIAIKPFVNYA--I 133
SLKLYLFS+RNHG FHE C+N I+ DL+ L++P Y+EV+G F RGGI+I P+ NY
Sbjct: 83 SLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPN 142
Query: 134 KEYQDFKEKRLLN 146
+Y+ E RL+N
Sbjct: 143 SKYEKMAEHRLMN 155
>ref|NP_243107.1| (NC_002570) BH2241~unknown conserved protein [Bacillus halodurans]
dbj|BAB05960.1| (AP001514) BH2241~unknown conserved protein [Bacillus halodurans]
Length = 165
Score = 155 bits (393), Expect = 9e-38
Identities = 70/135 (51%), Positives = 94/135 (68%), Gaps = 2/135 (1%)
Query: 14 TPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVE 73
T Y F+YN +LE F N + D + C EFT+LCP+T QPDF ++I YIP KMVE
Sbjct: 20 TTYTFDYNPDILEVFENKHQGRDYFVKFNCPEFTTLCPMTGQPDFATVYISYIPDVKMVE 79
Query: 74 SKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGIAIKPFVNYAI 133
SKSLKLYLFS+RNHG FHE +N I+ DL++L++P+Y+EV+G F RGGI+I P+ NY
Sbjct: 80 SKSLKLYLFSFRNHGDFHEDAMNIIMNDLIKLMDPRYIEVWGKFTPRGGISIDPYTNYGR 139
Query: 134 --KEYQDFKEKRLLN 146
+Y+ E R++N
Sbjct: 140 PGTKYEKMAEYRMMN 154
>ref|NP_359195.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAL00406.1| (AE008527) Conserved hypothetical protein [Streptococcus pneumoniae
R6]
Length = 190
Score = 121 bits (304), Expect = 2e-27
Identities = 61/102 (59%), Positives = 74/102 (71%), Gaps = 2/102 (1%)
Query: 45 EFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVR 104
+ + L IT+QPDF I I YIP VESKSLKLYLFSYRNHG FHE+CINTI DLV
Sbjct: 76 DMSLLGQITAQPDFATIHISYIPDKLCVESKSLKLYLFSYRNHGDFHENCINTIGKDLVN 135
Query: 105 LLEPKYLEVYGDFASRGGIAIKPFVNYAIK--EYQDFKEKRL 144
LL+P+YLEV+G F RGGI+I P+ NY + +Y+ E+RL
Sbjct: 136 LLDPRYLEVWGKFTPRGGISIDPYYNYGKQGTKYEGLAEQRL 177
>ref|NP_346210.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
gb|AAK75850.1| (AE007471) conserved hypothetical protein [Streptococcus pneumoniae
TIGR4]
Length = 154
Score = 121 bits (304), Expect = 2e-27
Identities = 61/102 (59%), Positives = 74/102 (71%), Gaps = 2/102 (1%)
Query: 45 EFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVR 104
+ + L IT+QPDF I I YIP VESKSLKLYLFSYRNHG FHE+CINTI DLV
Sbjct: 40 DMSLLGQITAQPDFATIHISYIPDKLCVESKSLKLYLFSYRNHGDFHENCINTIGKDLVN 99
Query: 105 LLEPKYLEVYGDFASRGGIAIKPFVNYAIK--EYQDFKEKRL 144
LL+P+YLEV+G F RGGI+I P+ NY + +Y+ E+RL
Sbjct: 100 LLDPRYLEVWGKFTPRGGISIDPYYNYGKQGTKYEGLAEQRL 141
>ref|NP_355229.1| (NC_003062) AGR_C_4128p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_532946.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK88014.1| (AE008142) AGR_C_4128p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL43262.1| (AE009176) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 171
Score = 111 bits (277), Expect = 2e-24
Identities = 61/128 (47%), Positives = 74/128 (57%)
Query: 1 MTPELNLKSLGAKTPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGV 60
+T L LG K +LE PN N D ++ EFTSLCP+T QPDF
Sbjct: 20 VTDVSGLSQLGTKVDTPESPEKAVLEKVPNGNAGTDYVVRFTAPEFTSLCPMTGQPDFAH 79
Query: 61 IFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASR 120
I I YIP D +VESKSLKL+L S+RNHG+FHE C I LV LL+PK+L + + R
Sbjct: 80 IVIDYIPGDFLVESKSLKLFLQSFRNHGAFHEDCSVYIAKRLVELLQPKWLRIGAYWYPR 139
Query: 121 GGIAIKPF 128
GGI I F
Sbjct: 140 GGIPIDVF 147
>ref|NP_539721.1| (NC_003317) Hypothetical Cytosolic Protein [Brucella melitensis]
gb|AAL51985.1| (AE009522) Hypothetical Cytosolic Protein [Brucella melitensis]
Length = 155
Score = 109 bits (273), Expect = 7e-24
Identities = 58/122 (47%), Positives = 73/122 (59%)
Query: 7 LKSLGAKTPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYI 66
LK LG+ T +LE NP + EF+SLCP+T QPDF + I Y+
Sbjct: 10 LKQLGSHTDIPLTPEEAVLERVANPQEGTPYCVRFTAPEFSSLCPMTGQPDFAHLVIDYV 69
Query: 67 PKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGIAIK 126
P +VESKSLKL+LFS+RNHG+FHE C TI LV LLEP++L + G + RGGI I
Sbjct: 70 PGKWLVESKSLKLFLFSFRNHGAFHEDCTVTIGKRLVDLLEPEWLRIGGYWYPRGGIPID 129
Query: 127 PF 128
F
Sbjct: 130 VF 131
>ref|NP_421453.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK24621.1| (AE005933) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 151
Score = 108 bits (269), Expect = 2e-23
Identities = 55/125 (44%), Positives = 74/125 (59%)
Query: 4 ELNLKSLGAKTPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFI 63
+LN+ LG + +LE PNP ++ L EFTSLCP+T QPDF + I
Sbjct: 3 DLNVTQLGRVVDAPESPEAAVLERVPNPQSDVLYLARFVAPEFTSLCPVTGQPDFAHLVI 62
Query: 64 RYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGI 123
Y P D ++ESKSLKLYL S+RNHGSFHE C + +V + +P++L + G + RGGI
Sbjct: 63 DYAPGDWLIESKSLKLYLTSFRNHGSFHEDCTVKVARKIVEIAQPRWLRIGGYWYPRGGI 122
Query: 124 AIKPF 128
I F
Sbjct: 123 PIDVF 127
>ref|NP_386491.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC46964.1| (AL591790) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 154
Score = 105 bits (263), Expect = 1e-22
Identities = 57/122 (46%), Positives = 71/122 (57%)
Query: 7 LKSLGAKTPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYI 66
L LGAK +LE P+ + D ++ EFTSLCP+T QPDF I I Y+
Sbjct: 9 LSQLGAKVDLPQSPEEAVLERVPSGHGGTDFVVRFTAPEFTSLCPMTGQPDFAHIVIDYV 68
Query: 67 PKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGIAIK 126
P +VESKSLKL+L S+RNHG+FHE C I LV LL PK+L + + RGGI I
Sbjct: 69 PDGWLVESKSLKLFLHSFRNHGAFHEDCTIEIAKRLVSLLSPKWLRIGAYWYPRGGIPID 128
Query: 127 PF 128
F
Sbjct: 129 VF 130
>ref|NP_623163.1| (NC_003869) Enzyme related to GTP cyclohydrolase I
[Thermoanaerobacter tengcongensis]
gb|AAM24767.1| (AE013112) Enzyme related to GTP cyclohydrolase I
[Thermoanaerobacter tengcongensis]
Length = 134
Score = 102 bits (253), Expect = 2e-21
Identities = 52/116 (44%), Positives = 70/116 (59%)
Query: 21 NSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLY 80
+ ++LE+ P + ++ EF+S+CP T PD + IRYIP K+VE KSLK Y
Sbjct: 19 DKEVLESIEYEYPEKNTIVEYITDEFSSVCPWTGLPDNAKLTIRYIPHKKLVELKSLKYY 78
Query: 81 LFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGIAIKPFVNYAIKEY 136
L SYRN G E IN IL DLV L+PK++E+ G+F RGGIA + Y +EY
Sbjct: 79 LTSYRNVGILQEHAINRILDDLVEFLQPKFMEIIGEFQERGGIATRIIARYEKEEY 134
>ref|NP_213635.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||F70380 conserved hypothetical protein aq_931 - Aquifex aeolicus
gb|AAC07039.1| (AE000714) hypothetical protein [Aquifex aeolicus]
Length = 129
Score = 99.8 bits (247), Expect = 8e-21
Identities = 52/105 (49%), Positives = 64/105 (60%)
Query: 19 EYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLK 78
E LEA+PNPNP D +I + EFT LCP + PDF I IRYIP +VE KSLK
Sbjct: 12 EIEKAQLEAWPNPNPERDYMIEITFPEFTCLCPRSGYPDFATIKIRYIPDKYIVELKSLK 71
Query: 79 LYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGI 123
L+L +RN HE+ N I L LL+P++LEV GDF RG +
Sbjct: 72 LWLNKFRNRYISHEAATNEIYQALYDLLKPRFLEVVGDFHPRGNV 116
>ref|NP_108416.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB53877.1| (AP003013) hypothetical protein [Mesorhizobium loti]
Length = 153
Score = 94.7 bits (234), Expect = 2e-19
Identities = 53/123 (43%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 7 LKSLGAKTPYIFEYNSQLLEAFPNPNPNLDP-LITLECKEFTSLCPITSQPDFGVIFIRY 65
L LGA + +LE P + P ++ C EFTSLCP+T QPDF I I Y
Sbjct: 7 LTQLGAHVETPQSPEAAVLETVPFSRGDGPPAIVRFTCPEFTSLCPVTGQPDFAHIVIDY 66
Query: 66 IPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGIAI 125
P +VESKSLKL++ S+RNHG+FHE C I +V +P +L + G + RGGI I
Sbjct: 67 APDAALVESKSLKLFMTSFRNHGAFHEDCTVMIGRRIVAATKPLWLRIGGYWYPRGGIPI 126
Query: 126 KPF 128
F
Sbjct: 127 DVF 129
>ref|NP_662521.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAG12198.1|AF287481_3 (AF287481) Orf117 [Chlorobium tepidum]
gb|AAM72863.1| (AE012919) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 117
Score = 92.8 bits (229), Expect = 9e-19
Identities = 46/112 (41%), Positives = 66/112 (58%)
Query: 21 NSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLY 80
N +++E F N P+ D I + EFTS+CP T PDFG I + Y+P +E KSLK Y
Sbjct: 2 NKEIIEVFDNTYPDRDYTIEIINPEFTSVCPKTGLPDFGTITVNYVPDKSCIELKSLKYY 61
Query: 81 LFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGIAIKPFVNYA 132
+RN G F+E+ N IL DLV +P+ + V ++ +RGGI V+Y+
Sbjct: 62 FLEFRNAGIFYENITNRILDDLVEACQPRRMTVKTEWNARGGITETVTVSYS 113
>gb|AAD56930.1|AF180145_22 (AF180145) hypothetical protein; zm12orf10 [Zymomonas mobilis]
Length = 113
Score = 84.7 bits (208), Expect = 3e-16
Identities = 45/106 (42%), Positives = 60/106 (56%)
Query: 10 LGAKTPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKD 69
LG +P L+ PNP + LI EFTSLCP+T QPDF + I Y+P
Sbjct: 6 LGKNSPIPQSPEEASLDYVPNPRQGKNYLIRFAIPEFTSLCPVTGQPDFAHLVIDYVPDK 65
Query: 70 KMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYG 115
+VESKSLKL+L S+RNH +FHE C I L ++ ++L + G
Sbjct: 66 LIVESKSLKLFLGSFRNHRAFHEDCTVGIGEKLFTEMKAQWLRIGG 111
>ref|NP_442686.1| (NC_000911) unknown protein [Synechocystis sp. PCC 6803]
pir||S77065 hypothetical protein slr0711 - Synechocystis sp. (strain PCC 6803)
dbj|BAA10757.1| (D64005) ORF_ID:slr0711~unknown protein [Synechocystis sp. PCC
6803]
Length = 137
Score = 81.6 bits (200), Expect = 2e-15
Identities = 41/105 (39%), Positives = 54/105 (51%)
Query: 19 EYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLK 78
E L FPNP P + + EFT CP + PDF +++ Y P K+VE KS+K
Sbjct: 19 EIRDAQLITFPNPRPGRRYDVHITLPEFTCKCPFSGYPDFATLYLTYCPDQKVVELKSIK 78
Query: 79 LYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGI 123
LY+ SYR+ HE N IL D V + P Y + DF RG +
Sbjct: 79 LYINSYRDRHIPHEEVTNQILDDFVAVANPLYARLKADFNPRGNV 123
>ref|NP_485205.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB73119.1| (AP003584) ORF_ID:all1162~hypothetical protein [Nostoc sp. PCC
7120]
Length = 136
Score = 80.1 bits (196), Expect = 6e-15
Identities = 41/99 (41%), Positives = 53/99 (53%)
Query: 25 LEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSY 84
L FPNP I + EFT CP + PDF I+I Y+P +++VE K+LKLY+ SY
Sbjct: 28 LITFPNPRVGRRYDINITLPEFTCKCPFSGYPDFATIYITYVPDERVVELKALKLYINSY 87
Query: 85 RNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGI 123
R+ HE N IL D V +P V DF RG +
Sbjct: 88 RDRYISHEESANQILDDFVAACDPLEANVKADFTPRGNV 126
>ref|NP_251496.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||F83296 conserved hypothetical protein PA2806 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG06194.1|AE004707_13 (AE004707) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 276
Score = 79.0 bits (193), Expect = 1e-14
Identities = 37/85 (43%), Positives = 52/85 (60%), Gaps = 2/85 (2%)
Query: 48 SLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLE 107
S CP+T QPD+G + + Y + ++ SL YL S+R H FHE C+ I LDL RLL+
Sbjct: 182 SNCPVTGQPDWGTLVVDY--RGPALDPASLLAYLVSFRQHQDFHEQCVERIFLDLQRLLQ 239
Query: 108 PKYLEVYGDFASRGGIAIKPFVNYA 132
P+ L VY + RGG+ I P+ + A
Sbjct: 240 PQALSVYARYVRRGGLDINPYRSLA 264
>ref|NP_282850.1| (NC_002163) hypothetical protein Cj1724c [Campylobacter jejuni]
pir||H81270 hypothetical protein Cj1724c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73710.1| (AL139079) hypothetical protein Cj1724c [Campylobacter jejuni]
Length = 127
Score = 75.5 bits (184), Expect = 2e-13
Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 17 IFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKS 76
I E++ + +E +PN N D +I + EF CP + PDF I++ Y+P +VE K+
Sbjct: 8 IKEFDVENMEIWPNDAKN-DYIIKITLPEFMCCCPRSGYPDFATIYLEYMPDKFVVELKA 66
Query: 77 LKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGI 123
+KLY+ ++ HE+ IN I L L+PK+++V GDF RG +
Sbjct: 67 IKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIKVVGDFNPRGNV 113
>ref|NP_245413.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02560.1| (AE006084) unknown [Pasteurella multocida]
Length = 279
Score = 74.3 bits (181), Expect = 3e-13
Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 18 FEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSL 77
+++N ++L + + L++ K S C IT+QPD+G + IRY + K ++ + L
Sbjct: 158 YQFNPEILTNCTHDQMVKESLVSHLLK---SNCLITNQPDWGTLQIRY--EGKQIDREKL 212
Query: 78 KLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGIAIKPF 128
Y+ S+R H FHE C+ I DL++ +P L VY + RGG+ I PF
Sbjct: 213 LRYIISFRQHNEFHEQCVERIFCDLMQFAKPDKLTVYARYTRRGGLDINPF 263
>ref|NP_518569.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD13976.1| (AL646059) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 277
Score = 72.8 bits (177), Expect = 1e-12
Identities = 43/124 (34%), Positives = 65/124 (51%), Gaps = 6/124 (4%)
Query: 5 LNLKSLGAKTPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIR 64
L+L L +T +++ LL A + +P + L++ K S C +T QPD+G + IR
Sbjct: 143 LSLDRLDVETD-VYQPTPGLLHADQDESPVEEVLVSHLLK---SNCLVTGQPDWGSVQIR 198
Query: 65 YIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGIA 124
Y+ + + L YL S+R H FHE C+ I +D+ R P L VY + RGG+
Sbjct: 199 YVGAP--INQEGLLKYLISFREHNEFHEQCVERIFMDIQRQCRPVKLAVYARYTRRGGLD 256
Query: 125 IKPF 128
I PF
Sbjct: 257 INPF 260
>ref|NP_289349.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
gb|AAG57908.1|AE005507_9 (AE005507) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
Length = 282
Score = 72.4 bits (176), Expect = 1e-12
Identities = 36/89 (40%), Positives = 52/89 (57%), Gaps = 2/89 (2%)
Query: 40 TLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTIL 99
TL S C IT QPD+G I I+Y + + ++ + L YL S+R+H FHE C+ I
Sbjct: 180 TLVSHLLKSNCLITHQPDWGSIQIQY--RGRQIDREKLLRYLVSFRHHNEFHEQCVERIF 237
Query: 100 LDLVRLLEPKYLEVYGDFASRGGIAIKPF 128
DL+R +P+ L VY + RGG+ I P+
Sbjct: 238 NDLLRFCQPEKLSVYARYTRRGGLDINPW 266
>ref|NP_311681.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
dbj|BAB37077.1| (AP002563) hypothetical protein [Escherichia coli O157:H7]
Length = 282
Score = 72.4 bits (176), Expect = 1e-12
Identities = 36/89 (40%), Positives = 52/89 (57%), Gaps = 2/89 (2%)
Query: 40 TLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTIL 99
TL S C IT QPD+G I I+Y + + ++ + L YL S+R+H FHE C+ I
Sbjct: 180 TLVSHLLKSNCLITHQPDWGSIQIQY--RGRQIDREKLLRYLVSFRHHNEFHEQCVERIF 237
Query: 100 LDLVRLLEPKYLEVYGDFASRGGIAIKPF 128
DL+R +P+ L VY + RGG+ I P+
Sbjct: 238 NDLLRFCQPEKLSVYARYTRRGGLDINPW 266
>ref|NP_439443.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44153|YQCD_HAEIN Hypothetical protein HI1291
pir||I64024 hypothetical protein HI1291 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22940.1| (U32809) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 279
Score = 72.0 bits (175), Expect = 2e-12
Identities = 33/81 (40%), Positives = 47/81 (57%), Gaps = 2/81 (2%)
Query: 48 SLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLE 107
S C IT+QPD+G + I Y+ K + + L Y+ S+R H FHE C+ I DL+ +
Sbjct: 185 SNCLITNQPDWGTLHIHYV--GKKINQEKLLRYVVSFRQHNEFHEQCVERIFCDLMHYAK 242
Query: 108 PKYLEVYGDFASRGGIAIKPF 128
P+ L VY + RGG+ I PF
Sbjct: 243 PEKLTVYARYTRRGGLDINPF 263
>gb|AAC05800.1| (U11045) unknown [Buchnera aphidicola]
Length = 248
Score = 71.6 bits (174), Expect = 2e-12
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 46 FTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRL 105
F S CP+T QPD+ I+I Y + SL YL S+R+H FHE CI I D+ +
Sbjct: 152 FKSNCPVTQQPDWASIYIAYTGLS--INHASLLRYLISFRSHNEFHEECIERIFNDINNI 209
Query: 106 LEPKYLEVYGDFASRGGIAIKPF 128
+P+ L VY + RGGI I P+
Sbjct: 210 CKPEELSVYARYTRRGGIDINPW 232
>ref|NP_660633.1| (NC_004061) hypothetical 29.0 kD protein [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
gb|AAM67844.1| (AE014105) hypothetical 29.0 kD protein [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
Length = 262
Score = 71.6 bits (174), Expect = 2e-12
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 46 FTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRL 105
F S CP+T QPD+ I+I Y + SL YL S+R+H FHE CI I D+ +
Sbjct: 166 FKSNCPVTQQPDWASIYIAYTGLS--INHASLLRYLISFRSHNEFHEECIERIFNDINNI 223
Query: 106 LEPKYLEVYGDFASRGGIAIKPF 128
+P+ L VY + RGGI I P+
Sbjct: 224 CKPEELSVYARYTRRGGIDINPW 246
>ref|NP_417274.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|Q46920|YQCD_ECOLI Hypothetical protein yqcD
pir||F65061 hypothetical protein b2794 - Escherichia coli (strain K-12)
gb|AAB40444.1| (U29581) ORF_o282 [Escherichia coli]
gb|AAC75836.1| (AE000363) orf, hypothetical protein [Escherichia coli K12]
Length = 282
Score = 71.6 bits (174), Expect = 2e-12
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 40 TLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTIL 99
TL S C IT QPD+G + I+Y + + ++ + L YL S+R+H FHE C+ I
Sbjct: 180 TLVSHLLKSNCLITHQPDWGSLQIQY--RGRQIDREKLLRYLVSFRHHNEFHEQCVERIF 237
Query: 100 LDLVRLLEPKYLEVYGDFASRGGIAIKPF 128
DL+R +P+ L VY + RGG+ I P+
Sbjct: 238 NDLLRFCQPEKLSVYARYTRRGGLDINPW 266
>ref|NP_461888.1| (NC_003197) putative GTP cyclohydrolase I [Salmonella typhimurium
LT2]
gb|AAL21847.1| (AE008836) putative GTP cyclohydrolase I [Salmonella typhimurium
LT2]
Length = 282
Score = 71.2 bits (173), Expect = 3e-12
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 40 TLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTIL 99
TL S C IT QPD+G I I+Y + + ++ + L YL S+R+H FHE C+ I
Sbjct: 180 TLVSHLLKSNCLITHQPDWGSIQIQY--RGRKIDREKLLRYLVSFRHHNEFHEQCVERIF 237
Query: 100 LDLVRLLEPKYLEVYGDFASRGGIAIKPF 128
D++R +P+ L VY + RGG+ I P+
Sbjct: 238 NDILRFCQPETLSVYARYTRRGGLDINPW 266
>ref|NP_457363.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD06081.1| (AL627276) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 282
Score = 71.2 bits (173), Expect = 3e-12
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 40 TLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTIL 99
TL S C IT QPD+G I I+Y + + ++ + L YL S+R+H FHE C+ I
Sbjct: 180 TLVSHLLKSNCLITHQPDWGSIQIQY--RGRKIDREKLLRYLVSFRHHNEFHEQCVERIF 237
Query: 100 LDLVRLLEPKYLEVYGDFASRGGIAIKPF 128
D++R +P+ L VY + RGG+ I P+
Sbjct: 238 NDILRFCQPETLSVYARYTRRGGLDINPW 266
>ref|NP_404647.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC89876.1| (AJ414146) conserved hypothetical protein [Yersinia pestis]
Length = 281
Score = 71.2 bits (173), Expect = 3e-12
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 18 FEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSL 77
+E+N+ L+ + + L++ K S C IT QPD+G + I Y + ++ ++L
Sbjct: 160 YEFNADYLQGAAGKDHVEESLVSHLLK---SNCLITHQPDWGSVQIHY--RGPQIDHEAL 214
Query: 78 KLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASRGGIAIKPF 128
YL S+R+H FHE C+ I D++R +P+ L VY + RGG+ I P+
Sbjct: 215 LRYLVSFRHHNEFHEQCVERIFNDIMRFCQPETLTVYARYTRRGGLDINPW 265
>ref|NP_230549.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||F82265 conserved hypothetical protein VC0902 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94064.1| (AE004174) conserved hypothetical protein [Vibrio cholerae]
Length = 287
Score = 68.6 bits (166), Expect = 2e-11
Identities = 33/81 (40%), Positives = 47/81 (57%), Gaps = 2/81 (2%)
Query: 48 SLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLE 107
S C IT+QPD+G + I Y + ++L YL S+R H FHE C+ I D++R +
Sbjct: 192 SNCLITNQPDWGSVEIAY--HGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQ 249
Query: 108 PKYLEVYGDFASRGGIAIKPF 128
P+ L VY + RGG+ I PF
Sbjct: 250 PQSLTVYARYTRRGGLDINPF 270
>ref|NP_299662.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||H82565 conserved hypothetical protein XF2383 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF85182.1|AE004047_13 (AE004047) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 275
Score = 65.5 bits (158), Expect = 2e-10
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 40 TLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTIL 99
TL F S CP+T QPD+ + +RY ++ + L Y S+R+H FHE C+ I
Sbjct: 171 TLTSTLFKSNCPVTGQPDWASVTVRYFGVP--IDHEGLLRYFISFRHHAEFHEQCVERIF 228
Query: 100 LDLVRLLEPKYLEVYGDFASRGGIAIKP 127
D+++ P+ L V + RGG+ I P
Sbjct: 229 QDVLQRCSPQCLAVEARYTRRGGLDINP 256
>ref|NP_639130.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM43031.1| (AE012499) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 271
Score = 64.7 bits (156), Expect = 3e-10
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 48 SLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLE 107
S CP+T QPD+ + +RY + ++ + L YL S+R+H FHE C+ I DL+
Sbjct: 175 SNCPVTGQPDWASVTLRY--RGAPIDREGLLRYLVSFRDHADFHEQCVERIFQDLLVRCA 232
Query: 108 PKYLEVYGDFASRGGIAIKP 127
P++L V + RGG+ I P
Sbjct: 233 PQWLVVEARYTRRGGLDINP 252
>ref|NP_228600.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||H72333 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35873.1|AE001747_16 (AE001747) conserved hypothetical protein [Thermotoga maritima]
Length = 137
Score = 64.3 bits (155), Expect = 3e-10
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 36 DPLITLECKEFTSLCPITSQPDFGVIFIRYIPKD-KMVESKSLKLYLFSYRNHGSFHESC 94
D I +E EF+++CP + PD G + I Y P K+VE KSLK Y S+RN G + E
Sbjct: 31 DEYIKIETDEFSAVCPFSGLPDIGRVIIEYYPDGGKIVELKSLKYYFVSFRNVGIYQEEA 90
Query: 95 INTILLDLVRLLEPKYLEVYGDFASRGGI 123
I DL LL+ + V + RGGI
Sbjct: 91 TKRIYEDLKNLLKTDRIRVTVIYNIRGGI 119
>ref|NP_644152.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM38688.1| (AE012034) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 271
Score = 63.9 bits (154), Expect = 5e-10
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 48 SLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLE 107
S CP+T QPD+ + +RY + ++ + L YL S+R+H FHE C+ I D++
Sbjct: 175 SNCPVTGQPDWASVTLRY--RGAPIDREGLLRYLVSFRDHAEFHEQCVERIFNDVLTQCA 232
Query: 108 PKYLEVYGDFASRGGIAIKP 127
P++L V + RGG+ I P
Sbjct: 233 PQWLVVEARYTRRGGLDINP 252
>ref|NP_359739.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL02640.1| (AE008577) unknown [Rickettsia conorii]
Length = 273
Score = 63.9 bits (154), Expect = 5e-10
Identities = 33/81 (40%), Positives = 45/81 (54%), Gaps = 2/81 (2%)
Query: 48 SLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLE 107
S C +T QPD+G I I+Y K K ++ S YL S+RN F E C I D+ +
Sbjct: 177 SNCLVTGQPDWGTIVIKY--KGKKLKYDSFLKYLISFRNCNEFAEQCAERIFTDIKNAIS 234
Query: 108 PKYLEVYGDFASRGGIAIKPF 128
P +L +Y +A RGGI I P+
Sbjct: 235 PDFLSIYIVYARRGGIDICPY 255
>ref|NP_220466.1| (NC_000963) unknown [Rickettsia prowazekii]
pir||H71715 hypothetical protein RP072 - Rickettsia prowazekii
emb|CAA14543.1| (AJ235270) unknown [Rickettsia prowazekii]
Length = 273
Score = 63.5 bits (153), Expect = 6e-10
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 46 FTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRL 105
F S C +T QPD+G I I+Y K K ++ S YL S+RN F E C I +D+
Sbjct: 175 FKSNCLVTGQPDWGTIVIKY--KGKKLKYDSFLRYLISFRNFNEFAEQCAERIFIDIKNS 232
Query: 106 LEPKYLEVYGDFASRGGIAIKPFVNYAIKEYQDFKEKRLL 145
+ +L +Y + RGGI I P+ K Y +KRL+
Sbjct: 233 INLDFLSIYIVYTRRGGIDICPY-RSTDKSYTLPNDKRLI 271
>ref|NP_147965.1| (NC_000854) GTP cyclohydrolase I [Aeropyrum pernix]
pir||G72626 probable GTP cyclohydrolase I APE1471 - Aeropyrum pernix (strain
K1)
dbj|BAA80469.1| (AP000061) 147aa long hypothetical GTP cyclohydrolase I [Aeropyrum
pernix]
Length = 147
Score = 42.4 bits (98), Expect = 0.001
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 48 SLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLE 107
++CP T PD + I Y+ +D +E+ SL +L S+R E + I L L LL+
Sbjct: 54 AVCPFTGAPDSYDVEIEYVSRDACLEALSLASWLESFRGVKISQEQLAHEIALTLKELLK 113
Query: 108 PKYL 111
P+Y+
Sbjct: 114 PEYV 117
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.141 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,742,617
Number of Sequences: 1026957
Number of extensions: 3931965
Number of successful extensions: 7048
Number of sequences better than 1.0e-02: 42
Number of HSP's better than 0.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6967
Number of HSP's gapped (non-prelim): 62
length of query: 148
length of database: 324,149,939
effective HSP length: 110
effective length of query: 38
effective length of database: 211,184,669
effective search space: 8025017422
effective search space used: 8025017422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 91 (39.7 bits)