BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646032|ref|NP_208214.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(84 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208214.1| (NC_000915) conserved hypothetical protein... 171 2e-42
ref|NP_224036.1| (NC_000921) putative [Helicobacter pylori ... 164 3e-40
ref|NP_281844.1| (NC_002163) hypothetical protein Cj0667 [C... 78 2e-14
ref|NP_623980.1| (NC_003869) Ribosome-associated heat shock... 55 1e-07
ref|NP_387940.1| (NC_000964) similar to hypothetical protei... 54 4e-07
ref|NP_266171.1| (NC_002662) conserved hypothetical protein... 52 1e-06
ref|NP_602934.1| (NC_003454) Heat shock protein 15 [Fusobac... 52 1e-06
ref|NP_240939.1| (NC_002570) BH0073~unknown conserved prote... 52 1e-06
ref|NP_654005.1| (NC_003995) S4, S4 RNA-binding domain [Bac... 52 2e-06
ref|NP_563394.1| (NC_003366) conserved hypothetical protein... 49 2e-05
ref|NP_371030.1| (NC_002758) conserved hypothetical protein... 48 3e-05
ref|NP_349806.1| (NC_003030) Predicted RNA-binding protein,... 47 3e-05
ref|NP_606343.1| (NC_003485) conserved hypothetical protein... 43 7e-04
ref|NP_469593.1| (NC_003212) highly similar to B. subtilis ... 43 7e-04
ref|NP_344560.1| (NC_003028) S4 domain protein [Streptococc... 43 7e-04
ref|NP_463747.1| (NC_003210) highly similar to B. subtilis ... 43 7e-04
sp|Q92F59|Y248_LISIN Hypothetical protein Lin0248 43 7e-04
sp|Q9ZIM1|Y216_LISMO Hypothetical protein Lmo0216 43 7e-04
ref|NP_268430.1| (NC_002737) conserved hypothetical protein... 43 9e-04
ref|NP_232361.1| (NC_002505) conserved hypothetical protein... 40 0.007
ref|NP_228038.1| (NC_000853) conserved hypothetical protein... 39 0.009
>ref|NP_208214.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O25966|YE23_HELPY Hypothetical protein HP1423
pir||G64697 conserved hypothetical protein HP1423 - Helicobacter pylori
(strain 26695)
gb|AAD08465.1| (AE000642) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 84
Score = 171 bits (432), Expect = 2e-42
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI
Sbjct: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
Query: 61 LQIPALKNVPRKDTHLYIAPKTKE 84
LQIPALKNVPRKDTHLYIAPKTKE
Sbjct: 61 LQIPALKNVPRKDTHLYIAPKTKE 84
>ref|NP_224036.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZJJ0|YE23_HELPJ Hypothetical protein JHP1318
pir||G71823 hypothetical protein jhp1318 - Helicobacter pylori (strain J99)
gb|AAD06891.1| (AE001554) putative [Helicobacter pylori J99]
Length = 84
Score = 164 bits (414), Expect = 3e-40
Identities = 80/84 (95%), Positives = 80/84 (95%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAK SKEVK GD ISLHYLKGIEEYTI
Sbjct: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKPSKEVKTGDVISLHYLKGIEEYTI 60
Query: 61 LQIPALKNVPRKDTHLYIAPKTKE 84
LQIP LKNVPRKDTHLYIAPKTKE
Sbjct: 61 LQIPTLKNVPRKDTHLYIAPKTKE 84
>ref|NP_281844.1| (NC_002163) hypothetical protein Cj0667 [Campylobacter jejuni]
pir||C81337 hypothetical protein Cj0667 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72944.1| (AL139076) hypothetical protein Cj0667 [Campylobacter jejuni]
Length = 81
Score = 78.2 bits (191), Expect = 2e-14
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
MR+DKFL V + KRR ++ DMC G V +NG KASKEVK D I+LH+ + ++Y +
Sbjct: 1 MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVDDIITLHFTEYTQKYKV 60
Query: 61 LQIPALKNVPRKDTHLYI 78
L +P+ K++P+ + Y+
Sbjct: 61 LALPSTKSIPKNAQNEYV 78
>ref|NP_623980.1| (NC_003869) Ribosome-associated heat shock protein implicated in
the recycling of the 50S subunit (S4 paralog)
[Thermoanaerobacter tengcongensis]
gb|AAM25584.1| (AE013187) Ribosome-associated heat shock protein implicated in
the recycling of the 50S subunit (S4 paralog)
[Thermoanaerobacter tengcongensis]
Length = 84
Score = 55.5 bits (132), Expect = 1e-07
Identities = 25/63 (39%), Positives = 41/63 (64%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
+R+DKFL+ L+KRR +A + C+ G V++NG AK S +VK GD + LH + + +
Sbjct: 4 LRVDKFLKVSRLIKRRTVAKEACDKGLVFINGKQAKGSDQVKEGDILELHLGDRVVKVEV 63
Query: 61 LQI 63
L++
Sbjct: 64 LKV 66
>ref|NP_387940.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|P37557|YABO_BACSU Hypothetical protein yabO
pir||S66089 conserved hypothetical protein yabO - Bacillus subtilis
dbj|BAA05294.1| (D26185) unknown [Bacillus subtilis]
emb|CAB11835.1| (Z99104) similar to hypothetical proteins [Bacillus subtilis]
Length = 86
Score = 53.9 bits (128), Expect = 4e-07
Identities = 27/73 (36%), Positives = 48/73 (64%), Gaps = 3/73 (4%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
MR+DKFL+ L+KRR LA ++ + G + +NG+ AKAS +VK GD +++ + ++
Sbjct: 1 MRLDKFLKVSRLIKRRTLAKEVADQGRISINGNQAKASSDVKPGDELTVRF---GQKLVT 57
Query: 61 LQIPALKNVPRKD 73
+Q+ LK+ +K+
Sbjct: 58 VQVNELKDTTKKE 70
>ref|NP_266171.1| (NC_002662) conserved hypothetical protein [Lactococcus lactis
subsp. lactis]
gb|AAK04113.1|AE006241_2 (AE006241) conserved hypothetical protein [Lactococcus lactis
subsp. lactis]
Length = 105
Score = 52.4 bits (124), Expect = 1e-06
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
MR+DKFL+ L+KRR +A ++ + G + +NG AK+S +VK DTI + + I E
Sbjct: 17 MRLDKFLKVSRLIKRRPVAKEVADKGRIKINGKLAKSSSDVKFNDTIEIRFGNKIVE--- 73
Query: 61 LQIPALKNVPRKD 73
+++ LK RK+
Sbjct: 74 VRVAELKEFTRKE 86
>ref|NP_602934.1| (NC_003454) Heat shock protein 15 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94233.1| (AE010517) Heat shock protein 15 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 99
Score = 52.0 bits (123), Expect = 1e-06
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
MR+DKFL+ ++KRR +A + + G V L+G KA+ EVK G + + Y ++ I
Sbjct: 1 MRLDKFLKVSRIIKRRPIAKLVVDGGKVKLDGKVVKAAAEVKVGQILEIEYYNKYFKFEI 60
Query: 61 LQIPALKNVPRKDT 74
LQ+P L NV + T
Sbjct: 61 LQVP-LGNVSKDKT 73
>ref|NP_240939.1| (NC_002570) BH0073~unknown conserved protein [Bacillus
halodurans]
sp|Q9KGI8|Y073_BACHD Hypothetical protein BH0073
dbj|BAB03792.1| (AP001507) BH0073~unknown conserved protein [Bacillus halodurans]
Length = 88
Score = 52.0 bits (123), Expect = 1e-06
Identities = 27/73 (36%), Positives = 44/73 (59%), Gaps = 3/73 (4%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
MR+DKFL+ L+KRR LA ++C G + +NG+ AKA VK GD + + + ++
Sbjct: 1 MRLDKFLKVSRLIKRRTLAKEVCEQGRITVNGNVAKAGTVVKEGDELVIRF---GQKLVT 57
Query: 61 LQIPALKNVPRKD 73
++I +K RK+
Sbjct: 58 VEITNVKETVRKE 70
>ref|NP_654005.1| (NC_003995) S4, S4 RNA-binding domain [Bacillus anthracis A2012]
[Bacillus anthracis str. A2012]
Length = 91
Score = 51.6 bits (122), Expect = 2e-06
Identities = 27/73 (36%), Positives = 45/73 (60%), Gaps = 3/73 (4%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
MR+DKFL+ L+KRR LA ++ + G + +NG AKAS +VK D +++ + + I
Sbjct: 1 MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSDVKVADELTIRFGQKI---VT 57
Query: 61 LQIPALKNVPRKD 73
++I LK +K+
Sbjct: 58 VKINELKETTKKE 70
>ref|NP_563394.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB82184.1| (AP003194) conserved hypothetical protein [Clostridium
perfringens]
Length = 86
Score = 48.5 bits (114), Expect = 2e-05
Identities = 21/49 (42%), Positives = 32/49 (64%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISL 49
MR+DK+L+ ++KRR +A + C G V +NG AK S ++K GD I +
Sbjct: 1 MRLDKYLKVSRIIKRRTVAKEACESGRVIINGKVAKPSNDIKEGDIIEI 49
>ref|NP_371030.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_373716.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
ref|NP_645278.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB41694.1| (AP003130) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB56668.1| (AP003359) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB94326.1| (AP004823) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 87
Score = 47.8 bits (112), Expect = 3e-05
Identities = 24/73 (32%), Positives = 44/73 (59%), Gaps = 3/73 (4%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
MR+DK+L+ L+KRR LA ++ + G + +NG+ AKA +VK D +++ + ++
Sbjct: 1 MRLDKYLKVSRLIKRRTLAKEVSDQGRITINGNVAKAGSDVKVEDVLTIRF---GQKLVT 57
Query: 61 LQIPALKNVPRKD 73
+++ AL KD
Sbjct: 58 VKVTALNEHASKD 70
>ref|NP_349806.1| (NC_003030) Predicted RNA-binding protein, YABO B.subtilis
ortholog [Clostridium acetobutylicum]
gb|AAK81146.1|AE007816_10 (AE007816) Predicted RNA-binding protein, YABO B.subtilis
ortholog [Clostridium acetobutylicum]
Length = 84
Score = 47.4 bits (111), Expect = 3e-05
Identities = 25/74 (33%), Positives = 41/74 (54%), Gaps = 2/74 (2%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
MR+DK+L+ ++KRR +A + C G V +NG AK +V+ D I + Y + + +
Sbjct: 1 MRLDKYLKVSRIIKRRTVAKEACESGRVSINGKVAKPGTDVEEDDIIEIRYASKVFKAKV 60
Query: 61 LQIP--ALKNVPRK 72
+ I ALK +K
Sbjct: 61 VNITNHALKEDAKK 74
>ref|NP_606343.1| (NC_003485) conserved hypothetical protein [Streptococcus
pyogenes MGAS8232]
gb|AAL96842.1| (AE009953) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 90
Score = 43.1 bits (100), Expect = 7e-04
Identities = 21/63 (33%), Positives = 38/63 (59%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
MR+DK+L+ L+KRR +A ++ + G + +NG AK+S VK D I + + + +
Sbjct: 1 MRLDKYLKVSRLIKRRSVAKEVADKGRIKVNGILAKSSTNVKLNDHIEISFGNKLLTVRV 60
Query: 61 LQI 63
++I
Sbjct: 61 IEI 63
>ref|NP_469593.1| (NC_003212) highly similar to B. subtilis YabO protein [Listeria
innocua]
emb|CAC95481.1| (AL596164) highly similar to B. subtilis YabO protein [Listeria
innocua]
Length = 92
Score = 43.1 bits (100), Expect = 7e-04
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHY 51
MR+DK+L+ L+KRR +A ++ G + +NG AK VK+GD + + +
Sbjct: 5 MRLDKYLKVSRLIKRRTVAKEVAEKGRIAVNGVTAKPGTNVKSGDELVIRF 55
>ref|NP_344560.1| (NC_003028) S4 domain protein [Streptococcus pneumoniae TIGR4]
ref|NP_357601.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
sp|Q97TC9|Y007_STRPN Hypothetical protein SP0007
gb|AAK74200.1| (AE007318) S4 domain protein [Streptococcus pneumoniae TIGR4]
gb|AAK98811.1| (AE008385) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
Length = 88
Score = 43.1 bits (100), Expect = 7e-04
Identities = 17/51 (33%), Positives = 34/51 (66%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHY 51
MR+DK+L+ ++KRR +A ++ + G + +NG AK+S ++K D + + +
Sbjct: 1 MRLDKYLKVSRIIKRRTVAKEVADKGRIKVNGILAKSSTDLKVNDQVEIRF 51
>ref|NP_463747.1| (NC_003210) highly similar to B. subtilis YabO protein [Listeria
monocytogenes EGD-e]
gb|AAC98902.1| (AF023181) unknown protein [Listeria monocytogenes]
emb|CAD00743.1| (AL591974) highly similar to B. subtilis YabO protein [Listeria
monocytogenes]
Length = 92
Score = 43.1 bits (100), Expect = 7e-04
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHY 51
MR+DK+L+ L+KRR +A ++ G + +NG AK VK+GD + + +
Sbjct: 5 MRLDKYLKVSRLIKRRTVAKEVAEKGRIAVNGVTAKPGTNVKSGDELVIRF 55
>sp|Q92F59|Y248_LISIN Hypothetical protein Lin0248
Length = 88
Score = 43.1 bits (100), Expect = 7e-04
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHY 51
MR+DK+L+ L+KRR +A ++ G + +NG AK VK+GD + + +
Sbjct: 1 MRLDKYLKVSRLIKRRTVAKEVAEKGRIAVNGVTAKPGTNVKSGDELVIRF 51
>sp|Q9ZIM1|Y216_LISMO Hypothetical protein Lmo0216
Length = 88
Score = 43.1 bits (100), Expect = 7e-04
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHY 51
MR+DK+L+ L+KRR +A ++ G + +NG AK VK+GD + + +
Sbjct: 1 MRLDKYLKVSRLIKRRTVAKEVAEKGRIAVNGVTAKPGTNVKSGDELVIRF 51
>ref|NP_268430.1| (NC_002737) conserved hypothetical proteins [Streptococcus
pyogenes] [Streptococcus pyogenes M1 GAS]
gb|AAK33152.1| (AE006472) conserved hypothetical proteins [Streptococcus
pyogenes M1 GAS]
Length = 98
Score = 42.7 bits (99), Expect = 9e-04
Identities = 20/63 (31%), Positives = 38/63 (59%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
MR+DK+L+ L+KRR +A ++ + G + +NG AK+S +K D I + + + +
Sbjct: 9 MRLDKYLKVSRLIKRRSVAKEVADKGRIKVNGILAKSSTNIKLNDHIEISFGNKLLTVRV 68
Query: 61 LQI 63
++I
Sbjct: 69 IEI 71
>ref|NP_232361.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||G82038 conserved hypothetical protein VC2735 [imported] - Vibrio
cholerae (group O1 strain N16961)
gb|AAF95874.1| (AE004339) conserved hypothetical protein [Vibrio cholerae]
Length = 127
Score = 39.7 bits (91), Expect = 0.007
Identities = 25/61 (40%), Positives = 35/61 (56%), Gaps = 2/61 (3%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
+R+DK+L + K R LA +M G V NG AK SK V+ G I+L +G +E TI
Sbjct: 10 VRLDKWLWAARFYKTRSLARNMVEGGKVHYNGQRAKPSKSVEIGAQITLR--QGHDEKTI 67
Query: 61 L 61
+
Sbjct: 68 I 68
>ref|NP_228038.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||B72401 conserved hypothetical protein - Thermotoga maritima (strain
MSB8)
gb|AAD35315.1|AE001707_2 (AE001707) conserved hypothetical protein [Thermotoga maritima]
Length = 77
Score = 39.3 bits (90), Expect = 0.009
Identities = 22/49 (44%), Positives = 31/49 (62%), Gaps = 1/49 (2%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISL 49
MR+D FL+ + +VKRR +A + V +NG AKAS EVK GD + +
Sbjct: 1 MRLDLFLK-ISVVKRRTIAQKLLKGQRVLVNGRPAKASYEVKDGDIVEV 48
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,157,775
Number of Sequences: 1026957
Number of extensions: 1546285
Number of successful extensions: 3441
Number of sequences better than 1.0e-02: 21
Number of HSP's better than 0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3422
Number of HSP's gapped (non-prelim): 21
length of query: 84
length of database: 324,149,939
effective HSP length: 60
effective length of query: 24
effective length of database: 262,532,519
effective search space: 6300780456
effective search space used: 6300780456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)