BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646033|ref|NP_208215.1| hypothetical protein
[Helicobacter pylori 26695]
(206 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208215.1| (NC_000915) hypothetical protein [Helicoba... 424 e-118
ref|NP_224037.1| (NC_000921) putative [Helicobacter pylori ... 384 e-106
>ref|NP_208215.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64697 hypothetical protein HP1424 - Helicobacter pylori (strain 26695)
gb|AAD08473.1| (AE000643) H. pylori predicted coding region HP1424 [Helicobacter
pylori 26695]
Length = 206
Score = 424 bits (1089), Expect = e-118
Identities = 206/206 (100%), Positives = 206/206 (100%)
Query: 1 MKFQIMSLLATLLLASCLPPKGHHSGLVNLYIAHQGQSVRTYWRKVDRGVIAKHNEALKK 60
MKFQIMSLLATLLLASCLPPKGHHSGLVNLYIAHQGQSVRTYWRKVDRGVIAKHNEALKK
Sbjct: 1 MKFQIMSLLATLLLASCLPPKGHHSGLVNLYIAHQGQSVRTYWRKVDRGVIAKHNEALKK 60
Query: 61 DPKAKLKDPRGPLFMLGSERFMLLWKNRYALAKPQSFRLEPGFYYLDSFSVETQKGVLQS 120
DPKAKLKDPRGPLFMLGSERFMLLWKNRYALAKPQSFRLEPGFYYLDSFSVETQKGVLQS
Sbjct: 61 DPKAKLKDPRGPLFMLGSERFMLLWKNRYALAKPQSFRLEPGFYYLDSFSVETQKGVLQS 120
Query: 121 APGYSYTKNGYDFKNNRPFFLAFEVKPDGKTILPSVELSLIKTPRGFLGVFLFDNNEKGT 180
APGYSYTKNGYDFKNNRPFFLAFEVKPDGKTILPSVELSLIKTPRGFLGVFLFDNNEKGT
Sbjct: 121 APGYSYTKNGYDFKNNRPFFLAFEVKPDGKTILPSVELSLIKTPRGFLGVFLFDNNEKGT 180
Query: 181 NAKWIEGSLNLKLKNASFKDAWGLEQ 206
NAKWIEGSLNLKLKNASFKDAWGLEQ
Sbjct: 181 NAKWIEGSLNLKLKNASFKDAWGLEQ 206
>ref|NP_224037.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71821 hypothetical protein jhp1319 - Helicobacter pylori (strain J99)
gb|AAD06897.1| (AE001555) putative [Helicobacter pylori J99]
Length = 206
Score = 384 bits (985), Expect = e-106
Identities = 182/206 (88%), Positives = 192/206 (92%)
Query: 1 MKFQIMSLLATLLLASCLPPKGHHSGLVNLYIAHQGQSVRTYWRKVDRGVIAKHNEALKK 60
MKFQI+SLL LLASCLPPKGHHSGLVN+YIAHQGQSVRTYWRKVDRGV+AKHNE LK+
Sbjct: 1 MKFQIVSLLLAFLLASCLPPKGHHSGLVNMYIAHQGQSVRTYWRKVDRGVVAKHNETLKE 60
Query: 61 DPKAKLKDPRGPLFMLGSERFMLLWKNRYALAKPQSFRLEPGFYYLDSFSVETQKGVLQS 120
+PK KLKDP+GPLFMLGS RFMLLWKNRY LAK QSF+LEPGFYYLDSFSVETQKG+LQS
Sbjct: 61 NPKIKLKDPKGPLFMLGSNRFMLLWKNRYTLAKVQSFKLEPGFYYLDSFSVETQKGILQS 120
Query: 121 APGYSYTKNGYDFKNNRPFFLAFEVKPDGKTILPSVELSLIKTPRGFLGVFLFDNNEKGT 180
APGYSYTKNGYDFKNNRPFFLAFEVKPD K +LPSVELSLIKTPRGFLGVFLFDNNEKG
Sbjct: 121 APGYSYTKNGYDFKNNRPFFLAFEVKPDSKIVLPSVELSLIKTPRGFLGVFLFDNNEKGA 180
Query: 181 NAKWIEGSLNLKLKNASFKDAWGLEQ 206
N WIEGSLNLKLKNASFKDAW LE+
Sbjct: 181 NTPWIEGSLNLKLKNASFKDAWELER 206
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.139 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,323,735
Number of Sequences: 1026957
Number of extensions: 6117842
Number of successful extensions: 10567
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10565
Number of HSP's gapped (non-prelim): 2
length of query: 206
length of database: 324,149,939
effective HSP length: 115
effective length of query: 91
effective length of database: 206,049,884
effective search space: 18750539444
effective search space used: 18750539444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 94 (40.8 bits)