BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646035|ref|NP_208217.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(180 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208217.1| (NC_000915) conserved hypothetical protein... 368 e-101
>ref|NP_208217.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||B64698 conserved hypothetical protein HP1426 - Helicobacter pylori
(strain 26695)
gb|AAD08466.1| (AE000643) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 180
Score = 368 bits (944), Expect = e-101
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MLGFNLSHAIDESEPNKLVGKKVQEALAKEKAKAKNQRADKSAFFAGLGYSGMFSWNLAY 60
MLGFNLSHAIDESEPNKLVGKKVQEALAKEKAKAKNQRADKSAFFAGLGYSGMFSWNLAY
Sbjct: 1 MLGFNLSHAIDESEPNKLVGKKVQEALAKEKAKAKNQRADKSAFFAGLGYSGMFSWNLAY 60
Query: 61 KDSFVLLRHYDFNFGGRLLERKDPSTILNGFNFKVGYQYAAPVKIKKMGFGVRGGFQYSY 120
KDSFVLLRHYDFNFGGRLLERKDPSTILNGFNFKVGYQYAAPVKIKKMGFGVRGGFQYSY
Sbjct: 61 KDSFVLLRHYDFNFGGRLLERKDPSTILNGFNFKVGYQYAAPVKIKKMGFGVRGGFQYSY 120
Query: 121 KAGNYMEKDKYQQHLFGVPIGIISPVSIFNGGMITMSTYSFFMDFYTMCMKMRSFSSVIL 180
KAGNYMEKDKYQQHLFGVPIGIISPVSIFNGGMITMSTYSFFMDFYTMCMKMRSFSSVIL
Sbjct: 121 KAGNYMEKDKYQQHLFGVPIGIISPVSIFNGGMITMSTYSFFMDFYTMCMKMRSFSSVIL 180
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.140 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,675,631
Number of Sequences: 1026957
Number of extensions: 5172410
Number of successful extensions: 9754
Number of sequences better than 1.0e-02: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9753
Number of HSP's gapped (non-prelim): 1
length of query: 180
length of database: 324,149,939
effective HSP length: 113
effective length of query: 67
effective length of database: 208,103,798
effective search space: 13942954466
effective search space used: 13942954466
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 93 (40.4 bits)