BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646037|ref|NP_208219.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(357 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208219.1| (NC_000915) conserved hypothetical protein... 706 0.0
ref|NP_224043.1| (NC_000921) putative [Helicobacter pylori ... 681 0.0
ref|NP_282839.1| (NC_002163) hypothetical protein Cj1713 [C... 385 e-106
ref|NP_540784.1| (NC_003317) FLORFENICOL RESISTANCE PROTEIN... 233 2e-60
ref|NP_213292.1| (NC_000918) hypothetical protein [Aquifex ... 233 3e-60
ref|NP_105248.1| (NC_002678) hypothetical protein [Mesorhiz... 230 2e-59
ref|NP_387320.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 227 2e-58
ref|NP_389457.1| (NC_000964) similar to hypothetical protei... 222 4e-57
ref|NP_623116.1| (NC_003869) predicted Fe-S-cluster redox e... 221 1e-56
ref|NP_533338.1| (NC_003304) conserved hypothetical protein... 221 1e-56
ref|NP_355610.1| (NC_003062) AGR_C_4846p [Agrobacterium tum... 221 1e-56
ref|NP_371742.1| (NC_002758) conserved hypothetical protein... 220 2e-56
ref|NP_229514.1| (NC_000853) conserved hypothetical protein... 220 2e-56
ref|NP_645918.1| (NC_003923) conserved hypothetical protein... 219 5e-56
ref|NP_562656.1| (NC_003366) conserved hypothetical protein... 218 8e-56
ref|NP_469827.1| (NC_003212) similar to conserved hypotheti... 213 2e-54
ref|NP_464010.1| (NC_003210) similar to conserved hypotheti... 213 3e-54
ref|NP_269606.1| (NC_002737) conserved hypothetical protein... 212 5e-54
ref|NP_607618.1| (NC_003485) conserved hypothetical protein... 211 8e-54
ref|NP_603423.1| (NC_003454) Florfenicol resistance protein... 211 1e-53
ref|NP_657833.1| (NC_003995) hypothetical protein predicted... 210 2e-53
ref|NP_418953.1| (NC_002696) conserved hypothetical protein... 209 3e-53
ref|NP_345266.1| (NC_003028) conserved hypothetical protein... 207 1e-52
ref|NP_243372.1| (NC_002570) BH2506~unknown conserved prote... 206 4e-52
ref|NP_442572.1| (NC_000911) hypothetical protein [Synechoc... 204 1e-51
ref|NP_348352.1| (NC_003030) Predicted Fe-S-cluster redox e... 204 2e-51
ref|NP_358270.1| (NC_003098) Conserved hypothetical protein... 203 3e-51
ref|NP_230406.1| (NC_002505) conserved hypothetical protein... 202 4e-51
ref|NP_484399.1| (NC_003272) hypothetical protein [Nostoc s... 201 1e-50
ref|NP_565909.1| (NM_129523) expressed protein [Arabidopsis... 199 5e-50
ref|NP_660622.1| (NC_004061) hypothetical 43.1 kD protein i... 194 1e-48
ref|NP_266335.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococ... 192 4e-48
ref|NP_564755.1| (NM_104713) expressed protein [Arabidopsis... 192 5e-48
ref|NP_406387.1| (NC_003143) conserved hypothetical protein... 192 5e-48
ref|NP_284238.1| (NC_003116) conserved hypothetical protein... 192 5e-48
pir||T02275 hypothetical protein T13D8.12 - Arabidopsis tha... 192 5e-48
ref|NP_274327.1| (NC_003112) conserved hypothetical protein... 192 6e-48
ref|NP_294660.1| (NC_001263) conserved hypothetical protein... 190 2e-47
ref|NP_642342.1| (NC_003919) conserved hypothetical protein... 189 3e-47
ref|NP_637347.1| (NC_003902) conserved hypothetical protein... 189 4e-47
ref|NP_297749.1| (NC_002488) conserved hypothetical protein... 187 1e-46
ref|NP_240110.1| (NC_002528) hypothetical protein [Buchnera... 187 1e-46
dbj|BAB92792.1| (AP003855) florfenicol resistance protein-l... 187 2e-46
ref|NP_417012.1| (NC_000913) orf, hypothetical protein [Esc... 187 2e-46
ref|NP_252495.1| (NC_002516) conserved hypothetical protein... 187 2e-46
ref|NP_457057.1| (NC_003198) conserved hypothetical protein... 186 4e-46
ref|NP_461460.1| (NC_003197) putative Fe-S-cluster redox en... 186 4e-46
ref|NP_311406.1| (NC_002695) hypothetical protein [Escheric... 185 8e-46
dbj|BAB63695.1| (AP003277) contains EST AU095933(S11713)~un... 181 9e-45
ref|NP_662074.1| (NC_002932) florfenicol resistance protein... 181 1e-44
ref|NP_289070.1| (NC_002655) orf, hypothetical protein [Esc... 177 1e-43
ref|NP_519333.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 177 1e-43
ref|NP_246946.1| (NC_002663) unknown [Pasteurella multocida... 174 2e-42
ref|NP_438526.1| (NC_000907) conserved hypothetical protein... 173 3e-42
ref|NP_337458.1| (NC_002755) conserved hypothetical protein... 168 1e-40
ref|NP_601225.1| (NC_003450) COG0820:Predicted Fe-S-cluster... 164 2e-39
ref|NP_629775.1| (NC_003888) conserved hypothetical protein... 162 5e-39
ref|NP_218508.1| (NC_000919) conserved hypothetical protein... 160 2e-38
ref|NP_188597.1| (NM_112853) unknown protein [Arabidopsis t... 155 9e-37
dbj|BAB02548.1| (AP000417) gb|AAF41683.1~gene_id:MMB12.10~s... 147 2e-34
ref|NP_250530.1| (NC_002516) hypothetical protein [Pseudomo... 139 5e-32
emb|CAC04525.1| (AJ249217) florfenicol resistance protein [... 122 8e-27
ref|NP_217395.1| (NC_000962) hypothetical protein Rv2879c [... 115 1e-24
ref|NP_214053.1| (NC_000918) hypothetical protein [Aquifex ... 110 2e-23
ref|NP_078047.1| (NC_002162) conserved hypothetical [Ureapl... 94 3e-18
emb|CAB60749.1| (Y18639) hypothetical protein [Staphylococc... 91 3e-17
ref|NP_227951.1| (NC_000853) conserved hypothetical protein... 68 2e-10
ref|NP_217396.1| (NC_000962) hypothetical protein Rv2880c [... 60 4e-08
ref|NP_247067.1| (NC_000909) conserved hypothetical protein... 43 0.006
>ref|NP_208219.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O25970|YE28_HELPY Hypothetical protein HP1428
pir||D64698 conserved hypothetical protein HP1428 - Helicobacter pylori
(strain 26695)
gb|AAD08467.1| (AE000643) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 357
Score = 706 bits (1821), Expect = 0.0
Identities = 357/357 (100%), Positives = 357/357 (100%)
Query: 1 MKASIYDFTLKELSQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALR 60
MKASIYDFTLKELSQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALR
Sbjct: 1 MKASIYDFTLKELSQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALR 60
Query: 61 TIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQ 120
TIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQ
Sbjct: 61 TIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQ 120
Query: 121 IGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLD 180
IGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLD
Sbjct: 121 IGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLD 180
Query: 181 EVCKAIEIFNTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMP 240
EVCKAIEIFNTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMP
Sbjct: 181 EVCKAIEIFNTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMP 240
Query: 241 LNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLIL 300
LNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLIL
Sbjct: 241 LNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLIL 300
Query: 301 FNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357
FNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI
Sbjct: 301 FNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357
>ref|NP_224043.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZJI4|YE28_HELPJ Hypothetical protein JHP1325
pir||H71821 hypothetical protein jhp1325 - Helicobacter pylori (strain J99)
gb|AAD06899.1| (AE001555) putative [Helicobacter pylori J99]
Length = 357
Score = 681 bits (1757), Expect = 0.0
Identities = 342/357 (95%), Positives = 350/357 (97%)
Query: 1 MKASIYDFTLKELSQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALR 60
MKASIYDFTL ELSQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLE+EF LR
Sbjct: 1 MKASIYDFTLDELSQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLR 60
Query: 61 TIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQ 120
TIEI HVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKID ETNA+LE EKYTVCVSCQ
Sbjct: 61 TIEIAHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKYTVCVSCQ 120
Query: 121 IGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLD 180
IGCQVGCSFCFTQKGGFVR+LKASEIIQQALLIKE NNLP+EKALNIVFMGMGEPLNNLD
Sbjct: 121 IGCQVGCSFCFTQKGGFVRDLKASEIIQQALLIKEANNLPIEKALNIVFMGMGEPLNNLD 180
Query: 181 EVCKAIEIFNTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMP 240
EVCKA+EIFNTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMP
Sbjct: 181 EVCKAVEIFNTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMP 240
Query: 241 LNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLIL 300
LNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLIL
Sbjct: 241 LNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLIL 300
Query: 301 FNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357
FNPHEGSKFERPSLE+ARMFADFLN+KGLLCTIRESKALDIEAACGQLREKKL Q+I
Sbjct: 301 FNPHEGSKFERPSLESARMFADFLNAKGLLCTIRESKALDIEAACGQLREKKLQQKI 357
>ref|NP_282839.1| (NC_002163) hypothetical protein Cj1713 [Campylobacter jejuni]
pir||E81269 hypothetical protein Cj1713 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73699.1| (AL139079) hypothetical protein Cj1713 [Campylobacter jejuni]
Length = 356
Score = 385 bits (989), Expect = e-106
Identities = 201/354 (56%), Positives = 257/354 (71%), Gaps = 5/354 (1%)
Query: 4 SIYDFTLKELSQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIE 63
+I DF +EL + +KP FR KQ+Y W+Y KY +F DM ++ KD L R F ++
Sbjct: 6 NILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDM-SSLPKDLRLELARNFHFSPVK 64
Query: 64 ITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGC 123
+S DGS KYLF+ L D E+VLL MK++KIDAE I +YT+CVS Q+GC
Sbjct: 65 CVKNEQSKDGSIKYLFE-LIDGLRVESVLLPMKEEKIDAEGKRI-SHARYTICVSSQVGC 122
Query: 124 QVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVC 183
+ GCSFC T KGG RNL A EI+ Q L IK+ NN+P E+ +NIV+MGMGEPL+NL V
Sbjct: 123 KSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVS 182
Query: 184 KAIEIF--NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPL 241
KA++I N G+ ISP+R TISTSG+A +I L NLGV LAISLHAV+D+ R+ LMP+
Sbjct: 183 KAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPI 242
Query: 242 NKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILF 301
NK YNI +++ VR++P++QRKRVMFEYLLI +ND L+ AK+L+KLLNGIK+KVNLILF
Sbjct: 243 NKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302
Query: 302 NPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQ 355
NPHEGS ++RPSLENA F D L++KG+ CTIRESK LDI AACGQL+E+ Q
Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAKEQ 356
>ref|NP_540784.1| (NC_003317) FLORFENICOL RESISTANCE PROTEIN [Brucella melitensis]
gb|AAL53048.1| (AE009620) FLORFENICOL RESISTANCE PROTEIN [Brucella melitensis]
Length = 411
Score = 233 bits (595), Expect = 2e-60
Identities = 141/347 (40%), Positives = 202/347 (57%), Gaps = 29/347 (8%)
Query: 22 RAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKYLFKS 81
R QL+ WLY + + F DM+N SKD A L + F + E+ + S DG++K+LF+
Sbjct: 55 RISQLWHWLYVRGVSDFADMRN-ISKDLRAMLAQHFTIARPEVVEEQISQDGTRKWLFRF 113
Query: 82 LRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGFVRNL 141
+ + ++ E+ I E + T+C+S Q+GC + CSFC T VRNL
Sbjct: 114 PP----------RGAGRPVEIESVYIPEEGRGTLCISSQVGCTLTCSFCHTGTQKLVRNL 163
Query: 142 KASEIIQQALLIKE------DNNLPL--------EKALNIVFMGMGEPLNNLDEVCKAIE 187
+ EI+ Q L ++ D + P K NIV MGMGEPL N +EV KA+
Sbjct: 164 TSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMMGMGEPLYNFEEVKKALL 223
Query: 188 IFNTG--MQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKY 245
I + G + +S +RIT+STSGV +I G +GV LAISLHAV D+ R L+P+NKKY
Sbjct: 224 IASDGDGLSLSKRRITLSTSGVVPEI-YRTGDEIGVMLAISLHAVRDELRDILVPINKKY 282
Query: 246 NIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNPH 304
+ ++ R++P L KR+ FEY+++KD+NDSLD AK L+KLL GI +K+NLI FNP
Sbjct: 283 PLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKLLQGIPAKINLIPFNPW 342
Query: 305 EGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
G+ ++ E FAD++N+ G IR + DI AACGQL+ +
Sbjct: 343 PGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQLKSE 389
>ref|NP_213292.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||H70337 conserved hypothetical protein aq_416 - Aquifex aeolicus
gb|AAC06702.1| (AE000689) hypothetical protein [Aquifex aeolicus]
Length = 348
Score = 233 bits (594), Expect = 3e-60
Identities = 148/362 (40%), Positives = 213/362 (57%), Gaps = 29/362 (8%)
Query: 5 IYDFTLKEL----SQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALR 60
+ ++TL+EL ++L +RAKQ++ W+Y K+ T F+ M + K L+ FA
Sbjct: 4 VTNYTLEELKKRFTELGLEPYRAKQVFRWVYKKFVTDFEKM-TDLGKKHRELLKEHFAFH 62
Query: 61 TIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQ 120
+E E+ D + KYLFK+ +D H E VL+K ER+ YT+CVS Q
Sbjct: 63 PLEKLDRVEAPD-AVKYLFKT-KDGHILETVLIK--------------ERDHYTLCVSSQ 106
Query: 121 IGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLD 180
IGC VGC+FC T G RNL +EII Q L +++D L EK N+VFMGMGEPL N +
Sbjct: 107 IGCAVGCTFCATALDGLKRNLSTAEIIDQYLQVQQD--LGEEKIRNVVFMGMGEPLANYE 164
Query: 181 EVCKAIEIFNT--GMQISPKRITISTSGVADKIPILAGKNL--GVQLAISLHAVDDKTRS 236
V KA+EI + G+ +S +RITISTSG+ +I +A + V LA+SL+AV K R
Sbjct: 165 NVRKAVEIMVSPEGLDLSKRRITISTSGIVAQIKRMAQDPVMKEVNLAVSLNAVSQKKRE 224
Query: 237 SLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKS-- 294
LMPL K +E ++ ++ +PL + +R+ EY+LIK +NDS + A++L KL+ K
Sbjct: 225 ELMPLTKTNTLEELMEVLKNYPLPKYRRITLEYVLIKGVNDSPNDAERLAKLIGRHKKKF 284
Query: 295 KVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLS 354
KVNLI FNP +ERP+L + F L G+ +R SK +++ ACGQLR ++L
Sbjct: 285 KVNLIPFNPDPNLPYERPALTDIMKFQKVLWKYGISNFVRFSKGVEVFGACGQLRTQRLQ 344
Query: 355 QQ 356
Q
Sbjct: 345 LQ 346
>ref|NP_105248.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51034.1| (AP003004) hypothetical protein [Mesorhizobium loti]
Length = 410
Score = 230 bits (586), Expect = 2e-59
Identities = 145/376 (38%), Positives = 210/376 (55%), Gaps = 38/376 (10%)
Query: 2 KASIYDFTLKELSQLLKPS---------FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAY 52
K S+ T EL + L S RA+QL+ W+Y + + F M N SKD A
Sbjct: 24 KPSLIGLTRAELGEALVASGIVPERQAKMRAQQLWHWMYVRGVSDFAGMFN-ISKDLRAE 82
Query: 53 LEREFALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREK 112
L++ F + EI + S DG++K+LF+ + + ++ ET I E +
Sbjct: 83 LDKHFTVARPEIVEEQISSDGTRKWLFRFPP----------RGAGRPVEIETVYIPEEGR 132
Query: 113 YTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKE------DNNLPL----- 161
T+C+S Q+GC + CSFC T VRNL EI+ Q L ++ D + P
Sbjct: 133 GTLCISSQVGCTLTCSFCHTGTQKLVRNLTTEEILAQLLTARDRLGDFPDRDTPDGAIVP 192
Query: 162 ---EKALNIVFMGMGEPLNNLDEVCKAIEIFNTG--MQISPKRITISTSGVADKIPILAG 216
K NIV MGMGEPL N + V KA+ I + G + +S +RIT+STSGV +I G
Sbjct: 193 AEGRKVSNIVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEI-FRTG 251
Query: 217 KNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDL 275
+ +GV LAISLHA +D R L+P+NKKY ++ ++ R +P L KR+ FEY+++KD+
Sbjct: 252 EEIGVMLAISLHATNDDLRDLLVPINKKYPLKELIAACRAYPGLSNAKRITFEYVMLKDV 311
Query: 276 NDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRE 335
NDS++ AK L+KLL GI +K+NLI FNP G+ ++ E FAD++N+ G IR
Sbjct: 312 NDSIEDAKGLIKLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRT 371
Query: 336 SKALDIEAACGQLREK 351
+ DI AACGQL+ +
Sbjct: 372 PRGRDILAACGQLKSE 387
>ref|NP_387320.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC47793.1| (AL591793) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 411
Score = 227 bits (578), Expect = 2e-58
Identities = 137/347 (39%), Positives = 199/347 (56%), Gaps = 29/347 (8%)
Query: 22 RAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKYLFKS 81
R QL+ WLY + + F +M +N SKD L+ F + +I + S DG++K+L +
Sbjct: 54 RVSQLWHWLYVRGVSDFDEM-SNVSKDMREMLKEHFTIARPDIVEEQVSGDGTRKWLLRF 112
Query: 82 LRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGFVRNL 141
+ + ++ ET I E + T+C+S Q+GC + CSFC T VRNL
Sbjct: 113 PP----------RGAGRPVEIETVYIPEEGRGTLCISSQVGCTLTCSFCHTGTQKLVRNL 162
Query: 142 KASEIIQQALLIKEDNN------------LPLE--KALNIVFMGMGEPLNNLDEVCKAIE 187
A EI+ Q LL ++ +P E K NIV MGMGEPL N + V A+
Sbjct: 163 TAEEILSQLLLARDRLGDFPERDTPQGAIVPAEGRKITNIVMMGMGEPLYNFENVKTALL 222
Query: 188 IFNTG--MQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKY 245
I + G + +S +RIT+STSG+ +I G+ +GV LAISLHAV D R L+P+NKKY
Sbjct: 223 IASDGDGLSLSKRRITLSTSGIVPEI-YRTGEEIGVMLAISLHAVRDDLRDMLVPINKKY 281
Query: 246 NIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNPH 304
++ ++ R +P L +R+ FEY+++KD+NDSL+ AK+L+KLL GI +K+NLI FNP
Sbjct: 282 PLKQLMEACRAYPGLSNARRITFEYVMLKDVNDSLEDAKELVKLLKGIPAKINLIPFNPW 341
Query: 305 EGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
G+ ++ E FADF+N G IR + DI AACGQL+ +
Sbjct: 342 PGTNYQCSDWEQIEKFADFINQAGYASPIRTPRGRDILAACGQLKSE 388
>ref|NP_389457.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|O34617|YLON_BACSU Hypothetical protein yloN
pir||F69878 conserved hypothetical protein yloN - Bacillus subtilis
emb|CAA74265.1| (Y13937) YloN protein [Bacillus subtilis]
emb|CAB13448.1| (Z99112) similar to hypothetical proteins [Bacillus subtilis]
Length = 363
Score = 222 bits (566), Expect = 4e-57
Identities = 133/359 (37%), Positives = 204/359 (56%), Gaps = 26/359 (7%)
Query: 2 KASIYDFTLKELSQLLKPS----FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
+ SIY F L E+ Q L + FRA Q++ WLY K +SF+DM N SKD L F
Sbjct: 17 RPSIYSFELDEIKQWLTDNGEKPFRAAQIFEWLYEKRVSSFEDM-TNLSKDLREKLNTRF 75
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKY--TV 115
L T++ + S DG+ K+LF+ L D +T E VL+ R +Y +V
Sbjct: 76 VLTTLKTAVKQTSQDGTMKFLFE-LHDGYTIETVLM----------------RHEYGNSV 118
Query: 116 CVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEP 175
CV+ Q+GC++GC+FC + GG RNL+A EI+ Q + +++ + E+ ++V MG+GEP
Sbjct: 119 CVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDETDERVSSVVIMGIGEP 178
Query: 176 LNNLDEVCKAIEIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDK 233
+N +E+ ++I N G+ I + IT+STSG+ KI A + + + AISLHA + +
Sbjct: 179 FDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYEFADQQMQINFAISLHAPNTE 238
Query: 234 TRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIK 293
RS LMP+N+ Y + ++ V+ + + +R+ FEY L +ND ++ A++L LL G+K
Sbjct: 239 IRSRLMPINRAYKLPDLMEAVKYYINKTGRRISFEYGLFGGVNDQVEHAEELADLLEGVK 298
Query: 294 SKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKK 352
VNLI N + R + F L S+G+ TIR + DI+AACGQLR K+
Sbjct: 299 CHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLRAKE 357
>ref|NP_623116.1| (NC_003869) predicted Fe-S-cluster redox enzyme [Thermoanaerobacter
tengcongensis]
gb|AAM24720.1| (AE013107) predicted Fe-S-cluster redox enzyme [Thermoanaerobacter
tengcongensis]
Length = 342
Score = 221 bits (563), Expect = 1e-56
Identities = 139/359 (38%), Positives = 198/359 (54%), Gaps = 27/359 (7%)
Query: 4 SIYDFTLKELSQLL----KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFAL 59
++ D TL+E+ + + FRAKQLY W+Y K T F D+ + SK+ A L+ +
Sbjct: 3 NLKDMTLEEMEEFFVNLGESKFRAKQLYKWIYDKRVTDF-DLMTDISKNLRAKLKEIAYI 61
Query: 60 RTIEITHVRES-VDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVS 118
++I R S +D + KYLF L D + E V +K K T CVS
Sbjct: 62 SELKIIERRVSQIDDTVKYLFL-LEDKNIIEGVAIKYKFGN--------------TACVS 106
Query: 119 CQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNN 178
Q+GC + C FC + GG VR+LKASE++ Q + I D K NIV MG GEP +N
Sbjct: 107 TQVGCNMKCKFCASAIGGKVRDLKASEMVDQVMAIDSDYG----KISNIVLMGSGEPFDN 162
Query: 179 LDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRS 236
DEV K I+I N G++I + ITIST G+ KI A + L V L+ISLHA +++ R+
Sbjct: 163 YDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHAPNNELRN 222
Query: 237 SLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKV 296
LMP+N+ Y +E ++ R + + +R+ FEY LI +ND + A +L+ LL G+ V
Sbjct: 223 ELMPINRAYPLEELMKACRYYIEKTNRRITFEYALIDGVNDKKEHAYQLVDLLKGMLCHV 282
Query: 297 NLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQ 355
NLI N + F + + E MF + + G+ CT+R DIEAACGQLR K L +
Sbjct: 283 NLIPINYVKEIGFRKSNNEKVMMFKKIIENAGITCTVRRELGSDIEAACGQLRRKYLKE 341
>ref|NP_533338.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL43654.1| (AE009214) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 390
Score = 221 bits (562), Expect = 1e-56
Identities = 137/375 (36%), Positives = 205/375 (54%), Gaps = 37/375 (9%)
Query: 2 KASIYDFTLKELSQLL--------KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
K S+ T +E+ + L + R QL+ WLY + + F +M N +K+ L
Sbjct: 4 KPSLIGLTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNM-TNVAKELREKL 62
Query: 54 EREFALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKY 113
+ F + EI + S DG++K+L + + + ++ ET I E +
Sbjct: 63 KAAFTIARPEIVEEQISNDGTRKWLMRFPP----------RGAGRPVEIETVYIPEEGRG 112
Query: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKE------DNNLPL------ 161
T+C+S Q+GC + CSFC T VRNL A EI+ Q LL ++ D + P+
Sbjct: 113 TLCISSQVGCSLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPS 172
Query: 162 --EKALNIVFMGMGEPLNNLDEVCKAIEIFNTG--MQISPKRITISTSGVADKIPILAGK 217
K NIV MGMGEPL N + V A+ I G + +S +R+T+STSGV +I G
Sbjct: 173 EGRKVSNIVMMGMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEI-FRTGD 231
Query: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
+GV LAISLHAV D R L+P+NKKY ++ ++ R +P + +R+ FEY+++KD+N
Sbjct: 232 EIGVMLAISLHAVRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVN 291
Query: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRES 336
DSL+ AK L++LL G+ +K+NLI FNP G+ ++ FADF+N G IR
Sbjct: 292 DSLEDAKMLVQLLKGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTP 351
Query: 337 KALDIEAACGQLREK 351
+ DI AACGQL+ +
Sbjct: 352 RGRDILAACGQLKSE 366
>ref|NP_355610.1| (NC_003062) AGR_C_4846p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK88395.1| (AE008180) AGR_C_4846p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 446
Score = 221 bits (562), Expect = 1e-56
Identities = 137/375 (36%), Positives = 205/375 (54%), Gaps = 37/375 (9%)
Query: 2 KASIYDFTLKELSQLL--------KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
K S+ T +E+ + L + R QL+ WLY + + F +M N +K+ L
Sbjct: 60 KPSLIGLTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNM-TNVAKELREKL 118
Query: 54 EREFALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKY 113
+ F + EI + S DG++K+L + + + ++ ET I E +
Sbjct: 119 KAAFTIARPEIVEEQISNDGTRKWLMRFPP----------RGAGRPVEIETVYIPEEGRG 168
Query: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKE------DNNLPL------ 161
T+C+S Q+GC + CSFC T VRNL A EI+ Q LL ++ D + P+
Sbjct: 169 TLCISSQVGCSLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPS 228
Query: 162 --EKALNIVFMGMGEPLNNLDEVCKAIEIFNTG--MQISPKRITISTSGVADKIPILAGK 217
K NIV MGMGEPL N + V A+ I G + +S +R+T+STSGV +I G
Sbjct: 229 EGRKVSNIVMMGMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEI-FRTGD 287
Query: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
+GV LAISLHAV D R L+P+NKKY ++ ++ R +P + +R+ FEY+++KD+N
Sbjct: 288 EIGVMLAISLHAVRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVN 347
Query: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRES 336
DSL+ AK L++LL G+ +K+NLI FNP G+ ++ FADF+N G IR
Sbjct: 348 DSLEDAKMLVQLLKGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTP 407
Query: 337 KALDIEAACGQLREK 351
+ DI AACGQL+ +
Sbjct: 408 RGRDILAACGQLKSE 422
>ref|NP_371742.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374334.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB42313.1| (AP003133) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57380.1| (AP003361) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 364
Score = 220 bits (560), Expect = 2e-56
Identities = 130/359 (36%), Positives = 197/359 (54%), Gaps = 26/359 (7%)
Query: 2 KASIYDFTLKELSQLL----KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K SIY E+ L + FRAKQ++ WLY K S +M N SKD L+ F
Sbjct: 18 KQSIYSLRFDEMQNWLVEQGQQKFRAKQIFEWLYQKRVDSIDEM-TNLSKDLRQLLKDNF 76
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKY--TV 115
+ T+ +ES DG+ K+LF+ L+D +T E VL+ R Y +V
Sbjct: 77 TVTTLTTVVKQESKDGTIKFLFE-LQDGYTIETVLM----------------RHDYGNSV 119
Query: 116 CVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEP 175
CV+ Q+GC++GC+FC + GG RNL+A EI+ Q L +++ + E+ IV MG+GEP
Sbjct: 120 CVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDATEERVSQIVIMGIGEP 179
Query: 176 LNNLDEVCKAIEIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDK 233
N DE+ + I N + I + IT+STSG+ +I A +++ + A+SLHA D+
Sbjct: 180 FENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSLHAAKDE 239
Query: 234 TRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIK 293
RS LMP+N+ YN+E ++ ++ + + +RV FEY L +ND L+ A++L L+ G+
Sbjct: 240 VRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYGLFGGVNDQLEHARELAHLIKGLN 299
Query: 294 SKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKK 352
VNLI N + + + + F L G+ TIR + DI+AACGQLR K+
Sbjct: 300 CHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACGQLRAKE 358
>ref|NP_229514.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||G72218 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD36781.1|AE001811_1 (AE001811) conserved hypothetical protein [Thermotoga maritima]
Length = 343
Score = 220 bits (560), Expect = 2e-56
Identities = 140/355 (39%), Positives = 202/355 (56%), Gaps = 25/355 (7%)
Query: 6 YDFTLKELSQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEIT 65
Y+ + E++ L +RA Q+ W++ K +F +M N SK A L+ F++ +++
Sbjct: 9 YEELVTEITNLGLERYRADQILDWVFDKKVNNFDEM-TNLSKKHRALLKEHFSISFLKLL 67
Query: 66 HVRES-VDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQ 124
+ S +DG+ K+L++ L D +T E+V+L D+ T C+S Q+GC
Sbjct: 68 DKKVSRIDGTTKFLWE-LEDGNTIESVMLFHPDR--------------ITACISTQVGCP 112
Query: 125 VGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCK 184
V C FC T GFVRNL EI+ Q L ++++ +K N+V+MGMGEPL N + K
Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQILSMEKEEK---KKIGNVVYMGMGEPLLNYENTIK 169
Query: 185 AIEIFNTGMQ--ISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLN 242
+I I N I +RITIST G+ D+I LA + L V+LA+SLHA + R L+PLN
Sbjct: 170 SIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLN 229
Query: 243 KKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFN 302
KKY+IE +LN V+ + + RV EY+LI+ +ND + AKKL ++L +K VNLI N
Sbjct: 230 KKYSIEEILNAVKIYQRKTGNRVTIEYVLIRGINDEISDAKKLAEILRNMKVFVNLIPVN 289
Query: 303 PH-EGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQ 356
P EG RPS E F L G+ IR K DIEAACGQLR K++ +
Sbjct: 290 PTVEG--LRRPSRERLLTFKRILLENGIEAEIRREKGTDIEAACGQLRLKRIKSR 342
>ref|NP_645918.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB94966.1| (AP004826) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 364
Score = 219 bits (557), Expect = 5e-56
Identities = 129/359 (35%), Positives = 197/359 (53%), Gaps = 26/359 (7%)
Query: 2 KASIYDFTLKELSQLL----KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K SIY E+ L + FRAKQ++ WLY K S +M N SKD L+ F
Sbjct: 18 KQSIYSLRFDEMQNWLVEQGQQKFRAKQIFEWLYQKRVDSIDEM-TNLSKDLRQLLKDNF 76
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKY--TV 115
+ T+ +ES DG+ K+L++ L+D +T E VL+ R Y +V
Sbjct: 77 TVTTLTTVVKQESKDGTIKFLYE-LQDGYTIETVLM----------------RHDYGNSV 119
Query: 116 CVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEP 175
CV+ Q+GC++GC+FC + GG RNL+A EI+ Q L +++ + E+ IV MG+GEP
Sbjct: 120 CVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDATEERVSQIVIMGIGEP 179
Query: 176 LNNLDEVCKAIEIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDK 233
N DE+ + I N + I + IT+STSG+ +I A +++ + A+SLHA D+
Sbjct: 180 FENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSLHAAKDE 239
Query: 234 TRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIK 293
RS LMP+N+ YN+E ++ ++ + + +RV FEY L +ND L+ A++L L+ G+
Sbjct: 240 VRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYGLFGGVNDQLEHARELAHLIKGLN 299
Query: 294 SKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKK 352
VNLI N + + + + F L G+ TIR + DI+AACGQLR K+
Sbjct: 300 CHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACGQLRAKE 358
>ref|NP_562656.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81446.1| (AP003191) conserved hypothetical protein [Clostridium perfringens]
Length = 347
Score = 218 bits (555), Expect = 8e-56
Identities = 134/360 (37%), Positives = 204/360 (56%), Gaps = 26/360 (7%)
Query: 4 SIYDFTLKELSQLLKPS----FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFAL 59
+I DFTL+EL + +K + FRAKQ++ W+Y K +F++M+N SK I L F +
Sbjct: 3 NILDFTLEELKEWMKENGESAFRAKQIFDWIYKKEVFNFEEMKN-ISKALIGKLSENFYI 61
Query: 60 RTIE-ITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVS 118
E I ++ S DG++K L L D + E V+++ K ++CVS
Sbjct: 62 GIPEVIDYLSSSEDGTRKILL-GLGDGNIIECVIMRYKYGN--------------SICVS 106
Query: 119 CQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNN 178
QIGC++GC FC + G VRNL A EI+ + L+ L E+ NIV MG GEPL+N
Sbjct: 107 TQIGCRMGCKFCASTLEGMVRNLTAGEILSEVLI---GQKLLGERISNIVLMGSGEPLDN 163
Query: 179 LDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRS 236
D V K +E+ N G+ I + IT+ST G+ KI +A K + V LAISLHAV D+ R
Sbjct: 164 YDNVMKFLELVNADYGLNIGQRHITLSTCGLVPKIREMADKEMQVTLAISLHAVSDEKRK 223
Query: 237 SLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKV 296
++MP+ KY+I +L+ + + +R+ FEY L+ +ND+ + AK L +LL G+ V
Sbjct: 224 TIMPIANKYSISEILDACNYYIEKTGRRITFEYSLVSGVNDTKEDAKSLGRLLKGMLCHV 283
Query: 297 NLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQ 356
NLI N + ++F++ + ++ F + L + G+ T+R DI AACGQLR + +
Sbjct: 284 NLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQLRRSYIKSK 343
>ref|NP_469827.1| (NC_003212) similar to conserved hypothetical proteins, highly
similar to B. subtilis YloN protein [Listeria innocua]
emb|CAC95716.1| (AL596165) similar to conserved hypothetical proteins, highly
similar to B. subtilis YloN protein [Listeria innocua]
Length = 367
Score = 213 bits (543), Expect = 2e-54
Identities = 132/365 (36%), Positives = 208/365 (56%), Gaps = 27/365 (7%)
Query: 2 KASIYDFTLKELSQLLKP----SFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K+SIY T +L++ L+ FRA Q++ WLY K +F++M +N K+ I L F
Sbjct: 3 KSSIYGLTWTKLTEWLEAHGQKKFRATQVWDWLYRKRVKTFEEM-SNVPKETIELLTANF 61
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCV 117
+ T+E V+ES DG+ KYLFK L D + E V++K + +VCV
Sbjct: 62 VMNTLEEQVVQESTDGTTKYLFK-LSDGNLIETVMMK--------------QEYGLSVCV 106
Query: 118 SCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKE--DNNLPLEKALNIVFMGMGEP 175
+ Q+GC +GC+FC + R+L A EI++Q + ++ D E+ ++V MG+GEP
Sbjct: 107 TTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEP 166
Query: 176 LNNLDEVCKAIEIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDK 233
+N D V + + N G+ I + IT+STSG+A +I A ++ V LAISLHA +++
Sbjct: 167 FDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNE 226
Query: 234 TRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIK 293
R+S+M +NK Y+IE ++ + + + +R+ FEY+++K +ND A +L LL +
Sbjct: 227 LRTSIMRINKTYSIEKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHR 286
Query: 294 --SKVNLILFNP-HEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLRE 350
+ VNLI +NP E +ER + E+ F D L G+ C IR DI+AACGQLR
Sbjct: 287 HLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRS 346
Query: 351 KKLSQ 355
K++ +
Sbjct: 347 KQIKR 351
>ref|NP_464010.1| (NC_003210) similar to conserved hypothetical proteins, highly
similar to B. subtilis YloN protein [Listeria
monocytogenes EGD-e]
emb|CAC98561.1| (AL591975) similar to conserved hypothetical proteins, highly
similar to B. subtilis YloN protein [Listeria
monocytogenes]
Length = 367
Score = 213 bits (542), Expect = 3e-54
Identities = 132/365 (36%), Positives = 207/365 (56%), Gaps = 27/365 (7%)
Query: 2 KASIYDFTLKELSQLLKP----SFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K+SIY T L++ L+ FRA Q++ WLY K +F++M +N K+ I L F
Sbjct: 3 KSSIYGLTWTNLTEWLEAHGQKKFRATQVWDWLYRKRVKTFEEM-SNVPKETIELLTANF 61
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCV 117
+ T+E V+ES DG+ KYLFK L D + E V++K + +VCV
Sbjct: 62 VMNTLEEQVVQESTDGTTKYLFK-LSDGNLIETVMMK--------------QEYGLSVCV 106
Query: 118 SCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKE--DNNLPLEKALNIVFMGMGEP 175
+ Q+GC +GC+FC + R+L A EI++Q + ++ D E+ ++V MG+GEP
Sbjct: 107 TTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEP 166
Query: 176 LNNLDEVCKAIEIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDK 233
+N D V + + N G+ I + IT+STSG+A +I A ++ V LAISLHA +++
Sbjct: 167 FDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNE 226
Query: 234 TRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIK 293
R+S+M +NK Y+IE ++ + + + +R+ FEY+++K +ND A +L LL +
Sbjct: 227 LRTSIMRINKTYSIEKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHR 286
Query: 294 --SKVNLILFNP-HEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLRE 350
+ VNLI +NP E +ER + E+ F D L G+ C IR DI+AACGQLR
Sbjct: 287 HLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRS 346
Query: 351 KKLSQ 355
K++ +
Sbjct: 347 KQIKR 351
>ref|NP_269606.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK34327.1| (AE006586) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
Length = 359
Score = 212 bits (540), Expect = 5e-54
Identities = 130/366 (35%), Positives = 205/366 (55%), Gaps = 27/366 (7%)
Query: 1 MKASIYDFTLKELSQLL----KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLERE 56
MK SIY T EL + FRA Q++ WLY K SF++M N SKDF++ L
Sbjct: 1 MKPSIYSLTRDELIAWAVERGQKQFRATQIWDWLYKKRVQSFEEM-TNISKDFVSILNDS 59
Query: 57 FALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVC 116
F + ++ V+ES DG+ KYLF+ L D E VL++ + ++VC
Sbjct: 60 FCVNPLKQRVVQESADGTVKYLFE-LPDGMLIETVLMR--------------QHYGHSVC 104
Query: 117 VSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKE--DNNLPLEKALNIVFMGMGE 174
V+ Q+GC +GC+FC + R+L + EI Q +L+++ D+ E+ ++V MG+GE
Sbjct: 105 VTTQVGCNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDDRKQGERVSHVVVMGIGE 164
Query: 175 PLNNLDEVCKAIEIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDD 232
P +N V + + N G+ I + IT+STSG+A KI A + + V LA+SLHA ++
Sbjct: 165 PFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNN 224
Query: 233 KTRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGI 292
RSS+M +N+ + +E + + + + + +RV FEY+++ ++NDS+ A++L L I
Sbjct: 225 DLRSSIMRVNRSFPLEKLFSAIEYYIEKTNRRVTFEYIMLNEVNDSIKQAQELADLTKTI 284
Query: 293 K--SKVNLILFNP-HEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
+ S VNLI +NP E ++ R E F D L G+ C +R+ DI+AACGQLR
Sbjct: 285 RKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAACGQLR 344
Query: 350 EKKLSQ 355
K + +
Sbjct: 345 SKTMKK 350
>ref|NP_607618.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAL98117.1| (AE010069) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 359
Score = 211 bits (538), Expect = 8e-54
Identities = 130/366 (35%), Positives = 204/366 (55%), Gaps = 27/366 (7%)
Query: 1 MKASIYDFTLKELSQLL----KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLERE 56
MK SIY T EL + FRA Q++ WLY K SF++M N SKDF+ L
Sbjct: 1 MKPSIYSLTRDELIAWAVERGQKQFRATQIWDWLYKKRVQSFEEM-TNISKDFVPILNDS 59
Query: 57 FALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVC 116
F + ++ V+ES DG+ KYLF+ L D E VL++ + ++VC
Sbjct: 60 FCVNPLKQRVVQESADGTVKYLFE-LPDGMLIETVLMR--------------QHYGHSVC 104
Query: 117 VSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKE--DNNLPLEKALNIVFMGMGE 174
V+ Q+GC +GC+FC + R+L + EI Q +L+++ D+ E+ ++V MG+GE
Sbjct: 105 VTTQVGCNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDDRKQGERVSHVVVMGIGE 164
Query: 175 PLNNLDEVCKAIEIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDD 232
P +N V + + N G+ I + IT+STSG+A KI A + + V LA+SLHA ++
Sbjct: 165 PFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNN 224
Query: 233 KTRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGI 292
RSS+M +N+ + +E + + + + + +RV FEY+++ ++NDS+ A++L L I
Sbjct: 225 DLRSSIMRVNRSFPLEKLFSAIEYYIEKTNRRVTFEYIMLNEVNDSIKQAQELADLTKTI 284
Query: 293 K--SKVNLILFNP-HEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
+ S VNLI +NP E ++ R E F D L G+ C +R+ DI+AACGQLR
Sbjct: 285 RKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAACGQLR 344
Query: 350 EKKLSQ 355
K + +
Sbjct: 345 SKTMKK 350
>ref|NP_603423.1| (NC_003454) Florfenicol resistance protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gb|AAL94722.1| (AE010564) Florfenicol resistance protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 358
Score = 211 bits (536), Expect = 1e-53
Identities = 128/357 (35%), Positives = 202/357 (55%), Gaps = 16/357 (4%)
Query: 2 KASIYDFTLKELSQLLKP----SFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K +I + T +EL++LL F K++++WL+ K SF +M N KD E+ +
Sbjct: 5 KINILNLTQEELTELLVSLGLKKFYGKEVFIWLHKKITRSFDEMTNLSLKDREILKEKTY 64
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCV 117
+ + +D ++K+LF+ L D T E VLL+ KD K N T+CV
Sbjct: 65 IPFFNLLKYQVSKIDKTEKFLFE-LEDGGTIETVLLRHKDSKNKEIRN--------TLCV 115
Query: 118 SCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLN 177
S Q+GC V CSFC T + G++RNL SEI+ Q ++ E N+VFMGMGEPL
Sbjct: 116 SSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRLRKKGENLNNLVFMGMGEPLL 175
Query: 178 NLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTR 235
N+D + KA+ I + G+ IS ++ITISTSGV I + + ++LAISLH+ ++ R
Sbjct: 176 NIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKR 235
Query: 236 SSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSK 295
++P+NK + +E + + ++ + ++R+ FEY+LI + N S A L ++
Sbjct: 236 DKIIPINKNFPLEDLSAVLIEYQKQTKRRITFEYILIDNFNISETDANALADFIHQFDHV 295
Query: 296 VNLILFNPHEGSKFERPSLENARMFADFL-NSKGLLCTIRESKALDIEAACGQLREK 351
VNLI +N EG++ RPS++ F +L N + + T+R+ K DI+ ACGQLR++
Sbjct: 296 VNLIPYNEVEGAEHTRPSVKKINKFYIYLKNVRKVNVTLRQEKGSDIDGACGQLRQR 352
>ref|NP_657833.1| (NC_003995) hypothetical protein predicted by GeneMark [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 362
Score = 210 bits (535), Expect = 2e-53
Identities = 127/363 (34%), Positives = 199/363 (53%), Gaps = 26/363 (7%)
Query: 2 KASIYDFTLKELSQLLK----PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K SIY L E+ LK P FRA Q++ WLY K +++DM +N SK L F
Sbjct: 16 KPSIYSLQLHEMQDWLKEQGEPKFRAGQIFDWLYKKRVKNYEDM-SNLSKGLREKLSNSF 74
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKY--TV 115
+ T+ + S DG+ K+LF+ L D ++ E VL+ R +Y ++
Sbjct: 75 DITTLNTLVKQTSSDGTIKFLFQ-LYDGYSIETVLM----------------RHEYGNSI 117
Query: 116 CVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEP 175
CV+ Q+GC++GC+FC + GG RNL+A EI+ Q + ++ + E+ ++V MG+GEP
Sbjct: 118 CVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDESEERVSSLVVMGIGEP 177
Query: 176 LNNLDEVCKAIEIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDK 233
+N D + + I N G+ I + +T+STSG+ KI A ++L + AISLHA + +
Sbjct: 178 FDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISLHAPNSE 237
Query: 234 TRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIK 293
RS LMP+N+ Y + ++ ++ + +R+ FEY L ND ++ A++L LL G+K
Sbjct: 238 LRSKLMPINRAYKLPDLMEAIKYYVNRTGRRITFEYGLFGGENDQVEHAEELAALLKGVK 297
Query: 294 SKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKL 353
VNLI N + R E +F L +G+ TIR + DI+AACGQLR K+
Sbjct: 298 CHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACGQLRAKER 357
Query: 354 SQQ 356
++
Sbjct: 358 KEE 360
>ref|NP_418953.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK22121.1| (AE005687) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 404
Score = 209 bits (533), Expect = 3e-53
Identities = 137/342 (40%), Positives = 191/342 (55%), Gaps = 24/342 (7%)
Query: 18 KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKY 77
K RA Q++ W++ + T F DM ++ +K+ A L F + EI + S DG++K+
Sbjct: 49 KAKMRATQIFRWMHHRGVTDFADM-SDVAKETRARLAEAFTIARPEIVERQVSKDGTRKW 107
Query: 78 LFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGF 137
L + A ++++ I A +CVS Q+GC + CSFC T
Sbjct: 108 LIRM--------APGIEVESVYIPGVGRA------GALCVSSQVGCTLNCSFCHTGTQPL 153
Query: 138 VRNLKASEIIQQALLIKED-NNLPLEKA----LNIVFMGMGEPLNNLDEVCKAIEIF--N 190
VRNL A+EI+ Q + K+D P +K NIVFMGMGEPL NL +V AIEI N
Sbjct: 154 VRNLTAAEIVAQVQVAKDDLAEWPSDKEDRQLSNIVFMGMGEPLYNLGQVADAIEIISDN 213
Query: 191 TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECV 250
G+ IS +RIT+STSGV + L G LAISLHA +D R L+PLNKKY I +
Sbjct: 214 EGIAISRRRITVSTSGVVPMLEKL-GSTTQAMLAISLHATNDPLRDVLVPLNKKYPIAEL 272
Query: 251 LNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKF 309
+ +R +P L +RV FEY+++K +NDS + A+ L+KL+ GI +K+NLI FNP GS +
Sbjct: 273 MAGIRAYPGLSNARRVTFEYVMLKGVNDSPEEARALVKLIKGIPAKINLIPFNPWPGSDY 332
Query: 310 ERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
+ FA LN G IR + DI AACGQL+ +
Sbjct: 333 QCSDWATIEAFAAILNKAGYSSPIRTPRGRDILAACGQLKSE 374
>ref|NP_345266.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
gb|AAK74906.1| (AE007384) conserved hypothetical protein [Streptococcus pneumoniae
TIGR4]
Length = 361
Score = 207 bits (528), Expect = 1e-52
Identities = 131/366 (35%), Positives = 203/366 (54%), Gaps = 27/366 (7%)
Query: 1 MKASIYDFTLKELSQLL----KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLERE 56
MK SI+ + + + + + FRA Q++ WLY K SF++M N SKD IA L +
Sbjct: 1 MKPSIHSLVHQTMQEWVLEQGEKKFRADQIWEWLYRKRVQSFEEM-TNLSKDLIAKLNDQ 59
Query: 57 FALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVC 116
F + ++ V+ES DG+ KYLF+ L D E VL++ + +VC
Sbjct: 60 FVVNPLKQRIVQESADGTVKYLFE-LPDGMLIETVLMR--------------QHYGLSVC 104
Query: 117 VSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKE--DNNLPLEKALNIVFMGMGE 174
V+ Q+GC +GC+FC + R+L EI+ Q +L+++ D E+ +IV MG+GE
Sbjct: 105 VTTQVGCNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERISHIVVMGIGE 164
Query: 175 PLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDD 232
P +N + V N GM I + IT+STSG+A KI A + + V LA+SLHA ++
Sbjct: 165 PFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHAPNN 224
Query: 233 KTRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGI 292
+ RSS+M +N+ + IE + + + +RV FEY+++ ++ND ++ A +L +LL I
Sbjct: 225 ELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELTELLKNI 284
Query: 293 K--SKVNLILFNP-HEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
K S VNLI +NP E ++ R E F D L KG+ C +R+ DI+AACGQLR
Sbjct: 285 KKLSYVNLIPYNPVSEHDQYSRSPKECVLAFYDTLKKKGVNCVVRQEHGTDIDAACGQLR 344
Query: 350 EKKLSQ 355
+ +
Sbjct: 345 SNTMKR 350
>ref|NP_243372.1| (NC_002570) BH2506~unknown conserved protein [Bacillus halodurans]
dbj|BAB06225.1| (AP001515) BH2506~unknown conserved protein [Bacillus halodurans]
Length = 362
Score = 206 bits (523), Expect = 4e-52
Identities = 130/361 (36%), Positives = 198/361 (54%), Gaps = 26/361 (7%)
Query: 4 SIYDFTLKELSQLLK----PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFAL 59
SIY +EL LK P FRA Q++ WLY K F++M N SKD A LE+ F L
Sbjct: 18 SIYTLQFEELEMWLKEQGEPKFRATQIFEWLYEKRVKQFQEM-TNLSKDLRAKLEKHFNL 76
Query: 60 RTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKY--TVCV 117
T++ ++S DG+ K+LF+ L D ++ E V++ R Y +VCV
Sbjct: 77 TTLKTVTKQQSSDGTIKFLFE-LHDGYSIETVVM----------------RHNYGNSVCV 119
Query: 118 SCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLN 177
+ Q+GC++GC+FC + GG RNL+A EI+ Q + + + E+ +IV MG+GEP +
Sbjct: 120 TTQVGCRLGCTFCASTLGGLKRNLEAGEIVAQVVEAQRAMDEQGERVGSIVVMGIGEPFD 179
Query: 178 NLDEVCKAIEIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTR 235
N + ++ N G+ I + IT+STSGV KI A + L + AISLHA + + R
Sbjct: 180 NYQALMPFLKTVNHDKGLNIGARHITVSTSGVVPKIYQFADEGLQINFAISLHAPNTELR 239
Query: 236 SSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSK 295
S LMP+N+ + + +++ +R + + +RV FEY L ND ++ A++L L+ IK
Sbjct: 240 SKLMPVNRAWPLPKLMDAIRYYIDKTGRRVTFEYGLFGGENDQVEHAEELADLIKDIKCH 299
Query: 296 VNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQ 355
VNLI N + R + F L +G+ TIR + DI+AACGQLR K+ +
Sbjct: 300 VNLIPVNYVPERDYVRTPRDQIFAFERTLKERGVNVTIRREQGHDIDAACGQLRAKERKE 359
Query: 356 Q 356
+
Sbjct: 360 E 360
>ref|NP_442572.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|Q55880|Y098_SYNY3 Hypothetical protein sll0098
pir||S76698 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA10642.1| (D64004) ORF_ID:sll0098~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 350
Score = 204 bits (520), Expect = 1e-51
Identities = 126/357 (35%), Positives = 199/357 (55%), Gaps = 30/357 (8%)
Query: 3 ASIYDFTLKELSQLLK----PSFRAKQLYLWLY---AKYKTSFKDMQNNFSKDFIAYLER 55
A + +L EL+ ++ P++R KQ++ WLY A+ T+ D+ + + + Y
Sbjct: 6 APLLSLSLPELTDWVQTTGQPAYRGKQIHQWLYQKGARSLTAMTDLPKVWREKNVHY--- 62
Query: 56 EFALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTV 115
+ I H + D ++KYL L++ D I ET I ++ TV
Sbjct: 63 --PIGRSVIDHCAVAPDHTRKYL--------------LRLADGLI-IETVGIPSSKRLTV 105
Query: 116 CVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEP 175
CVS Q+GC + C+FC T KGGF+RNL++ EI+ Q L ++E+ + E+ N+VFMGMGEP
Sbjct: 106 CVSSQVGCAMDCNFCATGKGGFIRNLESHEIVDQVLTVQEEFH---ERVSNVVFMGMGEP 162
Query: 176 LNNLDEVCKAIEIFNTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTR 235
L NL +V KA+E N + I + +TIST G+ KI LA ++L V A+SLHA + R
Sbjct: 163 LLNLPQVVKAVECLNQVVGIGQRALTISTVGLPGKIRQLADRHLQVTFAVSLHAPNQTLR 222
Query: 236 SSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSK 295
SL+P + Y +E +L + R + +RV FEY+L+ +ND A++L + L G ++
Sbjct: 223 QSLIPSARHYPLEQLLADCRAYVETTGRRVTFEYVLLAGVNDQPVHAEELAQKLRGFQTH 282
Query: 296 VNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKK 352
VNLI +NP ++RP+ FA L+ + ++R S+ + +AACGQLR +
Sbjct: 283 VNLIPYNPISEVDYQRPTEAQINQFAQVLSDHRIAVSVRYSRGVQADAACGQLRASR 339
>ref|NP_348352.1| (NC_003030) Predicted Fe-S-cluster redox enzyme, YLON B.subtilis
ortholog [Clostridium acetobutylicum]
gb|AAK79692.1|AE007682_2 (AE007682) Predicted Fe-S-cluster redox enzyme, YLON B.subtilis
ortholog [Clostridium acetobutylicum]
Length = 345
Score = 204 bits (518), Expect = 2e-51
Identities = 130/359 (36%), Positives = 196/359 (54%), Gaps = 27/359 (7%)
Query: 4 SIYDFTLKELSQLL----KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFAL 59
+I D+ EL Q + + +FRAKQ + W+Y FKDM+N + LE+ F +
Sbjct: 3 NILDYNEAELKQWMDKNGEKTFRAKQFFDWIY-NGTFDFKDMKN-LPQSTRERLEKNFYI 60
Query: 60 RTIEITHVRESVDGSK-KYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVS 118
+ S G K+LF+ D + E V++K ++C+S
Sbjct: 61 GMPSVVKRLNSKKGDTVKFLFR-YNDGNIIECVVMKYDYGN--------------SICIS 105
Query: 119 CQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNN 178
Q+GC++GCSFC + GG VR+L + EI+ Q L +++ E+ NIV MG GEPL+N
Sbjct: 106 TQVGCRMGCSFCASTIGGRVRDLTSGEILAQILKAQKEIG---ERISNIVLMGSGEPLDN 162
Query: 179 LDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRS 236
D V K I I N+ G+ I + IT+ST G+ +I L +NL + LAISLHA DD+TR
Sbjct: 163 YDNVIKFIRIVNSEKGLNIGQRHITLSTCGIVPRIYDLMKENLQITLAISLHASDDETRK 222
Query: 237 SLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKV 296
+MP+ +Y+I +++ +K+ +R+ FEY L+KD+ND + AKKL +LL+G+ V
Sbjct: 223 KIMPIANRYSISEIIDCCKKYSDFTGRRITFEYSLVKDVNDDKESAKKLGELLSGMLCHV 282
Query: 297 NLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQ 355
NLI N + +E+P + F D L + TIR+ DI AACGQLR + +
Sbjct: 283 NLIPVNTVNETSYEKPESSKIKKFCDTLLKYKIESTIRKEMGADINAACGQLRRNYIEE 341
>ref|NP_358270.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAK99480.1| (AE008445) Conserved hypothetical protein [Streptococcus pneumoniae
R6]
Length = 361
Score = 203 bits (516), Expect = 3e-51
Identities = 130/366 (35%), Positives = 202/366 (54%), Gaps = 27/366 (7%)
Query: 1 MKASIYDFTLKELSQLL----KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLERE 56
MK SI+ + + + + + FRA Q++ WLY K SF++M N SKD IA L +
Sbjct: 1 MKPSIHSLAHQTMQEWVLEQGEKKFRADQIWEWLYRKRVQSFEEM-TNLSKDLIAKLNDQ 59
Query: 57 FALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVC 116
F + ++ V+ES DG+ KYLF+ L D E VL++ + +VC
Sbjct: 60 FVVNPLKQRIVQESADGTVKYLFE-LPDGMLIETVLMR--------------QHYGLSVC 104
Query: 117 VSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKE--DNNLPLEKALNIVFMGMGE 174
V+ Q+ C +GC+FC + R+L EI+ Q +L+++ E+ +IV MG+GE
Sbjct: 105 VTTQVDCNIGCTFCASDLIKKQRDLNNGEIVAQIMLVQKYFAERGQDERVSHIVVMGIGE 164
Query: 175 PLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDD 232
P +N + V + N GM I + IT+STSG+A KI A + + V LA+SLHA ++
Sbjct: 165 PFDNYNNVLNFVCTINDDKGMAIGARHITVSTSGLAHKIRNFADEGVQVNLAVSLHAPNN 224
Query: 233 KTRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGI 292
+ RSS+M +N+ + IE + + + +RV FEY+++ ++NDS++ A +L +LL I
Sbjct: 225 ELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDSVEQALELAELLKNI 284
Query: 293 K--SKVNLILFNP-HEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
K S VNLI +NP E ++ R E F D L KG C +R+ DI+AACGQLR
Sbjct: 285 KKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEYGTDIDAACGQLR 344
Query: 350 EKKLSQ 355
+ +
Sbjct: 345 SNTMKR 350
>ref|NP_230406.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||D82283 conserved hypothetical protein VC0757 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF93922.1| (AE004161) conserved hypothetical protein [Vibrio cholerae]
Length = 373
Score = 202 bits (515), Expect = 4e-51
Identities = 132/361 (36%), Positives = 197/361 (54%), Gaps = 32/361 (8%)
Query: 2 KASIYDFTLKEL-----SQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLERE 56
K ++ DF K L +L + +FRA+Q+ W+Y F D NN +K L+ +
Sbjct: 5 KINLLDFDRKGLRTFFAEELGEKAFRAEQVMKWIYHFGCDDF-DQMNNINKQLREKLKAK 63
Query: 57 FALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVC 116
+R ++ + S DG+ K+ +++ D+ D ET I E ++ T+C
Sbjct: 64 CEIRAPYVSEAQHSADGTIKWA--------------MRVGDQ--DVETVYIPEDDRATLC 107
Query: 117 VSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKA----LNIVFMGM 172
VS Q+GC + C FC T + GF RNL+ SEII Q + L E N+V MGM
Sbjct: 108 VSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGM 167
Query: 173 GEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAV 230
GEPL N+ + A+EI + G +S +R+T+STSGV + + G+ + V LAISLHA
Sbjct: 168 GEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQ-IDVALAISLHAP 226
Query: 231 DDKTRSSLMPLNKKYNIECVLNEVRKWPLEQ---RKRVMFEYLLIKDLNDSLDCAKKLLK 287
+DK RS +MP+N ++NIE L VR++ R +V EY+L+ +ND + A +L +
Sbjct: 227 NDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAE 286
Query: 288 LLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQ 347
LL G K+NLI FNP+ GS +++PS F L TIR+++ DI+AACGQ
Sbjct: 287 LLKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQ 346
Query: 348 L 348
L
Sbjct: 347 L 347
>ref|NP_484399.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB72313.1| (AP003582) ORF_ID:all0355~hypothetical protein [Nostoc sp. PCC
7120]
Length = 322
Score = 201 bits (511), Expect = 1e-50
Identities = 124/339 (36%), Positives = 192/339 (56%), Gaps = 20/339 (5%)
Query: 13 LSQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVD 72
+ Q +P++R KQL+ W+Y K S D+ + FSK + A + + + I H + D
Sbjct: 1 MQQQGQPAYRGKQLHDWIYHKGVRSLTDI-SVFSKQWRAAVA-DVPIGRSTIHHRSVASD 58
Query: 73 GSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFT 132
G+ KYL + L D EAV + DK++ TVCVS Q+GC + C FC T
Sbjct: 59 GTVKYLLQ-LSDGEIVEAVGIPT-DKRL-------------TVCVSTQVGCPMACDFCAT 103
Query: 133 QKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCKAIEIFNTG 192
KGG+ RNL+ EI+ Q L ++ED ++ ++VFMGMGEPL N + V + N
Sbjct: 104 GKGGYKRNLERHEIVDQVLTVQEDFQ---QRVSHVVFMGMGEPLLNTENVLAGLRSLNQD 160
Query: 193 MQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLN 252
+ I + +T+ST G+ D+I LA +L V LA+SLHA + R L+P + Y+IE +L
Sbjct: 161 VGIGQRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIEDLLA 220
Query: 253 EVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERP 312
E R++ +R+ FEY+L+ +ND + A +L K L G ++ VNLI +N + ++RP
Sbjct: 221 ECREYVAITGRRISFEYILLAGVNDLPEHALELSKHLRGFQNHVNLIPYNSIDEVDYKRP 280
Query: 313 SLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
S + + F L + + ++R S+ L+ +AACGQLR K
Sbjct: 281 SGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRTK 319
>ref|NP_565909.1| (NM_129523) expressed protein [Arabidopsis thaliana]
gb|AAL06909.1| (AY054250) At2g39670/F17A14.4 [Arabidopsis thaliana]
gb|AAL32891.1| (AY062813) Unknown protein [Arabidopsis thaliana]
gb|AAB97122.2| (AC003674) expressed protein [Arabidopsis thaliana]
Length = 428
Score = 199 bits (505), Expect = 5e-50
Identities = 129/348 (37%), Positives = 189/348 (54%), Gaps = 21/348 (6%)
Query: 10 LKELS-QLLKPSFRAKQLYLWLYAKYKTSFKDMQN---NFSKDFIAYLEREFALRTIEIT 65
L+EL+ L + +R KQL+ +Y + +D N F K + + F + I
Sbjct: 72 LQELAINLGQEGYRGKQLHHLIYKRKVNKVEDFSNLPLTFRKGLV---DGGFKVGRSPIY 128
Query: 66 HVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQV 125
+ DG+ K L K L DN E V + ++D + + T CVS Q+GC +
Sbjct: 129 QTVTATDGTIKLLLK-LEDNLLIETVGIPVQDDEKGIT--------RLTACVSSQVGCPL 179
Query: 126 GCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCKA 185
CSFC T KGGF RNL+ EII+Q L I++ + + N+VFMGMGEP+ NL V A
Sbjct: 180 RCSFCATGKGGFSRNLQRHEIIEQVLAIED---VFKHRVTNVVFMGMGEPMLNLKSVLDA 236
Query: 186 IEIFNTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKY 245
N ++I + ITIST GV + I LA L LA+SLHA + R ++P K Y
Sbjct: 237 HRCLNKDIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQSLREKIVPSAKAY 296
Query: 246 NIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNP 303
+E ++ + R + E +RV FEY L+ +ND ++ A +L +LL G VNLI +NP
Sbjct: 297 PLEAIMKDCRDYFQETNRRVSFEYALLAGVNDQVEHAVELAELLREWGKTYHVNLIPYNP 356
Query: 304 HEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
EGS+++RP + FA L S+ + ++R+++ LD AACGQLR K
Sbjct: 357 IEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGLDASAACGQLRNK 404
>ref|NP_660622.1| (NC_004061) hypothetical 43.1 kD protein in ndk-gcpE [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
gb|AAM67833.1| (AE014104) hypothetical 43.1 kD protein in ndk-gcpE [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 363
Score = 194 bits (494), Expect = 1e-48
Identities = 135/361 (37%), Positives = 194/361 (53%), Gaps = 35/361 (9%)
Query: 2 KASIYDFTLKELSQLL----KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K ++ D KE+ L F QL W+Y ++ +F ++ +N KD L
Sbjct: 14 KINLLDLNRKEIEIFLLSLGAKKFVTDQLMKWIYNRHCNNF-NLMSNLKKDIRKKLNERS 72
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCV 117
+ + S DG+ K++ + +KI ET I E+++ T+CV
Sbjct: 73 YIFASNFIEEKISYDGTVKWI--------------TSIDKQKI--ETIYIPEKKRATLCV 116
Query: 118 SCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQA-----LLIKEDNNLPLEKALNIVFMGM 172
S QIGC + C FC T + GF RNLK SEII Q +L ++ NN + NIVFMGM
Sbjct: 117 SSQIGCSLKCKFCATGQQGFNRNLKVSEIISQIWQANKILKEKKNNSTIT---NIVFMGM 173
Query: 173 GEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAV 230
GEPL NL+ V AI+I G +S +RIT+STSG+ + L K + V LAISLHA
Sbjct: 174 GEPLLNLNNVISAIKIILDKNGFGLSKRRITLSTSGIVPALNKLI-KKIDVSLAISLHAP 232
Query: 231 DDKTRSSLMPLNKKYNIECVLNEVRKWPLEQ---RKRVMFEYLLIKDLNDSLDCAKKLLK 287
+D R+S+MP+N KYNI+ LN V K+ R V EY++++ +ND + A++L
Sbjct: 233 NDFIRNSIMPINMKYNIKSFLNSVSKYLKHSHANRGGVTVEYVMLRGINDLNEHAEELGN 292
Query: 288 LLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQ 347
+L I SK+NLI +N + + F S +FA+ L KG TIR+++ DI AACGQ
Sbjct: 293 ILKKIPSKINLIPWNFFKNANFICSSKNRINIFANILRKKGFNTTIRKNRGQDIGAACGQ 352
Query: 348 L 348
L
Sbjct: 353 L 353
>ref|NP_266335.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
gb|AAK04277.1|AE006255_7 (AE006255) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
Length = 365
Score = 192 bits (489), Expect = 4e-48
Identities = 128/368 (34%), Positives = 200/368 (53%), Gaps = 32/368 (8%)
Query: 2 KASIYDFTLKELSQLL----KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
+ SIY T +L + + FRA Q++ WLY K SF++M +N S FI L F
Sbjct: 10 RPSIYGLTRDQLIEWAIENGEKKFRATQVWDWLYRKRVQSFEEM-SNLSAAFIDKLNEHF 68
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKY--TV 115
L +E V+ES DG+ KYLF L D E VL+ R+ Y +V
Sbjct: 69 ILNPLEQVVVQESADGTVKYLFM-LPDQMMIETVLM----------------RQSYGLSV 111
Query: 116 CVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKE--DNNLPLEKALNIVFMGMG 173
CV+ Q+GC +GC+FC + R++ A EI+ Q +L+++ D E+ ++V MG+G
Sbjct: 112 CVTTQVGCNMGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDERGLDERVSHVVVMGIG 171
Query: 174 EPLNNLDEVCKAIEIFN--TGMQISPKRITISTSG-VADKIPILAGKNLGVQLAISLHAV 230
EP +N + + + + N G+ I + IT+ST G + KI A +NL + LAISLHA
Sbjct: 172 EPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISLHAP 231
Query: 231 DDKTRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLL- 289
+++ R+SLM + + +E + + + +RV +EY+++ NDS + A++L L+
Sbjct: 232 NNELRTSLMRITRNAPLEKLFEAIDYYTETTNRRVTYEYIMLSGENDSPEIAQQLADLIK 291
Query: 290 -NGIKSKVNLILFNP-HEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQ 347
S VNLI +NP E K+ER + +N F D L G+ C +R+ DI+AACGQ
Sbjct: 292 PRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDAACGQ 351
Query: 348 LREKKLSQ 355
LR K++ +
Sbjct: 352 LRSKQIKK 359
>ref|NP_564755.1| (NM_104713) expressed protein [Arabidopsis thaliana]
gb|AAK96886.1| (AY054695) Unknown protein [Arabidopsis thaliana]
gb|AAM10038.1| (AY081476) unknown protein [Arabidopsis thaliana]
Length = 458
Score = 192 bits (488), Expect = 5e-48
Identities = 108/312 (34%), Positives = 174/312 (55%), Gaps = 18/312 (5%)
Query: 40 DMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKK 99
D +KD + + +R + DG++K LF +L D E V++
Sbjct: 137 DELEGLNKDLKRMISEHAEFGALSFKDIRSASDGTRKILF-TLDDGLVIETVVIPC---- 191
Query: 100 IDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNL 159
+R + TVCVS Q+GC + C FC+T + G RNL +EI++QA+ + +
Sbjct: 192 ---------DRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSH 242
Query: 160 PLEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
+ N+VFMGMGEP +N+D V KA I G+ SP+++T+STSG+ ++ +
Sbjct: 243 EVGSITNVVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFL-R 301
Query: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWPLEQRK-RVMFEYLLIKDLN 276
LA+SL+A D+ R+ +MP+N+KY + +L +R+ + K +V+FEY+++ +N
Sbjct: 302 ESNCALAVSLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVN 361
Query: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRES 336
DS+D A++L++L+ GI K+NLI FNPH GS+F + + F + L G +R S
Sbjct: 362 DSMDDARRLVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFS 421
Query: 337 KALDIEAACGQL 348
+ D AACGQL
Sbjct: 422 RGNDQMAACGQL 433
>ref|NP_406387.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC92133.1| (AJ414154) conserved hypothetical protein [Yersinia pestis]
Length = 398
Score = 192 bits (488), Expect = 5e-48
Identities = 126/338 (37%), Positives = 187/338 (55%), Gaps = 29/338 (8%)
Query: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKYLFK 80
FRA Q+ W+Y F+ M + +K A L+R +R E+ + SVDG+ K+
Sbjct: 54 FRADQVMKWMYHYCYDDFEQM-TDINKGLRAKLQRVAEIRAPEVAEEQRSVDGTIKWA-- 110
Query: 81 SLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140
+K+ D+++ ET I E ++ T+CVS Q+GC + C FC T + GF RN
Sbjct: 111 ------------IKVGDQQV--ETVYIPEADRATLCVSSQVGCALECKFCSTAQQGFNRN 156
Query: 141 LKASEIIQQ----ALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQ 194
L+ SEII Q A +I + N+V MGMGEPL NL+ V A++I + G
Sbjct: 157 LRVSEIIGQVWRAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFG 216
Query: 195 ISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEV 254
+S +R+T+STSGV + L G + V LAISLHA D R ++P+N+KYNIE L V
Sbjct: 217 LSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHAPTDDIRDEIVPINRKYNIETFLAAV 275
Query: 255 RKWPLEQRK----RVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFE 310
R++ L++ K RV EY+++ +NDS + A +L + L K+NLI +NP G+ +
Sbjct: 276 RRY-LDKSKANGGRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKINLIPWNPFPGAPYG 334
Query: 311 RPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQL 348
R S F+ L G +R+++ DI+AACGQL
Sbjct: 335 RSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQL 372
>ref|NP_284238.1| (NC_003116) conserved hypothetical protein [Neisseria meningitidis
Z2491]
pir||F81843 conserved hypothetical protein NMA1522 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB84750.1| (AL162756) conserved hypothetical protein [Neisseria meningitidis
Z2491]
Length = 364
Score = 192 bits (488), Expect = 5e-48
Identities = 120/361 (33%), Positives = 203/361 (55%), Gaps = 33/361 (9%)
Query: 1 MKASIYDFTLKELSQ----LLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLERE 56
MK ++ ++ L+ L++ + + FRAKQ+ W++ +F +M + +K L +
Sbjct: 1 MKTNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFNEM-TDLAKSLRHKLNEQ 59
Query: 57 FALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVC 116
+ ++ ++S DG++K+L N ET I E ++ T+C
Sbjct: 60 AGIEIPKLMMSQKSSDGTRKWLLDVGTGN---------------GVETVFIPESDRGTLC 104
Query: 117 VSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQ------ALLIKEDNNLPLEKALNIVFM 170
+S Q+GC + C+FC T + GF RNL A+EII Q A+ + N + N+V M
Sbjct: 105 ISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVIS---NVVMM 161
Query: 171 GMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLH 228
GMGEP+ N D V A+ I + G +S +R+T+STSG+ ++ L + V LA+SLH
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDV-MPVALAVSLH 220
Query: 229 AVDDKTRSSLMPLNKKYNIECVLNEVRKWPLEQ-RKRVMFEYLLIKDLNDSLDCAKKLLK 287
A +D+ R+ ++PLNKKY ++ ++ +++ ++ R + FEY+++ +ND A++L++
Sbjct: 221 ASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIE 280
Query: 288 LLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQ 347
L+ + K NLI FNP S +ER S EN R+F D L G + T+R+++ DI+AACGQ
Sbjct: 281 LVTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQ 340
Query: 348 L 348
L
Sbjct: 341 L 341
>pir||T02275 hypothetical protein T13D8.12 - Arabidopsis thaliana
gb|AAC24056.1| (AC004473) Contains similarity to hypothetical 43.1 KD protein in
NDK-GCPE intergenic region gb|493519 from E. coli
sequence gb|U02965. [Arabidopsis thaliana]
Length = 454
Score = 192 bits (488), Expect = 5e-48
Identities = 108/312 (34%), Positives = 174/312 (55%), Gaps = 18/312 (5%)
Query: 40 DMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKK 99
D +KD + + +R + DG++K LF +L D E V++
Sbjct: 133 DELEGLNKDLKRMISEHAEFGALSFKDIRSASDGTRKILF-TLDDGLVIETVVIPC---- 187
Query: 100 IDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNL 159
+R + TVCVS Q+GC + C FC+T + G RNL +EI++QA+ + +
Sbjct: 188 ---------DRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSH 238
Query: 160 PLEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
+ N+VFMGMGEP +N+D V KA I G+ SP+++T+STSG+ ++ +
Sbjct: 239 EVGSITNVVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFL-R 297
Query: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWPLEQRK-RVMFEYLLIKDLN 276
LA+SL+A D+ R+ +MP+N+KY + +L +R+ + K +V+FEY+++ +N
Sbjct: 298 ESNCALAVSLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVN 357
Query: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRES 336
DS+D A++L++L+ GI K+NLI FNPH GS+F + + F + L G +R S
Sbjct: 358 DSMDDARRLVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFS 417
Query: 337 KALDIEAACGQL 348
+ D AACGQL
Sbjct: 418 RGNDQMAACGQL 429
>ref|NP_274327.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||B81098 conserved hypothetical protein NMB1308 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41683.1| (AE002479) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 364
Score = 192 bits (487), Expect = 6e-48
Identities = 120/361 (33%), Positives = 203/361 (55%), Gaps = 33/361 (9%)
Query: 1 MKASIYDFTLKELSQ----LLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLERE 56
MK ++ ++ L+ L++ + + FRAKQ+ W++ +F +M + +K L +
Sbjct: 1 MKTNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFDEM-TDLAKSLRHKLNEQ 59
Query: 57 FALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVC 116
+ ++ ++S DG++K+L N ET I E ++ T+C
Sbjct: 60 AGIEIPKLMMSQKSSDGTRKWLLDVGTGN---------------GVETVFIPESDRGTLC 104
Query: 117 VSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQ------ALLIKEDNNLPLEKALNIVFM 170
+S Q+GC + C+FC T + GF RNL A+EII Q A+ + N + N+V M
Sbjct: 105 ISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVIS---NVVMM 161
Query: 171 GMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLH 228
GMGEP+ N D V A+ I + G +S +R+T+STSG+ ++ L + V LA+SLH
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDV-MPVALAVSLH 220
Query: 229 AVDDKTRSSLMPLNKKYNIECVLNEVRKWPLEQ-RKRVMFEYLLIKDLNDSLDCAKKLLK 287
A +D+ R+ ++PLNKKY ++ ++ +++ ++ R + FEY+++ +ND A++L++
Sbjct: 221 ASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIE 280
Query: 288 LLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQ 347
L+ + K NLI FNP S +ER S EN R+F D L G + T+R+++ DI+AACGQ
Sbjct: 281 LVTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQ 340
Query: 348 L 348
L
Sbjct: 341 L 341
>ref|NP_294660.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||F75457 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10513.1|AE001946_5 (AE001946) conserved hypothetical protein [Deinococcus radiodurans]
Length = 346
Score = 190 bits (483), Expect = 2e-47
Identities = 122/331 (36%), Positives = 173/331 (51%), Gaps = 19/331 (5%)
Query: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKYLFK 80
FR KQL W++ + +F D N A LE E+ L S DGS KYLF
Sbjct: 17 FRRKQLLEWVFVQGVGTF-DAMTNLPAGLRAELESEYQLNPFRDIETVRSHDGSVKYLF- 74
Query: 81 SLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140
+L D EAV + D+K T+CVS +GC C+FC T K GF RN
Sbjct: 75 TLNDGRQMEAVYMPYLDRK--------------TICVSTMVGCPARCAFCATGKMGFGRN 120
Query: 141 LKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPK 198
L EI+ Q L + + + N+VFMGMGE L N + A + + +S +
Sbjct: 121 LTPGEIVGQVLAVAGGEGISPREIRNLVFMGMGEALLNYENSMAAARVLLHPDALGMSKR 180
Query: 199 RITISTSGVADKIPILAGKN-LGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
R+T+ST G+A I LA ++ LG++LAISLHA D++TR ++P +IE ++ R +
Sbjct: 181 RVTLSTVGIAKGIRRLAEEDDLGIKLAISLHAPDEETRQQIIPTGAANSIEEIMAAARDY 240
Query: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLENA 317
+RV EY +++ +ND L A+ L L+G+ S VNLI NP +GS F S E
Sbjct: 241 QAVTGRRVTMEYTMLRGVNDHLWQAELLADRLDGLVSHVNLIPMNPWDGSDFVSSSEEQI 300
Query: 318 RMFADFLNSKGLLCTIRESKALDIEAACGQL 348
+ F D L +G+ ++R S+ D AACGQL
Sbjct: 301 QAFYDALQDRGVDVSVRRSRGKDAGAACGQL 331
>ref|NP_642342.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM36878.1| (AE011837) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 405
Score = 189 bits (481), Expect = 3e-47
Identities = 125/344 (36%), Positives = 188/344 (54%), Gaps = 30/344 (8%)
Query: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKYLFK 80
+RA Q+ W++ +Y T F D + K A L + + + + S DG+ K+L
Sbjct: 50 YRAHQVMKWIHHRYVTDF-DQMTDLGKALRAKLHQHAEVLVPNVVFDKPSADGTHKWL-- 106
Query: 81 SLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140
L D K ET I ++ + T+CVS Q+GC + CSFC T GF RN
Sbjct: 107 -----------LAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCSFCSTATQGFNRN 155
Query: 141 LKASEIIQQA-LLIKEDNNLPLE--KALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQI 195
L +EII Q + + N+P + + N+V MGMGEPL N D V +A+ + + G +
Sbjct: 156 LTTAEIIGQVWVAARHLGNVPHQQRRLTNVVMMGMGEPLMNFDNVVRAMSVMRDDLGYGL 215
Query: 196 SPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVR 255
+ KR+T+STSG+ I L+ ++ V LA+SLHA +D R SL+PLNKKY I ++
Sbjct: 216 ASKRVTLSTSGLVPMIDRLSTES-DVSLAVSLHAANDALRESLVPLNKKYPIAELMESCA 274
Query: 256 KWPLEQRKR--VMFEYLLIKDLNDSLDCAKKLLKLL----NGIKS----KVNLILFNPHE 305
++ +KR V FEY L+K +ND + A++L +L+ N ++S KVNLI FNP
Sbjct: 275 RYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKDAGKVNLIPFNPFP 334
Query: 306 GSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
G+++ER R F L +L +R ++ DI+AACGQL+
Sbjct: 335 GTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLK 378
>ref|NP_637347.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM41271.1| (AE012303) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 401
Score = 189 bits (480), Expect = 4e-47
Identities = 125/344 (36%), Positives = 188/344 (54%), Gaps = 30/344 (8%)
Query: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKYLFK 80
+RA Q+ W++ +Y T F D + K A L + + + + S DG+ K+L
Sbjct: 46 YRAHQVMKWIHHRYVTDF-DQMTDLGKALRAKLHQHAEVLVPNVVFDKPSTDGTHKWL-- 102
Query: 81 SLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140
L D K ET I ++ + T+CVS Q+GC + C+FC T GF RN
Sbjct: 103 -----------LAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCTFCSTATQGFNRN 151
Query: 141 LKASEIIQQA-LLIKEDNNLPLE--KALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQI 195
L +EII Q + + N+P + + N+V MGMGEPL N D V +A+ + + G +
Sbjct: 152 LTTAEIIGQVWVAARHLGNVPHQQRRLTNVVMMGMGEPLMNFDNVVRAMSVMRDDLGYGL 211
Query: 196 SPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVR 255
+ KR+T+STSG+ I LA ++ V LA+SLHA +D R SL+PLNKKY I ++
Sbjct: 212 ASKRVTLSTSGLVPMIDRLATES-DVSLAVSLHAANDVLRESLVPLNKKYPIAELMESCA 270
Query: 256 KWPLEQRKR--VMFEYLLIKDLNDSLDCAKKLLKLL----NGIKS----KVNLILFNPHE 305
++ +KR V FEY L+K +ND + A++L +L+ N ++S KVNLI FNP
Sbjct: 271 RYLRGNKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKDAGKVNLIPFNPFP 330
Query: 306 GSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
G+++ER R F L +L +R ++ DI+AACGQL+
Sbjct: 331 GTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLK 374
>ref|NP_297749.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||F82803 conserved hypothetical protein XF0459 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF83269.1|AE003896_6 (AE003896) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 406
Score = 187 bits (476), Expect = 1e-46
Identities = 126/344 (36%), Positives = 188/344 (54%), Gaps = 30/344 (8%)
Query: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKYLFK 80
+RA Q+ W++ +Y + F+ M + K A L+ +R + + S DG+ K+L
Sbjct: 51 YRAHQVMKWIHHRYVSDFEQM-TDVGKALRARLQACAEVRVPCVVFDKHSADGTHKWL-- 107
Query: 81 SLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140
L D K ET I ++ + T+CVS QIGC + C+FC T GF RN
Sbjct: 108 -----------LAMDTDSKNAIETVYIPDKGRGTLCVSSQIGCGLNCTFCSTATQGFNRN 156
Query: 141 LKASEIIQQA-LLIKEDNNLPLE--KALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQI 195
L +EII Q + + N+P + + N+V MGMGEPL N D V +A+ + + G +
Sbjct: 157 LTTAEIIGQVWVAARHLGNVPHQQRRLTNVVMMGMGEPLMNFDNVVRAMSVMRDDLGYGL 216
Query: 196 SPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVR 255
S KR+T+STSG+ I L+ ++ V LA+SLHA +DK R L+PLNKKY I ++
Sbjct: 217 SNKRVTLSTSGLVPMIDRLSTES-DVSLAVSLHAPNDKLREQLVPLNKKYPIAELMASCE 275
Query: 256 KWPLEQRKR--VMFEYLLIKDLNDSLDCAKKLLKLLNGI--------KSKVNLILFNPHE 305
++ RKR V FEY L+K +ND + A +L+KL+ +KVNLI FNP
Sbjct: 276 RYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELVKLMRQFDCAMQVKGAAKVNLIPFNPFP 335
Query: 306 GSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
G+ +ER + + R F L +L +R ++ DI+AACGQL+
Sbjct: 336 GTYYERSTEVDIRAFQKILLDAQILAMVRRTRGDDIDAACGQLK 379
>ref|NP_240110.1| (NC_002528) hypothetical protein [Buchnera sp. APS]
sp|P57373|Y286_BUCAI Hypothetical protein BU286
dbj|BAB12996.1| (AP001118) hypothetical protein [Buchnera sp. APS]
Length = 363
Score = 187 bits (476), Expect = 1e-46
Identities = 132/361 (36%), Positives = 190/361 (52%), Gaps = 35/361 (9%)
Query: 2 KASIYDFTLKELSQLL----KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K ++ D + L L +F +Q+ W+Y Y F M N K E+ +
Sbjct: 14 KINLLDLNRQNLKYFLISLGAKNFCTEQVMSWIYNYYCDDFNKMLNISIKTRKKLYEKSY 73
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCV 117
+ E + S DG+ K++ + ++KI ET + E+++ T+CV
Sbjct: 74 IFAS-EFIEEKISYDGTIKWI--------------TDINNQKI--ETVYMPEKKRSTLCV 116
Query: 118 SCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKAL-----NIVFMGM 172
S QIGC + C FC T + GF RNLK SEII Q I + N EK + NIVFMGM
Sbjct: 117 SSQIGCSLKCHFCATGQEGFQRNLKVSEIIAQ---IWQANKRLKEKNIKKNITNIVFMGM 173
Query: 173 GEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAV 230
GEPL NL V A+ I G +S +R+T+STSG+ + L + V LAISLHA
Sbjct: 174 GEPLLNLKNVVSALTIILDEYGFGLSKRRVTLSTSGIVPALDKLRNM-IDVSLAISLHAP 232
Query: 231 DDKTRSSLMPLNKKYNIECVLNEVRKW---PLEQRKRVMFEYLLIKDLNDSLDCAKKLLK 287
+D R+ +MP+N+KYNI VL+ K+ R + EY+++ +NDS + A++L
Sbjct: 233 NDFIRNIIMPINRKYNISSVLSSALKYFKYSNANRGGITIEYVMLDRINDSNENARQLSV 292
Query: 288 LLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQ 347
LL+ I SK+NLI +N G F + + MFA+ L KG TIR+++ DI AACGQ
Sbjct: 293 LLSKIPSKINLIPWNSFSGPSFLCSNTDRINMFANILRKKGFTTTIRKNRGEDINAACGQ 352
Query: 348 L 348
L
Sbjct: 353 L 353
>dbj|BAB92792.1| (AP003855) florfenicol resistance protein-like [Oryza sativa
(japonica cultivar-group)]
Length = 396
Score = 187 bits (475), Expect = 2e-46
Identities = 112/308 (36%), Positives = 175/308 (56%), Gaps = 27/308 (8%)
Query: 46 SKDFIAYLEREFALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETN 105
+KDF L L+ + + + + DG++K LF SL D E V++ +
Sbjct: 94 NKDFRKMLTDHADLKALTVKDILNASDGTRKILF-SLEDGSVIETVVIPCTSGRT----- 147
Query: 106 AILEREKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKAL 165
TVCVS Q+GC + C FCFT + G ++L +EI++QA+ + +
Sbjct: 148 --------TVCVSSQVGCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFGSIT 199
Query: 166 NIVFMGMGEPLNNLDEVCKA--IEIFNTGMQISPKRITISTSGVADKIPILAGKNLGVQL 223
N+VFMGMGEPL+N+D V KA I + G+Q SP+++T+STSG+ +I ++ L
Sbjct: 200 NVVFMGMGEPLHNIDNVLKASAIMVDEQGLQFSPRKVTVSTSGLVPQIKRFLQES-NCAL 258
Query: 224 AISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW-PLEQRKRVMFEYLLIKDLNDSLDCA 282
A+ R+ +MP+N+KYN+ +L +R+ L+++ +V FEY+++ +NDS+D A
Sbjct: 259 AV---------RNWIMPINRKYNLSLLLGTLREEIRLKKKYKVFFEYVMLAGVNDSVDDA 309
Query: 283 KKLLKLLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIE 342
K+L+ L+ GI K+NLI FNPH GS+F+ E F + L GL+ +R S+ D
Sbjct: 310 KRLVDLVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNILIQDGLVVFVRLSRGDDQM 369
Query: 343 AACGQLRE 350
AACGQL E
Sbjct: 370 AACGQLGE 377
>ref|NP_417012.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P36979|YFGB_ECOLI Hypothetical protein yfgB
pir||D65028 hypothetical 43.1 kD protein in ndk-gcpE intergenic region -
Escherichia coli (strain K-12)
gb|AAA21359.1| (U02965) unknown [Escherichia coli]
gb|AAC75570.1| (AE000338) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA16404.1| (D90881) similar to [SwissProt Accession Number P36979]
[Escherichia coli]
dbj|BAA16408.1| (D90882) similar to [SwissProt Accession Number P36979]
[Escherichia coli]
Length = 384
Score = 187 bits (475), Expect = 2e-46
Identities = 127/361 (35%), Positives = 194/361 (53%), Gaps = 33/361 (9%)
Query: 2 KASIYDFTLKELSQLLKP----SFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K ++ D +++ + K FRA Q+ W+Y +F +M + +K L+
Sbjct: 17 KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEM-TDINKVLRGKLKEVA 75
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCV 117
+R E+ + S DG+ K+ + + D+++ ET I E ++ T+CV
Sbjct: 76 EIRAPEVVEEQRSSDGTIKWA--------------IAVGDQRV--ETVYIPEDDRATLCV 119
Query: 118 SCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQ----ALLIKEDNNLPLEKALNIVFMGMG 173
S Q+GC + C FC T + GF RNL+ SEII Q A ++ N+V MGMG
Sbjct: 120 SSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMG 179
Query: 174 EPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVD 231
EPL NL+ V A+EI + G +S +R+T+STSGV + L G + V LAISLHA +
Sbjct: 180 EPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHAPN 238
Query: 232 DKTRSSLMPLNKKYNIECVLNEVRKWPLEQRK----RVMFEYLLIKDLNDSLDCAKKLLK 287
D+ R ++P+NKKYNIE L VR++ LE+ RV EY+++ +ND + A +L +
Sbjct: 239 DEIRDEIVPINKKYNIETFLAAVRRY-LEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAE 297
Query: 288 LLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQ 347
LL K+NLI +NP G+ + R S F+ L S G +R+++ DI+AACGQ
Sbjct: 298 LLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQ 357
Query: 348 L 348
L
Sbjct: 358 L 358
>ref|NP_252495.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
sp|Q51385|Y2A6_PSEAE Hypothetical protein PA3806
pir||JC5303 hypothetical 41.7K protein - Pseudomonas aeruginosa
pir||A83172 conserved hypothetical protein PA3806 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAB40948.1| (L49434) homologous to HI0365 in Haemophilus influenzae; ORF1
[Pseudomonas aeruginosa]
gb|AAG07193.1|AE004798_16 (AE004798) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 379
Score = 187 bits (474), Expect = 2e-46
Identities = 128/359 (35%), Positives = 194/359 (53%), Gaps = 29/359 (8%)
Query: 2 KASIYDFTLKELSQLLKP----SFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K ++ T +L Q + FRA Q+ W++ F D N K L+
Sbjct: 8 KVNLLGLTQPQLEQFFESIGEKRFRAGQVMKWIHHFGVDDF-DAMTNVGKALREKLKASA 66
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCV 117
+R EI S DG++K++ + + ET I + + T+CV
Sbjct: 67 EIRGPEIVSQDISADGTRKWVVRVASGSCV---------------ETVYIPQGGRGTLCV 111
Query: 118 SCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLI-KEDNNLP--LEKAL-NIVFMGMG 173
S Q GC + CSFC T K GF +L A+E+I Q + K +P +++A+ N+V MGMG
Sbjct: 112 SSQAGCALDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPAKIDRAITNVVMMGMG 171
Query: 174 EPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVD 231
EPL N D V A+ I + G IS +++T+STSGV I L G+ + V LA+SLHA +
Sbjct: 172 EPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKL-GEVIDVSLALSLHAPN 230
Query: 232 DKTRSSLMPLNKKYNIECVLNEVRKW--PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLL 289
D+ R+ L+P+NKKY + +L+ R++ L +++ + EY L+KD+ND + A++++ LL
Sbjct: 231 DELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIALL 290
Query: 290 NGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQL 348
K+NLI FNP S +ERPS R F D L+ G T+R ++ DI+AACGQL
Sbjct: 291 KDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQL 349
>ref|NP_457057.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD02728.1| (AL627275) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 388
Score = 186 bits (472), Expect = 4e-46
Identities = 127/361 (35%), Positives = 192/361 (53%), Gaps = 33/361 (9%)
Query: 2 KASIYDFTLKELSQLLK----PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K ++ D +++ + K FRA Q+ W+Y +F +M + +K L+
Sbjct: 21 KINLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEM-TDINKVLRGKLKEVA 79
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCV 117
+R E+ + S DG+ K+ + + D+++ ET I E ++ T+CV
Sbjct: 80 EIRAPEVVEEQRSSDGTIKWA--------------IAVGDQRV--ETVYIPEDDRATLCV 123
Query: 118 SCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQ----ALLIKEDNNLPLEKALNIVFMGMG 173
S Q+GC + C FC T + GF RNL+ SEII Q A ++ N+V MGMG
Sbjct: 124 SSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMG 183
Query: 174 EPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVD 231
EPL NL V A+EI + G +S +R+T+STSGV + L G + V LAISLHA +
Sbjct: 184 EPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHAPN 242
Query: 232 DKTRSSLMPLNKKYNIECVLNEVRKWPLEQRK----RVMFEYLLIKDLNDSLDCAKKLLK 287
D R ++P+NKKYNIE L VR++ LE+ RV EY+++ +ND + A +L +
Sbjct: 243 DTIRDEIVPINKKYNIETFLGAVRRY-LEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAE 301
Query: 288 LLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQ 347
LL K+NLI +NP G+ + R S F+ L S G +R+++ DI+AACGQ
Sbjct: 302 LLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQ 361
Query: 348 L 348
L
Sbjct: 362 L 362
>ref|NP_461460.1| (NC_003197) putative Fe-S-cluster redox enzyme [Salmonella
typhimurium LT2]
gb|AAL21419.1| (AE008814) putative Fe-S-cluster redox enzyme [Salmonella
typhimurium LT2]
Length = 388
Score = 186 bits (472), Expect = 4e-46
Identities = 127/361 (35%), Positives = 192/361 (53%), Gaps = 33/361 (9%)
Query: 2 KASIYDFTLKELSQLLK----PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K ++ D +++ + K FRA Q+ W+Y +F +M + +K L+
Sbjct: 21 KINLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEM-TDINKVLRGKLKEVA 79
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCV 117
+R E+ + S DG+ K+ + + D+++ ET I E ++ T+CV
Sbjct: 80 EIRAPEVVEEQRSSDGTIKWA--------------IAVGDQRV--ETVYIPEDDRATLCV 123
Query: 118 SCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQ----ALLIKEDNNLPLEKALNIVFMGMG 173
S Q+GC + C FC T + GF RNL+ SEII Q A ++ N+V MGMG
Sbjct: 124 SSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMG 183
Query: 174 EPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVD 231
EPL NL V A+EI + G +S +R+T+STSGV + L G + V LAISLHA +
Sbjct: 184 EPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHAPN 242
Query: 232 DKTRSSLMPLNKKYNIECVLNEVRKWPLEQRK----RVMFEYLLIKDLNDSLDCAKKLLK 287
D R ++P+NKKYNIE L VR++ LE+ RV EY+++ +ND + A +L +
Sbjct: 243 DTIRDEIVPINKKYNIETFLGAVRRY-LEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAE 301
Query: 288 LLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQ 347
LL K+NLI +NP G+ + R S F+ L S G +R+++ DI+AACGQ
Sbjct: 302 LLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQ 361
Query: 348 L 348
L
Sbjct: 362 L 362
>ref|NP_311406.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
dbj|BAB36802.1| (AP002561) hypothetical protein [Escherichia coli O157:H7]
Length = 384
Score = 185 bits (469), Expect = 8e-46
Identities = 126/361 (34%), Positives = 193/361 (52%), Gaps = 33/361 (9%)
Query: 2 KASIYDFTLKELSQLLKP----SFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K ++ D +++ + K FRA Q+ W+Y +F +M + +K L+
Sbjct: 17 KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEM-TDINKVLRGKLKEVA 75
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCV 117
+R E+ + S DG+ K+ + + D+++ ET I E ++ T+CV
Sbjct: 76 EIRAPEVVEEQRSSDGTIKWA--------------IAVGDQRV--ETVYIPEDDRATLCV 119
Query: 118 SCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQ----ALLIKEDNNLPLEKALNIVFMGMG 173
S Q+GC + C FC T + GF RNL+ SEII Q A ++ N+V MGMG
Sbjct: 120 SSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMG 179
Query: 174 EPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVD 231
EPL NL+ V A+EI + G +S +R+T+STSGV + L G + V LAISLHA +
Sbjct: 180 EPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHAPN 238
Query: 232 DKTRSSLMPLNKKYNIECVLNEVRKWPLEQRK----RVMFEYLLIKDLNDSLDCAKKLLK 287
D+ R ++P+NKKYNIE L VR++ LE+ RV EY+++ +ND + A +L +
Sbjct: 239 DEIRDEIVPINKKYNIETFLAAVRRY-LEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAE 297
Query: 288 LLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQ 347
LL K+NLI +NP + + R S F+ L S G +R+++ DI+AACGQ
Sbjct: 298 LLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQ 357
Query: 348 L 348
L
Sbjct: 358 L 358
>dbj|BAB63695.1| (AP003277) contains EST AU095933(S11713)~unknown protein [Oryza
sativa (japonica cultivar-group)]
dbj|BAB89869.1| (AP003298) contains EST AU095933(S11713)~similar to Arabidopsis
thaliana chromosome 2, At2g39670~unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 386
Score = 181 bits (460), Expect = 9e-45
Identities = 120/324 (37%), Positives = 180/324 (55%), Gaps = 22/324 (6%)
Query: 10 LKELS-QLLKPSFRAKQLYLWLY---AKYKTSFKDMQNNFSKDFIAYLEREFALRTIEIT 65
L++L+ L + S+R KQL+ LY AK F + F + A + + + +
Sbjct: 46 LRQLAVDLGQQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFRE---ALVGAGWKVGRSPVH 102
Query: 66 HVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQV 125
H + DG+ K L K L DN E V + + D K + + T CVS Q+GC +
Sbjct: 103 HAVTASDGTTKILLK-LEDNRLIETVGIPVDDDKGPS---------RLTACVSSQVGCPL 152
Query: 126 GCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCKA 185
CSFC T KGGF RNL A EI++Q L I+E + N+VFMGMGEP+ NL V +A
Sbjct: 153 RCSFCATGKGGFARNLHAHEIVEQVLAIEETFQ---HRVTNVVFMGMGEPMLNLKSVLEA 209
Query: 186 IEIFNTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKY 245
N ++I + ITIST GV I LA L LA+SLHA + K R +++P K Y
Sbjct: 210 HRCLNKELKIGQRMITISTVGVPSTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKSY 269
Query: 246 NIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNP 303
+E ++++ + + LE +RV FEY L+ +ND+ + A++L +LL+ G VNLI +NP
Sbjct: 270 PLEALMDDCKNYFLETGRRVSFEYTLLAGINDAKEHAEELAELLHTCGGGYHVNLIPYNP 329
Query: 304 HEGSKFERPSLENARMFADFLNSK 327
+GS+++RP + + F D L ++
Sbjct: 330 IQGSEYKRPYRKVVQAFVDALEAR 353
>ref|NP_662074.1| (NC_002932) florfenicol resistance protein, putative [Chlorobium
tepidum TLS]
gb|AAM72416.1| (AE012879) florfenicol resistance protein, putative [Chlorobium
tepidum TLS]
Length = 374
Score = 181 bits (459), Expect = 1e-44
Identities = 121/347 (34%), Positives = 185/347 (52%), Gaps = 18/347 (5%)
Query: 11 KELSQLL----KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITH 66
KEL++LL +P++RA QL+ WLY+ F++M + SK L E+ + +
Sbjct: 31 KELTELLTRLGEPAYRANQLHRWLYSNQALRFEEM-STLSKQLRQKLASEWIIHPASLVG 89
Query: 67 V-RESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQV 125
RE+ D S L + L+K++D ++ E+ I E+ T C+S QIGC +
Sbjct: 90 TERETTDAS-------LVTGNPTAKFLIKLEDNEL-VESVLIPSEERITACISSQIGCPL 141
Query: 126 GCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKAL-NIVFMGMGEPLNNLDEVCK 184
C+FC T GF RNL ASEI Q L++++ + L NIVFMGMGEPL NLD V +
Sbjct: 142 RCTFCATGHMGFRRNLTASEITDQVFLLEKEAQKRHWRGLTNIVFMGMGEPLLNLDNVLE 201
Query: 185 AIEIFNTG---MQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPL 241
+I IS ++ITIST G+ ++ +A L +LAISLH+ D R +MP+
Sbjct: 202 SIGTLTEKDYQFSISERKITISTVGLPVEMDRIARSGLKTKLAISLHSADQLIRERMMPI 261
Query: 242 NKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILF 301
++ + + + + V Y+L++ +NDS + A+KL++ + K+NLI +
Sbjct: 262 AADITLDKLAKAINSYNSVTSQPVTLVYMLLEGINDSPEDARKLVRFAKRVLCKINLIDY 321
Query: 302 NPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQL 348
N KF+ + MF L GLL T+R+S+ I AACGQL
Sbjct: 322 NSIVTLKFKPGCSSSKTMFIQQLLDAGLLVTVRKSQGATINAACGQL 368
>ref|NP_289070.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
gb|AAG57627.1|AE005481_3 (AE005481) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
Length = 384
Score = 177 bits (450), Expect = 1e-43
Identities = 123/361 (34%), Positives = 190/361 (52%), Gaps = 33/361 (9%)
Query: 2 KASIYDFTLKELSQLLKP----SFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K ++ D +++ + K FRA Q+ W+Y +F +M + +K L+
Sbjct: 17 KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEM-TDINKVLRGKLKEVA 75
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCV 117
+R E+ + S DG+ K+ + + D+++ ET I E ++ T+CV
Sbjct: 76 EIRAPEVVEEQRSSDGTIKWA--------------IAVGDQRV--ETVYIPEDDRATLCV 119
Query: 118 SCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQ----ALLIKEDNNLPLEKALNIVFMGMG 173
S Q+GC + C FC T + GF RNL+ SEII Q A ++ N+V MGMG
Sbjct: 120 SSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMG 179
Query: 174 EPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVD 231
EPL NL+ V A+EI + G +S +R+T+STSGV + L G + V LAISLHA +
Sbjct: 180 EPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHAPN 238
Query: 232 DKTRSSLMPLNKKYNIECVLNEVRKWPLEQRK----RVMFEYLLIKDLNDSLDCAKKLLK 287
D+ R ++P+NK N E L VR++ LE+ RV EY+++ +ND + A +L +
Sbjct: 239 DEIRDEIVPINKXXNXETFLAAVRRY-LEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAE 297
Query: 288 LLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQ 347
LL K+NLI +NP + + R S F+ L S G +R+++ DI+AACGQ
Sbjct: 298 LLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQ 357
Query: 348 L 348
L
Sbjct: 358 L 358
>ref|NP_519333.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD14914.1| (AL646063) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 383
Score = 177 bits (450), Expect = 1e-43
Identities = 119/339 (35%), Positives = 177/339 (52%), Gaps = 27/339 (7%)
Query: 20 SFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKYLF 79
SFRAKQL W++ F +M + +K L ++ + S DG++K+L
Sbjct: 26 SFRAKQLQRWIHQSGAADFGEM-TDLAKSLREKLATRATIQAPAVISDHLSSDGTRKWLV 84
Query: 80 KSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGFVR 139
N ET I E + T+CVS Q GC V C FC T K GF R
Sbjct: 85 DVGAGNAV---------------ETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSR 129
Query: 140 NLKASEIIQQALLIKEDNNLPLEKA-------LNIVFMGMGEPLNNLDEVCKAIEIF--N 190
NL EI+ Q + + L + N+V MGMGEPL N D V A+ + +
Sbjct: 130 NLSTGEIVGQLWMAEFAMRKQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVPAMRLMLDD 189
Query: 191 TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECV 250
+S +R+T+STSGV + L+ ++L V LA+SLHA +D R L+PLNKKY + +
Sbjct: 190 NAYGLSRRRVTLSTSGVVPMMDRLS-QDLPVALAVSLHASNDALRDVLVPLNKKYPLAEL 248
Query: 251 LNEVRKW-PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKF 309
+ R++ R + FEY ++ +NDS++ A++LL+++ + K NLI FNP S
Sbjct: 249 MAACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVVADVPCKFNLIPFNPFPESGL 308
Query: 310 ERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQL 348
+R + E R F+ L G++ TIR+++ DI+AACGQL
Sbjct: 309 KRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347
>ref|NP_246946.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK04091.1| (AE006237) unknown [Pasteurella multocida]
Length = 394
Score = 174 bits (440), Expect = 2e-42
Identities = 115/360 (31%), Positives = 194/360 (52%), Gaps = 31/360 (8%)
Query: 2 KASIYDFTLKELSQLLKP----SFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K ++ + T +++ + K FRA QL W+Y + +F +M N +K L++
Sbjct: 27 KINLMNLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNM-TNINKKLRDKLKQVA 85
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCV 117
++ E+ + S DG+ K+ +++ D+++ ET I E ++ T+CV
Sbjct: 86 EIKAPEVAVEQRSADGTIKWA--------------MQVGDQQV--ETVYIPEADRATLCV 129
Query: 118 SCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQ----ALLIKEDNNLPLEKALNIVFMGMG 173
S Q+GC + C+FC T + GF RNL SEII Q + +I + N+V MGMG
Sbjct: 130 SSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPITNVVMMGMG 189
Query: 174 EPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVD 231
EPL N+ V A+EI + +S +R+T+STSGV + L+ + + V LAISLHA +
Sbjct: 190 EPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLS-EMIDVALAISLHAPN 248
Query: 232 DKTRSSLMPLNKKYNIECVLNEVRKW---PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKL 288
D+ R ++P+NKKYNI+ +++ V ++ +V EY+++ +ND ++ A +L ++
Sbjct: 249 DELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAQV 308
Query: 289 LNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQL 348
L K+NLI +NP + + + S F L G +R+++ DI+AACGQL
Sbjct: 309 LKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDIDAACGQL 368
>ref|NP_438526.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44665|YFGB_HAEIN Hypothetical protein HI0365
pir||I64149 hypothetical protein HI0365 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22023.1| (U32720) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 390
Score = 173 bits (438), Expect = 3e-42
Identities = 117/360 (32%), Positives = 188/360 (51%), Gaps = 31/360 (8%)
Query: 2 KASIYDFTLKELSQLLKP----SFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREF 57
K ++ D T +++ + K FRA QL W+Y + +F +M N +K L+
Sbjct: 22 KINLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNM-TNINKKLREKLKAVA 80
Query: 58 ALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCV 117
++ E+ + S DG+ K+ M+ + ET I E ++ T+CV
Sbjct: 81 EIKAPEVAVEQRSADGTIKWA----------------MQVGEQQVETVYIPEADRATLCV 124
Query: 118 SCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQ----ALLIKEDNNLPLEKALNIVFMGMG 173
S Q+GC + C+FC T + GF RNL SEII Q + +I + N+V MGMG
Sbjct: 125 SSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPITNVVMMGMG 184
Query: 174 EPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVD 231
EPL N+ V A+EI + +S +R+T+STSGV + L+ K + V LAISLHA +
Sbjct: 185 EPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLS-KMIDVALAISLHAPN 243
Query: 232 DKTRSSLMPLNKKYNIECVLNEVRKW---PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKL 288
D+ R ++P+NKKYNI+ +++ V ++ +V EY+++ +ND ++ A +L ++
Sbjct: 244 DELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEV 303
Query: 289 LNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQL 348
L K+NLI +NP + + + S F L IR+++ DI+AACGQL
Sbjct: 304 LKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAACGQL 363
>ref|NP_337458.1| (NC_002755) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
sp|Q10806|YS80_MYCTU Hypothetical protein Rv2880c/Rv2879c
gb|AAK47272.1| (AE007118) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
Length = 364
Score = 168 bits (425), Expect = 1e-40
Identities = 116/347 (33%), Positives = 177/347 (50%), Gaps = 29/347 (8%)
Query: 13 LSQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVD 72
+++L P+FRAKQL Y + + M + + F +
Sbjct: 31 VAELGLPAFRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAGAMFPNLLTASADITCDAG 90
Query: 73 GSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFT 132
++K L++++ D FE+VL++ + TVC+S Q GC + C FC T
Sbjct: 91 QTRKTLWRAV-DGTMFESVLMRYPRRN--------------TVCISSQAGCGMACPFCAT 135
Query: 133 QKGGFVRNLKASEIIQQ----ALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCKAIEI 188
+GG RNL +EI++Q A +++D ++ N+VFMGMGEPL N V A++
Sbjct: 136 GQGGLTRNLSTAEILEQVRAGAAALRDDFG---DRLSNVVFMGMGEPLANYARVLAAVQR 192
Query: 189 FN----TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244
+G IS + +T+ST G+A I LA LGV LA+SLHA DD R +L+P+N +
Sbjct: 193 ITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLHAPDDGLRDTLVPVNNR 252
Query: 245 YNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDS---LDCAKKLLKLLNGIKSKVNLILF 301
+ I L+ R + +RV EY LI+D+ND D K L + G + VNLI
Sbjct: 253 WRISEALDAARYYANVTGRRVSIEYALIRDVNDQPWRADLLGKRLHRVLGPLAHVNLIPL 312
Query: 302 NPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQL 348
NP GS ++ R F + +KG+ CT+R+++ +I AACGQL
Sbjct: 313 NPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISAACGQL 359
>ref|NP_601225.1| (NC_003450) COG0820:Predicted Fe-S-cluster redox enzyme
[Corynebacterium glutamicum]
dbj|BAB99413.1| (AP005280) Predicted Fe-S-cluster redox enzyme [Corynebacterium
glutamicum ATCC 13032]
Length = 366
Score = 164 bits (414), Expect = 2e-39
Identities = 113/346 (32%), Positives = 167/346 (47%), Gaps = 22/346 (6%)
Query: 10 LKELSQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRE 69
++ L +L P FR Q+ Y + + M + + F + V
Sbjct: 30 IEALKELGLPKFRLNQIARHYYGRLEADPLTMTDLPEGARQEVKDALFPTLMSPLRVVET 89
Query: 70 SVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSF 129
D ++K L+K L D E+VL++ D+ T+C+S Q GC + C F
Sbjct: 90 DDDTTQKTLWK-LHDGTLLESVLMRYSDRS--------------TLCISSQAGCGMACPF 134
Query: 130 CFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCKAIEIF 189
C T +GG RNL EI+ Q + NIVFMGMGEPL N V A+
Sbjct: 135 CATGQGGLDRNLSIGEIVDQVRNAAATMQSEGGRLSNIVFMGMGEPLANYKRVVSAVRQI 194
Query: 190 N----TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKY 245
G IS + +T+ST G+A I LA + + V LA+SLH DD+ R +L+P+N ++
Sbjct: 195 TQPSPAGFGISQRSVTVSTVGLAPAIRKLADEEMSVTLAVSLHTPDDELRDTLVPVNNRW 254
Query: 246 NIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDS---LDCAKKLLKLLNGIKSKVNLILFN 302
+ VL+ R + + +RV EY LI+D+ND D + L G + VNLI N
Sbjct: 255 PVAEVLDAARYYADKSGRRVSIEYALIRDVNDQDWRADMLGEKLHKALGSRVHVNLIPLN 314
Query: 303 PHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQL 348
P GSK++ F + +KG+ CT+R++K +I AACGQL
Sbjct: 315 PTPGSKWDAAPKARQDEFVRRVIAKGVPCTVRDTKGQEIAAACGQL 360
>ref|NP_629775.1| (NC_003888) conserved hypothetical protein SC6A9.22c [Streptomyces
coelicolor A3(2)]
pir||T35453 hypothetical protein SC6A9.22c SC6A9.22c - Streptomyces coelicolor
emb|CAA19907.1| (AL031035) conserved hypothetical protein SC6A9.22c [Streptomyces
coelicolor A3(2)]
Length = 368
Score = 162 bits (410), Expect = 5e-39
Identities = 116/340 (34%), Positives = 174/340 (51%), Gaps = 30/340 (8%)
Query: 21 FRAKQL---YLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKY 77
FRAKQL Y YA + D+ + L E L T+ + H+ ++K
Sbjct: 42 FRAKQLSQHYFARYAHAPEQWTDIPAGSREGLREALLPE--LMTV-VRHLSTDQGTTRKT 98
Query: 78 LFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGF 137
L+K L D E+VL++ D+ T+C+S Q GC + C FC T + G
Sbjct: 99 LWK-LFDGTLVESVLMRYPDR--------------VTMCISSQAGCGMNCPFCATGQAGL 143
Query: 138 VRNLKASEIIQQ---ALLIKEDNNLPLEKAL--NIVFMGMGEPLNNLDEVCKAIEIFNT- 191
RNL +EI+ Q + D +P A NIVFMGMGEPL N + V AI
Sbjct: 144 DRNLSTAEIVHQIVDGMRALRDGEVPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDP 203
Query: 192 ---GMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIE 248
G+ +S + IT+ST G+ I G+ +LAISLHA DD+ R +L+P+N ++ +
Sbjct: 204 EPDGLGLSQRGITVSTVGLVPAIHRFTGEGFKCRLAISLHAPDDELRDTLVPVNTRWKVR 263
Query: 249 CVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSK 308
VL+ ++ + +R+ EY LI+D+ND +L +LL G VNLI NP GSK
Sbjct: 264 EVLDAGFEYAAKSGRRLSIEYALIRDINDQAWRGDRLGRLLRGRPVHVNLIPLNPTPGSK 323
Query: 309 FERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQL 348
+ E+ + F + + + G+ TIR+++ +I+ ACGQL
Sbjct: 324 WTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGACGQL 363
>ref|NP_218508.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
pir||D71371 conserved hypothetical protein TP0068 - syphilis spirochete
gb|AAC65061.1| (AE001191) conserved hypothetical protein [Treponema pallidum]
Length = 340
Score = 160 bits (406), Expect = 2e-38
Identities = 119/334 (35%), Positives = 170/334 (50%), Gaps = 30/334 (8%)
Query: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKYLFK 80
FR Q++ W+ A T F M ++ S + A L R + + VDG+ K L
Sbjct: 25 FRGVQVFRWIAAGC-TDFHAM-SDLSSETRARLARACVISDTRVYTTLRDVDGTLK-LGI 81
Query: 81 SLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140
L+D EAVLL + + + T C+SCQ+GC + C+FC T + GF RN
Sbjct: 82 ELKDKRRVEAVLL-------------VDQVSRKTACLSCQVGCPMACAFCQTGQLGFARN 128
Query: 141 LKASEIIQQALLIKEDNNLPLEKAL----NIVFMGMGEPLNNLDEVCKAIEIFN--TGMQ 194
L ASEI++Q L LE+ + N+VFMGMGEP+ NLD VC+AIEI + G
Sbjct: 129 LSASEIVEQFL--------HLERCVGTLDNVVFMGMGEPMLNLDAVCRAIEILSHPQGRD 180
Query: 195 ISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEV 254
+S KRITISTSG I LA + L V+LA+SL + R+ LMP ++ + + +
Sbjct: 181 LSEKRITISTSGHCRGIYSLADRALQVRLAVSLTTANAPLRARLMPRAAHDSLAKLKSAI 240
Query: 255 RKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSL 314
R + + KRV E L++ +N S A++++ +G+ VNLI +NP FE P
Sbjct: 241 RYFNEKSGKRVTLELALMRGVNTSERHAQEVIDFAHGLNVHVNLIPWNPVASIHFETPRE 300
Query: 315 ENARMFADFLNSKGLLCTIRESKALDIEAACGQL 348
F L + T R + I ACGQL
Sbjct: 301 VEVAHFEALLMRARIPVTRRYQRGNGIGGACGQL 334
>ref|NP_188597.1| (NM_112853) unknown protein [Arabidopsis thaliana]
Length = 372
Score = 155 bits (391), Expect = 9e-37
Identities = 99/299 (33%), Positives = 157/299 (52%), Gaps = 8/299 (2%)
Query: 53 LEREFALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREK 112
L +F T + + S DG+ L L++ EAV+++ + +
Sbjct: 55 LHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQNGAFVEAVVMRYDTRLGMLGGKPRPGGIR 114
Query: 113 YTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGM 172
T+C+S Q+GC++GC+FC T GF NL + EI++Q + + NIVFMGM
Sbjct: 115 STLCISSQVGCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASR-----IADIRNIVFMGM 169
Query: 173 GEPLNNLDEVCKAIEIF-NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVD 231
GEPLNN + V +A+ + N Q+SPKRITIST G+ I L GV LA+SLHA
Sbjct: 170 GEPLNNYNAVVEAVRVMLNQPFQLSPKRITISTVGIVHAINKLHNDLPGVSLAVSLHAPV 229
Query: 232 DKTRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNG 291
+ R +MP + + ++ +++ ++ + ++++ EY+++ +ND A L +LL
Sbjct: 230 QEIRCQIMPAARAFPLQKLMDALQTFQKNSQQKIFIEYIMLDGVNDQEQHAHLLGELLKT 289
Query: 292 IKSKVNLILFNP-HEGSKFERPSLENARMFADFL-NSKGLLCTIRESKALDIEAACGQL 348
+ +NLI FNP S+FE S++ F L + + TIR+ DI ACGQL
Sbjct: 290 FQVVINLIPFNPIGSTSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQDISGACGQL 348
>dbj|BAB02548.1| (AP000417) gb|AAF41683.1~gene_id:MMB12.10~similar to unknown
protein [Arabidopsis thaliana]
Length = 382
Score = 147 bits (370), Expect = 2e-34
Identities = 99/309 (32%), Positives = 157/309 (50%), Gaps = 18/309 (5%)
Query: 53 LEREFALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREK 112
L +F T + + S DG+ L L++ EAV+++ + +
Sbjct: 55 LHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQNGAFVEAVVMRYDTRLGMLGGKPRPGGIR 114
Query: 113 YTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFM-- 170
T+C+S Q+GC++GC+FC T GF NL + EI++Q + + NIVFM
Sbjct: 115 STLCISSQVGCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASR-----IADIRNIVFMLL 169
Query: 171 --------GMGEPLNNLDEVCKAIEIF-NTGMQISPKRITISTSGVADKIPILAGKNLGV 221
GMGEPLNN + V +A+ + N Q+SPKRITIST G+ I L GV
Sbjct: 170 PWFDDCDQGMGEPLNNYNAVVEAVRVMLNQPFQLSPKRITISTVGIVHAINKLHNDLPGV 229
Query: 222 QLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDC 281
LA+SLHA + R +MP + + ++ +++ ++ + ++++ EY+++ +ND
Sbjct: 230 SLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNSQQKIFIEYIMLDGVNDQEQH 289
Query: 282 AKKLLKLLNGIKSKVNLILFNP-HEGSKFERPSLENARMFADFL-NSKGLLCTIRESKAL 339
A L +LL + +NLI FNP S+FE S++ F L + + TIR+
Sbjct: 290 AHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQ 349
Query: 340 DIEAACGQL 348
DI ACGQL
Sbjct: 350 DISGACGQL 358
>ref|NP_250530.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||A83415 hypothetical protein PA1839 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG05228.1|AE004610_1 (AE004610) hypothetical protein [Pseudomonas aeruginosa]
Length = 346
Score = 139 bits (350), Expect = 5e-32
Identities = 88/280 (31%), Positives = 141/280 (49%), Gaps = 23/280 (8%)
Query: 72 DGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCF 131
DGS + L + L D E+VLL + +CVS Q+GC VGC FC
Sbjct: 75 DGSSRLLVE-LADRQMVESVLLP-----------------RGGLCVSTQVGCAVGCVFCM 116
Query: 132 TQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCKAIEIFNT 191
T + G +R + + E++ Q +L + + +VFMGMGEP +NLD V +AI++ T
Sbjct: 117 TGRSGLLRQVGSLEMVAQVVLARRRRAVK-----KVVFMGMGEPAHNLDNVLEAIDLLGT 171
Query: 192 GMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVL 251
I K + ST G L + + LA+SLH+ + R L+P + E ++
Sbjct: 172 DGGIGHKNLVFSTVGDPRVFERLPRQRVKPALALSLHSTRAELRRQLLPKAPPLSPEELV 231
Query: 252 NEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFER 311
+ + +++ L++ +NDSL+ +L+LL G + +NLI +N +G + R
Sbjct: 232 EAGEAYARRVDYPIQYQWTLLEGINDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDAYRR 291
Query: 312 PSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
PS E +L+S+G+L +R S DI+ CGQLR +
Sbjct: 292 PSGERIVELVRYLHSRGVLTKVRNSAGQDIDGGCGQLRAR 331
>emb|CAC04525.1| (AJ249217) florfenicol resistance protein [Staphylococcus sciuri]
Length = 349
Score = 122 bits (305), Expect = 8e-27
Identities = 101/340 (29%), Positives = 156/340 (45%), Gaps = 28/340 (8%)
Query: 18 KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKY 77
+P +R KQ+ ++ + + F+DM+ K L F + I + E
Sbjct: 21 EPDYRIKQITNAIFKQRISRFEDMKV-LPKLLREDLINNFGETVLNIKLLAEQNSEQVTK 79
Query: 78 LFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGF 137
+ + N E V +K K + C+S Q GC GC FC T G
Sbjct: 80 VLFEVSKNERVETVNMKYK-------------AGWESFCISSQCGCNFGCKFCATGDIGL 126
Query: 138 VRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCKAIEIFNTG--MQI 195
+NL EI Q L +L + +I FMGMGE L N +V A++ F +
Sbjct: 127 KKNLTVDEITDQVLYF----HLLGHQIDSISFMGMGEALANR-QVFDALDSFTDPNLFAL 181
Query: 196 SPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVR 255
SP+R++IST G+ I + + V L SLH+ + RS LMP+N +Y I+ V+N +
Sbjct: 182 SPRRLSISTIGIIPSIKKITQEYPQVNLTFSLHSPYSEERSKLMPINDRYPIDEVMNILD 241
Query: 256 KWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLL-----NGIKSKVNLILFNP--HEGSK 308
+ ++V Y+++ +NDSL+ A +++ LL +G VNLI +NP
Sbjct: 242 EHIRLTSRKVYIAYIMLPGVNDSLEHANEVVSLLKSRYKSGKLYHVNLIRYNPTISAPEM 301
Query: 309 FERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQL 348
+ + F L S G+ TIR +DI+AACGQL
Sbjct: 302 YGEANEGQVEAFYKVLKSAGIHVTIRSQFGIDIDAACGQL 341
>ref|NP_217395.1| (NC_000962) hypothetical protein Rv2879c [Mycobacterium
tuberculosis H37Rv]
pir||B70924 conserved hypothetical protein HI0365 truncated homolog 2 -
Mycobacterium tuberculosis (strain H37RV)
emb|CAA98355.1| (Z74024) hypothetical protein Rv2879c [Mycobacterium tuberculosis
H37Rv]
Length = 189
Score = 115 bits (287), Expect = 1e-24
Identities = 71/183 (38%), Positives = 101/183 (54%), Gaps = 7/183 (3%)
Query: 173 GEPLNNLDEVCKAIEIFN----TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLH 228
GEPL N V A++ +G IS + +T+ST G+A I LA LGV LA+SLH
Sbjct: 2 GEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLH 61
Query: 229 AVDDKTRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDS---LDCAKKL 285
A DD R +L+P+N ++ I L+ R + +RV EY LI+D+ND D K
Sbjct: 62 APDDGLRDTLVPVNNRWRISEALDAARYYANVTGRRVSIEYALIRDVNDQPWRADLLGKR 121
Query: 286 LKLLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAAC 345
L + G + VNLI NP GS ++ R F + +KG+ CT+R+++ +I AAC
Sbjct: 122 LHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISAAC 181
Query: 346 GQL 348
GQL
Sbjct: 182 GQL 184
>ref|NP_214053.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||F70432 conserved hypothetical protein aq_1528 - Aquifex aeolicus
gb|AAC07456.1| (AE000744) hypothetical protein [Aquifex aeolicus]
Length = 270
Score = 110 bits (276), Expect = 2e-23
Identities = 85/248 (34%), Positives = 132/248 (52%), Gaps = 18/248 (7%)
Query: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMG 173
T+CVS Q+GC V C+FC + K G RNL A EI Q L+K+ P+++ I G+G
Sbjct: 34 TLCVSTQVGCPVRCTFCASGKNGLFRNLSAEEIYNQYELLKD--RYPIKR---IAVAGIG 88
Query: 174 EPLNNLDEVCKAIEIF-NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDD 232
EPL+N V +A E F G+++S T + + +L + GV ISLH+++D
Sbjct: 89 EPLSNWRNVKEAFEKFKKEGLKVSFYTTGFPTKHLRE---LLHLPHSGV--TISLHSLND 143
Query: 233 KTRSSLMPLNKKYN--IECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN 290
+TR LMP K I+ + E+ K ++RK+V Y+L+KD+NDS + +KL +L
Sbjct: 144 ETRKYLMPHAGKLEEVIKVLEEELPKLSSKKRKKVSLAYILLKDVNDSQEELEKLAELAK 203
Query: 291 GIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQL-- 348
+ + L+ +N + +FE S + FL SKG+ T+ D CG L
Sbjct: 204 RLGVSITLLYYN--KTFEFEPVSEKEYEEAFLFLRSKGVRVTLSTRFRKDKLGGCGTLVV 261
Query: 349 -REKKLSQ 355
R K+L++
Sbjct: 262 NRNKELTK 269
>ref|NP_078047.1| (NC_002162) conserved hypothetical [Ureaplasma urealyticum]
pir||H82920 conserved hypothetical UU214 [imported] - Ureaplasma urealyticum
gb|AAF30622.1|AE002120_14 (AE002120) conserved hypothetical [Ureaplasma urealyticum]
Length = 336
Score = 93.6 bits (231), Expect = 3e-18
Identities = 88/357 (24%), Positives = 168/357 (46%), Gaps = 40/357 (11%)
Query: 5 IYDFTLKELSQLL----KPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALR 60
IY +L EL + L SF +KQ+Y W+Y K +F D +N +K+ + L+ F+
Sbjct: 11 IYSLSLNELKEELFKLGLKSFISKQIYSWIYQKRIFNF-DKFSNIAKNNVIILKENFSNN 69
Query: 61 TIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQ 120
++I + + DGS K+ F + + N +++K K+ +++ + + +
Sbjct: 70 LLKINSYQSNSDGSIKFEFLTDK-NLIINCMIIKFKN-------GFLIKINPFGINFKKE 121
Query: 121 IGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED-NNLPLEKALNIVFMGMGEPLNNL 179
I NL +E++ Q LLI++ + L N++ G+ + L N+
Sbjct: 122 I-----------------INLSTNELVLQILLIQQFLDQRKLGNITNVIIKGLQDSLLNM 164
Query: 180 DEVCKAIEIFNT--GMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSS 237
D V I I N G+ I ++I + TSG+ + ++L IS++A +
Sbjct: 165 DVVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNASNSLIYQK 224
Query: 238 LM--PLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSK 295
+M LN+ ++ ++ +++ + RV+ EYLLI +ND L+ A +L++LL I
Sbjct: 225 IMLKKLNQNWSFLKLIEQIKAYTKITNNRVVLEYLLIDKINDDLNYANELVELLKNILCY 284
Query: 296 VNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKK 352
V LI +N + + N F + L+ + + R K+ D++ + QL+ K+
Sbjct: 285 VLLIPYNLN-----NYRTSANLDDFFNILSVNKIRISKRIRKSNDLDISFKQLKIKE 336
>emb|CAB60749.1| (Y18639) hypothetical protein [Staphylococcus aureus]
Length = 133
Score = 90.5 bits (223), Expect = 3e-17
Identities = 48/127 (37%), Positives = 73/127 (56%)
Query: 226 SLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKL 285
SLHA D+ RS LMP+N+ YN+E ++ ++ + + +RV FEY L +ND L+ A++L
Sbjct: 1 SLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYGLFGGVNDQLEHAREL 60
Query: 286 LKLLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAAC 345
L+ G+ VNLI N + + + + F L G+ TIR + DI+AAC
Sbjct: 61 AHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAAC 120
Query: 346 GQLREKK 352
GQLR K+
Sbjct: 121 GQLRAKE 127
>ref|NP_227951.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||F72413 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35229.1|AE001699_6 (AE001699) conserved hypothetical protein [Thermotoga maritima]
Length = 329
Score = 67.8 bits (164), Expect = 2e-10
Identities = 74/269 (27%), Positives = 123/269 (45%), Gaps = 30/269 (11%)
Query: 111 EKYTVCVSCQIGCQVGCSFCFTQKGGFVRN-LKASEIIQQA-LLIKE---DNNLPLEKAL 165
+K+ + VS GC VGC C GGF R L A EI +Q L+K + +P EK
Sbjct: 58 KKWVLIVSTLAGCPVGCLMC--DAGGFYRGKLSADEIFEQIDFLVKSRYPNGRIPSEK-F 114
Query: 166 NIVFMGMGEPLNN--LDEVCKAIEIFNTGMQISPKRITISTSGV----ADKIPILAGKNL 219
I F MGEP N + +V K + + P T++ G D + I
Sbjct: 115 KIQFARMGEPALNEAVLDVLKELPARYEAPGLMPSISTVAPCGTDSFFEDLLKIKEKHYR 174
Query: 220 G-VQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDS 278
G QL S+H+ D+K R ++P+ KK+++E + +++ E +++ + + ++ S
Sbjct: 175 GKFQLQFSIHSTDEKERDQIIPV-KKWSLEKISEFGKRFVKENDRKITLNFAVAQEY--S 231
Query: 279 LDCAKKLLKLLNGIKSKVNLILFNPHEGSK---------FERPSLENARMFADFLNSKG- 328
LD K ++++ + K V + NP SK ER L R F + L G
Sbjct: 232 LD-PKVIIRVFDPEKFLVKITPVNPTYRSKENNLNSDVDVERKELLKHRNFIEELKKAGF 290
Query: 329 -LLCTIRESKALDIEAACGQLREKKLSQQ 356
++ +I E + I + CGQ ++ L +
Sbjct: 291 EVILSIGELEENKIGSNCGQYVQRHLMSE 319
>ref|NP_217396.1| (NC_000962) hypothetical protein Rv2880c [Mycobacterium
tuberculosis H37Rv]
pir||C70924 conserved hypothetical protein HI0365 truncated homolog 1 -
Mycobacterium tuberculosis (strain H37RV)
emb|CAA98356.1| (Z74024) hypothetical protein Rv2880c [Mycobacterium tuberculosis
H37Rv]
Length = 275
Score = 60.1 bits (144), Expect = 4e-08
Identities = 46/165 (27%), Positives = 77/165 (45%), Gaps = 22/165 (13%)
Query: 13 LSQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVD 72
+++L P+FRAKQL Y + + M + + F +
Sbjct: 31 VAELGLPAFRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAGAMFPNLLTASADITCDAG 90
Query: 73 GSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFT 132
++K L++++ D FE+VL++ + TVC+S Q GC + C FC T
Sbjct: 91 QTRKTLWRAV-DGTMFESVLMRYPRRN--------------TVCISSQAGCGMACPFCAT 135
Query: 133 QKGGFVRNLKASEIIQQ----ALLIKEDNNLPLEKALNIVFMGMG 173
+GG RNL +EI++Q A +++D ++ N+VFMGMG
Sbjct: 136 GQGGLTRNLSTAEILEQVRAGAAALRDDFG---DRLSNVVFMGMG 177
>ref|NP_247067.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q57567|Y103_METJA Hypothetical protein MJ0103
pir||G64312 hypothetical protein MJ0103 - Methanococcus jannaschii
gb|AAB98083.1| (U67467) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 433
Score = 42.7 bits (99), Expect = 0.006
Identities = 47/213 (22%), Positives = 98/213 (45%), Gaps = 22/213 (10%)
Query: 107 ILEREKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLI---KEDNNLPLEK 163
++ER + + V GC + C FC +G F + K + LI K+ + K
Sbjct: 102 LIERGRNIIQVRGHCGCNLNCIFCSVDEGEFSKTRKNDYYVDLEYLIENYKKIVDFKENK 161
Query: 164 ALNIVFMGMGEP---LNNLDEVCKAIEIFNTGMQISPKRITISTSGVADKIPIL-----A 215
+ G GEP +D V + EI G I +++ T+G ++ A
Sbjct: 162 FIEAHLDGQGEPSLYYPLVDLVQELAEINKKGNGI----VSMQTNGTVLNYKLIDELEEA 217
Query: 216 GKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDL 275
G + ++ +S++A+D+K + ++ + YNI+ +L ++ ++ + ++ LL+ ++
Sbjct: 218 GLH---RINLSINALDEK-MAKMLSGRRDYNIKKIL-DIAEYIKNSKIHLLIAPLLLPNI 272
Query: 276 NDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSK 308
ND + K++++ ++ K + NP G K
Sbjct: 273 ND--EEFKRVIEYAVDLEQKNPQNIINPLTGKK 303
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.137 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,079,021
Number of Sequences: 1026957
Number of extensions: 8381003
Number of successful extensions: 20767
Number of sequences better than 1.0e-02: 69
Number of HSP's better than 0.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 20443
Number of HSP's gapped (non-prelim): 70
length of query: 357
length of database: 324,149,939
effective HSP length: 122
effective length of query: 235
effective length of database: 198,861,185
effective search space: 46732378475
effective search space used: 46732378475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 98 (42.4 bits)