BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646045|ref|NP_208227.1| hypothetical protein
[Helicobacter pylori 26695]
         (82 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208227.1|  (NC_000915) hypothetical protein [Helicoba...   172  7e-43
ref|NP_224047.1|  (NC_000921) putative [Helicobacter pylori ...   155  7e-38

>ref|NP_208227.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64699 hypothetical protein HP1436 - Helicobacter pylori (strain 26695)
 gb|AAD08488.1| (AE000644) H. pylori predicted coding region HP1436 [Helicobacter
          pylori 26695]
          Length = 82

 Score =  172 bits (436), Expect = 7e-43
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 1  MACKFCPKIRKTDWIFILIAALGFYAVNKLGYVPQFNTPTSKISRSIEKPDNMTEEERKK 60
          MACKFCPKIRKTDWIFILIAALGFYAVNKLGYVPQFNTPTSKISRSIEKPDNMTEEERKK
Sbjct: 1  MACKFCPKIRKTDWIFILIAALGFYAVNKLGYVPQFNTPTSKISRSIEKPDNMTEEERKK 60

Query: 61 RFIELQKACLLHKDKKACEEVF 82
          RFIELQKACLLHKDKKACEEVF
Sbjct: 61 RFIELQKACLLHKDKKACEEVF 82



>ref|NP_224047.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71819 hypothetical protein jhp1329 - Helicobacter pylori (strain J99)
 gb|AAD06905.1| (AE001556) putative [Helicobacter pylori J99]
          Length = 86

 Score =  155 bits (393), Expect = 7e-38
 Identities = 75/86 (87%), Positives = 79/86 (91%), Gaps = 4/86 (4%)

Query: 1  MACKFCPKIRKTDWIFILIAALGFYAVNKLGYVPQFNTPTSK----ISRSIEKPDNMTEE 56
          MACKFCPKIRKTDWIFILIAALGFY+VNKLGY P+FNTPT K    +SR IEKP+NMTEE
Sbjct: 1  MACKFCPKIRKTDWIFILIAALGFYSVNKLGYAPKFNTPTPKSSRPLSRPIEKPNNMTEE 60

Query: 57 ERKKRFIELQKACLLHKDKKACEEVF 82
          ERKKRFIELQKACLLHKDKKACEEVF
Sbjct: 61 ERKKRFIELQKACLLHKDKKACEEVF 86



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.324    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,830,674
Number of Sequences: 1026957
Number of extensions: 1736089
Number of successful extensions: 7151
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7148
Number of HSP's gapped (non-prelim): 2
length of query: 82
length of database: 324,149,939
effective HSP length: 58
effective length of query: 24
effective length of database: 264,586,433
effective search space: 6350074392
effective search space used: 6350074392
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 90 (39.3 bits)