BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646046|ref|NP_208228.1| hypothetical protein
[Helicobacter pylori 26695]
(239 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208228.1| (NC_000915) hypothetical protein [Helicoba... 470 e-132
ref|NP_224048.1| (NC_000921) putative [Helicobacter pylori ... 245 3e-64
sp|P28561|APCE_AGLNE PHYCOBILISOME LINKER POLYPEPTIDE (ANCH... 42 0.006
>ref|NP_208228.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64699 hypothetical protein HP1437 - Helicobacter pylori (strain 26695)
gb|AAD08485.1| (AE000644) H. pylori predicted coding region HP1437 [Helicobacter
pylori 26695]
Length = 239
Score = 470 bits (1210), Expect = e-132
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 MSENIKGKYIMKAFKVDLDSSENQSILKPSARSSNNQAHQVDETAKKIDKLIKNAPYSND 60
MSENIKGKYIMKAFKVDLDSSENQSILKPSARSSNNQAHQVDETAKKIDKLIKNAPYSND
Sbjct: 1 MSENIKGKYIMKAFKVDLDSSENQSILKPSARSSNNQAHQVDETAKKIDKLIKNAPYSND 60
Query: 61 DIVLNHNKIKEAFFSPFKPQLKNAQVFLSHSHADRNKALEVKDYLESQTKRKVFIDSLFW 120
DIVLNHNKIKEAFFSPFKPQLKNAQVFLSHSHADRNKALEVKDYLESQTKRKVFIDSLFW
Sbjct: 61 DIVLNHNKIKEAFFSPFKPQLKNAQVFLSHSHADRNKALEVKDYLESQTKRKVFIDSLFW 120
Query: 121 DYKDDVLNKLARYDDISKIEDAFTLILRESLQDMIEKCPYFVFLQSSNSVSFNQNLLKIT 180
DYKDDVLNKLARYDDISKIEDAFTLILRESLQDMIEKCPYFVFLQSSNSVSFNQNLLKIT
Sbjct: 121 DYKDDVLNKLARYDDISKIEDAFTLILRESLQDMIEKCPYFVFLQSSNSVSFNQNLLKIT 180
Query: 181 YSAWIYEELKIAHSISKGYLTLSFEQEQGLEIKIENDISLFLKSFKTITLNELSQQINL 239
YSAWIYEELKIAHSISKGYLTLSFEQEQGLEIKIENDISLFLKSFKTITLNELSQQINL
Sbjct: 181 YSAWIYEELKIAHSISKGYLTLSFEQEQGLEIKIENDISLFLKSFKTITLNELSQQINL 239
>ref|NP_224048.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71819 hypothetical protein jhp1330 - Helicobacter pylori (strain J99)
gb|AAD06906.1| (AE001556) putative [Helicobacter pylori J99]
Length = 187
Score = 245 bits (625), Expect = 3e-64
Identities = 128/186 (68%), Positives = 148/186 (78%), Gaps = 6/186 (3%)
Query: 11 MKAFKVDLDSSENQSILKPSARSSNN----QAHQVDETAKKIDKLIKNAPYSNDDIVLNH 66
M+ + +D D+ + R+SN+ ++D A+KI ++K S DI+L H
Sbjct: 1 METYIIDADNIDGDLFFYNLTRNSNDFSMLPVFELDRIAQKIRNILKKHG-SRKDIILKH 59
Query: 67 NKIKEAFFSPFKPQLKNAQVFLSHSHADRNKALEVKDYLESQTKRKVFIDSLFWDYKDDV 126
N+IKEAFFSPFKPQLK QVFLSHSHAD+NKAL VKDYLES+TKRKVFIDSLFWDYKDDV
Sbjct: 60 NEIKEAFFSPFKPQLKTVQVFLSHSHADKNKALGVKDYLESKTKRKVFIDSLFWDYKDDV 119
Query: 127 LNKLARYDDISKIEDAFTLILRESLQDMIEKCPYFVFLQSSNSVSFNQNLLKITYSAWIY 186
LNKLA++DDISKIEDAFTLILR+SLQDMIEKCPYFVFLQS NSVS NQ L +ITYSAWIY
Sbjct: 120 LNKLAKHDDISKIEDAFTLILRKSLQDMIEKCPYFVFLQSKNSVS-NQGLSRITYSAWIY 178
Query: 187 EELKIA 192
EELKIA
Sbjct: 179 EELKIA 184
>sp|P28561|APCE_AGLNE PHYCOBILISOME LINKER POLYPEPTIDE (ANCHOR POLYPEPTIDE) (PBS-ANCHOR
PROTEIN)
pir||S20621 phycobilisome anchor protein apcE - red alga (Aglaothamnion
neglectum) chloroplast
pir||S61554 anchor protein - red alga (Aglaothamnion neglectum) chloroplast
emb|CAA77957.1| (Z11905) anchor polypeptide [Aglaothamnion neglectum]
Length = 885
Score = 42.0 bits (97), Expect = 0.006
Identities = 41/173 (23%), Positives = 72/173 (40%), Gaps = 38/173 (21%)
Query: 95 RNKALEVKDYLESQTKRKVFIDSLFWDYKDDVLNKLARYDDI----------SKIEDAFT 144
R+ + V+D++ + K VF SL+W+ + K Y +I F
Sbjct: 561 RSSKISVRDFIRNLVKSSVF-RSLYWEPL--YICKAIEYIHYRLLGRPSYGRQEINQYFD 617
Query: 145 LILRESLQDMIE---------------KCPYFVFLQSSNSVSFNQNLLKITYSAWIYEEL 189
++ RE MI+ PY ++ S+N + LK YS ++Y L
Sbjct: 618 IVYREGYYKMIDYLLNSSEYIRSFGDNTVPYERYITSANMI------LKSNYSNFLYSTL 671
Query: 190 KIAHSISKGYLTLSFEQEQ----GLEIKIENDISLFLKSFKTITLNELSQQIN 238
K +S SK ++ LS E+ ++ +I +S +K L +LS Q++
Sbjct: 672 KTKNSNSKKFIELSNILEKRSLNSIQARISQGVSTVRDQYKVFQLTQLSSQVD 724
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.316 0.132 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,117,241
Number of Sequences: 1026957
Number of extensions: 5311642
Number of successful extensions: 17478
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17475
Number of HSP's gapped (non-prelim): 3
length of query: 239
length of database: 324,149,939
effective HSP length: 118
effective length of query: 121
effective length of database: 202,969,013
effective search space: 24559250573
effective search space used: 24559250573
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 95 (41.2 bits)