BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646047|ref|NP_208229.1| conserved hypothetical
lipoprotein [Helicobacter pylori 26695]
(338 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208229.1| (NC_000915) conserved hypothetical lipopro... 675 0.0
ref|NP_224049.1| (NC_000921) putative [Helicobacter pylori ... 73 4e-12
ref|NP_207674.1| (NC_000915) hypothetical protein [Helicoba... 49 8e-05
ref|NP_378112.1| (NC_003106) 584aa long hypothetical bps2 p... 47 3e-04
emb|CAB39037.2| (AL034559) hypothetical protein, PFC0960c [... 46 7e-04
ref|NP_473326.1| (NC_000521) predicted using hexExon; MAL3P... 46 7e-04
gb|AAK15625.1|AF323442_1 (AF323442) 235 kDa rhoptry protein... 45 0.001
gb|AAC84045.1| (AF091804) M protein [Streptococcus pyogenes] 44 0.002
pir||T18352 protein P120 - Mycoplasma hominis >gi|805101|gb... 44 0.002
ref|XP_057107.2| (XM_057107) KIAA1937 protein [Homo sapiens] 44 0.003
dbj|BAA20832.2| (AB002376) KIAA0378 [Homo sapiens] 43 0.004
gb|AAD33718.1|AF136711_1 (AF136711) myosin heavy chain [Amo... 43 0.004
>ref|NP_208229.1| (NC_000915) conserved hypothetical lipoprotein [Helicobacter pylori
26695]
pir||F64699 conserved hypothetical lipoprotein HP1438 - Helicobacter pylori
(strain 26695)
gb|AAD08478.1| (AE000644) conserved hypothetical lipoprotein [Helicobacter pylori
26695]
Length = 338
Score = 675 bits (1742), Expect = 0.0
Identities = 338/338 (100%), Positives = 338/338 (100%)
Query: 1 MFFKTYQKLLGASCLTLYLAGCGSDSSEPLVGIEKNSFNSTVKIISKTDNIEIQDLKLNR 60
MFFKTYQKLLGASCLTLYLAGCGSDSSEPLVGIEKNSFNSTVKIISKTDNIEIQDLKLNR
Sbjct: 1 MFFKTYQKLLGASCLTLYLAGCGSDSSEPLVGIEKNSFNSTVKIISKTDNIEIQDLKLNR 60
Query: 61 GNCEHDQNFLVKLIQETANTYLFASEKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDK 120
GNCEHDQNFLVKLIQETANTYLFASEKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDK
Sbjct: 61 GNCEHDQNFLVKLIQETANTYLFASEKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDK 120
Query: 121 LLENGGLFVSGHDYKYTKDDNPIYVVKRMLDNLDSYKYESDDVLDVPYEKLLEISIAIED 180
LLENGGLFVSGHDYKYTKDDNPIYVVKRMLDNLDSYKYESDDVLDVPYEKLLEISIAIED
Sbjct: 121 LLENGGLFVSGHDYKYTKDDNPIYVVKRMLDNLDSYKYESDDVLDVPYEKLLEISIAIED 180
Query: 181 TKNPKDYPYINLKELKKLIDSIIDDHGYMADGFLNEYSNRVSKKGLQILAKLKSMWPSVG 240
TKNPKDYPYINLKELKKLIDSIIDDHGYMADGFLNEYSNRVSKKGLQILAKLKSMWPSVG
Sbjct: 181 TKNPKDYPYINLKELKKLIDSIIDDHGYMADGFLNEYSNRVSKKGLQILAKLKSMWPSVG 240
Query: 241 KFYFASLKEAIPRHAKEVTDKMISSEEKSIKANQVKLTEAKQDIDKMEKIIKDLESKKNT 300
KFYFASLKEAIPRHAKEVTDKMISSEEKSIKANQVKLTEAKQDIDKMEKIIKDLESKKNT
Sbjct: 241 KFYFASLKEAIPRHAKEVTDKMISSEEKSIKANQVKLTEAKQDIDKMEKIIKDLESKKNT 300
Query: 301 LSVYLKFGESFTAHYKCQNLIEVGVKTDKGSWTFNFNR 338
LSVYLKFGESFTAHYKCQNLIEVGVKTDKGSWTFNFNR
Sbjct: 301 LSVYLKFGESFTAHYKCQNLIEVGVKTDKGSWTFNFNR 338
>ref|NP_224049.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71820 hypothetical protein jhp1331 - Helicobacter pylori (strain J99)
gb|AAD06907.1| (AE001556) putative [Helicobacter pylori J99]
Length = 161
Score = 73.2 bits (178), Expect = 4e-12
Identities = 51/122 (41%), Positives = 68/122 (54%), Gaps = 23/122 (18%)
Query: 1 MFFKTYQKLLGASCLTLYLAGCGS-DSSEPLVGIEKNSFNSTVKIISKTDNIEIQDLKLN 59
MFFKTYQKLLGASCL LYL GCG+ E V + NS T +I SK D+I IQ +KLN
Sbjct: 1 MFFKTYQKLLGASCLALYLVGCGNGGGGESPVEMIANS-EGTFQIDSKADSITIQGVKLN 59
Query: 60 RGNCEHDQNFL------------------VKLIQETANTYLFASEKEKAIKNHQAKIARL 101
RGNC NF+ ++ ++ A+TY +K K + N KI++L
Sbjct: 60 RGNCA--VNFVPVSETFQMGVLSQVTPISIQDFKDMASTYKIFDQK-KGLANIANKISQL 116
Query: 102 QK 103
++
Sbjct: 117 EQ 118
Score = 45.4 bits (106), Expect = 0.001
Identities = 26/77 (33%), Positives = 42/77 (53%), Gaps = 1/77 (1%)
Query: 263 ISSEEKSIKANQVKLTEAKQDIDKMEKIIKDLESKKNTLSVY-LKFGESFTAHYKCQNLI 321
IS ++ A+ K+ + K+ + + I LE K + L FGES + N+I
Sbjct: 85 ISIQDFKDMASTYKIFDQKKGLANIANKISQLEQKGVMMEPQTLNFGESLKGISQGCNII 144
Query: 322 EVGVKTDKGSWTFNFNR 338
E ++TDKG+WTFNF++
Sbjct: 145 EAEIQTDKGAWTFNFDK 161
>ref|NP_207674.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64629 hypothetical protein HP0880 - Helicobacter pylori (strain 26695)
gb|AAD07928.1| (AE000597) H. pylori predicted coding region HP0880 [Helicobacter
pylori 26695]
Length = 140
Score = 48.9 bits (115), Expect = 8e-05
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 19/115 (16%)
Query: 10 LGASCLTLYLAGCGSDSSEPLVGIEKNSFNSTVKIISKTDNIEIQDLKLNRGNCEHD--- 66
LG +L A G D + P IE + + IISKTD+IEIQD++ NR NC H
Sbjct: 17 LGKGLNSLISAWRGKDDAIP---IETRLHKNKLTIISKTDSIEIQDIQFNRENCSHTYTS 73
Query: 67 -------------QNFLVKLIQETANTYLFASEKEKAIKNHQAKIARLQKDLEEL 108
+ + +L +E ++ +K I+ +Q KIA QK +++
Sbjct: 74 KDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDI 128
>ref|NP_378112.1| (NC_003106) 584aa long hypothetical bps2 protein [Sulfolobus
tokodaii]
dbj|BAB67221.1| (AP000988) 584aa long hypothetical bps2 protein [Sulfolobus
tokodaii]
Length = 584
Score = 47.0 bits (110), Expect = 3e-04
Identities = 61/271 (22%), Positives = 111/271 (40%), Gaps = 56/271 (20%)
Query: 50 NIEIQDLKLNRGNCEHDQNFLVKLIQETANTYLFA--SEKEKAIKNHQAKIARLQKDLEE 107
N EI L+ R N + + + L ++ T L + ++K ++++QA++ +L K++EE
Sbjct: 172 NEEIDKLERERKNLQKNAAQTIILTRQNRLTELKSRVETRQKELRDNQARLEKLDKEIEE 231
Query: 108 LTQHVQQS---------NNLDKLLENGGLFVSGHDYKYTKDDNPIYVVKRMLDNLDSYKY 158
L Q Q+ LDK L+ K D I V+ R+LD + +
Sbjct: 232 LKQKADQTLKEKIRSELTELDKKLQE-------LSSKKNSIDIEIGVLNRVLDEIKESEK 284
Query: 159 ESDDVLDVPYEKLLEISIAIEDTKNPKDYPYINLKELKKLIDSIIDDHGYMADGFLNEYS 218
E V V K+ +P + K +I +++ + L E +
Sbjct: 285 EHASVCHVCGSKV-----------DPSIW-----KTRMDIISKELENANRSKNELLTELN 328
Query: 219 NRVSKKGLQILAKLKSMWPSVGKFYFASLKEAIPRHAKEVTDKMISSEEKSIKANQVKLT 278
+ +++K ++ AK+K I + K + +K I E +IK +K
Sbjct: 329 STIARKN-ELEAKIKE----------------IEKAEKMLAEKQIQRENLAIKIETIK-- 369
Query: 279 EAKQDIDKMEKIIKDLESKKNTLSVYLKFGE 309
I + E+ IK+LE K N ++ GE
Sbjct: 370 ---HQIAEYERQIKELEEKINEINEIYSMGE 397
>emb|CAB39037.2| (AL034559) hypothetical protein, PFC0960c [Plasmodium falciparum 3D7]
Length = 1946
Score = 45.8 bits (107), Expect = 7e-04
Identities = 70/302 (23%), Positives = 123/302 (40%), Gaps = 35/302 (11%)
Query: 28 EPLVGIEKNSFNSTVKIISKTDNIEIQDLKLNRGNCEHDQNFLVKLIQETANTYLFASEK 87
E L+ EK VK+I + I++ KL+ +N L + + N E
Sbjct: 1327 ETLLKNEKEISTENVKLIETNKTLYIENEKLSNDL----KNTLKEKEKIQENYNKINKEH 1382
Query: 88 EKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLLENGGLFVSGHDYKYTKDDNPIYVVK 147
K I+ Q+ +K ++E+TQ +Q +NLDK + + + + Y K+ N +
Sbjct: 1383 IKIIEELQSYKEIKEKHMKEITQIKEQIHNLDKHIAQIQIEKNNFEESYLKEKNENEKMS 1442
Query: 148 RMLDNLDSYKYESDDVLDVPYEKLLEISIAIEDTKNPKDYPYI-------NLKELKKLID 200
+L+ + YK S +D K I IED + K+ + NLKE K++
Sbjct: 1443 NILE--EKYKELSTYEIDKNINK-----IKIEDLEKDKENILLTKNEEINNLKEEYKMVQ 1495
Query: 201 SIIDDHGYM-------ADGFLNEYSN------RVSKKGLQILAKLKSMWPSVGKFYFASL 247
++D + D E +N ++ K ++ KLK +
Sbjct: 1496 QHLEDTNVLYEKQKLAIDTITKEKNNIINECDKIKNKNKKLNNKLKENQNNYEHTLNNIK 1555
Query: 248 KE---AIPRHAKEVTDKMISSEEKSIKANQVKLTEAKQDIDKMEKIIKDLESKKNTLSVY 304
KE I R K T K + S E + K + +L + +++ + K +K++ T S
Sbjct: 1556 KENQQIIEREKKNFTQK-VESLEHAFKQSYNQLKDQNENLQQQIKQLKNVNQDIKTNSKN 1614
Query: 305 LK 306
LK
Sbjct: 1615 LK 1616
>ref|NP_473326.1| (NC_000521) predicted using hexExon; MAL3P7.21 (PFC0960c),
Hypothetical protein, len: 1929 aa [Plasmodium
falciparum]
Length = 1928
Score = 45.8 bits (107), Expect = 7e-04
Identities = 70/302 (23%), Positives = 123/302 (40%), Gaps = 35/302 (11%)
Query: 28 EPLVGIEKNSFNSTVKIISKTDNIEIQDLKLNRGNCEHDQNFLVKLIQETANTYLFASEK 87
E L+ EK VK+I + I++ KL+ +N L + + N E
Sbjct: 1327 ETLLKNEKEISTENVKLIETNKTLYIENEKLSNDL----KNTLKEKEKIQENYNKINKEH 1382
Query: 88 EKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLLENGGLFVSGHDYKYTKDDNPIYVVK 147
K I+ Q+ +K ++E+TQ +Q +NLDK + + + + Y K+ N +
Sbjct: 1383 IKIIEELQSYKEIKEKHMKEITQIKEQIHNLDKHIAQIQIEKNNFEESYLKEKNENEKMS 1442
Query: 148 RMLDNLDSYKYESDDVLDVPYEKLLEISIAIEDTKNPKDYPYI-------NLKELKKLID 200
+L+ + YK S +D K I IED + K+ + NLKE K++
Sbjct: 1443 NILE--EKYKELSTYEIDKNINK-----IKIEDLEKDKENILLTKNEEINNLKEEYKMVQ 1495
Query: 201 SIIDDHGYM-------ADGFLNEYSN------RVSKKGLQILAKLKSMWPSVGKFYFASL 247
++D + D E +N ++ K ++ KLK +
Sbjct: 1496 QHLEDTNVLYEKQKLAIDTITKEKNNIINECDKIKNKNKKLNNKLKENQNNYEHTLNNIK 1555
Query: 248 KE---AIPRHAKEVTDKMISSEEKSIKANQVKLTEAKQDIDKMEKIIKDLESKKNTLSVY 304
KE I R K T K + S E + K + +L + +++ + K +K++ T S
Sbjct: 1556 KENQQIIEREKKNFTQK-VESLEHAFKQSYNQLKDQNENLQQQIKQLKNVNQDIKTNSKN 1614
Query: 305 LK 306
LK
Sbjct: 1615 LK 1616
>gb|AAK15625.1|AF323442_1 (AF323442) 235 kDa rhoptry protein [Plasmodium yoelii yoelii]
Length = 2752
Score = 45.1 bits (105), Expect = 0.001
Identities = 73/331 (22%), Positives = 145/331 (43%), Gaps = 57/331 (17%)
Query: 26 SSEPLVGIEKNSFNSTVKIISKTDNIE-IQDLKLNRGNCEHDQNFLVKLIQETANTYLFA 84
S E L I+K S + +I +TD +E + D+ + + + + ++++
Sbjct: 1114 SIETLTKIKKTSESHIGEIKGQTDKLEKVADINTYXEDPKEIEKKIENVVKKXDKKKNIY 1173
Query: 85 SEKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLLENGGLFVSGHDYKYTKDDNPIY 144
E K + N ++I + + LEEL ++ NL G +F+ D + K + I
Sbjct: 1174 KEINKLL-NEISEIEKDKTSLEEL-----KNINLSYGRSLGNIFLEQIDEEKKKAERTIK 1227
Query: 145 VVKRMLDNLDSYKYESDDV-------LDVPYEKLLEISIAIEDTKNPKDYPYINLKELKK 197
++ +++LD+ K +SD++ +D+ E++ ++I+ +D +N + K+ KK
Sbjct: 1228 AMEAYIEDLDNIKKKSDEIEKDMKIKMDI-NEEMKALNISNDDDRN----YHTKSKDHKK 1282
Query: 198 LIDSIIDDHGYMADGFLNEYSNRVSKKGLQ---------------ILAKLKSMWPSVG-- 240
I I D + F E K LQ L+K+++++ +
Sbjct: 1283 GISDIHDKSSKIIQNFSKESDINNIKNELQENVSESRKHNSDINHYLSKVENIYNILKLN 1342
Query: 241 --KFYFASLKE---AIPRHAKEVTDKMISSEE--KSIKANQVKLTEAKQDIDK------M 287
K +KE I ++ K + D++ +S + IK N LTE + I+ +
Sbjct: 1343 KIKKIIDKVKEYTDEIKKNNKSINDELXNSGKILTKIKENS-SLTECQSKIESTIDDNYI 1401
Query: 288 EKIIKDLE-------SKKNTLSVYLKFGESF 311
K IKD+ S++N ++ YLK E++
Sbjct: 1402 SKCIKDIADLKTYILSEENNINTYLKNAENY 1432
>gb|AAC84045.1| (AF091804) M protein [Streptococcus pyogenes]
Length = 345
Score = 44.3 bits (103), Expect = 0.002
Identities = 71/297 (23%), Positives = 116/297 (38%), Gaps = 30/297 (10%)
Query: 3 FKTYQKLLGASCLTLYLAGCGSDSSEPLVGIEKNSFNSTVKIISKTDNIEIQDLKLNRGN 62
+ Y K L +Y G + L + K+ + + D +L
Sbjct: 56 YTQYLKRLNDQFQEIYEQTSGEVFDKLLGKVSLKKLELEAKLTELSKKAKQLDEELKNKQ 115
Query: 63 CEHDQNFLVKLIQETANTYLFASEKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLL 122
EHD +E + EKEK + AK+A + K+LE Q + +S D
Sbjct: 116 AEHDVAVQGHYFREKEHQQEL-EEKEKKVTEATAKVAEISKELETANQKI-ESTKQDLTE 173
Query: 123 ENGGLFVSGHDYKYTKDDNPIYVVKRMLDNLDSYKYESDDVLDVPYEKLLEISIAIEDTK 182
+ ++ + TK D D +E + + + LE IA +TK
Sbjct: 174 KQNRVYQLEQELATTKQDLATTKENAKQD------FELAALANAADTQKLEAKIAALETK 227
Query: 183 NPKDYPYINLKELKKLIDSIIDDHGYMADGFLNEYSNRVSKKGLQI--LAKLKSMWPSVG 240
LKE K+ + H + NEY ++++K QI L + K + +
Sbjct: 228 ---------LKEAKEDFELAALGHQHAH----NEYQAKLAEKDNQIKQLEEQKQILDASR 274
Query: 241 KFYFASLKEAIPRHAKEVTDKMISSEEKSIKANQVKLTEAKQDIDKMEK-IIKDLES 296
K L EA+ R AK+ T+ +E ++KA K+TE KQ +D K +DLE+
Sbjct: 275 KGTARDL-EAV-RQAKKATE----AELNNLKAELAKVTEQKQILDASRKGTARDLEA 325
>pir||T18352 protein P120 - Mycoplasma hominis
gb|AAA67449.1| (U22019) P120 [Mycoplasma hominis]
Length = 1078
Score = 44.3 bits (103), Expect = 0.002
Identities = 69/311 (22%), Positives = 118/311 (37%), Gaps = 47/311 (15%)
Query: 9 LLGASCLTLYLAGCGSDSSEPLVGIEKNSFNSTVKIISKTDNIEIQDLKLNRGNCEHDQN 68
+ G + L A C +++ L N ++ + K ++ + K N + N
Sbjct: 14 IFGVAALMPMAASCTHTNNDEL--------NKKIESLEK----QLNEAKANSQKDQAQIN 61
Query: 69 FLVKLIQETANTYLFASEKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLLENGGLF 128
L+K +QET N EKEK +K +LQ+DL ++ Q + N +
Sbjct: 62 DLMKQLQETKNNSKTIEEKEKLVK-------KLQEDLNKIQQERTAKYQAELNAANKAIV 114
Query: 129 VSGHDYKYTKDDNPIYVVKRMLDNLDSYKYESDDVLDVPYEKLLEISIAIEDTKNPKDYP 188
Y+ + N +K L +L++ S+ +K+ + +N
Sbjct: 115 EIPKKYEELNEKND--DLKDQLSSLETKLLSSESKFKNSGKKIESYLKKSTEIENNIKES 172
Query: 189 YINLKELKKLIDSIIDD----HGYMADGFLNEYSNRVSKKGLQILAKLKSMWPSVGKFYF 244
L EL+K +D + + +DG N N +S K +I AK + KF
Sbjct: 173 KTKLVELRKALDDLNKNLETLEKQNSDGTKN---NEISSKKEEIKAKNLEIKQEEEKF-- 227
Query: 245 ASLKEAIPRHAKEVTDKMISSEEK------------SIKANQVKLTEAKQ-DIDKMEKII 291
E + K DK+I K + K N K EA Q ++D ++K
Sbjct: 228 ----EGLQTELKTQKDKIIEETNKKSKLEIEVANLTTKKENISKEIEANQKELDALDKEY 283
Query: 292 KDLESKKNTLS 302
D+ K + LS
Sbjct: 284 DDIVKKSDELS 294
>ref|XP_057107.2| (XM_057107) KIAA1937 protein [Homo sapiens]
Length = 1051
Score = 43.5 bits (101), Expect = 0.003
Identities = 62/272 (22%), Positives = 123/272 (44%), Gaps = 37/272 (13%)
Query: 67 QNFLVKLIQETANTYLFASEKE-----KAIKNHQAKIARLQKDLEELTQHVQQSNNLDKL 121
Q +VK +Q+ + E+E + IK H I L++ L+++TQH K
Sbjct: 577 QQKMVKALQDEQESQRHGFEEEIMEYKEQIKQHAQTIVSLEEKLQKVTQH-------HKK 629
Query: 122 LENGGLFVSGHDYKYTKDDNPIYVVKRMLDNLDSYKYESDDVLDVPYEKLLEISIAIEDT 181
+E + KD++P +R D L + ES D+ YE L++ +A +
Sbjct: 630 IEG--------EIATLKDNDPAPKEERPQDPLVAPMTES-SAKDMAYEHLIDDLLAAQKE 680
Query: 182 KNPKDYPYINLKELKKLIDSIIDDHGYMAD--GFLNEYSNRVSKKGLQILAKLKSMWPSV 239
+ + + KL + + H M+D G LNE ++ + +L + +S SV
Sbjct: 681 ILSQQ------EVIMKLRKDLTEAHSRMSDLRGELNEKQKMELEQNV-VLVQQQSKELSV 733
Query: 240 GKFYFASLKEAIPRHAKEVTDKMISSEEKSIKANQVKLTEAKQDIDKMEKIIKDLESKKN 299
K A + + E D+ + + E++++A+Q K + + +K +K K ++
Sbjct: 734 LKEKMAQMSSLV-----EKKDRELKALEEALRASQEK-HRLQLNTEKEQKPRKKTQTCDT 787
Query: 300 TLSVYLKFGESFTAHYKCQNLIEVGVKTDKGS 331
++ + E+F++ + Q+ ++GV+ KGS
Sbjct: 788 SVQIEPVHTEAFSSSQEQQSFSDLGVRC-KGS 818
>dbj|BAA20832.2| (AB002376) KIAA0378 [Homo sapiens]
Length = 970
Score = 43.1 bits (100), Expect = 0.004
Identities = 59/244 (24%), Positives = 110/244 (44%), Gaps = 29/244 (11%)
Query: 87 KEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLLENGGLFVSGHDYKYTKDDNPIYVV 146
KE+ I Q KI LQ+ L + + + + K L+ S D + +
Sbjct: 550 KERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDS---SNTDTALATLEEALSEK 606
Query: 147 KRMLDNLDSYKYESDDVLDVPYEKLLEISIAIEDTKNPKDYPYINLKELKKLIDSIIDDH 206
+R+++ L + E DD E+L EI ++ K+ K+ EL + S+ID
Sbjct: 607 ERIIERLKEQR-ERDD-----RERLEEIESFRKENKDLKEKVNALQAELTEKESSLID-- 658
Query: 207 GYMADGFLNEYSNRVSKKGLQILAKLKSMWPSVG-KFYFASLKEAIPRHAKEVTDKMISS 265
L E+++ ++ GL+ +KLKS+ ++ K S EA + A + D +
Sbjct: 659 -------LKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMN 711
Query: 266 EEKSIKANQV---------KLTEAKQDIDKMEKIIKDLESKKNTLSVYLKFGESFT-AHY 315
E + + Q+ + +A+ ++D++ +I+K++E++KN + ES T H
Sbjct: 712 PEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTLRHM 771
Query: 316 KCQN 319
K QN
Sbjct: 772 KDQN 775
>gb|AAD33718.1|AF136711_1 (AF136711) myosin heavy chain [Amoeba proteus]
Length = 2138
Score = 43.1 bits (100), Expect = 0.004
Identities = 53/249 (21%), Positives = 114/249 (45%), Gaps = 42/249 (16%)
Query: 53 IQDLKLNRGNCEHDQNFLVKLIQETANTYLFASEKEKAIKNHQAKIARLQKDLEELTQHV 112
++++ NR E ++ L ++E + A + + A N + K + +LE+
Sbjct: 1292 LEEMAKNRSREEKNRKDLENRLRELEDQ---AEDGQAARSNLEKKFRGFEDNLED----- 1343
Query: 113 QQSNNLDKLLENGGLFVSGHDYKYTKDDNPIYVVKRMLDNLDSYKYESDDVLDVPYEKLL 172
+ +D++ ++ + + K ++ + +KR LDN + +++ + V +L
Sbjct: 1344 -HQSQVDEVQDDVNVLSAAKK----KLESELEALKRSLDNEAEGRKVAEEKMKVLDTELH 1398
Query: 173 EISIAIEDTKNPKDYPYINLKELKKLIDSIIDDHGYMADGFLNEYSNRVSKKGLQILAKL 232
E+ +A+ + +N ++ +KK+ D + D LNE SK+ L+KL
Sbjct: 1399 ELQLALSNAENKNTGL---VRNVKKVQDEVED---------LNEQYENASKE----LSKL 1442
Query: 233 KSMWPSVGKFYFASLKEAIPRHAKEVTDKMISSEEKSIKANQVKLTEAKQDIDKMEKIIK 292
K A LKE + RH +E + S+ A ++KL + ++D++ ++
Sbjct: 1443 DKG----NKKTEAELKE-LRRHVQE--------SQSSLDAGELKLRHTQDELDELHHQLE 1489
Query: 293 DLESKKNTL 301
DLE+K ++L
Sbjct: 1490 DLEAKSSSL 1498
Score = 42.4 bits (98), Expect = 0.008
Identities = 50/252 (19%), Positives = 105/252 (40%), Gaps = 28/252 (11%)
Query: 55 DLKLNRGNCEHDQNFLVKLIQETANTYLFASEKEKAIKNHQAKIARLQKDLEELTQHVQQ 114
DL R + + + N ++L E + ++ + + KI++L+K+ ++L +H++
Sbjct: 1144 DLADVRSHIDDEHNQKLRLTNENTRLEAAIDDLKRQLDETKGKISKLEKEKQQLQKHLED 1203
Query: 115 SNNLDKLLENGGLFVSGHDYKYTKDDNPIYVVKRMLDNLDSYKYESDDVLDVPYEKLLEI 174
+ EN K+++ +K LD L + D ++KL ++
Sbjct: 1204 VTAQFEDAEN----------KFSQLTKTNLKLKADLDELQDNREGGDQA----FQKLKKL 1249
Query: 175 SIAIEDTKNPKDYPYINLKELKKLIDSIIDDHGYMADGFLNEYSNRVSKKGLQILAKLKS 234
+E K K+ Y + ++LK +D A L++ K L+ +AK +S
Sbjct: 1250 VAKLESDKKMKEKEYEDERDLKNKLD---------AQKKLSQAELDGLKNALEEMAKNRS 1300
Query: 235 MWPSVGKFYFASLKEAIP-----RHAKEVTDKMISSEEKSIKANQVKLTEAKQDIDKMEK 289
K L+E + A+ +K E +++ +Q ++ E + D++ +
Sbjct: 1301 REEKNRKDLENRLRELEDQAEDGQAARSNLEKKFRGFEDNLEDHQSQVDEVQDDVNVLSA 1360
Query: 290 IIKDLESKKNTL 301
K LES+ L
Sbjct: 1361 AKKKLESELEAL 1372
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.314 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,273,785
Number of Sequences: 1026957
Number of extensions: 8702795
Number of successful extensions: 31840
Number of sequences better than 1.0e-02: 12
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 31810
Number of HSP's gapped (non-prelim): 31
length of query: 338
length of database: 324,149,939
effective HSP length: 122
effective length of query: 216
effective length of database: 198,861,185
effective search space: 42954015960
effective search space used: 42954015960
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 97 (42.0 bits)