BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646049|ref|NP_208231.1| hypothetical protein
[Helicobacter pylori 26695]
         (259 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208231.1|  (NC_000915) hypothetical protein [Helicoba...   525  e-148
ref|NP_224051.1|  (NC_000921) putative [Helicobacter pylori ...   487  e-137

>ref|NP_208231.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64699 hypothetical protein HP1440 - Helicobacter pylori (strain 26695)
 gb|AAD08487.1| (AE000644) H. pylori predicted coding region HP1440 [Helicobacter
           pylori 26695]
          Length = 259

 Score =  525 bits (1353), Expect = e-148
 Identities = 259/259 (100%), Positives = 259/259 (100%)

Query: 1   MAFWHKRLAVGCCIVLFSCMMNANSIQIVRDDPPLDPTLPAWVYSVALLKVYFSDGTYKE 60
           MAFWHKRLAVGCCIVLFSCMMNANSIQIVRDDPPLDPTLPAWVYSVALLKVYFSDGTYKE
Sbjct: 1   MAFWHKRLAVGCCIVLFSCMMNANSIQIVRDDPPLDPTLPAWVYSVALLKVYFSDGTYKE 60

Query: 61  GYATLLKNGRYIASSETLYSNGLYPKTILAKMQDSSAKELICIASLRLEAMDRNQGLSLL 120
           GYATLLKNGRYIASSETLYSNGLYPKTILAKMQDSSAKELICIASLRLEAMDRNQGLSLL
Sbjct: 61  GYATLLKNGRYIASSETLYSNGLYPKTILAKMQDSSAKELICIASLRLEAMDRNQGLSLL 120

Query: 121 KTADFRDDYCHKREESYYHARIYTKYAQTFHSNPYTNQKTPNSDLYYPALNEGNSFSIQI 180
           KTADFRDDYCHKREESYYHARIYTKYAQTFHSNPYTNQKTPNSDLYYPALNEGNSFSIQI
Sbjct: 121 KTADFRDDYCHKREESYYHARIYTKYAQTFHSNPYTNQKTPNSDLYYPALNEGNSFSIQI 180

Query: 181 MGISVAELLKSKKFLSLDVSFKKGSVLWGGRPYFSEVGEFMGMASSTLENQESLVIIPKE 240
           MGISVAELLKSKKFLSLDVSFKKGSVLWGGRPYFSEVGEFMGMASSTLENQESLVIIPKE
Sbjct: 181 MGISVAELLKSKKFLSLDVSFKKGSVLWGGRPYFSEVGEFMGMASSTLENQESLVIIPKE 240

Query: 241 KIVQFLNALKNQNIFPNIP 259
           KIVQFLNALKNQNIFPNIP
Sbjct: 241 KIVQFLNALKNQNIFPNIP 259



>ref|NP_224051.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71820 hypothetical protein jhp1333 - Helicobacter pylori (strain J99)
 gb|AAD06909.1| (AE001556) putative [Helicobacter pylori J99]
          Length = 259

 Score =  487 bits (1254), Expect = e-137
 Identities = 238/259 (91%), Positives = 247/259 (94%)

Query: 1   MAFWHKRLAVGCCIVLFSCMMNANSIQIVRDDPPLDPTLPAWVYSVALLKVYFSDGTYKE 60
           MA WHKRLAVGCCIVL SC+M+AN++ IVRDDPPLDPTLPAW+YSVALLKVYFSDGTYKE
Sbjct: 1   MACWHKRLAVGCCIVLLSCVMSANNVSIVRDDPPLDPTLPAWIYSVALLKVYFSDGTYKE 60

Query: 61  GYATLLKNGRYIASSETLYSNGLYPKTILAKMQDSSAKELICIASLRLEAMDRNQGLSLL 120
           GYATLL+NGRYIASSETLYSNGLYPK ILAKMQDSSAKELICIASL LEAMDR+QGLSLL
Sbjct: 61  GYATLLENGRYIASSETLYSNGLYPKMILAKMQDSSAKELICIASLHLEAMDRDQGLSLL 120

Query: 121 KTADFRDDYCHKREESYYHARIYTKYAQTFHSNPYTNQKTPNSDLYYPALNEGNSFSIQI 180
           KTADFRDDYCHKREESYYHARIY KYAQTFHSNPYTNQKTP SDLYYPALNEGNSFSIQ 
Sbjct: 121 KTADFRDDYCHKREESYYHARIYAKYAQTFHSNPYTNQKTPTSDLYYPALNEGNSFSIQT 180

Query: 181 MGISVAELLKSKKFLSLDVSFKKGSVLWGGRPYFSEVGEFMGMASSTLENQESLVIIPKE 240
             ISVAELLKSKKFLSLD SFKKGSVLWGGRPYFSEVGEFMGMASSTLENQESLVIIPKE
Sbjct: 181 TDISVAELLKSKKFLSLDASFKKGSVLWGGRPYFSEVGEFMGMASSTLENQESLVIIPKE 240

Query: 241 KIVQFLNALKNQNIFPNIP 259
           KI +FL+ALKNQNIFPNIP
Sbjct: 241 KIARFLSALKNQNIFPNIP 259



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,879,095
Number of Sequences: 1026957
Number of extensions: 6479949
Number of successful extensions: 17660
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17658
Number of HSP's gapped (non-prelim): 2
length of query: 259
length of database: 324,149,939
effective HSP length: 119
effective length of query: 140
effective length of database: 201,942,056
effective search space: 28271887840
effective search space used: 28271887840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 96 (41.6 bits)