BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646052|ref|NP_208234.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(268 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208234.1| (NC_000915) conserved hypothetical protein... 541 e-153
ref|NP_224054.1| (NC_000921) putative [Helicobacter pylori ... 491 e-138
ref|NP_282252.1| (NC_002163) hypothetical proteinCj1104 [Ca... 120 2e-26
ref|NP_296566.1| (NC_002620) kinase, GHMP family [Chlamydia... 79 5e-14
ref|NP_563128.1| (NC_003366) isopentenyl monophosphate kina... 74 1e-12
sp|P93841|ISPE_LYCES 4-diphosphocytidyl-2-C-methyl-D-erythr... 74 2e-12
gb|AAF76143.1|AF258339_1 (AF258339) 4-diphosphocytidyl-2C-m... 74 2e-12
ref|NP_220324.1| (NC_000117) Predicted Kinase [Chlamydia tr... 74 2e-12
dbj|BAB86428.1| (AP003221) putative 4-diphosphocytidyl-2-C-... 73 3e-12
ref|NP_602935.1| (NC_003454) 4-diphosphocytidyl-2-C-methyl-... 73 3e-12
ref|NP_624079.1| (NC_003869) 4-diphosphocytidyl-2C-methyl-D... 72 5e-12
ref|NP_180261.1| (NM_128250) putative ripening-associated p... 70 2e-11
gb|AAG01340.1|AF288615_1 (AF288615) 4-diphosphocytidyl-2C-m... 69 5e-11
ref|NP_229184.1| (NC_000853) conserved hypothetical protein... 69 7e-11
ref|NP_240927.1| (NC_002570) isopentenyl monophosphate kina... 66 3e-10
sp|P56848|ISPE_MENPI 4-diphosphocytidyl-2-C-methyl-D-erythr... 65 1e-09
ref|NP_469574.1| (NC_003212) similar to B. subtilis YabH pr... 64 1e-09
ref|NP_653993.1| (NC_003995) hypothetical protein predicted... 64 2e-09
ref|NP_371019.1| (NC_002758) hypothetical protein [Staphylo... 63 3e-09
ref|NP_213622.1| (NC_000918) hypothetical protein [Aquifex ... 61 1e-08
ref|NP_463721.1| (NC_003210) similar to B. subtilis YabH pr... 61 1e-08
ref|NP_283862.1| (NC_003116) hypothetical protein NMA1092 [... 59 4e-08
ref|NP_273915.1| (NC_003112) conserved hypothetical protein... 59 7e-08
ref|NP_387927.1| (NC_000964) similar to hypothetical protei... 58 9e-08
ref|NP_078439.1| (NC_002162) conserved hypothetical [Ureapl... 57 2e-07
ref|NP_660520.1| (NC_004061) isopentenyl monophosphate kina... 57 2e-07
ref|NP_487270.1| (NC_003272) 4-diphosphocytidyl-2C-methyl-D... 56 5e-07
ref|NP_439985.1| (NC_000911) hypothetical protein [Synechoc... 55 6e-07
ref|NP_349504.1| (NC_003030) Isopentenyl monophosphate kina... 55 1e-06
ref|NP_301011.1| (NC_002491) kinase [Chlamydophila pneumoni... 54 1e-06
ref|NP_353654.1| (NC_003062) AGR_C_1122p [Agrobacterium tum... 54 1e-06
ref|NP_231813.1| (NC_002505) kinase, GHMP family [Vibrio ch... 54 2e-06
ref|NP_287454.1| (NC_002655) orf, hypothetical protein [Esc... 54 2e-06
ref|NP_309740.1| (NC_002695) 4-diphosphocytidyl-2C-methyl-D... 53 3e-06
ref|NP_456289.1| (NC_003198) isopentenyl monophosphate kina... 51 1e-05
ref|NP_460735.1| (NC_003197) isopentenyl monophosphate kina... 51 1e-05
pir||PC1178 hypothetical 21.8K protein (hemM 3' region) - E... 51 2e-05
ref|NP_540454.1| (NC_003317) 4-DIPHOSPHOCYTIDYL-2-C-METHYL-... 50 2e-05
sp|Q9X3W5|ISPE_ZYMMO 4-diphosphocytidyl-2-C-methyl-D-erythr... 50 3e-05
ref|NP_245182.1| (NC_002663) unknown [Pasteurella multocida... 50 3e-05
ref|NP_240001.1| (NC_002528) hypothetical protein [Buchnera... 49 6e-05
sp|P57267|ISPE_BUCAI 4-diphosphocytidyl-2-C-methyl-D-erythr... 49 6e-05
pir||A64173 conserved hypothetical protein HI1608 - Haemoph... 49 7e-05
ref|NP_439750.1| (NC_000907) conserved hypothetical protein... 49 7e-05
ref|NP_218811.1| (NC_000919) conserved hypothetical protein... 48 1e-04
ref|NP_215527.1| (NC_000962) hypothetical protein Rv1011 [M... 47 2e-04
ref|NP_518517.1| (NC_003295) PROBABLE ISOPENTENYL MONOPHOSP... 47 3e-04
ref|NP_299922.1| (NC_002488) isopentenyl monophosphate kina... 46 4e-04
ref|NP_301301.1| (NC_002677) putative isopentenyl monophosp... 46 4e-04
ref|NP_420149.1| (NC_002696) kinase, GHMP family, group 2 [... 45 6e-04
ref|NP_662380.1| (NC_002932) 4-diphosphocytidyl-2C-methyl-D... 45 0.001
ref|NP_641300.1| (NC_003919) 4-diphosphocytidyl-2-C-methyl-... 45 0.001
gb|AAD21541.1| (AF088896) unknown [Zymomonas mobilis] 44 0.001
ref|NP_405570.1| (NC_003143) putative 4-diphosphocytidyl-2-... 44 0.001
ref|NP_636262.1| (NC_003902) 4-diphosphocytidyl-2-C-methyl-... 44 0.002
ref|NP_107741.1| (NC_002678) isopentenyl monophosphate kina... 42 0.007
ref|NP_384950.1| (NC_003047) PUTATIVE ISOPENTENYL MONOPHOSP... 42 0.007
>ref|NP_208234.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O25984|ISPE_HELPY 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||C64700 conserved hypothetical protein HP1443 - Helicobacter pylori
(strain 26695)
gb|AAD08481.1| (AE000644) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 268
Score = 541 bits (1394), Expect = e-153
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MTHVFEVYPKVNIFLKILHKEGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPL 60
MTHVFEVYPKVNIFLKILHKEGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPL
Sbjct: 1 MTHVFEVYPKVNIFLKILHKEGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPL 60
Query: 61 EENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHL 120
EENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHL
Sbjct: 61 EENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHL 120
Query: 121 NQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAP 180
NQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAP
Sbjct: 121 NQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAP 180
Query: 181 NHVFCSTKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNGLNDLLKPALLTNQALKDI 240
NHVFCSTKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNGLNDLLKPALLTNQALKDI
Sbjct: 181 NHVFCSTKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNGLNDLLKPALLTNQALKDI 240
Query: 241 ESELGKEWFFSGSGSAFFRLKPMQKGGE 268
ESELGKEWFFSGSGSAFFRLKPMQKGGE
Sbjct: 241 ESELGKEWFFSGSGSAFFRLKPMQKGGE 268
>ref|NP_224054.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZJH3|ISPE_HELPJ 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||F71820 hypothetical protein jhp1336 - Helicobacter pylori (strain J99)
gb|AAD06912.1| (AE001556) putative [Helicobacter pylori J99]
Length = 274
Score = 491 bits (1263), Expect = e-138
Identities = 242/266 (90%), Positives = 252/266 (93%)
Query: 1 MTHVFEVYPKVNIFLKILHKEGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPL 60
MTHVFEVYPKVN+FLKILHKEGAYHK+ISRMCLVK+KLKDIISVK+ALSFSLKGDFDCPL
Sbjct: 1 MTHVFEVYPKVNVFLKILHKEGAYHKIISRMCLVKNKLKDIISVKNALSFSLKGDFDCPL 60
Query: 61 EENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHL 120
EENSLFKALQ+LK FL KNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGS DAGGLLYHL
Sbjct: 61 EENSLFKALQVLKKFLVQKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSADAGGLLYHL 120
Query: 121 NQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAP 180
NQ+FDWRLSL+ELY+MGSLVGADTNFFISQYKS NATSYGEVIENFEEE LE+RLEIYAP
Sbjct: 121 NQMFDWRLSLKELYTMGSLVGADTNFFISQYKSANATSYGEVIENFEEESLEDRLEIYAP 180
Query: 181 NHVFCSTKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNGLNDLLKPALLTNQALKDI 240
NHVFCSTKAVYQAYKPETCF QAKEWLKK SLECLKTYDRN LNDLLKPAL TN ALKDI
Sbjct: 181 NHVFCSTKAVYQAYKPETCFFQAKEWLKKTSLECLKTYDRNELNDLLKPALRTNPALKDI 240
Query: 241 ESELGKEWFFSGSGSAFFRLKPMQKG 266
ES+L KEWFFSGSGSAFFRLK QKG
Sbjct: 241 ESQLSKEWFFSGSGSAFFRLKNTQKG 266
>ref|NP_282252.1| (NC_002163) hypothetical proteinCj1104 [Campylobacter jejuni]
sp|Q9PNJ0|ISPE_CAMJE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||C81314 hypothetical protein Cj1104 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73359.1| (AL139077) hypothetical proteinCj1104 [Campylobacter jejuni]
Length = 255
Score = 120 bits (301), Expect = 2e-26
Identities = 85/265 (32%), Positives = 140/265 (52%), Gaps = 23/265 (8%)
Query: 6 EVYPKVNIFLKILHKEGA-YHKLISRMCLVKDKLKDIISVK----SALSFSLKGDFDCPL 60
+ Y K NIFLK+ + YH L SR L+KD ++ V S F + +F C
Sbjct: 2 KAYAKANIFLKLTGFDSRKYHLLESRFILLKDVFDELELVDKESDSKKEFEIISNFKC-- 59
Query: 61 EENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHL 120
E N + KA +L S+ +++ + + ++++ KNIP AGLGGGS+D L +
Sbjct: 60 ENNIIQKAYLLL-----SRRYNNELKELFSKKSLKLTKNIPVCAGLGGGSSDCASFLLLI 114
Query: 121 NQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAP 180
N+ + +L+L+EL ++ +G+D FF+S + S N +S GE+IE FE++ + N +
Sbjct: 115 NETLNLKLNLQELINLSIQLGSDIAFFLSGFHSANVSSCGEIIEEFEDD-IPNLKWTFP- 172
Query: 181 NHVFCSTKAVYQAYKP-----ETCFSQAKEWLKKPSLECLKTYDRNGLNDLLKPALLTNQ 235
+ C TKAVY + + +QA+ + K + E L+ + LNDL P
Sbjct: 173 -QISCQTKAVYDEFDRGIFDFQKNNNQAQIYKKLSTKELLQNFKNKELNDLFTPCATLYP 231
Query: 236 ALKDIESELGKEWFFSGSGSAFFRL 260
+K S L +++F SGSGS+ F++
Sbjct: 232 KMK---SYLQEDFFLSGSGSSVFKV 253
>ref|NP_296566.1| (NC_002620) kinase, GHMP family [Chlamydia muridarum]
sp|Q9PLC0|ISPE_CHLMU 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||G81732 kinase, GHMP family TC0187 [imported] - Chlamydia muridarum
(strain Nigg)
gb|AAF39061.1| (AE002285) kinase, GHMP family [Chlamydia muridarum]
Length = 283
Score = 79.0 bits (193), Expect = 5e-14
Identities = 74/257 (28%), Positives = 112/257 (42%), Gaps = 35/257 (13%)
Query: 10 KVNIFLKILHK-EGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPLEENSLFKA 68
K+NIFL++L K E +H++++R V + +SV S SF + D + NS++K+
Sbjct: 8 KLNIFLQLLGKREDGFHEIVTRYQAVSFGDQLSLSVSSRDSFQIINDCQLEISNNSIWKS 67
Query: 69 LQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWRL 128
+ + + D ++ V K+IP +GL GGS++A L+ LNQ+F L
Sbjct: 68 TALFRQYTGIT----------DPVSWRVVKHIPIGSGLAGGSSNAATALFALNQMFQTGL 117
Query: 129 SLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAPNHVFCSTK 188
S EEL S+ VG DT FF S S GE + E ++ + ++ V T
Sbjct: 118 SDEELRSLAEKVGMDTPFFFSS-GSALGLGRGEKVVTLNELVVDRYILYFSNKGVL--TS 174
Query: 189 AVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNGLNDLLKPALLTNQALKDIESELGKEW 248
+ KP C SL Y R NDL P LK+ + L W
Sbjct: 175 EAFAVVKPSDC-----------SLSKDLEYAR---NDLENPVFRLRLDLKEKKRWLEDLW 220
Query: 249 -------FFSGSGSAFF 258
+GSG+ F
Sbjct: 221 KGIPVYVGLTGSGATLF 237
>ref|NP_563128.1| (NC_003366) isopentenyl monophosphate kinase [Clostridium
perfringens]
sp|Q8XIA9|ISPE_CLOPE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
dbj|BAB81918.1| (AP003193) isopentenyl monophosphate kinase [Clostridium
perfringens]
Length = 288
Score = 74.3 bits (181), Expect = 1e-12
Identities = 73/264 (27%), Positives = 117/264 (43%), Gaps = 26/264 (9%)
Query: 6 EVYPKVNIFLKILHK-EGAYHKLISRMCLVKDKLKDIISVK----SALSFSLKGDFDCPL 60
+ Y K+NI L + K E YH L RM + L D+I ++ S +S S +
Sbjct: 4 KAYAKINIALDAIGKREDNYHLL--RMIMQTVDLYDVIDIEKSNDSNISISCNKHYVSTD 61
Query: 61 EENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHL 120
E N +KA + ++ K D + I ++KNIP AG+ GGST+A +L +
Sbjct: 62 ERNLAYKAAVLFRDEFNIK----------DGVKINIKKNIPVAAGMAGGSTNAAAVLVIM 111
Query: 121 NQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAP 180
N++F+ SLE L +G +GAD + I + + GE+I +P EN++ +
Sbjct: 112 NKLFNVNASLEVLKEIGLKIGADVPYCI-EGGTALCEGIGEIITPL--KPFENKILVVLK 168
Query: 181 NHVFCSTKAVYQAYKPETCFSQA--KEWLKKPSLECLKTYDRNGLNDLLKPALLTNQALK 238
+ STK VY + ++ + L +N N L L + LK
Sbjct: 169 PNFGVSTKEVYTNLDINKIRKHVNIEGLIQAMENDDLDYVSKNMKNVLENVTLKKHTILK 228
Query: 239 DIESELGKEW----FFSGSGSAFF 258
+I+ ++ K SGSG F
Sbjct: 229 NIKEDMRKSGALGAMMSGSGPTVF 252
>sp|P93841|ISPE_LYCES 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast
precursor (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase) (Ripening-associated protein pTOM41)
pir||T07419 ripening-associated protein, chromoplast - tomato (fragment)
gb|AAB49936.1| (U62773) ripening-associated protein [Lycopersicon esculentum]
gb|AAF87717.1|AF263101_1 (AF263101) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
[Lycopersicon esculentum]
Length = 401
Score = 73.9 bits (180), Expect = 2e-12
Identities = 77/267 (28%), Positives = 123/267 (45%), Gaps = 43/267 (16%)
Query: 10 KVNIFLKILHK-EGAYHKLISRMCLVK--DKLKDIISV---KSALSFSLKGDFDCPLEE- 62
K+N+FL+I K + YH L S ++ DK+K +S K LS ++ G PL+E
Sbjct: 96 KINVFLRITSKRDDGYHDLASLFHVISLGDKIKFSLSPSKSKDRLSTNVAG---VPLDER 152
Query: 63 NSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQ 122
N + KAL + + + N+ I ++K +PT AGLGGGS++A L+ NQ
Sbjct: 153 NLIIKALNLYRKKTGTDNY----------FWIHLDKKVPTGAGLGGGSSNAATTLWAANQ 202
Query: 123 IFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEE-PLENRLEIYAPN 181
+ +EL +G+D FF S + + T GEV+++ P + + + P
Sbjct: 203 FSGCVATEKELQEWSGEIGSDIPFFFS-HGAAYCTGRGEVVQDIPSPIPFDIPMVLIKPQ 261
Query: 182 HVFCSTKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNGL------NDLLKPALLTNQ 235
CST VY+ ++ + K L L+ +G+ NDL PA
Sbjct: 262 QA-CSTAEVYKRFQLDLS-------SKVDPLSLLEKISTSGISQDVCVNDLEPPAFEVLP 313
Query: 236 ALKDIESEL---GK----EWFFSGSGS 255
+LK ++ + G+ F SGSGS
Sbjct: 314 SLKRLKQRVIAAGRGQYDAVFMSGSGS 340
>gb|AAF76143.1|AF258339_1 (AF258339) 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
[Expression vector pNCO-HIS6-TM-YCHB]
Length = 331
Score = 73.9 bits (180), Expect = 2e-12
Identities = 77/267 (28%), Positives = 123/267 (45%), Gaps = 43/267 (16%)
Query: 10 KVNIFLKILHK-EGAYHKLISRMCLVK--DKLKDIISV---KSALSFSLKGDFDCPLEE- 62
K+N+FL+I K + YH L S ++ DK+K +S K LS ++ G PL+E
Sbjct: 26 KINVFLRITSKRDDGYHDLASLFHVISLGDKIKFSLSPSKSKDRLSTNVAG---VPLDER 82
Query: 63 NSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQ 122
N + KAL + + + N+ I ++K +PT AGLGGGS++A L+ NQ
Sbjct: 83 NLIIKALNLYRKKTGTDNY----------FWIHLDKKVPTGAGLGGGSSNAATTLWAANQ 132
Query: 123 IFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEE-PLENRLEIYAPN 181
+ +EL +G+D FF S + + T GEV+++ P + + + P
Sbjct: 133 FSGCVATEKELQEWSGEIGSDIPFFFS-HGAAYCTGRGEVVQDIPSPIPFDIPMVLIKPQ 191
Query: 182 HVFCSTKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNGL------NDLLKPALLTNQ 235
CST VY+ ++ + K L L+ +G+ NDL PA
Sbjct: 192 QA-CSTAEVYKRFQLDLS-------SKVDPLSLLEKISTSGISQDVCVNDLEPPAFEVLP 243
Query: 236 ALKDIESEL---GK----EWFFSGSGS 255
+LK ++ + G+ F SGSGS
Sbjct: 244 SLKRLKQRVIAAGRGQYDAVFMSGSGS 270
>ref|NP_220324.1| (NC_000117) Predicted Kinase [Chlamydia trachomatis]
sp|O84810|ISPE_CHLTR 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||B71470 probable kinase - Chlamydia trachomatis (serotype D, strain UW3/Cx)
gb|AAC68399.1| (AE001352) Predicted Kinase [Chlamydia trachomatis]
Length = 288
Score = 73.6 bits (179), Expect = 2e-12
Identities = 72/259 (27%), Positives = 120/259 (45%), Gaps = 39/259 (15%)
Query: 10 KVNIFLKIL-HKEGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPLE--ENSLF 66
K+N+FL+IL +E +H++++R + D +S+ + SL+ C LE NS++
Sbjct: 8 KLNLFLQILGRREDDFHEIVTRYQAIA--FGDQLSLSISSRDSLQVINACHLETPSNSIW 65
Query: 67 KALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDW 126
K++ + + + ++ V K IP AGL GGS++A L+ LNQIF
Sbjct: 66 KSVALFRRYTGITT----------PVSWRVVKQIPVGAGLAGGSSNAATALFALNQIFKT 115
Query: 127 RLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAPNHVFCS 186
LS EE+ S+ +G DT FF S + ++I EE + +R +Y + +
Sbjct: 116 GLSDEEMRSLAEQLGVDTPFFFSTGAALGVARGEKIIA--LEESVSDRYVLYFSSEGVLT 173
Query: 187 TKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNGLNDLLKPALLTNQALKDIESELGK 246
++A + A +P C S + +LE + NDL KP LK+ + L
Sbjct: 174 SRA-FAAVQPSDCSS-------RKNLEYTQ-------NDLEKPVFRLRLDLKEKKHWLEN 218
Query: 247 EWF-------FSGSGSAFF 258
W +GSG+ F
Sbjct: 219 LWAELPVHIGLTGSGATLF 237
>dbj|BAB86428.1| (AP003221) putative 4-diphosphocytidyl-2-C-methyl-D-erythri tol
kinase [Oryza sativa (japonica cultivar-group)]
Length = 401
Score = 73.2 bits (178), Expect = 3e-12
Identities = 77/266 (28%), Positives = 116/266 (42%), Gaps = 41/266 (15%)
Query: 10 KVNIFLKILHKE-GAYHKLISRMCLVK--DKLKDIISV---KSALSFSLKGDFDCPLEEN 63
K+N+FL+I K +H L S ++ D +K +S K LS ++ G P++E+
Sbjct: 95 KINVFLRITGKRPDGFHDLASLFHVISLGDTIKFSLSPSKSKDRLSTNVAG---VPVDES 151
Query: 64 SLF-KALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQ 122
+L KAL + + + NF I ++K +PT AGLGGGS++A L+ NQ
Sbjct: 152 NLIIKALNLYRKKTGTDNF----------FWIHLDKKVPTGAGLGGGSSNAATALWAANQ 201
Query: 123 IFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAPNH 182
S +EL +G+D FF SQ + T GE++E+ N +
Sbjct: 202 FSGCIASEKELQEWSGEIGSDIPFFFSQ-GAAYCTGRGEIVEDIRNPLPANLPMVLVKPP 260
Query: 183 VFCSTKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNGL------NDLLKPALLTNQA 236
CST VY+ + E + L LK NG+ NDL PA +
Sbjct: 261 EACSTAEVYKRLRLE-------HTSQTDPLVLLKEITENGISQDACVNDLEPPAFEVLPS 313
Query: 237 LKDIESEL-------GKEWFFSGSGS 255
LK ++ + F SGSGS
Sbjct: 314 LKRLKKRIIAANRGDYDAVFMSGSGS 339
>ref|NP_602935.1| (NC_003454) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gb|AAL94234.1| (AE010517) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 294
Score = 73.2 bits (178), Expect = 3e-12
Identities = 76/265 (28%), Positives = 125/265 (46%), Gaps = 32/265 (12%)
Query: 10 KVNIFLKILHKEG-AYHKLISRMCLVKDKLKDIISVKSALSFSLKGDF--DC-----PLE 61
K+NI L + KE YH + S M + D+ +S GD +C P +
Sbjct: 15 KINIGLNVFQKESDGYHNIDSIMAPI-----DLSDEMDVTFYSDLGDLKIECSDKSIPTD 69
Query: 62 E-NSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHL 120
E N L+K +I F +SK K + + I ++KNIP++AGLGGGS++AG L L
Sbjct: 70 ERNILYKTYKIF--FEESK-------KEKEKIDIILKKNIPSEAGLGGGSSNAGFFLKLL 120
Query: 121 NQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAP 180
N+ + + +EL + VG+D FFI K+ G ++ E L++ + + P
Sbjct: 121 NKHYGNVYNEKELEKLAMRVGSDVPFFIKN-KTARVGGKGNRVD-LVENNLKDSIILIKP 178
Query: 181 NHVFCSTKAVYQAYK--PETCFSQAKEWLKKPSLECLKTYDRNGLNDLLKPALLTNQALK 238
STK Y+++ E ++ + +K + N N L + L T+ +K
Sbjct: 179 LDFGVSTKEAYESFDNLKEVKYADFDKIIKNLKEGNRIALESNIENSLEQGILETDTNIK 238
Query: 239 DIESEL-----GKEWFFSGSGSAFF 258
++ L GK++F SGSGS ++
Sbjct: 239 MLKMTLNSVVSGKKFFMSGSGSTYY 263
>ref|NP_624079.1| (NC_003869) 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate
synthase [Thermoanaerobacter tengcongensis]
gb|AAM25683.1| (AE013196) 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate
synthase [Thermoanaerobacter tengcongensis]
Length = 287
Score = 72.4 bits (176), Expect = 5e-12
Identities = 77/256 (30%), Positives = 126/256 (49%), Gaps = 27/256 (10%)
Query: 6 EVYPKVNIFLKILHK-EGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFD-CPL-EE 62
+ Y KVN+ L +L K E YH+++S M + L D+I + A + D + P EE
Sbjct: 6 KAYAKVNLTLDVLSKREDGYHEILSVMQSID--LADVIEFEKAKEILFECDHERVPKGEE 63
Query: 63 NSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQ 122
N + KA N ++ + F + IK I++ KNIP AGL GGS DA + L++
Sbjct: 64 NLIMKAF----NAIRDRYFLNEGIK------IKLFKNIPLAAGLAGGSADAAATIVALDK 113
Query: 123 IFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAPNH 182
+++ L+ +E+ + S VG+D F + + + A+ GE +++ E PL L + P+
Sbjct: 114 LWNLNLTEKEMEEIASEVGSDVPFCL-KGGTKLASGRGEKLQDLEGIPL--NLLLVKPD- 169
Query: 183 VFCSTKAVYQAYKPETCFSQAKEWLKKPSLECLKTYD-----RNGLNDLLKPALLTNQAL 237
+ STK VY + S +L +E LK D RN NDL + + +
Sbjct: 170 LEISTKEVYTEWDNSGFKSLNSTFL---FVEALKKGDLLEIARNISNDLERVTSQKYRVI 226
Query: 238 KDIESELGKEWFFSGS 253
+DI+ L ++ S S
Sbjct: 227 EDIKKSLIEKGALSAS 242
>ref|NP_180261.1| (NM_128250) putative ripening-associated protein [Arabidopsis
thaliana]
sp|O81014|ISPE_ARATH 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast
precursor (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase) (CDPMEK)
pir||T02642 ripening-associated protein homolog F12C20.3 - Arabidopsis thaliana
gb|AAC32234.1| (AC005168) putative ripening-associated protein [Arabidopsis
thaliana]
dbj|BAB21593.1| (AB037877) 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase
[Arabidopsis thaliana]
Length = 383
Score = 70.1 bits (170), Expect = 2e-11
Identities = 75/267 (28%), Positives = 123/267 (45%), Gaps = 43/267 (16%)
Query: 10 KVNIFLKILHK-EGAYHKLISRMCLVK--DKLKDIISV---KSALSFSLKGDFDCPLE-E 62
K+N+FL+I K E +H L S ++ D +K +S K LS +++G P++
Sbjct: 80 KINVFLRITGKREDGFHDLASLFHVISLGDTIKFSLSPSKSKDRLSTNVQG---VPVDGR 136
Query: 63 NSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQ 122
N + KAL + + S F I ++K +PT AGLGGGS++A L+ N+
Sbjct: 137 NLIIKALNLYRKKTGSNRF----------FWIHLDKKVPTGAGLGGGSSNAATALWAANE 186
Query: 123 IFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEE-PLENRLEIYAPN 181
+ ++ EL S +G+D FF S + + T GE++++ PL+ + + P
Sbjct: 187 LNGGLVTENELQDWSSEIGSDIPFFFS-HGAAYCTGRGEIVQDLPPPFPLDLPMVLIKPR 245
Query: 182 HVFCSTKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNG------LNDLLKPALLTNQ 235
CST VY+ + + + L L+ NG +NDL PA
Sbjct: 246 EA-CSTAEVYKRLRLD-------QTSNINPLTLLENVTSNGVSQSICVNDLEPPAFSVLP 297
Query: 236 ALKDIESEL---GK----EWFFSGSGS 255
+LK ++ + G+ F SGSGS
Sbjct: 298 SLKRLKQRIIASGRGEYDAVFMSGSGS 324
>gb|AAG01340.1|AF288615_1 (AF288615) 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
[Arabidopsis thaliana]
Length = 383
Score = 68.9 bits (167), Expect = 5e-11
Identities = 75/267 (28%), Positives = 122/267 (45%), Gaps = 43/267 (16%)
Query: 10 KVNIFLKILHK-EGAYHKLISRMCLVK--DKLKDIISV---KSALSFSLKGDFDCPLE-E 62
K+N+FL+I K E +H L S ++ +K +S K LS +++G P++
Sbjct: 80 KINVFLRITGKREDGFHDLASLFHVISLGGTIKFSLSPSKSKDRLSTNVQG---VPVDGR 136
Query: 63 NSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQ 122
N + KAL + + S F I ++K +PT AGLGGGS++A L+ N+
Sbjct: 137 NLIIKALNLYRKKTGSNRF----------FWIHLDKKVPTGAGLGGGSSNAATALWAANE 186
Query: 123 IFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEE-PLENRLEIYAPN 181
+ ++ EL S +G+D FF S + + T GE++++ PL+ + + P
Sbjct: 187 LNGGLVTENELQDWSSEIGSDIPFFFS-HGAAYCTGRGEIVQDLPPPFPLDLPMVLIKPR 245
Query: 182 HVFCSTKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNG------LNDLLKPALLTNQ 235
CST VY+ + + + L LK NG +NDL PA
Sbjct: 246 EA-CSTAEVYKRLRLD-------QTSNINPLTLLKNVTSNGVSQSICVNDLEPPAFSVLP 297
Query: 236 ALKDIESEL---GK----EWFFSGSGS 255
+LK ++ + G+ F SGSGS
Sbjct: 298 SLKRLKQRIIASGRGEYDAVFMSGSGS 324
>ref|NP_229184.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
sp|Q9X1A3|ISPE_THEMA 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||H72261 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD36453.1|AE001791_15 (AE001791) conserved hypothetical protein [Thermotoga maritima]
Length = 271
Score = 68.6 bits (166), Expect = 7e-11
Identities = 74/271 (27%), Positives = 130/271 (47%), Gaps = 34/271 (12%)
Query: 8 YPKVNIFLKILHKEG-AYHKLISRMCLVKDKLKDIISVKSA-LSFSLKGDFDCPLEENSL 65
Y K+N++L +L K YH+++ + L D ++V+ F L+ P +N++
Sbjct: 15 YAKLNLYLDVLGKRSDGYHEIVGLFQTIS--LHDTLTVEICDRGFYLESSVALP-SDNTI 71
Query: 66 FKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFD 125
+A ++ + K F L + ++K IP +GLGGGS++A +L +L ++F
Sbjct: 72 KRAWEMFRKNT-GKEFG---------LKVTLKKEIPVGSGLGGGSSNAAAVLRYLGEVF- 120
Query: 126 WRLSLEELYSMGSLVGADTNFFISQYKSTN-ATSYGEVIENFEEEPLEN-RLEIYAPNHV 183
++ LE+L ++ + VG+D FF+ Y T GE++E E+ +E ++++ P +
Sbjct: 121 -KIPLEDLLNIAAQVGSDVPFFL--YGGTALVRGRGEIVEKLED--IEGYSVDLFFPG-I 174
Query: 184 FCSTKAVYQAYKPETCFS--QAKEWLKKPSLECLKTYDR---NGLNDLLKPALLTNQALK 238
STK +Y + PE E L + LE + Y++ N K L + +
Sbjct: 175 HSSTKEMYLSLTPEMYRKGPGRVEELHRAYLE--RNYEKIKELSYNVFEKVFLEKHPEVM 232
Query: 239 DIESELGK---EWFFSGSGSAFFRLKPMQKG 266
D G +GSGS FF L P+ KG
Sbjct: 233 DGLRNFGDGSIVKMMTGSGSVFFALYPLDKG 263
>ref|NP_240927.1| (NC_002570) isopentenyl monophosphate kinase [Bacillus halodurans]
sp|Q9KGK0|ISPE_BACHD 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
dbj|BAB03780.1| (AP001507) isopentenyl monophosphate kinase [Bacillus halodurans]
Length = 287
Score = 66.2 bits (160), Expect = 3e-10
Identities = 51/165 (30%), Positives = 80/165 (47%), Gaps = 16/165 (9%)
Query: 10 KVNIFLKILHKE-GAYHKLISRMCLVK--DKLKDIISVKSALSFSLKGDFDCPLEENSLF 66
K+N+ L +LHK YH++ M V D++ + +S + F E+N +
Sbjct: 10 KINLSLDVLHKRPDGYHEVDMIMTTVDLADRIDLTLREDGLISVDVSEGFVPNDEKNLAY 69
Query: 67 KALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDW 126
+A +LK + ++I + K IP AGL GGS+DA L LN ++
Sbjct: 70 QAAALLKARYHVN----------EGVSIYITKRIPVAAGLAGGSSDAAATLRGLNDLWQL 119
Query: 127 RLSLEELYSMGSLVGADTNFFISQYKST-NATSYGEVIENFEEEP 170
LSL+EL +G+ +G+D +F + Y T AT GE+IE P
Sbjct: 120 GLSLDELAVLGAEIGSDVSFCV--YGGTARATGRGEIIERIASPP 162
>sp|P56848|ISPE_MENPI 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast
precursor (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
gb|AAF13866.1|AF179283_1 (AF179283) isopentenyl monophosphate kinase [Mentha x piperita]
emb|CAB65292.1| (AJ249324) isopentenyl monophosphate kinase [Mentha x piperita]
Length = 405
Score = 64.7 bits (156), Expect = 1e-09
Identities = 71/264 (26%), Positives = 114/264 (42%), Gaps = 37/264 (14%)
Query: 10 KVNIFLKILHK-EGAYHKLISRMCLVK--DKLKDIISVKSALSFSLKGDFDCPLEE-NSL 65
K+N+FL+I K E +H L S ++ DK+K +S + PL+E N +
Sbjct: 105 KINVFLRITGKREDGFHDLASLFHVISLGDKIKFSLSPSKFNGSFVTNVPGVPLDEKNLI 164
Query: 66 FKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFD 125
KAL + + K+ H I ++K +PT AGLGGGS++A L+ NQ
Sbjct: 165 IKALNLFRK--KTGTDKH--------FWIHLDKKVPTGAGLGGGSSNAATALWAANQFSG 214
Query: 126 WRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEE-PLENRLEIYAPNHVF 184
+ ++L +G+D FF S + + T GEV+E+ P + + + P
Sbjct: 215 CIATEKDLQEWSGEIGSDIPFFFS-HGAAYCTGRGEVVEDIPPPVPRDLSMVLMKPQEA- 272
Query: 185 CSTKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNGL------NDLLKPALLTNQALK 238
C T VY+ + + + L L+ + G+ NDL PA +LK
Sbjct: 273 CPTGEVYKRLRLD-------QTSDIDPLVLLEKISKGGISQDVCVNDLEPPAFEVVPSLK 325
Query: 239 DIESELGKEW-------FFSGSGS 255
++ + F SGSGS
Sbjct: 326 RLKQRIAAAGRSQYDAVFMSGSGS 349
>ref|NP_469574.1| (NC_003212) similar to B. subtilis YabH protein [Listeria innocua]
sp|Q92F77|ISPE_LISIN 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
emb|CAC95462.1| (AL596163) similar to B. subtilis YabH protein [Listeria innocua]
Length = 291
Score = 64.3 bits (155), Expect = 1e-09
Identities = 73/266 (27%), Positives = 115/266 (42%), Gaps = 35/266 (13%)
Query: 10 KVNIFLKILHK-EGAYHKLISRMCLVKDKLKDIISVK----SALSFSLKGDFDCPLEENS 64
K+N+ L L+K E YH++ M + L D + ++ + +K F N
Sbjct: 10 KINLSLDALYKREDGYHEV--EMVMTTIDLADRLFLERLDEDKIVLDVKAHFIPEDRRNL 67
Query: 65 LFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIF 124
+++A +LKN K + I ++K+IP AGL GGS+DA L LN I+
Sbjct: 68 IYQAALLLKNRFNIKM----------GVRITIDKHIPVSAGLAGGSSDAAAALKGLNIIW 117
Query: 125 DWRLSLEELYSMGSLVGADTNFFISQYKSTN-ATSYGEVIENFEEEPLENRLEIYAPNHV 183
+ LS+EEL + S +G+D F + Y T AT GE I P + A +
Sbjct: 118 ELGLSIEELAEISSEIGSDIAFCV--YGGTALATGRGEKISALPNMP--GCWIVLAKPSI 173
Query: 184 FCSTKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNGL-----NDLLKPALLTNQALK 238
ST +Y+ + + E + +E +K D +G+ N L L N +K
Sbjct: 174 SVSTPTIYKELQVDNVEHPNTEKM----IESIKNGDLDGIFASTGNVLESVTLEKNPQVK 229
Query: 239 DIESEL----GKEWFFSGSGSAFFRL 260
I+ + + SGSG F L
Sbjct: 230 RIKDRMLAFGAEAALMSGSGPTVFAL 255
>ref|NP_653993.1| (NC_003995) hypothetical protein predicted by GeneMark [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 289
Score = 63.9 bits (154), Expect = 2e-09
Identities = 53/186 (28%), Positives = 92/186 (48%), Gaps = 18/186 (9%)
Query: 10 KVNIFLKILHK-EGAYH--KLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPLEENSLF 66
K+N+ L +L K + YH K+I + D+L+ + + + + + N +
Sbjct: 10 KINLSLDVLGKRQDGYHEVKMIMTTIDLADRLELMELAEDRIEILSHNRYVPDDQRNLAY 69
Query: 67 KALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDW 126
+A ++LK K ++I +EK IP AGL GGS+DA L LN++++
Sbjct: 70 QAAKLLKEKFNVKK----------GVSITIEKTIPVAAGLAGGSSDAAATLRGLNKLWNL 119
Query: 127 RLSLEELYSMGSLVGADTNFFISQYKSTN-ATSYGEVIENFEEEPLENRLEIYAPNHVFC 185
L++++L +G+ +G+D +F + Y T AT GE IE+ + P + I A H+
Sbjct: 120 GLTIDQLAELGAEIGSDVSFCV--YGGTAIATGRGEQIEHIKTPP--SCWVILAKPHIGV 175
Query: 186 STKAVY 191
T VY
Sbjct: 176 FTADVY 181
>ref|NP_371019.1| (NC_002758) hypothetical protein [Staphylococcus aureus subsp.
aureus Mu50]
ref|NP_373705.1| (NC_002745) hypothetical protein, similar to
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
[Staphylococcus aureus subsp. aureus N315]
ref|NP_645267.1| (NC_003923) ORFID:MW0450~hypothetical protein, similar to
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
[Staphylococcus aureus subsp. aureus MW2]
sp|Q99WA8|ISPE_STAAM 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
dbj|BAB41683.1| (AP003130) ORFID:SA0453~hypothetical protein, similar to
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
[Staphylococcus aureus subsp. aureus N315]
dbj|BAB56657.1| (AP003359) hypothetical protein [Staphylococcus aureus subsp.
aureus Mu50]
dbj|BAB94315.1| (AP004823) ORFID:MW0450~hypothetical protein, similar to
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
[Staphylococcus aureus subsp. aureus MW2]
Length = 282
Score = 63.2 bits (152), Expect = 3e-09
Identities = 53/171 (30%), Positives = 78/171 (44%), Gaps = 15/171 (8%)
Query: 4 VFEVYP-KVNIFLKILHKEG-AYHKLISRMCLV--KDKLKDIISVKSALSFSLKGDFDCP 59
++E P K+N L L K YH++ M V D+L + ++ ++
Sbjct: 2 IYETAPAKINFTLDTLFKRNDGYHEIEMIMTTVDLNDRLTFHKRKDRKIVVEIEHNYVPS 61
Query: 60 LEENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYH 119
+N ++A Q+ F++ V I ++K IP AGL GGS DA L
Sbjct: 62 NHKNLAYRAAQL---FIEQYQLKQGV-------TISIDKEIPVSAGLAGGSADAAATLRG 111
Query: 120 LNQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEP 170
LN++FD SLEEL +GS +G D F I K+ T GE IE + P
Sbjct: 112 LNRLFDIGASLEELALLGSKIGTDIPFCIYN-KTALCTGRGEKIEFLNKPP 161
>ref|NP_213622.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O67060|ISPE_AQUAE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||A70379 conserved hypothetical protein aq_915 - Aquifex aeolicus
gb|AAC07027.1| (AE000713) hypothetical protein [Aquifex aeolicus]
Length = 268
Score = 60.8 bits (146), Expect = 1e-08
Identities = 67/253 (26%), Positives = 119/253 (46%), Gaps = 22/253 (8%)
Query: 10 KVNIFLKILHK-EGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPLEENSLFKA 68
K+N+ L +L + YH++++ + D I ++ + ++ + P EEN ++K
Sbjct: 9 KINLGLWVLGRLPSGYHEILTLYQEIP--FYDEIYIREGV-LRVETNIGIPQEENLVYKG 65
Query: 69 LQILKNFLKSK-NFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWR 127
L+ + + N+S I ++KNIP AGLGGGS++ +L +N++
Sbjct: 66 LREFERITGIEINYS-----------IFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSP 114
Query: 128 LSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAPNHVFCST 187
LS EEL + + AD FF+ KS GEV+E E E + ++ + P V ST
Sbjct: 115 LSEEELRELVGSISADAPFFLLG-KSAIGRGKGEVLEPVETE-ISGKITLVIP-QVSSST 171
Query: 188 KAVYQAYKPETCFS--QAKEWLKKPSLECLKTYDRNGLNDLLKPALLTNQALKDIESELG 245
VY + + E + A+E +++ ++ + N L D+ + + LG
Sbjct: 172 GRVYSSLREEHFVTPEYAEEKIQRIISGEVEEIE-NVLGDIARELYPEINEVYRFVEYLG 230
Query: 246 KEWFFSGSGSAFF 258
+ F SGSGS +
Sbjct: 231 FKPFVSGSGSTVY 243
>ref|NP_463721.1| (NC_003210) similar to B. subtilis YabH protein [Listeria
monocytogenes EGD-e]
sp|Q8YAE1|ISPE_LISMO 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
emb|CAC98405.1| (AL591973) similar to B. subtilis YabH protein [Listeria
monocytogenes]
Length = 293
Score = 60.8 bits (146), Expect = 1e-08
Identities = 73/264 (27%), Positives = 114/264 (42%), Gaps = 31/264 (11%)
Query: 10 KVNIFLKILHK-EGAYHKLISRMCLVK--DKLKDIISVKSALSFSLKGDFDCPLEENSLF 66
K+N+ L L+K E YH++ M + D+L + + +K F N ++
Sbjct: 10 KINLSLDALYKREDGYHEVEMVMTTIDLADRLYLERLDEDKIVLDVKAHFIPEDRRNLIY 69
Query: 67 KALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDW 126
+A +LK K F + + I ++K+IP AGL GGS+DA L LN I++
Sbjct: 70 QAALLLK-----KRFDVKM-----GVRITIDKHIPVSAGLAGGSSDAAAALKGLNVIWEL 119
Query: 127 RLSLEELYSMGSLVGADTNFFISQYKSTN-ATSYGEVIENFEEEPLENRLEIYAPNHVFC 185
LS+EEL + S +G+D F + Y T AT GE I P + A +
Sbjct: 120 GLSIEELAEISSEIGSDIAFCV--YGGTALATGRGEKISALPNIP--GCWIVLAKPSISV 175
Query: 186 STKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNGL-----NDLLKPALLTNQALKDI 240
ST +Y+ E + + +E +K D +G+ N L L N +K I
Sbjct: 176 STPTIYK----ELQVDNVEHPDTQKMIESIKNGDLDGIFAATGNVLESVTLEKNPQVKRI 231
Query: 241 ESEL----GKEWFFSGSGSAFFRL 260
+ + + SGSG F L
Sbjct: 232 KDRMLAFGAEAALMSGSGPTVFAL 255
>ref|NP_283862.1| (NC_003116) hypothetical protein NMA1092 [Neisseria meningitidis
Z2491]
sp|Q9JUX8|ISPE_NEIMA 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||A81875 hypothetical protein NMA1092 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84355.1| (AL162755) hypothetical protein NMA1092 [Neisseria meningitidis
Z2491]
Length = 281
Score = 59.3 bits (142), Expect = 4e-08
Identities = 46/148 (31%), Positives = 74/148 (49%), Gaps = 16/148 (10%)
Query: 5 FEVYPKVNIFLKIL-HKEGAYHKLISRMCLVKDKLKDIISVKSALS--FSLKGDFD-CPL 60
F K+N+ L+I +E YH + S CL+ L+D + +K L D P
Sbjct: 10 FPAPAKLNLDLRITGRREDGYHNIESIFCLID--LQDTVYLKPRDDGKIILHNPVDGMPQ 67
Query: 61 EENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHL 120
E + ++A +L+ + ++ + I ++K IPT AGLGGGS+DA +L L
Sbjct: 68 EADLSYRAASLLQKYARTPT----------GVEIWLDKKIPTGAGLGGGSSDAATVLLVL 117
Query: 121 NQIFDWRLSLEELYSMGSLVGADTNFFI 148
N+ + L+ +L G+ +GAD FFI
Sbjct: 118 NRWWQCGLTQRQLIDSGAALGADVPFFI 145
>ref|NP_273915.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
sp|Q9JZW4|ISPE_NEIMB 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||B81149 conserved hypothetical protein NMB0874 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41285.1| (AE002439) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 281
Score = 58.5 bits (140), Expect = 7e-08
Identities = 46/148 (31%), Positives = 74/148 (49%), Gaps = 16/148 (10%)
Query: 5 FEVYPKVNIFLKIL-HKEGAYHKLISRMCLVKDKLKDIISVKSALS--FSLKGDFD-CPL 60
F K+N+ L+I +E YH + S CL+ L+D + +K L D P
Sbjct: 10 FSAPAKLNLDLRITGRREDGYHNIESIFCLID--LQDTVYLKPRDDGKIILHNPVDGMPQ 67
Query: 61 EENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHL 120
E + ++A +L+ + ++ + I ++K IPT AGLGGGS+DA +L L
Sbjct: 68 EVDLSYRAASLLQKYARNPA----------GVEIWLDKKIPTGAGLGGGSSDAATVLLVL 117
Query: 121 NQIFDWRLSLEELYSMGSLVGADTNFFI 148
N+ + L+ +L G+ +GAD FFI
Sbjct: 118 NRWWQCGLTQRQLIDSGAALGADVPFFI 145
>ref|NP_387927.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|P37550|ISPE_BACSU 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||S66075 conserved hypothetical protein yabH - Bacillus subtilis
dbj|BAA05281.1| (D26185) unknown [Bacillus subtilis]
emb|CAB11822.1| (Z99104) similar to hypothetical proteins [Bacillus subtilis]
Length = 289
Score = 58.2 bits (139), Expect = 9e-08
Identities = 53/190 (27%), Positives = 90/190 (46%), Gaps = 18/190 (9%)
Query: 10 KVNIFLKILHKE-GAYHKLISRMCLVK--DKLKDIISVKSALSFSLKGDFDCPLEENSLF 66
K+N+ L + K YH++ M + D+++ + + S F + N +
Sbjct: 10 KINLSLDVTRKRPDGYHEVEMIMTTIDLADRIELTELAEDEVRVSSHNRFVPDDQRNLAY 69
Query: 67 KALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDW 126
+A +++K+ K ++I + K IP AGL GGS+DA L LN++++
Sbjct: 70 QAAKLIKDRYNVKK----------GVSIMITKVIPVAAGLAGGSSDAAATLRGLNRLWNL 119
Query: 127 RLSLEELYSMGSLVGADTNFFISQYKSTN-ATSYGEVIENFEEEPLENRLEIYAPNHVFC 185
LS E L +G+ +G+D +F + Y T AT GE I++ P + I A +
Sbjct: 120 NLSAETLAELGAEIGSDVSFCV--YGGTALATGRGEKIKHISTPP--HCWVILAKPTIGV 175
Query: 186 STKAVYQAYK 195
ST VY+A K
Sbjct: 176 STAEVYRALK 185
>ref|NP_078439.1| (NC_002162) conserved hypothetical [Ureaplasma urealyticum]
pir||D82871 conserved hypothetical UU600 [imported] - Ureaplasma urealyticum
gb|AAF31014.1|AE002158_12 (AE002158) conserved hypothetical [Ureaplasma urealyticum]
Length = 265
Score = 57.4 bits (137), Expect = 2e-07
Identities = 52/176 (29%), Positives = 87/176 (48%), Gaps = 10/176 (5%)
Query: 94 IEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWRLSLEELY-SMGSLVGADTNFFISQYK 152
I ++K IP AGLGGGS++A ++ + I ++ E Y + + +GAD FF+S YK
Sbjct: 88 INIKKRIPIGAGLGGGSSNAAAIMKY---ILEFEGIKEINYKDVVNKLGADIPFFLSGYK 144
Query: 153 STNATSYGEVIENFEEEPLENRLEIYAPNHVFCSTKAVYQAYKPETCFSQAKEWLKKPSL 212
+ + YG V+E+ + + E+Y N V +TK V++ + + + K K
Sbjct: 145 TAYISDYGSVLEDLTGQ-FKLNYEVYLMN-VNVNTKIVFEKF-DDNSWHVIKNNFKTIIK 201
Query: 213 ECLKTYDRNGLNDLLKPALLTNQALKDIESELGKEWFF---SGSGSAFFRLKPMQK 265
+ N NDL + +K +EL + F+ SG+GS+F R+K K
Sbjct: 202 NLKENIVVNIHNDLQEYCFELYPNIKYKYNELLSDGFYTILSGAGSSFIRIKLKNK 257
>ref|NP_660520.1| (NC_004061) isopentenyl monophosphate kinase [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
gb|AAM67731.1| (AE014092) isopentenyl monophosphate kinase [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
Length = 292
Score = 57.0 bits (136), Expect = 2e-07
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 21/224 (9%)
Query: 10 KVNIFLKILH-KEGAYHKLISRMCLVK--DKLKDIISVKSALSFSLKGDFDCPLEENSLF 66
K+N+FL + + YH + S + D L I + K + + + ++ NS+
Sbjct: 10 KINLFLYVTGIRSDGYHYIQSLFQFLNYGDTLTIIPNTKGTIELFTESNSLVNIK-NSII 68
Query: 67 KALQILKNFLKSKNFSHSVIKSLDTLAIEV--EKNIPTQAGLGGGSTDAGGLLYHLNQIF 124
A ++LK + HS+ K ++ K IP +GLGGGS++A L LN ++
Sbjct: 69 TAAELLK-----EKALHSLGKKTSHFGAKIFLNKKIPIGSGLGGGSSNAATTLVVLNNLW 123
Query: 125 DWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAPNHVF 184
+ +L+EL + +G+D FI K+T GE++ + E I PN +
Sbjct: 124 KTKFTLQELAELSLKIGSDIPAFI-MGKTTIVEGIGEILYPIHRK--EKWYLIVYPN-IS 179
Query: 185 CSTKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNGLNDLLK 228
STK ++ Y S K +KKP L++ N +++K
Sbjct: 180 ISTKNIFSIY------SIKKNTIKKPIDFLLRSRFHNDFENVIK 217
>ref|NP_487270.1| (NC_003272) 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
[Nostoc sp. PCC 7120]
sp|Q8YS61|ISPE_ANASP 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
dbj|BAB74929.1| (AP003592) 4-diphosphocytidyl-2C-methyl-D-erythritol kinase [Nostoc
sp. PCC 7120]
Length = 317
Score = 55.8 bits (133), Expect = 5e-07
Identities = 53/197 (26%), Positives = 93/197 (46%), Gaps = 23/197 (11%)
Query: 10 KVNIFLKIL-HKEGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPL----EENS 64
K+N++L+I+ + YH+L+ M L L D I + S S ++ + P + N
Sbjct: 11 KINLYLEIIGDRPDGYHELV--MILQSIDLADEIEIHSLSSETIHVHCNHPQVPTDKSNL 68
Query: 65 LFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIF 124
+++A +++ H + I V K+IP AGL GGST+A +L ++ ++
Sbjct: 69 VYRAAELMVTRFPEAFTKHGGVD------ITVHKHIPVAAGLAGGSTNAAAVLVGIDLLW 122
Query: 125 DWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAP---- 180
+ L+ EL +GS +G+D F ++ + AT GE + PL + IY
Sbjct: 123 NLGLTQTELEELGSTLGSDVPFCVAG-GTVIATGRGEQL-----SPLPSLDHIYIVLGKY 176
Query: 181 NHVFCSTKAVYQAYKPE 197
+ ST Y+ Y+ E
Sbjct: 177 RSLEVSTAWAYKNYRQE 193
>ref|NP_439985.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|P72663|ISPE_SYNY3 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||S74513 hypothetical protein sll0711 - Synechocystis sp. (strain PCC 6803)
dbj|BAA16665.1| (D90899) ORF_ID:sll0711~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 315
Score = 55.5 bits (132), Expect = 6e-07
Identities = 58/195 (29%), Positives = 96/195 (48%), Gaps = 23/195 (11%)
Query: 10 KVNIFLKIL-HKEGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDF-DCPLEE---NS 64
K+N+FL+IL + +H+L+ M L L D I+V++ + ++ D PL N
Sbjct: 11 KINLFLEILGDRPDGFHELV--MVLQSIALGDKITVRANGTDDIRLSCGDSPLANDATNL 68
Query: 65 LFKALQILKNFLKSKNF--SHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQ 122
++A Q++ N NF +H +D I + K+IP AGL GGS DA +L L+
Sbjct: 69 AYRAAQLMIN-----NFPQAHDNYGGVD---ITLTKHIPMAAGLAGGSADAAAVLVGLDL 120
Query: 123 IFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAPNH 182
+++ L+ EL + + +G+D F I + AT GE+++ P N + H
Sbjct: 121 LWNLGLTRPELEQLAAQLGSDIPFCIGG-GTAIATGRGEILDPL---PDGNCFWVVLAKH 176
Query: 183 --VFCSTKAVYQAYK 195
+ ST YQ Y+
Sbjct: 177 RSIEVSTPWAYQTYR 191
>ref|NP_349504.1| (NC_003030) Isopentenyl monophosphate kinase, IPK [Clostridium
acetobutylicum]
sp|Q97F51|ISPE_CLOAB 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
gb|AAK80844.1|AE007787_10 (AE007787) Isopentenyl monophosphate kinase, IPK [Clostridium
acetobutylicum]
Length = 280
Score = 54.7 bits (130), Expect = 1e-06
Identities = 59/221 (26%), Positives = 93/221 (41%), Gaps = 26/221 (11%)
Query: 6 EVYPKVNIFLKILHK-EGAYHKLISRMCLVKDKLKDIISVKSALSFSLK---GDFDCPLE 61
+ Y KVNI L ++ K E YH L +M + L D++ ++ + +K + P
Sbjct: 4 KAYAKVNISLDVIGKREDGYHLL--KMIMQSINLYDVLDIR-IIDEGIKITSNRRNIPTN 60
Query: 62 ENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLN 121
+ ++ A + K F+ + + +I + K IP AGL GGS D +L +
Sbjct: 61 DKNI--AYRAAKLFMDTYKIDKGI-------SIHINKRIPVAAGLAGGSADGAAVLKAMR 111
Query: 122 QIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAPN 181
IF +S EEL ++G +GAD F I + GE I + ++ +
Sbjct: 112 DIFKKDVSDEELINLGVKIGADIPFCIVG-GTAFCEGIGEKITKLRS--MNGKIIVLVKP 168
Query: 182 HVFCSTKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNG 222
STK VY Y + C +K P E L NG
Sbjct: 169 DFGVSTKMVYTEY--DKCLD-----VKHPDSEGLVKAVNNG 202
>ref|NP_301011.1| (NC_002491) kinase [Chlamydophila pneumoniae J138]
dbj|BAA99162.1| (AP002548) kinase [Chlamydophila pneumoniae J138]
Length = 141
Score = 54.3 bits (129), Expect = 1e-06
Identities = 41/143 (28%), Positives = 72/143 (49%), Gaps = 14/143 (9%)
Query: 10 KVNIFLKILHKE-GAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPLE-ENSLFK 67
K+N+FLKI K +H+L + + D +S+K+++ SL + + L N ++K
Sbjct: 8 KLNLFLKIWGKRFDNFHELTTLYQAID--FGDTLSLKNSMKDSLSSNVNELLSPSNLIWK 65
Query: 68 ALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWR 127
+L+I + + ++ + K+IP Q+GLGGGS++A LY LN+ F
Sbjct: 66 SLEIFRRETQIHQ----------PVSWHLNKSIPLQSGLGGGSSNAATALYALNEHFQTH 115
Query: 128 LSLEELYSMGSLVGADTNFFISQ 150
+ + L +G+D FF Q
Sbjct: 116 IPITTLQLWAREIGSDVPFFFLQ 138
>ref|NP_353654.1| (NC_003062) AGR_C_1122p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_531332.1| (NC_003304) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
[Agrobacterium tumefaciens str. C58 (U. Washington)]
gb|AAK86439.1| (AE007997) AGR_C_1122p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL41648.1| (AE009031) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
[Agrobacterium tumefaciens str. C58 (U. Washington)]
Length = 299
Score = 54.3 bits (129), Expect = 1e-06
Identities = 71/275 (25%), Positives = 114/275 (40%), Gaps = 34/275 (12%)
Query: 2 THVFEVYP-KVNIFLKIL-HKEGAYHKLISRMCLVKDKLKDIISVKSAL--SFSLKGDFD 57
T E P K+N+ L + + YH L + + D+I ++ A SFS+ G F
Sbjct: 10 TETVEAAPAKINLALHVTGQRADGYHLLETLVTFTA--AGDMIRIRDAATDSFSISGPFG 67
Query: 58 CPLE-----ENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTD 112
L +N + +A IL++ L S + + I +EKN+P +G+GGGS D
Sbjct: 68 DLLSAGDSGDNLVTRARDILRDALASTG------QPARPVDIHLEKNLPVASGIGGGSAD 121
Query: 113 AGGLLYHLNQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEP-- 170
A L L + +D ++ E+L S+ +GAD ++ + A GE IE + P
Sbjct: 122 AAATLRGLLRHWDAAIAPEKLKSLALKLGADVPMCLAS-RPLIARGIGEDIEALTDLPEL 180
Query: 171 ---LENRLEIYAPNHVFCSTKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNGLNDLL 227
L N L+ + +F + + P W ++ L NDL
Sbjct: 181 SMVLANPLKAVSTPEIF---RRLQNKVNPHLPTPSTIGWATTGWMDFL----AQSRNDLQ 233
Query: 228 KPALLTNQALKDIESELGKEWF----FSGSGSAFF 258
PA + +I L +E SGSG+ F
Sbjct: 234 PPAQALLPEIGEITGLLSEEGATLVRMSGSGATCF 268
>ref|NP_231813.1| (NC_002505) kinase, GHMP family [Vibrio cholerae]
sp|Q9KQ23|ISPE_VIBCH 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||E82109 kinase, GHMP family VC2182 [imported] - Vibrio cholerae (group O1
strain N16961)
gb|AAF95327.1| (AE004289) kinase, GHMP family [Vibrio cholerae]
Length = 295
Score = 53.5 bits (127), Expect = 2e-06
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 16/174 (9%)
Query: 1 MTHVFEVYP---KVNIFLKIL-HKEGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDF 56
M H V+P K+N+FL I + YH L + + + I+ ++ + +L
Sbjct: 6 MIHGTTVWPSPAKLNLFLYITGRRANGYHDLQTLFQFLDHGDELTITANNSGNITLSPAL 65
Query: 57 -DCPLEENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGG 115
D LE+N ++KA LKN +S + I++ K +P G+GGGS++A
Sbjct: 66 ADVALEDNLIYKAAMALKNAAQSPLGAD----------IQLHKVLPMGGGIGGGSSNAAT 115
Query: 116 LLYHLNQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEE 169
L LN ++ LS ++L +G +GAD F + + A GE + E E
Sbjct: 116 TLVALNYLWQTGLSDDQLAEIGLALGADVPVFTRGF-AAFAEGVGEELSAVEPE 168
>ref|NP_287454.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
gb|AAG56066.1|AE005338_6 (AE005338) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
Length = 283
Score = 53.5 bits (127), Expect = 2e-06
Identities = 44/164 (26%), Positives = 73/164 (43%), Gaps = 23/164 (14%)
Query: 10 KVNIFLKIL-HKEGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPL-------- 60
K+N+FL I + YH L L + +S L+ D D L
Sbjct: 10 KLNLFLYITGQRADGYHTL--------QTLFQFLDYGDTISIELRDDGDIRLLTPVEGVE 61
Query: 61 -EENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYH 119
E+N + +A ++L + + I ++K +P GLGGGS++A +L
Sbjct: 62 HEDNLIVRAARLLMKTAADSGR----LPTGSGANISIDKRLPMXGGLGGGSSNAATVLVA 117
Query: 120 LNQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVI 163
LN ++ LS++EL MG +GAD F+ + + A GE++
Sbjct: 118 LNHLWQCGLSMDELAEMGLTLGADVPVFVRGH-AAFAEGVGEIL 160
>ref|NP_309740.1| (NC_002695) 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
[Escherichia coli O157:H7]
ref|NP_415726.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P24209|ISPE_ECOLI 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||B47706 ychB protein - Escherichia coli
gb|AAA24434.1| (M77237) ORF2 [Escherichia coli]
gb|AAC43434.1| (U18555) orfY gene product [Escherichia coli]
gb|AAC74292.1| (AE000219) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA36066.1| (D90756) 31k hypothetical protein (5' of prs) [Escherichia coli]
gb|AAF13867.1| (AF179284) isopentenyl monophosphate kinase [Escherichia coli]
emb|CAB64963.1| (AJ249325) isopentenyl monophosphate kinase [Escherichia coli]
gb|AAF29530.1|AF216300_1 (AF216300) 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
[Escherichia coli]
dbj|BAA94247.1| (AB037116) 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythrito l
kinase [Escherichia coli]
dbj|BAB35136.1| (AP002556) 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
[Escherichia coli O157:H7]
Length = 283
Score = 53.1 bits (126), Expect = 3e-06
Identities = 44/164 (26%), Positives = 73/164 (43%), Gaps = 23/164 (14%)
Query: 10 KVNIFLKIL-HKEGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPL-------- 60
K+N+FL I + YH L L + +S L+ D D L
Sbjct: 10 KLNLFLYITGQRADGYHTL--------QTLFQFLDYGDTISIELRDDGDIRLLTPVEGVE 61
Query: 61 -EENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYH 119
E+N + +A ++L + + I ++K +P GLGGGS++A +L
Sbjct: 62 HEDNLIVRAARLLMKTAADSGR----LPTGSGANISIDKRLPMGGGLGGGSSNAATVLVA 117
Query: 120 LNQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVI 163
LN ++ LS++EL MG +GAD F+ + + A GE++
Sbjct: 118 LNHLWQCGLSMDELAEMGLTLGADVPVFVRGH-AAFAEGVGEIL 160
>ref|NP_456289.1| (NC_003198) isopentenyl monophosphate kinase [Salmonella enterica
subsp. enterica serovar Typhi]
sp|Q8Z699|ISPE_SALTI 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
emb|CAD02134.1| (AL627271) isopentenyl monophosphate kinase [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 283
Score = 51.2 bits (121), Expect = 1e-05
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 94 IEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWRLSLEELYSMGSLVGADTNFFISQYKS 153
I +EK +P GLGGGS++A +L LN ++ LS++EL ++G +GAD F+ + +
Sbjct: 92 ISIEKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSIDELATLGLTLGADVPVFVRGH-A 150
Query: 154 TNATSYGEVI 163
A GE++
Sbjct: 151 AFAEGVGEIL 160
>ref|NP_460735.1| (NC_003197) isopentenyl monophosphate kinase [Salmonella
typhimurium LT2]
sp|P30753|ISPE_SALTY 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||S27732 conserved hypothetical protein 2 - Salmonella typhimurium
gb|AAA27195.1| (M77236) ORF2 [Salmonella typhimurium]
gb|AAL20694.1| (AE008779) isopentenyl monophosphate kinase [Salmonella typhimurium
LT2]
Length = 283
Score = 51.2 bits (121), Expect = 1e-05
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 94 IEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWRLSLEELYSMGSLVGADTNFFISQYKS 153
I +EK +P GLGGGS++A +L LN ++ LS++EL ++G +GAD F+ + +
Sbjct: 92 ISIEKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSIDELATLGLTLGADVPVFVRGH-A 150
Query: 154 TNATSYGEVI 163
A GE++
Sbjct: 151 AFAEGVGEIL 160
>pir||PC1178 hypothetical 21.8K protein (hemM 3' region) - Escherichia coli
dbj|BAA01106.1| (D10264) ORF3 [Escherichia coli]
Length = 203
Score = 50.8 bits (120), Expect = 2e-05
Identities = 26/70 (37%), Positives = 42/70 (59%), Gaps = 1/70 (1%)
Query: 94 IEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWRLSLEELYSMGSLVGADTNFFISQYKS 153
I ++K +P GLGGGS++A +L LN ++ LS++EL MG +GAD F+ + +
Sbjct: 33 ISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGH-A 91
Query: 154 TNATSYGEVI 163
A GE++
Sbjct: 92 AFAEGVGEIL 101
>ref|NP_540454.1| (NC_003317) 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE
[Brucella melitensis]
sp|Q8YFI3|ISPE_BRUME 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
gb|AAL52718.1| (AE009589) 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE
[Brucella melitensis]
Length = 299
Score = 50.4 bits (119), Expect = 2e-05
Identities = 40/138 (28%), Positives = 66/138 (46%), Gaps = 13/138 (9%)
Query: 10 KVNIFLKILHKEGAYHKLISRMCLVKDKLKDI-ISVKSALSFSLKGDFDCPLEE---NSL 65
K+N+ L + + + L+ + + D+ I I + SF++ G F + N +
Sbjct: 18 KINLALHVTGRRDDGYHLLDMLVVFADQGDRIHIEKAGSDSFTVSGPFASGIPAGRGNLV 77
Query: 66 FKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFD 125
KA L+ H L +AI +EKN+P +G+GGGS+DA L LN ++
Sbjct: 78 LKARDALRQ--------HGG-PDLSPVAIHLEKNLPIASGIGGGSSDAAATLLALNTLWQ 128
Query: 126 WRLSLEELYSMGSLVGAD 143
L E L ++G +GAD
Sbjct: 129 LDLDFEMLAAIGLSLGAD 146
>sp|Q9X3W5|ISPE_ZYMMO 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
Length = 282
Score = 49.7 bits (117), Expect = 3e-05
Identities = 61/268 (22%), Positives = 117/268 (42%), Gaps = 38/268 (14%)
Query: 8 YPKVNIFLKILHK-EGAYHKLISRMCLVKDKLKDIISVKS---ALSFSLKGDFDCPLE-- 61
Y K+N+ L + K YH L + KD DI+ ++ + ++ G F LE
Sbjct: 9 YAKINLALHVRGKMPNGYHALETIFAFAKDG--DILQAEANDTEDNLTITGPFSEGLEAN 66
Query: 62 -ENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHL 120
+N + +A+ L+ +K + +I ++K +P AG+GGGS DA +L +
Sbjct: 67 KDNLVLRAVTALRQACPNKIPAG--------FSIILDKRLPVAAGIGGGSADAAAMLRMI 118
Query: 121 NQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAP 180
Q +++ E + S+ + +GAD + GE + + LE + +
Sbjct: 119 GQ--HYQIPHELILSLANSLGADVPACVDSC-LVRGEGVGEKLTQIGDRSLEEKPLLLVN 175
Query: 181 NHVFCSTKAVYQAYKPETCFSQAKEWLKKPSLE---CLKTYDRNGLNDLLKPAL----LT 233
V CST +++ + + + + +L+ + R+G NDL PA +
Sbjct: 176 PRVSCSTPMIFKNW----------DGVDRGALDSDGSILGAARSGRNDLEPPARKILPII 225
Query: 234 NQALKDIESELGKEWF-FSGSGSAFFRL 260
+ ++ ++ + G + SGSG+ F L
Sbjct: 226 GEVVEWLQQQKGVSFSRMSGSGATCFAL 253
>ref|NP_245182.1| (NC_002663) unknown [Pasteurella multocida]
sp|P57833|ISPE_PASMU 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
gb|AAK02329.1| (AE006059) unknown [Pasteurella multocida]
Length = 295
Score = 49.7 bits (117), Expect = 3e-05
Identities = 53/192 (27%), Positives = 89/192 (45%), Gaps = 32/192 (16%)
Query: 10 KVNIFLKILHK-EGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPL-------- 60
K+N+FL I K + YH+L L + L ++ D + L
Sbjct: 25 KLNLFLYINGKRQDGYHEL--------QTLFQFVDFGDWLDIEVREDNEICLTPELPSLK 76
Query: 61 -EENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYH 119
E+N +++A ++L+ + N + +LD K +P +GLGGGS++A L
Sbjct: 77 NEDNLVYRAAKLLQ---QKTNCALGANLTLD-------KILPMGSGLGGGSSNAATALVA 126
Query: 120 LNQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYA 179
LN +++ +LS ++L +G ++GAD F+ + + A GE I EP E +
Sbjct: 127 LNYLWNTQLSTKQLAKLGLMLGADVPIFVHGH-AAFAEGVGEKITYC--EPKEKWYVVLK 183
Query: 180 PNHVFCSTKAVY 191
PN V ST V+
Sbjct: 184 PN-VSISTATVF 194
>ref|NP_240001.1| (NC_002528) hypothetical protein [Buchnera sp. APS]
dbj|BAB12887.1| (AP001118) hypothetical protein [Buchnera sp. APS]
Length = 294
Score = 48.9 bits (115), Expect = 6e-05
Identities = 39/142 (27%), Positives = 73/142 (50%), Gaps = 7/142 (4%)
Query: 10 KVNIFLKIL-HKEGAYHKLISRMCLVK--DKLKDIISVKSALSFSLKGDFDCPLEENSLF 66
K+N+FL + ++ YH + + + D+ K I + + + ++ NS+
Sbjct: 18 KINLFLYVTGRRKDGYHNIQTLFQFLDYGDQFKIIANKTGNIELFTEKKIFMNVQ-NSII 76
Query: 67 KALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDW 126
A ++LK K+ + S I ++KNIP +GLGGGS++A L LN++++
Sbjct: 77 IAAKLLK---KTALLQGKLQNSSYGAKIFLKKNIPMGSGLGGGSSNAATTLVVLNKLWNT 133
Query: 127 RLSLEELYSMGSLVGADTNFFI 148
+ +L+EL +G +GAD F+
Sbjct: 134 QYTLKELSLLGLRIGADVPGFV 155
>sp|P57267|ISPE_BUCAI 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
Length = 286
Score = 48.9 bits (115), Expect = 6e-05
Identities = 39/142 (27%), Positives = 73/142 (50%), Gaps = 7/142 (4%)
Query: 10 KVNIFLKIL-HKEGAYHKLISRMCLVK--DKLKDIISVKSALSFSLKGDFDCPLEENSLF 66
K+N+FL + ++ YH + + + D+ K I + + + ++ NS+
Sbjct: 10 KINLFLYVTGRRKDGYHNIQTLFQFLDYGDQFKIIANKTGNIELFTEKKIFMNVQ-NSII 68
Query: 67 KALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDW 126
A ++LK K+ + S I ++KNIP +GLGGGS++A L LN++++
Sbjct: 69 IAAKLLK---KTALLQGKLQNSSYGAKIFLKKNIPMGSGLGGGSSNAATTLVVLNKLWNT 125
Query: 127 RLSLEELYSMGSLVGADTNFFI 148
+ +L+EL +G +GAD F+
Sbjct: 126 QYTLKELSLLGLRIGADVPGFV 147
>pir||A64173 conserved hypothetical protein HI1608 - Haemophilus influenzae
(strain Rd KW20)
Length = 321
Score = 48.5 bits (114), Expect = 7e-05
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 27/191 (14%)
Query: 10 KVNIFLKILHK-EGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPLEENSLFKA 68
K+N+FL I K YH+L L + L S++ E+++
Sbjct: 37 KLNLFLYINGKFPNGYHEL--------QTLFQFLDFGDWLDISIR-------EQDNQIVL 81
Query: 69 LQILKNFLKSKNFSHSVIKSLDTLA-------IEVEKNIPTQAGLGGGSTDAGGLLYHLN 121
+ N N + K L A I ++K +P G+GGGS++A L LN
Sbjct: 82 TPEIPNLKTENNLIYRAAKLLQEKANIQLGANIHLDKILPMGGGVGGGSSNAATALVSLN 141
Query: 122 QIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAPN 181
++ LS++EL +G +GAD F+ + + A GE I EP E I P+
Sbjct: 142 YLWQANLSIDELAKLGLTLGADVPIFVHGH-AAFAEGVGEKITYC--EPAEKWFVILKPD 198
Query: 182 HVFCSTKAVYQ 192
ST ++Q
Sbjct: 199 DSI-STAVIFQ 208
>ref|NP_439750.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P45271|ISPE_HAEIN 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
gb|AAC23252.1| (U32834) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 313
Score = 48.5 bits (114), Expect = 7e-05
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 27/191 (14%)
Query: 10 KVNIFLKILHK-EGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPLEENSLFKA 68
K+N+FL I K YH+L L + L S++ E+++
Sbjct: 29 KLNLFLYINGKFPNGYHEL--------QTLFQFLDFGDWLDISIR-------EQDNQIVL 73
Query: 69 LQILKNFLKSKNFSHSVIKSLDTLA-------IEVEKNIPTQAGLGGGSTDAGGLLYHLN 121
+ N N + K L A I ++K +P G+GGGS++A L LN
Sbjct: 74 TPEIPNLKTENNLIYRAAKLLQEKANIQLGANIHLDKILPMGGGVGGGSSNAATALVSLN 133
Query: 122 QIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIYAPN 181
++ LS++EL +G +GAD F+ + + A GE I EP E I P+
Sbjct: 134 YLWQANLSIDELAKLGLTLGADVPIFVHGH-AAFAEGVGEKITYC--EPAEKWFVILKPD 190
Query: 182 HVFCSTKAVYQ 192
ST ++Q
Sbjct: 191 DSI-STAVIFQ 200
>ref|NP_218811.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
sp|O83386|ISPE_TREPA 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||B71333 conserved hypothetical protein TP0371 - syphilis spirochete
gb|AAC65356.1| (AE001216) conserved hypothetical protein [Treponema pallidum]
Length = 291
Score = 47.8 bits (112), Expect = 1e-04
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 90 DTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWRLSLEELYSMGSLVGADTNFFIS 149
D + + V K IP +GLGGGS DA LL L+ +F LS L + VG+D FF++
Sbjct: 83 DGVRVRVVKRIPAGSGLGGGSADAAALLCGLDTLFGTTLSARVLREVAYSVGSDVPFFLA 142
>ref|NP_215527.1| (NC_000962) hypothetical protein Rv1011 [Mycobacterium tuberculosis
H37Rv]
ref|NP_335476.1| (NC_002755) kinase, GHMP family [Mycobacterium tuberculosis
CDC1551]
sp|O05596|ISPE_MYCTU 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||F70603 hypothetical protein Rv1011 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB08138.1| (Z94752) hypothetical protein Rv1011 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45290.1| (AE006987) kinase, GHMP family [Mycobacterium tuberculosis CDC1551]
Length = 306
Score = 47.4 bits (111), Expect = 2e-04
Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 18/143 (12%)
Query: 10 KVNIFLKIL-HKEGAYHKLISRMCLVKDKLKDIISVKSALSFSLK----GDFDCPLEENS 64
KVN++L + +E YH+L + V L D ++V++A SL+ G P +E +
Sbjct: 13 KVNLYLAVGDRREDGYHELTTVFHAVS--LVDEVTVRNADVLSLELVGEGADQLPTDERN 70
Query: 65 L-FKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQI 123
L ++A +++ + ++I ++K+IP G+ GGS DA +L +N +
Sbjct: 71 LAWQAAELMAEH----------VGRAPDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSL 120
Query: 124 FDWRLSLEELYSMGSLVGADTNF 146
++ + +L + + +G+D F
Sbjct: 121 WELNVPRRDLRMLAARLGSDVPF 143
>ref|NP_518517.1| (NC_003295) PROBABLE ISOPENTENYL MONOPHOSPHATE KINASE
(4-CYTIDINE-5'-DIPHOSPHO-2-C-METHYL-D-ERYTHRITOL KINASE)
PROTEIN [Ralstonia solanacearum]
sp|Q8Y2E0|ISPE_RALSO 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
emb|CAD13924.1| (AL646059) PROBABLE ISOPENTENYL MONOPHOSPHATE KINASE
(4-CYTIDINE-5'-DIPHOSPHO-2-C-METHYL-D-ERYTHRITOL KINASE)
PROTEIN [Ralstonia solanacearum]
Length = 289
Score = 46.6 bits (109), Expect = 3e-04
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 94 IEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWRLSLEELYSMGSLVGADTNFFI 148
I +EK +P G+GGGS+DA L LN+++ L +L S+G +GAD FF+
Sbjct: 92 IALEKRLPMGGGIGGGSSDAATALLALNRLWGLDLPRAKLMSLGLRLGADVPFFL 146
>ref|NP_299922.1| (NC_002488) isopentenyl monophosphate kinase [Xylella fastidiosa
9a5c]
sp|Q9PA75|ISPE_XYLFA 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
pir||F82532 isopentenyl monophosphate kinase XF2645 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF85442.1|AE004071_10 (AE004071) isopentenyl monophosphate kinase [Xylella fastidiosa
9a5c]
Length = 298
Score = 46.2 bits (108), Expect = 4e-04
Identities = 24/55 (43%), Positives = 33/55 (59%)
Query: 94 IEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWRLSLEELYSMGSLVGADTNFFI 148
I VEK IP G GGGS+DA +L LN ++ RL + L ++G +GAD F+
Sbjct: 102 IFVEKRIPVGGGFGGGSSDAATVLLVLNALWHTRLDVAVLAALGLRLGADVPVFV 156
>ref|NP_301301.1| (NC_002677) putative isopentenyl monophosphate kinase
[Mycobacterium leprae]
sp|Q9CD51|ISPE_MYCLE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
emb|CAC29750.1| (AL583917) putative isopentenyl monophosphate kinase [Mycobacterium
leprae]
Length = 311
Score = 46.2 bits (108), Expect = 4e-04
Identities = 35/147 (23%), Positives = 75/147 (50%), Gaps = 18/147 (12%)
Query: 6 EVYPKVNIFLKILHK-EGAYHKLISRMCLVKDKLKDIISVKSALSFSL----KGDFDCPL 60
+V K+N++L + + YH+L++ V L D ++V++A SL +G P
Sbjct: 9 QVPGKINLYLAVGDCCDNGYHELVTVFHAVS--LVDQVTVRNADVLSLGLVGEGANHVPT 66
Query: 61 EENSL-FKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYH 119
+E+++ ++A +++ + ++I ++K+IP G+ GGS DA +L
Sbjct: 67 DEHNIAWRAAELMAEH----------VGRAPDVSIMIDKSIPVAGGMAGGSADAAAVLVA 116
Query: 120 LNQIFDWRLSLEELYSMGSLVGADTNF 146
+N +++ L +L + + +G+D F
Sbjct: 117 MNSLWELSLPRRDLCMLAAKLGSDVPF 143
>ref|NP_420149.1| (NC_002696) kinase, GHMP family, group 2 [Caulobacter crescentus
CB15]
sp|Q9A8L7|ISPE_CAUCR 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
gb|AAK23317.1| (AE005809) kinase, GHMP family, group 2 [Caulobacter crescentus
CB15]
Length = 295
Score = 45.4 bits (106), Expect = 6e-04
Identities = 53/191 (27%), Positives = 85/191 (43%), Gaps = 20/191 (10%)
Query: 10 KVNIFLKILHKEG-AYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPLE---ENSL 65
KVN+FL + +G YH + S M + + A +F G F + +N +
Sbjct: 15 KVNLFLHVGGPDGEGYHPISSLMVFADVGDRVNLQPADAPAFETSGPFGDQIPAGGDNLV 74
Query: 66 FKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFD 125
+A Q L + +I +EK++P AGLGGGS+DAG L L
Sbjct: 75 VRAGQAFHRRLGGPVPPYRLI---------LEKHLPIAAGLGGGSSDAGAALKLLRDALA 125
Query: 126 WRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIY--APNHV 183
LS ++L ++ + +GAD + + ++ A GE + P N + + AP+
Sbjct: 126 PALSDDDLEALAASLGADGAACL-RARALIAEGRGERLSPAPRLPELNAVLVNPGAPS-- 182
Query: 184 FCSTKAVYQAY 194
T AVY+AY
Sbjct: 183 --PTGAVYRAY 191
>ref|NP_662380.1| (NC_002932) 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
[Chlorobium tepidum TLS]
gb|AAM72722.1| (AE012906) 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
[Chlorobium tepidum TLS]
Length = 286
Score = 44.7 bits (104), Expect = 0.001
Identities = 24/72 (33%), Positives = 39/72 (53%)
Query: 94 IEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWRLSLEELYSMGSLVGADTNFFISQYKS 153
I++ K +P AGLGGGS+DA L L +++ + EL+ + +GAD +F+
Sbjct: 86 IKLLKRVPFGAGLGGGSSDAAATLNALCKLWQIDVPSAELHKLAVKLGADVPYFLEMKGL 145
Query: 154 TNATSYGEVIEN 165
A GE +E+
Sbjct: 146 AYAAGIGEELED 157
>ref|NP_641300.1| (NC_003919) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
[Xanthomonas axonopodis pv. citri str. 306]
gb|AAM35836.1| (AE011725) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
[Xanthomonas axonopodis pv. citri str. 306]
Length = 295
Score = 44.7 bits (104), Expect = 0.001
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 94 IEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWRLSLEELYSMGSLVGADTNFFI 148
I V+K IP G GGGS+DA +L LN ++ L+ + L +G +GAD F+
Sbjct: 99 IRVDKRIPAGGGFGGGSSDAATVLVALNALWGLGLAADALAELGLQLGADVPVFV 153
>gb|AAD21541.1| (AF088896) unknown [Zymomonas mobilis]
Length = 261
Score = 44.3 bits (103), Expect = 0.001
Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 93 AIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWRLSLEELYSMGSLVGADTNFFISQYK 152
+I ++K +P AG+GGGS DA +L + Q +++ E + S+ + +GAD +
Sbjct: 70 SIILDKRLPVAAGIGGGSADAAAMLRMIGQ--HYQIPHELILSLANSLGADVPACVDSC- 126
Query: 153 STNATSYGEVIENFEEEPLENRLEIYAPNHVFCSTKAVYQAYKPETCFSQAKEWLKKPSL 212
GE + + LE + + V CST +++ + + + + +L
Sbjct: 127 LVRGEGVGEKLTQIGDRSLEEKPLLLVNPRVSCSTPMIFKNW----------DGVDRGAL 176
Query: 213 E---CLKTYDRNGLNDLLKPAL----LTNQALKDIESELGKEWF-FSGSGSAFFRL 260
+ + R+G NDL PA + + ++ ++ + G + SGSG+ F L
Sbjct: 177 DSDGSILGAARSGRNDLEPPARKILPIIGEVVEWLQQQKGVSFSRMSGSGATCFAL 232
>ref|NP_405570.1| (NC_003143) putative 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase [Yersinia pestis]
sp|Q8ZEY1|ISPE_YERPE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
emb|CAC90828.1| (AJ414151) putative 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase [Yersinia pestis]
Length = 299
Score = 44.3 bits (103), Expect = 0.001
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 94 IEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWRLSLEELYSMGSLVGADTNFFISQYKS 153
I ++K +P GLGGGS++A +L LN ++ L+ E+L +G +GAD F+ + +
Sbjct: 99 ISIDKCLPMGGGLGGGSSNAATVLVALNLLWQCGLTDEQLADLGLTLGADVPVFVRGH-A 157
Query: 154 TNATSYGEVIENFEEEPLE 172
A GE ++ EP+E
Sbjct: 158 AFAEGIGEKLQ--PAEPVE 174
>ref|NP_636262.1| (NC_003902) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
[Xanthomonas campestris pv. campestris str. ATCC 33913]
gb|AAM40186.1| (AE012186) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
[Xanthomonas campestris pv. campestris str. ATCC 33913]
Length = 295
Score = 43.9 bits (102), Expect = 0.002
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 94 IEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWRLSLEELYSMGSLVGADTNFFI 148
+ V+K IP G GGGS+DA +L LN ++ L ++ L +G +GAD F+
Sbjct: 99 LRVDKRIPAGGGFGGGSSDAATVLVALNALWGLGLPVDTLAELGLRLGADVPVFV 153
>ref|NP_107741.1| (NC_002678) isopentenyl monophosphate kinase [Mesorhizobium loti]
sp|Q986C6|ISPE_RHILO 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
dbj|BAB53527.1| (AP003011) isopentenyl monophosphate kinase [Mesorhizobium loti]
Length = 295
Score = 42.0 bits (97), Expect = 0.007
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 16/148 (10%)
Query: 2 THVFEVYPKVNIFLKILHKEG-AYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFD--C 58
+ + + K+N+ L + + YH + S + + I++ + F++ G +
Sbjct: 7 SRTWHAHAKINLALHVTGRRADGYHLIDSLAVFTRFGDRVEIALADSDDFTVSGRYAPAV 66
Query: 59 PLEENSL-FKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDAGGLL 117
PL+ +L KA L+ S ++I++EKN+P +G+GGGS+DA +L
Sbjct: 67 PLDAGNLVLKARDALRREAGSGR--------TPPVSIKLEKNLPIASGVGGGSSDAAAVL 118
Query: 118 YHLNQIFDWRLSLEE--LYSMGSLVGAD 143
L Q W L +++ L +G +GAD
Sbjct: 119 RGLAQ--TWALDIDDAGLARIGLSLGAD 144
>ref|NP_384950.1| (NC_003047) PUTATIVE ISOPENTENYL MONOPHOSPHATE KINASE PROTEIN
[Sinorhizobium meliloti]
sp|Q92RM1|ISPE_RHIME 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
emb|CAC45416.1| (AL591785) PUTATIVE ISOPENTENYL MONOPHOSPHATE KINASE PROTEIN
[Sinorhizobium meliloti]
Length = 301
Score = 42.0 bits (97), Expect = 0.007
Identities = 68/289 (23%), Positives = 114/289 (38%), Gaps = 50/289 (17%)
Query: 5 FEVYPKVNIFLKILHKEGAYHKLISRMC-----------LVKDKLKDIISVKSALSFSLK 53
F K+N+ L ++ + H L+ + + D+ + +S + A S +
Sbjct: 13 FAAPAKINLALHVVGQRADGHHLLESLVTFAECGDRVGLIAADRDRFTVSGRFATDLSAE 72
Query: 54 GDFDCPLEENSLFKALQILKNFLKSKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSTDA 113
G+ N + +A +L+ L ++ + + + +EKN+P +G+GGGS DA
Sbjct: 73 GNGG-----NLVLRARDLLRRELAAQG------RMAGPVHLHLEKNLPIASGIGGGSADA 121
Query: 114 GGLLYHLNQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEP--- 170
L L ++ + L S+ +GAD + + A GE I + P
Sbjct: 122 AATLRGLLSLWGATVEAASLNSLALQLGADVPMCLDRGPLV-ARGIGEEITPLPDLPPFD 180
Query: 171 --LENRLEIYAPNHVFCS--TKAVYQAYKPETCFSQAKEWLKKPSLECLKTYDRNGLNDL 226
L N L + +F S K PE S A EWL ++ ++ NDL
Sbjct: 181 VVLVNPLVAVSTPVIFRSLVRKTNPPLVLPEDARSTA-EWL--TAMAAMR-------NDL 230
Query: 227 LKPAL-------LTNQALKDIESELGKEWFFSGSGSAFFRLKPMQKGGE 268
PA + AL+D + L + SGSG+ F L K E
Sbjct: 231 EPPARAHEPMIETVSNALRDAGAALVR---MSGSGATCFGLFTGMKSAE 276
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,807,975
Number of Sequences: 1026957
Number of extensions: 7309095
Number of successful extensions: 16079
Number of sequences better than 1.0e-02: 57
Number of HSP's better than 0.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 16026
Number of HSP's gapped (non-prelim): 58
length of query: 268
length of database: 324,149,939
effective HSP length: 119
effective length of query: 149
effective length of database: 201,942,056
effective search space: 30089366344
effective search space used: 30089366344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 96 (41.6 bits)