BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646060|ref|NP_208242.1| hypothetical protein
[Helicobacter pylori 26695]
(264 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208242.1| (NC_000915) hypothetical protein [Helicoba... 520 e-147
ref|NP_224062.1| (NC_000921) putative [Helicobacter pylori ... 464 e-130
ref|NP_282109.1| (NC_002163) hypothetical protein Cj0957c [... 192 3e-48
ref|NP_212401.1| (NC_001318) conserved hypothetical protein... 50 2e-05
ref|NP_606517.1| (NC_003485) hypothetical protein [Streptoc... 49 6e-05
ref|NP_268604.1| (NC_002737) hypothetical protein [Streptoc... 49 6e-05
ref|NP_207120.1| (NC_000915) poly E-rich protein [Helicobac... 45 0.001
ref|NP_476580.1| (NM_057232) ImpE2-P1 [Drosophila melanogas... 44 0.001
emb|CAD12772.1| (AJ420904) Ran-binding protein [Plasmodium ... 42 0.007
dbj|BAB85197.1| (AB079866) Titin-like protein [Bombyx mori] 42 0.009
ref|NP_113997.1| (NM_031809) cyclic nucleotide-gated channe... 42 0.009
>ref|NP_208242.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64701 hypothetical protein HP1451 - Helicobacter pylori (strain 26695)
gb|AAD08496.1| (AE000645) H. pylori predicted coding region HP1451 [Helicobacter
pylori 26695]
Length = 264
Score = 520 bits (1338), Expect = e-147
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MQNFIEIKAKTLEEALIQASIALNCPIINLQYEVIQTPSKGFLSIGKKEAIILAGVKESV 60
MQNFIEIKAKTLEEALIQASIALNCPIINLQYEVIQTPSKGFLSIGKKEAIILAGVKESV
Sbjct: 1 MQNFIEIKAKTLEEALIQASIALNCPIINLQYEVIQTPSKGFLSIGKKEAIILAGVKESV 60
Query: 61 KEIKEESVKETNTKEIHQSAEEKKQKLETETPQEEIITPKPSKKNPKEESHSGDKLHEIK 120
KEIKEESVKETNTKEIHQSAEEKKQKLETETPQEEIITPKPSKKNPKEESHSGDKLHEIK
Sbjct: 61 KEIKEESVKETNTKEIHQSAEEKKQKLETETPQEEIITPKPSKKNPKEESHSGDKLHEIK 120
Query: 121 QELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHP 180
QELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHP
Sbjct: 121 QELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHP 180
Query: 181 TYGYSIRLEISTFLQNQEKVMDTQLQSVIMTVHEVGKGQMKAPDGVLTYIALKKLRKAFP 240
TYGYSIRLEISTFLQNQEKVMDTQLQSVIMTVHEVGKGQMKAPDGVLTYIALKKLRKAFP
Sbjct: 181 TYGYSIRLEISTFLQNQEKVMDTQLQSVIMTVHEVGKGQMKAPDGVLTYIALKKLRKAFP 240
Query: 241 NKYVSIKTNLNDEKYIVINDFNNE 264
NKYVSIKTNLNDEKYIVINDFNNE
Sbjct: 241 NKYVSIKTNLNDEKYIVINDFNNE 264
>ref|NP_224062.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71818 hypothetical protein jhp1344 - Helicobacter pylori (strain J99)
gb|AAD06921.1| (AE001557) putative [Helicobacter pylori J99]
Length = 258
Score = 464 bits (1193), Expect = e-130
Identities = 240/264 (90%), Positives = 246/264 (92%), Gaps = 6/264 (2%)
Query: 1 MQNFIEIKAKTLEEALIQASIALNCPIINLQYEVIQTPSKGFLSIGKKEAIILAGVKESV 60
MQN IEIKAKTLEEALIQASIALNCPIINLQYEVIQ PSKGFL+IGKKEAIIL GVKESV
Sbjct: 1 MQNPIEIKAKTLEEALIQASIALNCPIINLQYEVIQMPSKGFLNIGKKEAIILVGVKESV 60
Query: 61 KEIKEESVKETNTKEIHQSAEEKKQKLETETPQEEIITPKPSKKNPKEESHSGDKLHEIK 120
KE+KEESVKE IHQ+AEEK Q L +TPQEEIITPKP KK PKEESH+GDKLHEIK
Sbjct: 61 KEVKEESVKE-----IHQNAEEK-QSLGIKTPQEEIITPKPPKKTPKEESHNGDKLHEIK 114
Query: 121 QELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHP 180
QELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHP
Sbjct: 115 QELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHP 174
Query: 181 TYGYSIRLEISTFLQNQEKVMDTQLQSVIMTVHEVGKGQMKAPDGVLTYIALKKLRKAFP 240
YGYSI LEISTFLQNQEKVM+ QLQS IMTVHEVGKGQMKAPDGVLTYIALKKLRKAFP
Sbjct: 175 AYGYSIHLEISTFLQNQEKVMEAQLQSTIMTVHEVGKGQMKAPDGVLTYIALKKLRKAFP 234
Query: 241 NKYVSIKTNLNDEKYIVINDFNNE 264
NKYVSIKTNLNDEKYIVINDFNNE
Sbjct: 235 NKYVSIKTNLNDEKYIVINDFNNE 258
>ref|NP_282109.1| (NC_002163) hypothetical protein Cj0957c [Campylobacter jejuni]
pir||D81370 hypothetical protein Cj0957c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73214.1| (AL139076) hypothetical protein Cj0957c [Campylobacter jejuni]
Length = 272
Score = 192 bits (488), Expect = 3e-48
Identities = 114/268 (42%), Positives = 168/268 (62%), Gaps = 12/268 (4%)
Query: 5 IEIKAKTLEEALIQASIALNCPIINLQYEVIQTPSKGFLSIGKKEAIILAGVKESV--KE 62
++I+A L+ AL +AS +L C +++L+YE+IQ P KGF G+K+AII A K+ + K
Sbjct: 1 MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRKKAIIEAKAKKRILKKN 60
Query: 63 IKEESVKETNTK-EIHQSAEEKKQKLETET--PQEEIITPKPSK------KNPKEESHSG 113
K+E N K E H+ +E K +++ E Q+E T K + + K ++
Sbjct: 61 PKKEFTSSKNHKPETHEPKQENKIEIKNEKNKSQKEKYTVKSDEIFDSFHRESKGVRNTQ 120
Query: 114 DKLHEIKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYL 173
D L EI+ +L L +KI E+ +Y+ +LI +DGED+AL+IG++ +RYKA+SYL
Sbjct: 121 DILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDGEDAALMIGKEAHRYKAISYL 180
Query: 174 LFNWIHPTYGYSIRLEISTFLQNQEKVMDTQLQSVIMTVHEVGKGQMKAPDGVLTYIALK 233
L NWI+ Y +RLEI+ FL+NQ + M LQSVI + G+GQ K DGVL IAL+
Sbjct: 181 LHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQSVIEKIKIHGRGQTKPLDGVLIKIALE 240
Query: 234 KLRKAFPNKYVSIKTNLNDEKYIVINDF 261
+LR FP+KYV IK N ND++++VINDF
Sbjct: 241 QLRAEFPDKYVGIKQN-NDQRFVVINDF 267
>ref|NP_212401.1| (NC_001318) conserved hypothetical protein [Borrelia burgdorferi]
pir||C70133 conserved hypothetical protein BB0267 - Lyme disease spirochete
gb|AAA85591.1| (U43739) orf37; Method: conceptual translation supplied by author
[Borrelia burgdorferi]
gb|AAC66681.1| (AE001137) conserved hypothetical protein [Borrelia burgdorferi]
Length = 634
Score = 50.4 bits (119), Expect = 2e-05
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 3 NFIEIKAKTLEEALIQASIALNCPIINLQYEVIQTPSKGFLSIGKKEAIILAGVKESVK- 61
+ +EI+A TLEEAL AS+ L+ P L YE++ S G L GKK+ I+A S K
Sbjct: 26 DLMEIEADTLEEALNDASLELSVPYKELDYEILLKGSNGILGYGKKKWKIVAYRNSSSKP 85
Query: 62 EIKEESVKETNTKEIHQSAEEKKQKLETETPQEEIITPK 100
++ +S ++ KE+ S E + ++ ++I+PK
Sbjct: 86 KVSLDSKNDSGEKEVISSDGEFFIRKSSKGVFLKVISPK 124
>ref|NP_606517.1| (NC_003485) hypothetical protein [Streptococcus pyogenes MGAS8232]
gb|AAL97016.1| (AE009971) hypothetical protein [Streptococcus pyogenes MGAS8232]
Length = 304
Score = 48.9 bits (115), Expect = 6e-05
Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 48/261 (18%)
Query: 10 KTLEEALIQASIALNCPIINLQYEVIQTPSKGFLSIGKKEA-IILAGVKESV-------- 60
KT+EEA+ L + +VI KGFL GKK A + + G+ +
Sbjct: 7 KTVEEAIETGLQELGLSRLKAHIKVISKEKKGFLGFGKKPAQVDIEGISDKTVYKADKKA 66
Query: 61 -----KEIKEESVKETNTKEIHQSAEEKKQKLE--------------------------T 89
+ I ++ N+ ++ + QKLE T
Sbjct: 67 TRGVPENINQKHAPAVNSADVEPEEIKATQKLEAEDTKVVPLMPEDSPAQTPSNLAETVT 126
Query: 90 ETPQEEIITPKPSKKNPKEESHSG--DKLHEIKQELKDLFSHLPYKIN---KVEVSLYEP 144
ET ++ P + P++ + G + + QE+ D + + Y+++ VE S
Sbjct: 127 ETKAQQPSIPVEESEVPQDAGNDGFSKDIEKAAQEVSDYVTKIIYEMDIEATVETSNNRR 186
Query: 145 GVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPTY--GYSIRLEISTFLQNQEKVMD 202
+ L I+ ++ +IG G K+L L N++H Y +S+ L + +++++ + +
Sbjct: 187 QINL-QIETPEAGRVIGYHGKVLKSLQLLAQNFLHDRYSKNFSVSLNVHDYVEHRTETLI 245
Query: 203 TQLQSVIMTVHEVGKGQMKAP 223
Q V V E G+ P
Sbjct: 246 DFTQKVAKRVLESGQDYTMDP 266
>ref|NP_268604.1| (NC_002737) hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK33325.1| (AE006491) hypothetical protein [Streptococcus pyogenes M1 GAS]
Length = 304
Score = 48.9 bits (115), Expect = 6e-05
Identities = 54/261 (20%), Positives = 104/261 (39%), Gaps = 48/261 (18%)
Query: 10 KTLEEALIQASIALNCPIINLQYEVIQTPSKGFLSIGKKEA-IILAGVKESV-------- 60
KT+EEA+ L + +VI KGFL GKK A + + G+ +
Sbjct: 7 KTVEEAIETGLQELGLSRLKAHIKVISKEKKGFLGFGKKPAQVDIEGISDKTVYKADKKA 66
Query: 61 -----KEIKEESVKETNTKEIHQSAEEKKQKLE--------------------------T 89
++I ++ N+ ++ + Q+LE T
Sbjct: 67 TRGVPEDINRQNTPAVNSADVEPEEIKATQRLEAEDTKVVPLMSEDSPAQTPSNLAETVT 126
Query: 90 ETPQEEIITPKPSKKNPKEESHSG--DKLHEIKQELKDLFSHLPYKIN---KVEVSLYEP 144
ET ++ P + P++ + G + + QE+ D + + Y+++ VE S
Sbjct: 127 ETKAQQPSIPVEESEVPQDAGNDGFSKDIEKAAQEVSDYVTKIIYEMDIEATVETSNNRR 186
Query: 145 GVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPTY--GYSIRLEISTFLQNQEKVMD 202
+ L I+ ++ +IG G K+L L N++H Y +S+ L + +++++ + +
Sbjct: 187 QINL-QIETPEAGRVIGYHGKVLKSLQLLAQNFLHDRYSKNFSVSLNVHDYVEHRTETLI 245
Query: 203 TQLQSVIMTVHEVGKGQMKAP 223
Q V V E G+ P
Sbjct: 246 DFTQKVAKRVLESGQDYTMDP 266
>ref|NP_207120.1| (NC_000915) poly E-rich protein [Helicobacter pylori 26695]
pir||B64560 poly E-rich protein - Helicobacter pylori (strain 26695)
gb|AAD07390.1| (AE000550) poly E-rich protein [Helicobacter pylori 26695]
Length = 505
Score = 44.7 bits (104), Expect = 0.001
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 57 KESVKEIKEESVKETNTKEIHQSAEEKKQKLETETPQEEIITPKPSKKN---------PK 107
KE VKE ++E VKE +E+ ++ +E+K+ + ET + E + K K PK
Sbjct: 179 KEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPK 238
Query: 108 EESHSGDKLHEIKQELKD 125
EE+ D + E QE K+
Sbjct: 239 EETQEQDPIKEETQENKE 256
>ref|NP_476580.1| (NM_057232) ImpE2-P1 [Drosophila melanogaster]
sp|P29681|IMP2_DROME 20-hydroxyecdysone protein precursor (20-HE)
pir||A37351 IMP-E2 protein precursor - fruit fly (Drosophila melanogaster)
gb|AAA63632.1| (M55099) 20-hydoxyecdysone [Drosophila melanogaster]
gb|AAF47780.1| (AE003478) ImpE2 gene product [Drosophila melanogaster]
gb|AAL28818.1| (AY061270) LD19609p [Drosophila melanogaster]
Length = 466
Score = 44.3 bits (103), Expect = 0.001
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 15 ALIQASIALN-CPIINLQYEVIQTPSKGFLSIGKKEAIILAGVKESVK--EIKEESVKET 71
ALI +A++ ++NL E I P + K+ + L+ VKE VK E+K E VK
Sbjct: 5 ALILVFLAISQARVLNLPKEAIDIPVA--IVEDKEPPVALSLVKEEVKAEEVKPEEVKPI 62
Query: 72 NTKEIHQSAEEKKQKLETETPQEEIITPKPSKKNPKEESHSGDKLHEIKQELKDLFSHLP 131
+E A++ K++++ E E PKP K+ +E D E+K+++++ + LP
Sbjct: 63 AQEE---KAKDLKEEVKPEIKPEIKEQPKPDIKDEIKEDLKADIKEELKEKIEEQINELP 119
>emb|CAD12772.1| (AJ420904) Ran-binding protein [Plasmodium falciparum]
Length = 280
Score = 42.0 bits (97), Expect = 0.007
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 47 KKEAIILAGVKESVKEIKEESVKETNTKEIHQSAEEKKQKLETETPQEEIITPKPSKKNP 106
KK+ VK+ VKE EE K+ TK+ S +EK++++E Q+E + K K+
Sbjct: 204 KKKEDEKENVKKDVKEDDEEKDKDDKTKDDDTSKDEKEKEVE----QKEDVKEKEEKEKE 259
Query: 107 KEESHSGDKLHEIKQELK 124
K++ S DK + ++ +K
Sbjct: 260 KDDKRSDDKKSDEEENIK 277
>dbj|BAB85197.1| (AB079866) Titin-like protein [Bombyx mori]
Length = 3239
Score = 41.6 bits (96), Expect = 0.009
Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 48 KEAIILAGVKESVKEIKEESVKETNTKEIHQSAEEKKQKLETETPQEEII-TPKPSKKNP 106
+E ++L V + KE +EE +E K + + E K++ + ETPQEE++ P P +K P
Sbjct: 860 QEEVVLKPVPKQ-KEPEEEKPEEVQLKPVKK---EGKRRPKEETPQEEVVLKPVPKQKEP 915
Query: 107 KEESHSGDKLHEIKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLI 160
+EE +L+ K ++ +H + ++ + +P L ++GE+ L++
Sbjct: 916 EEEKPRSSRLNITKFNIEFKNNHDCF--TELTPRIIQPLKALNVLEGENFELVV 967
>ref|NP_113997.1| (NM_031809) cyclic nucleotide-gated channel beta subunit 1 [Rattus
norvegicus]
emb|CAA04133.1| (AJ000496) cyclic nucleotide-gated channel beta subunit [Rattus
norvegicus]
Length = 1339
Score = 41.6 bits (96), Expect = 0.009
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 53 LAGVKESVKEIKEESVKETNTKEIHQSAEEKKQKLETETPQEEIITPKPSKKNPKEESHS 112
L ++E +E EE +E KE + EE+++K E E +EE K +K KEE +
Sbjct: 363 LPQIQEQQEEENEEKEEEEEEKEEKEEKEEEEEKEEEEKREEEKKKEKEEEKKEKEEEEN 422
Query: 113 GDKLHEIKQELKD 125
G++ + ++E K+
Sbjct: 423 GEEEEKEEKEEKE 435
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.312 0.133 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,632,214
Number of Sequences: 1026957
Number of extensions: 7115582
Number of successful extensions: 47912
Number of sequences better than 1.0e-02: 11
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 47774
Number of HSP's gapped (non-prelim): 71
length of query: 264
length of database: 324,149,939
effective HSP length: 119
effective length of query: 145
effective length of database: 201,942,056
effective search space: 29281598120
effective search space used: 29281598120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 96 (41.6 bits)