BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646063|ref|NP_208245.1| hypothetical protein
[Helicobacter pylori 26695]
         (303 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208245.1|  (NC_000915) hypothetical protein [Helicoba...   591  e-168
ref|NP_224065.1|  (NC_000921) putative [Helicobacter pylori ...   565  e-160

>ref|NP_208245.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64701 hypothetical protein HP1454 - Helicobacter pylori (strain 26695)
 gb|AAD08497.1| (AE000645) H. pylori predicted coding region HP1454 [Helicobacter
           pylori 26695]
          Length = 303

 Score =  591 bits (1523), Expect = e-168
 Identities = 303/303 (100%), Positives = 303/303 (100%)

Query: 1   MKKIILACLMAFVGANLSAEPKWYSKAYNKTNTQKGYLYGSGSATSKEASKQKALADLVA 60
           MKKIILACLMAFVGANLSAEPKWYSKAYNKTNTQKGYLYGSGSATSKEASKQKALADLVA
Sbjct: 1   MKKIILACLMAFVGANLSAEPKWYSKAYNKTNTQKGYLYGSGSATSKEASKQKALADLVA 60

Query: 61  SISVVVNSQIHIQKSRVDNKLKSSDSQTINLKTDDLELNNVEIVNQEVQKGIYYTRVRIN 120
           SISVVVNSQIHIQKSRVDNKLKSSDSQTINLKTDDLELNNVEIVNQEVQKGIYYTRVRIN
Sbjct: 61  SISVVVNSQIHIQKSRVDNKLKSSDSQTINLKTDDLELNNVEIVNQEVQKGIYYTRVRIN 120

Query: 121 QNLFLQGLRDKYNALYGQFSTLMPKVCKGVFLQQSKSMGDLLAKAMPIERILKAYSVPVG 180
           QNLFLQGLRDKYNALYGQFSTLMPKVCKGVFLQQSKSMGDLLAKAMPIERILKAYSVPVG
Sbjct: 121 QNLFLQGLRDKYNALYGQFSTLMPKVCKGVFLQQSKSMGDLLAKAMPIERILKAYSVPVG 180

Query: 181 SLENYEKIYYQNAFKPKVQITFDNNGDAEIKSALISAYARVLTPSDEEKLYQIKNEVFTD 240
           SLENYEKIYYQNAFKPKVQITFDNNGDAEIKSALISAYARVLTPSDEEKLYQIKNEVFTD
Sbjct: 181 SLENYEKIYYQNAFKPKVQITFDNNGDAEIKSALISAYARVLTPSDEEKLYQIKNEVFTD 240

Query: 241 SANGITRIRVVVSASDCQGTPVLNRSLEVDEKNKNFAITRLQSLLYKELKDYANKEGQGN 300
           SANGITRIRVVVSASDCQGTPVLNRSLEVDEKNKNFAITRLQSLLYKELKDYANKEGQGN
Sbjct: 241 SANGITRIRVVVSASDCQGTPVLNRSLEVDEKNKNFAITRLQSLLYKELKDYANKEGQGN 300

Query: 301 TGL 303
           TGL
Sbjct: 301 TGL 303



>ref|NP_224065.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71819 hypothetical protein jhp1347 - Helicobacter pylori (strain J99)
 gb|AAD06924.1| (AE001557) putative [Helicobacter pylori J99]
          Length = 303

 Score =  565 bits (1456), Expect = e-160
 Identities = 287/303 (94%), Positives = 295/303 (96%)

Query: 1   MKKIILACLMAFVGANLSAEPKWYSKAYNKTNTQKGYLYGSGSATSKEASKQKALADLVA 60
           MKKIILACL+AFVGANLSAEPKWYSKAYNKTN QKGYLYGSGSATSKEASKQKALADLVA
Sbjct: 1   MKKIILACLVAFVGANLSAEPKWYSKAYNKTNAQKGYLYGSGSATSKEASKQKALADLVA 60

Query: 61  SISVVVNSQIHIQKSRVDNKLKSSDSQTINLKTDDLELNNVEIVNQEVQKGIYYTRVRIN 120
           SISVVVNSQIHIQKSRVDNKLKSSDSQTINLKTDDLELNNVEIVNQE QKGIYYTRVRIN
Sbjct: 61  SISVVVNSQIHIQKSRVDNKLKSSDSQTINLKTDDLELNNVEIVNQEAQKGIYYTRVRIN 120

Query: 121 QNLFLQGLRDKYNALYGQFSTLMPKVCKGVFLQQSKSMGDLLAKAMPIERILKAYSVPVG 180
           QNLFLQGLRDKYNALYGQFSTLMPKVCKGVFLQQSKSMGDLLAKA P+ERILKAYSVPV 
Sbjct: 121 QNLFLQGLRDKYNALYGQFSTLMPKVCKGVFLQQSKSMGDLLAKAAPMERILKAYSVPVS 180

Query: 181 SLENYEKIYYQNAFKPKVQITFDNNGDAEIKSALISAYARVLTPSDEEKLYQIKNEVFTD 240
           SLENYEKIYYQNAFKPKV+I FD+N D EIK+AL+SAYARVLTPSDEEKLYQIKNEVFTD
Sbjct: 181 SLENYEKIYYQNAFKPKVRIAFDDNSDTEIKNALMSAYARVLTPSDEEKLYQIKNEVFTD 240

Query: 241 SANGITRIRVVVSASDCQGTPVLNRSLEVDEKNKNFAITRLQSLLYKELKDYANKEGQGN 300
           SANGITRIRV++SASDCQGTPVLNRSLEVDEKNKNFAITRLQSLLYKELK YANKEGQGN
Sbjct: 241 SANGITRIRVIISASDCQGTPVLNRSLEVDEKNKNFAITRLQSLLYKELKGYANKEGQGN 300

Query: 301 TGL 303
           TGL
Sbjct: 301 TGL 303



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.313    0.130    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,081,259
Number of Sequences: 1026957
Number of extensions: 6563002
Number of successful extensions: 14609
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14607
Number of HSP's gapped (non-prelim): 2
length of query: 303
length of database: 324,149,939
effective HSP length: 120
effective length of query: 183
effective length of database: 200,915,099
effective search space: 36767463117
effective search space used: 36767463117
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 97 (42.0 bits)