BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646064|ref|NP_208246.1| hypothetical protein
[Helicobacter pylori 26695]
(130 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208246.1| (NC_000915) hypothetical protein [Helicoba... 259 3e-69
pir||G64701 hypothetical protein HP1455 - Helicobacter pylo... 258 6e-69
ref|NP_224066.1| (NC_000921) putative [Helicobacter pylori ... 207 2e-53
>ref|NP_208246.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
gb|AAD08498.1| (AE000645) H. pylori predicted coding region HP1455 [Helicobacter
pylori 26695]
Length = 130
Score = 259 bits (663), Expect = 3e-69
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MWIKCAKSWAWLKSRVLMKRLAIALVLVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKF 60
MWIKCAKSWAWLKSRVLMKRLAIALVLVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKF
Sbjct: 1 MWIKCAKSWAWLKSRVLMKRLAIALVLVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKF 60
Query: 61 LVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDKIEIKASELKATFIDTDKVYVLLKI 120
LVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDKIEIKASELKATFIDTDKVYVLLKI
Sbjct: 61 LVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDKIEIKASELKATFIDTDKVYVLLKI 120
Query: 121 TKKHVALMNE 130
TKKHVALMNE
Sbjct: 121 TKKHVALMNE 130
>pir||G64701 hypothetical protein HP1455 - Helicobacter pylori (strain 26695)
Length = 136
Score = 258 bits (660), Expect = 6e-69
Identities = 129/130 (99%), Positives = 130/130 (99%)
Query: 1 MWIKCAKSWAWLKSRVLMKRLAIALVLVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKF 60
+WIKCAKSWAWLKSRVLMKRLAIALVLVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKF
Sbjct: 7 LWIKCAKSWAWLKSRVLMKRLAIALVLVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKF 66
Query: 61 LVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDKIEIKASELKATFIDTDKVYVLLKI 120
LVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDKIEIKASELKATFIDTDKVYVLLKI
Sbjct: 67 LVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDKIEIKASELKATFIDTDKVYVLLKI 126
Query: 121 TKKHVALMNE 130
TKKHVALMNE
Sbjct: 127 TKKHVALMNE 136
>ref|NP_224066.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71819 hypothetical protein jhp1348 - Helicobacter pylori (strain J99)
gb|AAD06925.1| (AE001557) putative [Helicobacter pylori J99]
Length = 113
Score = 207 bits (527), Expect = 2e-53
Identities = 103/113 (91%), Positives = 109/113 (96%)
Query: 18 MKRLAIALVLVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKFLVCGMSDILLSDMDYSL 77
MKRLA+AL+LVLGV WGKSLPKWAKDCSK ++IEKTQTKDEK LVCGMSDILLSDMDYSL
Sbjct: 1 MKRLAVALILVLGVVWGKSLPKWAKDCSKEMRIEKTQTKDEKILVCGMSDILLSDMDYSL 60
Query: 78 SSARQNALEKVMEAFKGDKIEIKASELKATFIDTDKVYVLLKITKKHVALMNE 130
SSARQNALEKVMEAFKGD+IEIKA ELKATFIDTDKVYVLL+ITKKHVALMNE
Sbjct: 61 SSARQNALEKVMEAFKGDRIEIKAGELKATFIDTDKVYVLLRITKKHVALMNE 113
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,082,633
Number of Sequences: 1026957
Number of extensions: 2380878
Number of successful extensions: 6496
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6493
Number of HSP's gapped (non-prelim): 3
length of query: 130
length of database: 324,149,939
effective HSP length: 106
effective length of query: 24
effective length of database: 215,292,497
effective search space: 5167019928
effective search space used: 5167019928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)