BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646064|ref|NP_208246.1| hypothetical protein
[Helicobacter pylori 26695]
         (130 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208246.1|  (NC_000915) hypothetical protein [Helicoba...   259  3e-69
pir||G64701  hypothetical protein HP1455 - Helicobacter pylo...   258  6e-69
ref|NP_224066.1|  (NC_000921) putative [Helicobacter pylori ...   207  2e-53
>ref|NP_208246.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 gb|AAD08498.1| (AE000645) H. pylori predicted coding region HP1455 [Helicobacter
           pylori 26695]
          Length = 130

 Score =  259 bits (663), Expect = 3e-69
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MWIKCAKSWAWLKSRVLMKRLAIALVLVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKF 60
           MWIKCAKSWAWLKSRVLMKRLAIALVLVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKF
Sbjct: 1   MWIKCAKSWAWLKSRVLMKRLAIALVLVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKF 60

Query: 61  LVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDKIEIKASELKATFIDTDKVYVLLKI 120
           LVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDKIEIKASELKATFIDTDKVYVLLKI
Sbjct: 61  LVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDKIEIKASELKATFIDTDKVYVLLKI 120

Query: 121 TKKHVALMNE 130
           TKKHVALMNE
Sbjct: 121 TKKHVALMNE 130
>pir||G64701 hypothetical protein HP1455 - Helicobacter pylori (strain 26695)
          Length = 136

 Score =  258 bits (660), Expect = 6e-69
 Identities = 129/130 (99%), Positives = 130/130 (99%)

Query: 1   MWIKCAKSWAWLKSRVLMKRLAIALVLVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKF 60
           +WIKCAKSWAWLKSRVLMKRLAIALVLVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKF
Sbjct: 7   LWIKCAKSWAWLKSRVLMKRLAIALVLVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKF 66

Query: 61  LVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDKIEIKASELKATFIDTDKVYVLLKI 120
           LVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDKIEIKASELKATFIDTDKVYVLLKI
Sbjct: 67  LVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDKIEIKASELKATFIDTDKVYVLLKI 126

Query: 121 TKKHVALMNE 130
           TKKHVALMNE
Sbjct: 127 TKKHVALMNE 136
>ref|NP_224066.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71819 hypothetical protein jhp1348 - Helicobacter pylori (strain J99)
 gb|AAD06925.1| (AE001557) putative [Helicobacter pylori J99]
          Length = 113

 Score =  207 bits (527), Expect = 2e-53
 Identities = 103/113 (91%), Positives = 109/113 (96%)

Query: 18  MKRLAIALVLVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKFLVCGMSDILLSDMDYSL 77
           MKRLA+AL+LVLGV WGKSLPKWAKDCSK ++IEKTQTKDEK LVCGMSDILLSDMDYSL
Sbjct: 1   MKRLAVALILVLGVVWGKSLPKWAKDCSKEMRIEKTQTKDEKILVCGMSDILLSDMDYSL 60

Query: 78  SSARQNALEKVMEAFKGDKIEIKASELKATFIDTDKVYVLLKITKKHVALMNE 130
           SSARQNALEKVMEAFKGD+IEIKA ELKATFIDTDKVYVLL+ITKKHVALMNE
Sbjct: 61  SSARQNALEKVMEAFKGDRIEIKAGELKATFIDTDKVYVLLRITKKHVALMNE 113
  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.320    0.132    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,082,633
Number of Sequences: 1026957
Number of extensions: 2380878
Number of successful extensions: 6496
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6493
Number of HSP's gapped (non-prelim): 3
length of query: 130
length of database: 324,149,939
effective HSP length: 106
effective length of query: 24
effective length of database: 215,292,497
effective search space: 5167019928
effective search space used: 5167019928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)