BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646066|ref|NP_208248.1| hypothetical protein
[Helicobacter pylori 26695]
(210 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208248.1| (NC_000915) hypothetical protein [Helicoba... 403 e-112
ref|NP_224068.1| (NC_000921) putative [Helicobacter pylori ... 399 e-110
ref|NP_281302.1| (NC_002163) putative lipoprotein [Campylob... 105 4e-22
ref|NP_231528.1| (NC_002505) conserved hypothetical protein... 52 6e-06
>ref|NP_208248.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64702 hypothetical protein HP1457 - Helicobacter pylori (strain 26695)
gb|AAD08499.1| (AE000645) H. pylori predicted coding region HP1457 [Helicobacter
pylori 26695]
Length = 210
Score = 403 bits (1036), Expect = e-112
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MLLKTKLKIISSVILSALLWVGCSSEMATYQNVNDATKNTTASINSTDLLLTANAMLDSM 60
MLLKTKLKIISSVILSALLWVGCSSEMATYQNVNDATKNTTASINSTDLLLTANAMLDSM
Sbjct: 1 MLLKTKLKIISSVILSALLWVGCSSEMATYQNVNDATKNTTASINSTDLLLTANAMLDSM 60
Query: 61 FSDPNFEQLKGKHLIEVSDVINDTTQPNLDMNLLTTEIARQLRLRSNGRFNITRASGGSG 120
FSDPNFEQLKGKHLIEVSDVINDTTQPNLDMNLLTTEIARQLRLRSNGRFNITRASGGSG
Sbjct: 61 FSDPNFEQLKGKHLIEVSDVINDTTQPNLDMNLLTTEIARQLRLRSNGRFNITRASGGSG 120
Query: 121 IAADSRMVKQREKERESEEYNQDTTVEKGTLKAADLSLSGKVSSIAASISSSRQRLDYDF 180
IAADSRMVKQREKERESEEYNQDTTVEKGTLKAADLSLSGKVSSIAASISSSRQRLDYDF
Sbjct: 121 IAADSRMVKQREKERESEEYNQDTTVEKGTLKAADLSLSGKVSSIAASISSSRQRLDYDF 180
Query: 181 TLSLTNRKTGEEVWSDVKPIVKNASNKRMF 210
TLSLTNRKTGEEVWSDVKPIVKNASNKRMF
Sbjct: 181 TLSLTNRKTGEEVWSDVKPIVKNASNKRMF 210
>ref|NP_224068.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71819 hypothetical protein jhp1350 - Helicobacter pylori (strain J99)
gb|AAD06927.1| (AE001557) putative [Helicobacter pylori J99]
Length = 210
Score = 399 bits (1024), Expect = e-110
Identities = 207/210 (98%), Positives = 208/210 (98%)
Query: 1 MLLKTKLKIISSVILSALLWVGCSSEMATYQNVNDATKNTTASINSTDLLLTANAMLDSM 60
M+LKTKLKIISSVILS LLWVGCSSEMATYQNVNDATKNTTASINSTDLLLTANAMLDSM
Sbjct: 1 MVLKTKLKIISSVILSTLLWVGCSSEMATYQNVNDATKNTTASINSTDLLLTANAMLDSM 60
Query: 61 FSDPNFEQLKGKHLIEVSDVINDTTQPNLDMNLLTTEIARQLRLRSNGRFNITRASGGSG 120
FSDPNFEQLKGKHLIEVSDVINDTTQPNLDMNLLTTEIARQLRLRSNGRFNITRASGGSG
Sbjct: 61 FSDPNFEQLKGKHLIEVSDVINDTTQPNLDMNLLTTEIARQLRLRSNGRFNITRASGGSG 120
Query: 121 IAADSRMVKQREKERESEEYNQDTTVEKGTLKAADLSLSGKVSSIAASISSSRQRLDYDF 180
I ADSRMVKQREKERESEEYNQDTTVEKGTLKAADLSLSGKVSSIAASISSSRQRLDYDF
Sbjct: 121 IEADSRMVKQREKERESEEYNQDTTVEKGTLKAADLSLSGKVSSIAASISSSRQRLDYDF 180
Query: 181 TLSLTNRKTGEEVWSDVKPIVKNASNKRMF 210
TLSLTNRKTGEEVWSDVKPIVKNASNKRMF
Sbjct: 181 TLSLTNRKTGEEVWSDVKPIVKNASNKRMF 210
>ref|NP_281302.1| (NC_002163) putative lipoprotein [Campylobacter jejuni]
pir||C81425 probable lipoprotein Cj0091 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72575.1| (AL139074) putative lipoprotein [Campylobacter jejuni]
Length = 207
Score = 105 bits (261), Expect = 4e-22
Identities = 70/206 (33%), Positives = 109/206 (51%), Gaps = 9/206 (4%)
Query: 6 KLKIISSVILSALLWVGCSSEMATYQNVNDATKNT--TASINSTDLLLTANAMLDSMFSD 63
K KI+ + ++ ALL+ GC+ T + K T ++ D A M++SM SD
Sbjct: 3 KTKILGTALIGALLFSGCAQTAYTDGKASQVKKGDALTLGLDRQDFESAAETMINSMLSD 62
Query: 64 PNFEQLKG--KHLIEVSDVINDTTQPNLDMNLLTTEIARQLRLRSNGRFNITRASGGSGI 121
P F +K + +I + V+NDT Q +D LT +I LR +G+F +T A G
Sbjct: 63 PAFANIKPGTRKVIAIGRVVNDTPQ-RIDTEKLTAKITSALR--KSGKFVLTSAVAAGG- 118
Query: 122 AADSRMVKQREKERESEEYNQDTTVEKGTLKAADLSLSGKVSSIAASISSSRQRLDYDFT 181
A DS RE R+++E+NQ T +KGTL + D SL+GK+ +S+ + +++Y F
Sbjct: 119 ALDSMSEDVREL-RDNDEFNQKTIAKKGTLVSPDFSLAGKIRQDNVKLSNGKTQVEYFFL 177
Query: 182 LSLTNRKTGEEVWSDVKPIVKNASNK 207
L LT+ +G W D + I K S+K
Sbjct: 178 LRLTDLTSGLVYWEDEQTIDKTGSSK 203
>ref|NP_231528.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||D82143 conserved hypothetical protein VC1894 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF95042.1| (AE004265) conserved hypothetical protein [Vibrio cholerae]
Length = 196
Score = 51.6 bits (122), Expect = 6e-06
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 14/200 (7%)
Query: 8 KIISSVILSALLWVGCSSEMATYQNVNDATKNTTASINSTDLLLTANAMLDSMFSDPNFE 67
K + +++ A++ GCS++++ Y + A + STDL A M+DSM +
Sbjct: 3 KSVIALLGLAVILGGCSNKVS-YGDAQ-AVETVNVDFGSTDLQKIAAEMVDSMMMSGSVS 60
Query: 68 QLK--GKHLIEVSDVINDTTQPNLDMNLLTTEIARQLRLRSNGRFNITRASGGSGIAADS 125
+ G+ ++ V + N T++ ++D +T I+ ++ ++G+F +
Sbjct: 61 AITRDGRPIVFVERIKNKTSE-HIDTESITDTIST--KMLNSGKFRFVDMDRVEAVR--- 114
Query: 126 RMVKQREKERESEEYNQDTTVEKGTLKAADLSLSGKVSSIAASISSSRQRLDYDFTLSLT 185
Q + E NQ T ++ G + A L G +SSI + S + + Y T+ L
Sbjct: 115 ---DQLNFQNNDELVNQSTAIQFGKMVGAQYMLYGNLSSIVKNAGSDKD-VYYKMTMRLM 170
Query: 186 NRKTGEEVWSDVKPIVKNAS 205
+ +TG W+D I K S
Sbjct: 171 DLQTGLIEWADETEIRKQQS 190
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.311 0.125 0.330
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,172,950
Number of Sequences: 1026957
Number of extensions: 3873998
Number of successful extensions: 12644
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12640
Number of HSP's gapped (non-prelim): 4
length of query: 210
length of database: 324,149,939
effective HSP length: 116
effective length of query: 94
effective length of database: 205,022,927
effective search space: 19272155138
effective search space used: 19272155138
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 94 (40.8 bits)