BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644777|ref|NP_206947.1| hypothetical protein
[Helicobacter pylori 26695]
         (68 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_206947.1|  (NC_000915) hypothetical protein [Helicoba...   137  4e-32
ref|NP_222857.1|  (NC_000921) putative [Helicobacter pylori ...   129  6e-30

>ref|NP_206947.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64538 hypothetical protein HP0148 - Helicobacter pylori (strain 26695)
 gb|AAD07229.1| (AE000536) H. pylori predicted coding region HP0148 [Helicobacter
          pylori 26695]
          Length = 68

 Score =  137 bits (344), Expect = 4e-32
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MKFLNGLAGNLLIVVILLCVAVFFTLKAIHIQKEQATNYYRYKDINALETKNTQNRANYE 60
          MKFLNGLAGNLLIVVILLCVAVFFTLKAIHIQKEQATNYYRYKDINALETKNTQNRANYE
Sbjct: 1  MKFLNGLAGNLLIVVILLCVAVFFTLKAIHIQKEQATNYYRYKDINALETKNTQNRANYE 60

Query: 61 LVNQGSKK 68
          LVNQGSKK
Sbjct: 61 LVNQGSKK 68



>ref|NP_222857.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71970 hypothetical protein jhp0136 - Helicobacter pylori (strain J99)
 gb|AAD05715.1| (AE001452) putative [Helicobacter pylori J99]
          Length = 68

 Score =  129 bits (325), Expect = 6e-30
 Identities = 64/68 (94%), Positives = 64/68 (94%)

Query: 1  MKFLNGLAGNLLIVVILLCVAVFFTLKAIHIQKEQATNYYRYKDINALETKNTQNRANYE 60
          MKFLNGLAGNLLIVVILLCV VFF LKAIHIQKEQATNYYRYKDINALE KNTQN ANYE
Sbjct: 1  MKFLNGLAGNLLIVVILLCVVVFFALKAIHIQKEQATNYYRYKDINALEAKNTQNHANYE 60

Query: 61 LVNQGSKK 68
          LVNQGSKK
Sbjct: 61 LVNQGSKK 68



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.322    0.136    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,998,637
Number of Sequences: 1026957
Number of extensions: 1038156
Number of successful extensions: 3530
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3528
Number of HSP's gapped (non-prelim): 2
length of query: 68
length of database: 324,149,939
effective HSP length: 44
effective length of query: 24
effective length of database: 278,963,831
effective search space: 6695131944
effective search space used: 6695131944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 91 (39.7 bits)