BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646072|ref|NP_208254.1| hypothetical protein
[Helicobacter pylori 26695]
(225 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208254.1| (NC_000915) hypothetical protein [Helicoba... 436 e-122
ref|NP_224074.1| (NC_000921) putative [Helicobacter pylori ... 422 e-117
>ref|NP_208254.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64702 hypothetical protein HP1463 - Helicobacter pylori (strain 26695)
gb|AAD08508.1| (AE000646) H. pylori predicted coding region HP1463 [Helicobacter
pylori 26695]
Length = 225
Score = 436 bits (1122), Expect = e-122
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MRATAIKIFSLSSALALLLHGCLSINLKQMLPEIRTYDLNASSFEITQCAKPLTEVRLIS 60
MRATAIKIFSLSSALALLLHGCLSINLKQMLPEIRTYDLNASSFEITQCAKPLTEVRLIS
Sbjct: 1 MRATAIKIFSLSSALALLLHGCLSINLKQMLPEIRTYDLNASSFEITQCAKPLTEVRLIS 60
Query: 61 ILSADLFNTKEIVFKAKDGQITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAG 120
ILSADLFNTKEIVFKAKDGQITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAG
Sbjct: 61 ILSADLFNTKEIVFKAKDGQITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAG 120
Query: 121 APTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSHSGVIIKHENISSLENKTTKT 180
APTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSHSGVIIKHENISSLENKTTKT
Sbjct: 121 APTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSHSGVIIKHENISSLENKTTKT 180
Query: 181 SKNGNQDFQESAIQSLQHVSVQAIQEAVSLIKKAIEAQSVSPLKK 225
SKNGNQDFQESAIQSLQHVSVQAIQEAVSLIKKAIEAQSVSPLKK
Sbjct: 181 SKNGNQDFQESAIQSLQHVSVQAIQEAVSLIKKAIEAQSVSPLKK 225
>ref|NP_224074.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71817 hypothetical protein jhp1356 - Helicobacter pylori (strain J99)
gb|AAD06932.1| (AE001558) putative [Helicobacter pylori J99]
Length = 225
Score = 422 bits (1084), Expect = e-117
Identities = 215/225 (95%), Positives = 221/225 (97%)
Query: 1 MRATAIKIFSLSSALALLLHGCLSINLKQMLPEIRTYDLNASSFEITQCAKPLTEVRLIS 60
MRATAIKIFS SSALALLL GCLSINLKQMLPEIRTYDLNASSFE+TQC KPLTEVRLIS
Sbjct: 1 MRATAIKIFSFSSALALLLQGCLSINLKQMLPEIRTYDLNASSFEMTQCPKPLTEVRLIS 60
Query: 61 ILSADLFNTKEIVFKAKDGQITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAG 120
ILSADLFNTKEIVFKA+DGQITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAG
Sbjct: 61 ILSADLFNTKEIVFKAQDGQITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAG 120
Query: 121 APTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSHSGVIIKHENISSLENKTTKT 180
APTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSHSGVIIKHENISSLENKTTKT
Sbjct: 121 APTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSHSGVIIKHENISSLENKTTKT 180
Query: 181 SKNGNQDFQESAIQSLQHVSVQAIQEAVSLIKKAIEAQSVSPLKK 225
SKNG+QDFQESAIQSLQHVS QA+QEA+SLIKKA+EAQSVSPLKK
Sbjct: 181 SKNGSQDFQESAIQSLQHVSTQAMQEAISLIKKAVEAQSVSPLKK 225
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.130 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,381,994
Number of Sequences: 1026957
Number of extensions: 4650645
Number of successful extensions: 10911
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10909
Number of HSP's gapped (non-prelim): 2
length of query: 225
length of database: 324,149,939
effective HSP length: 117
effective length of query: 108
effective length of database: 203,995,970
effective search space: 22031564760
effective search space used: 22031564760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 95 (41.2 bits)