BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646073|ref|NP_208255.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(271 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208255.1| (NC_000915) conserved hypothetical secrete... 536 e-151
ref|NP_224075.1| (NC_000921) putative [Helicobacter pylori ... 533 e-151
ref|NP_282776.1| (NC_002163) possible ABC transport system ... 93 4e-18
ref|NP_214056.1| (NC_000918) putative protein [Aquifex aeol... 86 4e-16
ref|NP_421123.1| (NC_002696) ABC transporter, periplasmic s... 75 6e-13
ref|NP_298590.1| (NC_002488) conserved hypothetical protein... 65 6e-10
ref|NP_643879.1| (NC_003919) conserved hypothetical protein... 64 2e-09
ref|NP_636025.1| (NC_003902) conserved hypothetical protein... 63 3e-09
ref|NP_354636.1| (NC_003062) AGR_C_3032p [Agrobacterium tum... 62 9e-09
ref|NP_213344.1| (NC_000918) putative protein [Aquifex aeol... 61 1e-08
ref|NP_385937.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 60 2e-08
ref|NP_251903.1| (NC_002516) hypothetical protein [Pseudomo... 54 1e-06
ref|NP_539880.1| (NC_003317) TOLUENE TOLERANCE PROTEIN TTG2... 52 5e-06
ref|NP_102526.1| (NC_002678) hypothetical protein [Mesorhiz... 52 7e-06
ref|NP_221079.1| (NC_000963) unknown [Rickettsia prowazekii... 48 1e-04
ref|NP_274958.1| (NC_003112) conserved hypothetical protein... 47 2e-04
ref|NP_360743.1| (NC_003103) ABC transporter substrate bind... 44 0.002
ref|NP_218014.1| (NC_000962) hypothetical protein Rv3497c [... 42 0.007
>ref|NP_208255.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||H64702 conserved hypothetical secreted protein HP1464 - Helicobacter
pylori (strain 26695)
gb|AAD08505.1| (AE000646) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 271
Score = 536 bits (1380), Expect = e-151
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY 60
MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY
Sbjct: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY 60
Query: 61 KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHNE 120
KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHNE
Sbjct: 61 KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHNE 120
Query: 121 EFYGSGDKGERILIFKEGLMDRLSGDANQVVQEVMKAIRNVNRILDDENVEKFKHILASV 180
EFYGSGDKGERILIFKEGLMDRLSGDANQVVQEVMKAIRNVNRILDDENVEKFKHILASV
Sbjct: 121 EFYGSGDKGERILIFKEGLMDRLSGDANQVVQEVMKAIRNVNRILDDENVEKFKHILASV 180
Query: 181 DDLIANLDSRKTQFDSLISNANNLVSNVNNVALDVDKRLKQGQYDFKAMFTPLIMQAQLS 240
DDLIANLDSRKTQFDSLISNANNLVSNVNNVALDVDKRLKQGQYDFKAMFTPLIMQAQLS
Sbjct: 181 DDLIANLDSRKTQFDSLISNANNLVSNVNNVALDVDKRLKQGQYDFKAMFTPLIMQAQLS 240
Query: 241 LRNIDNFVEKGSALIDKFDANPYKTIFGERK 271
LRNIDNFVEKGSALIDKFDANPYKTIFGERK
Sbjct: 241 LRNIDNFVEKGSALIDKFDANPYKTIFGERK 271
>ref|NP_224075.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71817 hypothetical protein jhp1357 - Helicobacter pylori (strain J99)
gb|AAD06933.1| (AE001558) putative [Helicobacter pylori J99]
Length = 271
Score = 533 bits (1374), Expect = e-151
Identities = 269/271 (99%), Positives = 271/271 (99%)
Query: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY 60
MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY
Sbjct: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY 60
Query: 61 KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHNE 120
KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHNE
Sbjct: 61 KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHNE 120
Query: 121 EFYGSGDKGERILIFKEGLMDRLSGDANQVVQEVMKAIRNVNRILDDENVEKFKHILASV 180
EFYGSGDKGERILIFKEGLMDRLSGDANQVVQEVMKAIRNVNRILDDENVEKFKHILASV
Sbjct: 121 EFYGSGDKGERILIFKEGLMDRLSGDANQVVQEVMKAIRNVNRILDDENVEKFKHILASV 180
Query: 181 DDLIANLDSRKTQFDSLISNANNLVSNVNNVALDVDKRLKQGQYDFKAMFTPLIMQAQLS 240
DDLIANLDSRKTQFDSLI+NANNLVSNVNNVALDVDKR+KQGQYDFKAMFTPLIMQAQLS
Sbjct: 181 DDLIANLDSRKTQFDSLINNANNLVSNVNNVALDVDKRVKQGQYDFKAMFTPLIMQAQLS 240
Query: 241 LRNIDNFVEKGSALIDKFDANPYKTIFGERK 271
LRNIDNFVEKGSALIDKFDANPYKTIFGERK
Sbjct: 241 LRNIDNFVEKGSALIDKFDANPYKTIFGERK 271
>ref|NP_282776.1| (NC_002163) possible ABC transport system periplasmic
substrate-binding protein [Campylobacter jejuni]
pir||F81261 probable ABC transport system periplasmic substrate-binding protein
Cj1648 [imported] - Campylobacter jejuni (strain NCTC
11168)
emb|CAB73636.1| (AL139079) possible ABC transport system periplasmic
substrate-binding protein [Campylobacter jejuni]
Length = 296
Score = 92.8 bits (229), Expect = 4e-18
Identities = 64/262 (24%), Positives = 129/262 (48%), Gaps = 17/262 (6%)
Query: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDG-KYYEYVVYTDKDLGGIATNSPIN 59
ME NY +G F +GFILWLG ++ KYYE ++T + + G+ +P+
Sbjct: 1 MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYE--IHTQESVAGLGIKAPVR 58
Query: 60 YKGIQVGNVIKVG-FAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALE-QS 117
G++VG+V ++ + +D++GV + + +K++ I++D+ + +G GLKF+ L+ S
Sbjct: 59 LLGVEVGSVEEISIYNQDELGV-NIRIKVKNNTPIKEDTFATLQLQGITGLKFIQLQGGS 117
Query: 118 HNEEFYGSGDKGERILIFKEGLMDRLSGDANQVVQEVMKAIRNVNRILDDENVEKFKHIL 177
N + S ++ FKE + + + + V A +L ++N++ + +L
Sbjct: 118 KNSKDLVSMQGKLPVIPFKESFLATIDRQSEHIFSLVKTADDKSKELLSEKNLKNLEILL 177
Query: 178 ASVDDLIANLDSRKTQFDSLISNANNLVSNVNNVALDVDKRLKQGQYDFKAMFTPLIMQA 237
++ +L ANL+ +N+ NL N++N +L + K + F +
Sbjct: 178 QNLAELSANLN----------ANSKNLSLNLSNASLKIGKMADNISLSAQ-NFNSSLKNI 226
Query: 238 QLSLRNIDNFVEKGSALIDKFD 259
+ S + NF++K ++ +D
Sbjct: 227 KESTMILKNFIKKADEKLNTYD 248
>ref|NP_214056.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||A70433 hypothetical protein aq_1533 - Aquifex aeolicus
gb|AAC07452.1| (AE000744) putative protein [Aquifex aeolicus]
Length = 300
Score = 85.9 bits (211), Expect = 4e-16
Identities = 59/259 (22%), Positives = 126/259 (47%), Gaps = 12/259 (4%)
Query: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY 60
+E VNY L+G LF L + + F+L+L ++ K+ Y++YT + + G+ T + + Y
Sbjct: 5 IEGRVNYILVG-LFILLGLGVTLFVLFLMTDIMEREKFRPYLIYTTQSVEGLNTGAAVYY 63
Query: 61 KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHNE 120
KG+QVG V ++ AK++ ++++ ++I K+R + +G GL ++ LE
Sbjct: 64 KGVQVGKVKEIKIAKNQ-ELIKIKVLIDKDFKVRDGLVATLGVQGITGLAYINLEYKEGY 122
Query: 121 EFYGSGDKGERILIFKEGLMDRLSGDANQVVQEVMKAIRNVNRILDDENVEKFKHILASV 180
+ ++ ++ + + +L+ +++ + + + N+ + +EN E+ +L
Sbjct: 123 KLGRDPEENLPVIPMEPSELQKLTQSLPELLSKTDELLTNLGKFFSEENAEEISKVL--- 179
Query: 181 DDLIANLDSRKTQFDSLISNANNLVSNVNNVALDVDKRLKQGQYDFKAMFTPLIMQAQLS 240
N + F+ L N+ V + + DK+L G+ + K + L L+
Sbjct: 180 ----KNTNKTLKSFEELSGKLENISLRVEKLVANADKKL--GELEVKKLNEVLEEYKNLA 233
Query: 241 LRNIDNFVEKGSALIDKFD 259
+ ++ FV+ S L +K D
Sbjct: 234 V-EVEKFVKNLSNLSEKVD 251
>ref|NP_421123.1| (NC_002696) ABC transporter, periplasmic substrate-binding protein,
putative [Caulobacter crescentus CB15]
gb|AAK24291.1| (AE005902) ABC transporter, periplasmic substrate-binding protein,
putative [Caulobacter crescentus CB15]
Length = 312
Score = 75.5 bits (184), Expect = 6e-13
Identities = 67/298 (22%), Positives = 121/298 (40%), Gaps = 38/298 (12%)
Query: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY 60
MER+ NY L+G + + +V F +WL L + Y Y + + G++ +++
Sbjct: 1 MERNANYALVGAISLALFMGLVIFAVWLAKLSF-NRDYDVYDILFVGPVRGLSQGGEVHF 59
Query: 61 KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQ-SHN 119
GI+VG V ++ K V + + S V I+ DS + +G G+ ++ + + N
Sbjct: 60 NGIKVGEVTRIELDKTDTNRVIARVRVTSDVPIKVDSYATLEPQGITGVNYVQITAGAPN 119
Query: 120 EEFYGSGDKGERILIF---KEGLMDRLSGDANQVVQEVMKAIRNVNRILDDENVEKF--- 173
+E K ++ + + L D L G V+ ++A+ VNR+L D N++ F
Sbjct: 120 KELLKDTVKTGKVPVIRTQRSALSDLLEG-GGTVLTRTIEALDRVNRVLSDRNIKSFGAT 178
Query: 174 --------------KHILASVDDLIANLDSRKTQFDSLISNANNLVSNVNNVAL----DV 215
K ILA + ++D L ++AN LV L D
Sbjct: 179 LTNVQAVTQEMRDRKEILADAQKALQSIDQTAQSITELSNSANTLVDGDAKRTLKELGDA 238
Query: 216 DKRLKQGQYDFKAMFTPL-----------IMQAQLSLRNIDNFVEKGSALIDKFDANP 262
L+ D + M T L + Q ++ + + E L+ + + NP
Sbjct: 239 AAELRATAKDARGMVTKLEGPASDFATTGLPQLSSAIVTLQSAAESLDRLVGEVEQNP 296
>ref|NP_298590.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||F82698 conserved hypothetical protein XF1301 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84110.1|AE003963_7 (AE003963) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 308
Score = 65.5 bits (158), Expect = 6e-10
Identities = 50/269 (18%), Positives = 111/269 (40%), Gaps = 24/269 (8%)
Query: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY 60
ME NY LIG L + ++ F LW D + Y V + + G++ SP+ Y
Sbjct: 1 METKANYVLIGSFTILTGLALLIFGLWAAKYS-SDRTWQNYRVVFREAVTGLSVGSPVQY 59
Query: 61 KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHNE 120
GI +G++ ++ A + V + + S+ ++KD++ ++ G + L
Sbjct: 60 NGIAIGSITQLTLAPNDPRQVIAHIRVNSTTPVKKDTRAKLAITSLTGPSIIQLSG---- 115
Query: 121 EFYGSGDKGERILIFKE---------GLMDRLSGDANQVVQEVMKAIRNVNRILDDENVE 171
G+ + I+K+ + ++ AN +V+ + +L D+NV
Sbjct: 116 ---GTPESPSLTSIYKDDAPIIQTTPSALQNITDTANDIVERLYD-------VLSDKNVA 165
Query: 172 KFKHILASVDDLIANLDSRKTQFDSLISNANNLVSNVNNVALDVDKRLKQGQYDFKAMFT 231
IL ++ + + T +L+++A++ +N + ++Q +
Sbjct: 166 AISTILQNMQKISGQVSDSDTGLKALLTSAHDATRQLNAALATTNGTVQQLDNNLVKQLP 225
Query: 232 PLIMQAQLSLRNIDNFVEKGSALIDKFDA 260
++ + + +L ID ++++D A
Sbjct: 226 VILNKLEATLTKIDATASNANSILDNNQA 254
>ref|NP_643879.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM38415.1| (AE012007) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 308
Score = 63.5 bits (153), Expect = 2e-09
Identities = 55/267 (20%), Positives = 112/267 (41%), Gaps = 17/267 (6%)
Query: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY 60
ME NY LIG + + ++ F LW D + +Y V + + G++ SP+ Y
Sbjct: 1 METKANYVLIGAFTIVAGLALLLFGLWAAKYS-SDRTWQQYRVVFREAVTGLSVGSPVQY 59
Query: 61 KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHNE 120
GI VG++ ++ A + V + + S+ I+ D++ ++ G + L E
Sbjct: 60 NGIAVGSITELTLAPNDPRQVVAHVRVNSTTPIKSDTRAKLAITSLTGPSIIQLSGGTPE 119
Query: 121 -EFYGSGDKGER-ILIFKEGLMDRLSGDANQVVQEVMKAIRNVNRILDDENVEKFKHILA 178
+ DK + I+ + ++ AN++V+ ++++L D+NV L
Sbjct: 120 APALTTIDKSDAPIIQTTPSALQNITDTANRIVE-------RMDQMLSDKNVASISATLQ 172
Query: 179 SVDDLIANLDSRKTQFDSLISNANNLVSNV-------NNVALDVDKRLKQGQYDFKAMFT 231
+++ + + R +LI +A + N+ N +D+ L Q
Sbjct: 173 NLEKISGGIADRDEGMQALIVSARDAARNLDTTLTTTNGTIKRLDQNLVQQLPGILEKLD 232
Query: 232 PLIMQAQLSLRNIDNFVEKGSALIDKF 258
+++ + N DN + + A I+ F
Sbjct: 233 ATLVKLDSAAGNADNILGENRAAINSF 259
>ref|NP_636025.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM39949.1| (AE012161) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 308
Score = 63.2 bits (152), Expect = 3e-09
Identities = 55/267 (20%), Positives = 112/267 (41%), Gaps = 17/267 (6%)
Query: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY 60
ME NY LIG + + ++ F LW D + +Y V + + G++ SP+ Y
Sbjct: 1 METKANYVLIGAFTIVAGLALLLFGLWAAKYS-SDRTWQQYRVVFREAVTGLSVGSPVQY 59
Query: 61 KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHNE 120
GI VG++ ++ A + V + + S+ I+ D++ ++ G + L E
Sbjct: 60 NGIAVGSITELTLAPNDPRQVVAHVRVNSTTPIKSDTRAKLAITSLTGPSIIQLSGGTPE 119
Query: 121 -EFYGSGDKGER-ILIFKEGLMDRLSGDANQVVQEVMKAIRNVNRILDDENVEKFKHILA 178
+ DK + I+ + ++ AN++V+ ++++L D+NV L
Sbjct: 120 APSLTTIDKSDAPIIQTTPSALQNITDTANRIVE-------RMDQMLSDKNVASITATLQ 172
Query: 179 SVDDLIANLDSRKTQFDSLISNANNLVSNV-------NNVALDVDKRLKQGQYDFKAMFT 231
+++ + + R +LI +A + N+ N +D+ L Q
Sbjct: 173 NLEKISGGIADRDEGMQALIVSARDAARNLDTTLTTTNGTIKRLDQNLVQQLPGILEKLD 232
Query: 232 PLIMQAQLSLRNIDNFVEKGSALIDKF 258
+++ + N DN + + A I+ F
Sbjct: 233 ATLVKLDSAAGNADNILGENRAAINSF 259
>ref|NP_354636.1| (NC_003062) AGR_C_3032p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_532330.1| (NC_003304) ABC transporter, substrate binding protein
[Agrobacterium tumefaciens str. C58 (U. Washington)]
gb|AAK87421.1| (AE008086) AGR_C_3032p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL42646.1| (AE009121) ABC transporter, substrate binding protein
[Agrobacterium tumefaciens str. C58 (U. Washington)]
Length = 456
Score = 61.6 bits (148), Expect = 9e-09
Identities = 54/241 (22%), Positives = 96/241 (39%), Gaps = 34/241 (14%)
Query: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY 60
ME NYT++G + + GF+ W+ G G + VV G++ SP+ +
Sbjct: 1 METKANYTIVGIFTLIVIAAAFGFVYWMAEFGRG-GPTAQLVVRIPGSANGLSVGSPVRF 59
Query: 61 KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHNE 120
GI VG V + +D +++ + ++ + +G G ++ L
Sbjct: 60 NGIPVGTVRGLAIDRDDPAYSIAFTEVQADAPVFPSTRAVLEIQGLTGAAYIELS----- 114
Query: 121 EFYGSGDKGERIL--IFKEGLMDRLSGD----------ANQVVQEVMKAIRNVNRILDD- 167
G GERIL + G+ L+ D A+++++ AI + + D
Sbjct: 115 ---GGNKDGERILQKSVESGVPAELTADLSSVTNLLATADKILKRADGAIGELQGFVQDA 171
Query: 168 --------ENVEKFKHILAS----VDDLIANLDSRKTQFDSLISNANNLVSNVNNVALDV 215
N EKF LA+ + + IA+L S T S+ + ++ V N+ V
Sbjct: 172 RGPLTQTVRNAEKFSDALAANSDGIKNFIASLSSLSTTVQSVSVRLDGTLTAVENLVKAV 231
Query: 216 D 216
D
Sbjct: 232 D 232
>ref|NP_213344.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||D70344 hypothetical protein aq_494 - Aquifex aeolicus
gb|AAC06746.1| (AE000692) putative protein [Aquifex aeolicus]
Length = 253
Score = 60.8 bits (146), Expect = 1e-08
Identities = 50/181 (27%), Positives = 87/181 (47%), Gaps = 13/181 (7%)
Query: 12 GLFFLCLVCMVGF-ILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINYKGIQVGNVIK 70
G F + + F +L G + K EY+VY D ++ G++ + + G++ G V +
Sbjct: 46 GAFVVAVSLAFAFLVLTFGEIPFFQPKMKEYLVYFD-EVAGLSKGAEVRVSGVRAGKVKE 104
Query: 71 VGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHNEEFYGSGDKGE 130
+ + KV VV +K + I +D+ ++ + G MG K+LA++ E SG+
Sbjct: 105 IILERGKVKVV---FEVKEEIPIYRDAIASIGTLGLMGDKYLAVKPGSPE----SGELPP 157
Query: 131 RILIFKEGLM---DRLSGDANQVVQEVMKAIRNVNRILDDENVEKFKHILASVDDLIANL 187
R I + D+L Q +E K +N+N IL EN E + +A ++ LI NL
Sbjct: 158 RSEIKNVKTVSDTDKLIASLTQTAEEFKKVAQNLNTIL-LENRENLRQTIAHLNYLIKNL 216
Query: 188 D 188
+
Sbjct: 217 N 217
>ref|NP_385937.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC46410.1| (AL591788) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 458
Score = 60.5 bits (145), Expect = 2e-08
Identities = 48/238 (20%), Positives = 99/238 (41%), Gaps = 25/238 (10%)
Query: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY 60
ME NY ++G L + GF+ W+ G G+ E VV G++ SP+ +
Sbjct: 3 METKANYAIVGFFTVLVIAAAFGFVYWMSQYG-RTGQMVELVVNIPGSANGLSVGSPVRF 61
Query: 61 KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALE--QSH 118
GI VG+V + + + + + K + + +G G ++ L +
Sbjct: 62 NGINVGSVRNLAIDANDPRYSIAITEVSADAPVMKSTTATLEVQGLTGAAYIELSGGRKG 121
Query: 119 NEEFYGSG-DKGERI-LIFKEGLMDRLSGDANQVVQEVMKAIRNVNRILDD--------- 167
+E + +KG + ++ + + L A+Q++ AI ++ + D
Sbjct: 122 DENILKTALEKGTQAHILADQSSVTSLLATADQILDRANSAITDIQSFVTDVRGPLTSTI 181
Query: 168 ENVEKFKHILA-----------SVDDLIANLDSRKTQFDSLISNANNLVSNVNNVALD 214
N E+F LA SV+ L ++++ + D +++A+ L+ +V+ +D
Sbjct: 182 GNAERFSKALADNSGAIDQFLKSVEQLSGSVNAASKKLDDTLASADRLIKSVDPKKID 239
>ref|NP_251903.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||H83245 hypothetical protein PA3213 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG06601.1|AE004744_16 (AE004744) hypothetical protein [Pseudomonas aeruginosa]
Length = 312
Score = 54.3 bits (129), Expect = 1e-06
Identities = 38/199 (19%), Positives = 85/199 (42%), Gaps = 2/199 (1%)
Query: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY 60
ME ++ LIG + + + F LWL G +GK+ Y + ++ + G++ S + Y
Sbjct: 1 METRAHHVLIGLFSVIVIGAALLFGLWLAKSG-SEGKFNYYDIVFNEAVSGLSQGSSVQY 59
Query: 61 KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHNE 120
GI+VG+V + V + + +S I++D+ ++ G G + L
Sbjct: 60 SGIKVGDVAFLRLDPKDPRKVWARIRVVASAPIKQDTTAKLALTGITGTSIIQLSSGTPA 119
Query: 121 EFYGSGDKGE-RILIFKEGLMDRLSGDANQVVQEVMKAIRNVNRILDDENVEKFKHILAS 179
G G+ +++ + +L + ++ + + I + +L +EN + L
Sbjct: 120 SPMLEGKDGKIPVIVATPSPLTQLLSNGEDLMGNINQLIARFSNLLSEENTARISRTLDH 179
Query: 180 VDDLIANLDSRKTQFDSLI 198
+D L + + +++
Sbjct: 180 LDQATGALSAERENVSAVM 198
>ref|NP_539880.1| (NC_003317) TOLUENE TOLERANCE PROTEIN TTG2C [Brucella melitensis]
gb|AAL52144.1| (AE009536) TOLUENE TOLERANCE PROTEIN TTG2C [Brucella melitensis]
Length = 331
Score = 52.4 bits (124), Expect = 5e-06
Identities = 43/234 (18%), Positives = 94/234 (39%), Gaps = 14/234 (5%)
Query: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY 60
ME NY L+G L + GF+ W+ G + V + G+ S + +
Sbjct: 1 METKANYVLVGVFTLLVSLLAFGFVYWIARYG-EARDSLPLDVRIQGSVTGLGIGSQVLF 59
Query: 61 KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALE----- 115
GI+VG+V ++ G+V + + ++ I + + + +G G ++ L+
Sbjct: 60 NGIKVGDVRRLHLDDSNPGMVIVQTRVNATTPITRSTTATLGFQGLTGQAYIELKGGRLD 119
Query: 116 ------QSHNEEFYGSGDKGERILIFKEGLMDRLSGDANQVVQEVMKAIRNVNRILDD-- 167
++ E+ D + ++ AN V+ ++ +++ L D
Sbjct: 120 EPNLLTEAAKEDTVARIDADPSAVNNLLATAQDIAARANNVLSQLEGFVKDARGPLTDTI 179
Query: 168 ENVEKFKHILASVDDLIANLDSRKTQFDSLISNANNLVSNVNNVALDVDKRLKQ 221
N + F LA D+I L ++ +A ++++ +N ++ V+ L +
Sbjct: 180 NNTKTFTQALADNADIIQELGQNAGNIRQIVVDAKDMMARLNAASVKVESILNK 233
>ref|NP_102526.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB48312.1| (AP002995) hypothetical protein [Mesorhizobium loti]
Length = 457
Score = 52.0 bits (123), Expect = 7e-06
Identities = 55/276 (19%), Positives = 95/276 (33%), Gaps = 65/276 (23%)
Query: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLDDGKYYEYVVYTDKDLGGIATNSPINY 60
ME NY ++G + ++ GF+ W +G D G+ V G+ S + +
Sbjct: 1 METRANYVIVGIFTLVAILAAFGFVYWTAAIG-DRGETTLLRVRIPGSASGLGRGSFVLF 59
Query: 61 KGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHNE 120
G++VG+V +V D V D I I K ++ + G G + L+ + +
Sbjct: 60 NGVKVGDVKRVYIDVDNPTVAIADTEIDRLTPITKSTQADIGLAGLTGQANIELKGADPK 119
Query: 121 EF-----------------------------YGSGDKGERILIFKEGLMDRLSGDANQVV 151
E + +++L EG + G Q V
Sbjct: 120 EVKLLDQAEKEGKVAEIVANPSAVTNLLQTAQNIFSRADKVLSELEGFTRDVRGPLTQTV 179
Query: 152 QEVMK-----------------------------------AIRNVNRILDDENVEKFKHI 176
Q V ++ +L+ + +K K I
Sbjct: 180 QNVQTFSDALAKNSDGIDKFLSSVSALSEELKGVSGKLDGTLKAAEGLLNAVDRDKIKSI 239
Query: 177 LASVDDLIANLDSRKTQFDSLISNANNLVSNVNNVA 212
+A+VD + ANL Q D +I N + V +VN+ A
Sbjct: 240 VANVDTVTANLKQTSQQLDGVIKNVDTAVGSVNDFA 275
>ref|NP_221079.1| (NC_000963) unknown [Rickettsia prowazekii]
pir||C71632 hypothetical protein RP724 - Rickettsia prowazekii
emb|CAA15155.1| (AJ235273) unknown [Rickettsia prowazekii]
Length = 149
Score = 47.8 bits (112), Expect = 1e-04
Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLGLD--DGKYYEYVVYTDKDLGGIATNSPI 58
M++++ T+IG FL L+ + F+++ G + Y+ V+ ++ GIA S +
Sbjct: 1 MQQNIVETIIG---FLVLIIGLLFLIFAYKTGTSIITSRGYQ-VIANFQNAEGIAVGSDV 56
Query: 59 NYKGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSH 118
GI+VG+V ++ D+ + L I VKI KDSK V + G +G K++A+ +
Sbjct: 57 MISGIKVGSVTQITLDPDRF-YASVYLNINDDVKIPKDSKAQVVTSGLLGGKYIAIIPGN 115
Query: 119 NEE 121
+E
Sbjct: 116 GDE 118
>ref|NP_274958.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
ref|NP_283308.1| (NC_003116) putative outer membrane transport protein [Neisseria
meningitidis Z2491]
pir||E81022 probable outer membrane transport protein NMA0487 [imported] -
Neisseria meningitidis (group B strain MD58, group A
strain Z2491)
gb|AAF42293.1| (AE002544) conserved hypothetical protein [Neisseria meningitidis
MC58]
emb|CAB83780.1| (AL162753) putative outer membrane transport protein [Neisseria
meningitidis Z2491]
Length = 164
Score = 47.4 bits (111), Expect = 2e-04
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 12 GLFFLCLVCMVGFILWLGHLGLD-DGKYYEYVVYTD-KDLGGIATNSPINYKGIQVGNVI 69
GLF L V F+ + G G Y VY D D+GG+ N+P+ G+ VG V
Sbjct: 11 GLFVLIGAAAVAFLAFRVAGGAAFGGSDKTYAVYADFGDIGGLKVNAPVKSAGVLVGRVG 70
Query: 70 KVGF-AKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHNEEFYGSGD 127
+G K VRLDL + D + + G +G +++ L+Q + E +GD
Sbjct: 71 AIGLDPKSYQARVRLDL--DGKYQFSSDVSAQILTSGLLGEQYIGLQQGGDTENLAAGD 127
>ref|NP_360743.1| (NC_003103) ABC transporter substrate binding protein [Rickettsia
conorii]
gb|AAL03644.1| (AE008661) ABC transporter substrate binding protein [Rickettsia
conorii]
Length = 149
Score = 43.9 bits (102), Expect = 0.002
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 1 MERHVNYTLIGGLFFLCLVCMVGFILWLGHLG--LDDGKYYEYVVYTDKDLGGIATNSPI 58
M++++ T+IG F+ L+ + F+++ G + K Y+ + + GIA S +
Sbjct: 1 MQQNIIETIIG---FVVLIIALLFLIFAYKTGSSITSSKGYQVTAHF-QSAEGIAVGSDV 56
Query: 59 NYKGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSH 118
GI++G+V ++ + + L I VKI KDSK V + G +G K++++ +
Sbjct: 57 MISGIKIGSVKQITLDPNSFDA-SVYLNINDDVKIPKDSKAQVVTSGLLGGKYISIVPGN 115
Query: 119 NEE 121
++E
Sbjct: 116 DDE 118
>ref|NP_218014.1| (NC_000962) hypothetical protein Rv3497c [Mycobacterium
tuberculosis H37Rv]
ref|NP_338146.1| (NC_002755) virulence factor mce family protein [Mycobacterium
tuberculosis CDC1551]
pir||C70805 hypothetical protein Rv3497c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA17734.1| (AL022022) hypothetical protein Rv3497c [Mycobacterium tuberculosis
H37Rv]
gb|AAK47960.1| (AE007162) virulence factor mce family protein [Mycobacterium
tuberculosis CDC1551]
Length = 357
Score = 42.0 bits (97), Expect = 0.007
Identities = 65/273 (23%), Positives = 116/273 (41%), Gaps = 35/273 (12%)
Query: 3 RHVNYTLIGGLFFLCLVCMVGFILWLGHLGLD---DGKYYEYVVYTDKDLGGIATNSPIN 59
+H L G+F L LV V I + G+ GL GK Y+ +TD GGI + +
Sbjct: 9 KHERDPLRTGIFGLVLVICVVLIAF-GYSGLPFWPQGKTYD-AYFTDA--GGITPGNSVY 64
Query: 60 YKGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSRGFMGLKFLALEQSHN 119
G++VG V V A + ++ + S+ + S A+ + +G + +A+ +
Sbjct: 65 VSGLKVGAVSAVSLAGNS---AKVTFSVDRSIVVGDQSLAAIRTDTILGERSIAVSPA-- 119
Query: 120 EEFYGSGDKGERILIFK-------EGLMDRLSGDANQVVQEVMKAIRNVNRILDDENVEK 172
GSG K I + + G++ L +AN + + + NV + +
Sbjct: 120 ----GSG-KSTTIPLSRTTTPYTLNGVLQDLGRNANDLNRPQFEQALNVFTQALHDATPQ 174
Query: 173 FKHILASVDDLIANLDSRKTQFDSLISNANNLVSNVNNVALDVDKRLKQGQYDF------ 226
+ + + L L+ R L+++A ++ S ++ A V+K ++ G F
Sbjct: 175 VRGAVDGLTSLSRALNRRDEALQGLLAHAKSVTSVLSERAEQVNKLVEDGNQLFAALDAR 234
Query: 227 KAMFTPLI-----MQAQLSLRNIDNFVEKGSAL 254
+A + LI + AQ+S DN E G AL
Sbjct: 235 RAALSALISGIDDVAAQISGFVADNRKEFGPAL 267
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.141 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,768,993
Number of Sequences: 1026957
Number of extensions: 6376940
Number of successful extensions: 24802
Number of sequences better than 1.0e-02: 18
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 24769
Number of HSP's gapped (non-prelim): 29
length of query: 271
length of database: 324,149,939
effective HSP length: 119
effective length of query: 152
effective length of database: 201,942,056
effective search space: 30695192512
effective search space used: 30695192512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 96 (41.6 bits)