BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646076|ref|NP_208258.1| hypothetical protein
[Helicobacter pylori 26695]
(231 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208258.1| (NC_000915) hypothetical protein [Helicoba... 472 e-132
ref|NP_224078.1| (NC_000921) putative Outer membrane protei... 447 e-125
ref|NP_223089.1| (NC_000921) putative [Helicobacter pylori ... 77 2e-13
ref|NP_207846.1| (NC_000915) hypothetical protein [Helicoba... 74 2e-12
ref|NP_207847.1| (NC_000915) hypothetical protein [Helicoba... 56 3e-07
ref|NP_223088.1| (NC_000921) putative [Helicobacter pylori ... 54 1e-06
ref|NP_223273.1| (NC_000921) putative [Helicobacter pylori ... 45 8e-04
ref|NP_207403.1| (NC_000915) hypothetical protein [Helicoba... 44 0.002
>ref|NP_208258.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64703 hypothetical protein HP1467 - Helicobacter pylori (strain 26695)
gb|AAD08526.1| (AE000647) H. pylori predicted coding region HP1467 [Helicobacter
pylori 26695]
Length = 231
Score = 472 bits (1215), Expect = e-132
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MFKKIIFFGVFLMGGFVIPPLDAMPILHNKTPKKNYQEAHEKLYRSIINRQKLTRKKSGW 60
MFKKIIFFGVFLMGGFVIPPLDAMPILHNKTPKKNYQEAHEKLYRSIINRQKLTRKKSGW
Sbjct: 1 MFKKIIFFGVFLMGGFVIPPLDAMPILHNKTPKKNYQEAHEKLYRSIINRQKLTRKKSGW 60
Query: 61 YFLGGFGAVEATKDYQGQEMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQS 120
YFLGGFGAVEATKDYQGQEMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQS
Sbjct: 61 YFLGGFGAVEATKDYQGQEMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQS 120
Query: 121 HKDPTNSFFTMLAVGLDVIMEFPLGSYKHYLGAFGGARGALVVYTDKQNFKFFKHSVVSG 180
HKDPTNSFFTMLAVGLDVIMEFPLGSYKHYLGAFGGARGALVVYTDKQNFKFFKHSVVSG
Sbjct: 121 HKDPTNSFFTMLAVGLDVIMEFPLGSYKHYLGAFGGARGALVVYTDKQNFKFFKHSVVSG 180
Query: 181 GLAINGGVMLTLFLRHRIELGFKILPTARLLSSSKRFETSPLFYAAYSYKF 231
GLAINGGVMLTLFLRHRIELGFKILPTARLLSSSKRFETSPLFYAAYSYKF
Sbjct: 181 GLAINGGVMLTLFLRHRIELGFKILPTARLLSSSKRFETSPLFYAAYSYKF 231
>ref|NP_224078.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||C71816 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06941.1| (AE001559) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 231
Score = 447 bits (1151), Expect = e-125
Identities = 220/231 (95%), Positives = 225/231 (97%)
Query: 1 MFKKIIFFGVFLMGGFVIPPLDAMPILHNKTPKKNYQEAHEKLYRSIINRQKLTRKKSGW 60
MFKKIIF VFL+GGFVIPPL+AMPIL NKTPKKNYQEAHEKLYRSIINRQKLTRKKSGW
Sbjct: 1 MFKKIIFLCVFLIGGFVIPPLEAMPILRNKTPKKNYQEAHEKLYRSIINRQKLTRKKSGW 60
Query: 61 YFLGGFGAVEATKDYQGQEMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQS 120
YFLGG GAVEA KDYQG+EMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQS
Sbjct: 61 YFLGGVGAVEAIKDYQGKEMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQS 120
Query: 121 HKDPTNSFFTMLAVGLDVIMEFPLGSYKHYLGAFGGARGALVVYTDKQNFKFFKHSVVSG 180
+KDPTNSFFTMLAVGLDVIMEFPLGSYKHYLGAFGGARGALVVYTDKQNFKFFKHSVVSG
Sbjct: 121 YKDPTNSFFTMLAVGLDVIMEFPLGSYKHYLGAFGGARGALVVYTDKQNFKFFKHSVVSG 180
Query: 181 GLAINGGVMLTLFLRHRIELGFKILPTARLLSSSKRFETSPLFYAAYSYKF 231
GLAI+GGVMLTLFLRHRIELGFKILPTARLLSSS RFETSPLFYAAYSYKF
Sbjct: 181 GLAISGGVMLTLFLRHRIELGFKILPTARLLSSSSRFETSPLFYAAYSYKF 231
>ref|NP_223089.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71939 hypothetical protein jhp0370 - Helicobacter pylori (strain J99)
gb|AAD05955.1| (AE001472) putative [Helicobacter pylori J99]
Length = 313
Score = 77.0 bits (188), Expect = 2e-13
Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 33/205 (16%)
Query: 33 KKNYQEAHEKLYRSIINRQKLTRKKSGWYFLGGFGAVEATKDYQGQEMKDW--------- 83
++ Y + K + ++ + KSG + GG+ E YQG+ + +
Sbjct: 63 ERTYPKISSKKRKKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPSAFK 122
Query: 84 --------IATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPTNSFFTML-AV 134
++ +++K G Q +F Y G R LG G + + K P SFF +L A+
Sbjct: 123 NNININAPVSMISVKFGYQKYFVPYFGTRFYGDLLLGGGALKENALKQPVGSFFYVLGAM 182
Query: 135 GLDVIMEFPLG--SYKHYLGAFGGARGALVVYTDKQNFK-------------FFKHSVVS 179
D++ + PL + KH+LG + G L++Y DK N F S++
Sbjct: 183 NTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDKPNQNGRNLIVGGYSSPNFLWKSLIE 242
Query: 180 GGLAINGGVMLTLFLRHRIELGFKI 204
N GV LTL+ +HR+E+G K+
Sbjct: 243 VDYTFNVGVSLTLYRKHRLEIGTKL 267
>ref|NP_207846.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64651 hypothetical protein HP1055 - Helicobacter pylori (strain 26695)
gb|AAD08107.1| (AE000613) H. pylori predicted coding region HP1055 [Helicobacter
pylori 26695]
Length = 314
Score = 73.6 bits (179), Expect = 2e-12
Identities = 53/204 (25%), Positives = 88/204 (42%), Gaps = 33/204 (16%)
Query: 34 KNYQEAHEKLYRSIINRQKLTRKKSGWYFLGGFGAVEATKDYQGQEMKDW---------- 83
++Y + K ++ + KSG + GG+ E YQG+ + +
Sbjct: 65 RSYPKISSKKKEKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPSAFKN 124
Query: 84 -------IATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPTNSFFTML-AVG 135
++ ++ K G Q +F Y G R LG G + + K P SF +L AV
Sbjct: 125 NININAPVSMISAKFGYQKYFVSYFGTRFYGDLLLGGGALKEDAIKQPVGSFIYVLGAVN 184
Query: 136 LDVIMEFPLG--SYKHYLGAFGGARGALVVYTDKQNFK-------------FFKHSVVSG 180
D++ + PL + KH+LG + G L++Y D+ N F S++
Sbjct: 185 TDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDRPNQNGRNLVVGGYSSPNFLWKSLIEV 244
Query: 181 GLAINGGVMLTLFLRHRIELGFKI 204
N GV LTL+ +HR+E+G K+
Sbjct: 245 DYTFNVGVSLTLYRKHRLEIGTKL 268
>ref|NP_207847.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64651 hypothetical protein HP1056 - Helicobacter pylori (strain 26695)
gb|AAD08108.1| (AE000613) H. pylori predicted coding region HP1056 [Helicobacter
pylori 26695]
Length = 284
Score = 56.2 bits (134), Expect = 3e-07
Identities = 57/202 (28%), Positives = 99/202 (48%), Gaps = 18/202 (8%)
Query: 38 EAHEKLYRSIINRQKLTRKKSGWYF---LGGFGAVEATKDYQGQEMKDWIATLNLKTGVQ 94
E HEK + Q++ + KSG++ LG G + Y+ E+ I L G++
Sbjct: 89 ELHEKNESLLF--QRMAKNKSGFFIGVILGDIGV--SAHSYEKFELLSNIQASPLLYGLR 144
Query: 95 SFFKKYI--GIRGV--FAWDLGSGKVNYQSHKDPTNSFFTMLAVGLDVIMEFPLGSYKHY 150
S ++KY GI + + LG ++S D S+ T ++ +D++M+ P+ K +
Sbjct: 145 SGYQKYFANGISALRFYGEYLGGAMKGFKS--DSLASYQTA-SLNIDLLMDKPIDKEKRF 201
Query: 151 -LGAFGGAR-GALVVYTDKQNFKFFKHSVVSGGLAINGGVMLTLFLRHRIELGFKILPTA 208
LG FGG G +Y + + K + G L +N GV +TL L+HR EL K+ P
Sbjct: 202 ALGIFGGVGVGWNGMYQNLKEVKGYSQPNAFG-LVLNLGVSMTLNLKHRFELALKMPPLK 260
Query: 209 RLLSS-SKRFETSPLFYAAYSY 229
+ F+++ ++Y +Y+Y
Sbjct: 261 ETSQTFLYYFKSTNIYYISYNY 282
>ref|NP_223088.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71939 hypothetical protein jhp0369 - Helicobacter pylori (strain J99)
gb|AAD05956.1| (AE001472) putative [Helicobacter pylori J99]
Length = 289
Score = 54.3 bits (129), Expect = 1e-06
Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 18/202 (8%)
Query: 38 EAHEKLYRSIINRQKLTRKKSGWYF---LGGFGAVEATKDYQGQEMKDWIATLNLKTGVQ 94
E HEK I Q++ + KSG++ LG G Y+ E+ I L G++
Sbjct: 94 ELHEK--NESILFQQMAKNKSGFFIGVILGDIGI--NANPYEKFELLSNIQASPLLYGLR 149
Query: 95 SFFKKYI--GIRGV--FAWDLGSGKVNYQSHKDPTNSFFTMLAVGLDVIMEFPLGSYKHY 150
S ++KY GI + + LG ++S D S+ T ++ +D++M+ P+ K +
Sbjct: 150 SGYQKYFANGISALRFYGEYLGGAMKGFKS--DSLASYQTA-SLNIDLLMDKPIDKEKRF 206
Query: 151 -LGAFGGAR-GALVVYTDKQNFKFFKHSVVSGGLAINGGVMLTLFLRHRIELGFKILPTA 208
LG FGG G +Y + + + + G L +N GV +TL L+HR EL K+ P
Sbjct: 207 ALGIFGGVGVGWNGMYQNLKEIRGYSQPNAFG-LVLNLGVSMTLNLKHRFELALKMPPLK 265
Query: 209 RLLSS-SKRFETSPLFYAAYSY 229
+ F+++ ++Y +Y+Y
Sbjct: 266 ETSQTFLYYFKSTNIYYISYNY 287
>ref|NP_223273.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71919 hypothetical protein jhp0555 - Helicobacter pylori (strain J99)
gb|AAD06127.1| (AE001487) putative [Helicobacter pylori J99]
Length = 189
Score = 44.7 bits (104), Expect = 8e-04
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 90 KTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPTNSFFTMLAVGLDVIMEFPLGSYKH 149
K G Q F K + +RG F++ + + ++L++ +DV+ +F +YK
Sbjct: 56 KGGYQFAFFKALALRGEFSYLMAIKPTALHTINT------SLLSLNMDVLSDFY--TYKK 107
Query: 150 YLGAFGGARGALVVYTDKQNFKFFKHSVVSG--GLAINGGVMLTLFLRHRIELGFKILPT 207
Y +FG G + Y + N K+S G GL N G+ T+ HR+ELG KI P
Sbjct: 108 Y--SFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGL-FNVGLGSTIDRHHRVELGAKI-PF 163
Query: 208 ARLLSSSKR--FETSPLFYAAYSYKF 231
++ +S K F S +AAYSY F
Sbjct: 164 SKTRNSFKNSYFLESVFIHAAYSYMF 189
>ref|NP_207403.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64595 hypothetical protein HP0608 - Helicobacter pylori (strain 26695)
gb|AAD07674.1| (AE000574) H. pylori predicted coding region HP0608 [Helicobacter
pylori 26695]
Length = 160
Score = 43.5 bits (101), Expect = 0.002
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 90 KTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPTNSFFTMLAVGLDVIMEFPLGSYKH 149
K G Q F K + +RG F++ + + ++L++ +DV+ +F +YK
Sbjct: 27 KGGYQFAFFKALALRGEFSYLMAIKPTALHTINT------SLLSLNIDVLSDFY--TYKK 78
Query: 150 YLGAFGGARGALVVYTDKQNFKFFKHSVVSG--GLAINGGVMLTLFLRHRIELGFKILPT 207
Y +FG G + Y + N K+S G GL N G+ T+ HRIELG KI P
Sbjct: 79 Y--SFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGL-FNVGLGSTIDRHHRIELGAKI-PF 134
Query: 208 ARLLSSSKR--FETSPLFYAAYSYKF 231
++ +S K F S +A YSY F
Sbjct: 135 SKTRNSFKNPYFLESVFIHATYSYMF 160
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.325 0.143 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,309,165
Number of Sequences: 1026957
Number of extensions: 6292431
Number of successful extensions: 15828
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 15821
Number of HSP's gapped (non-prelim): 8
length of query: 231
length of database: 324,149,939
effective HSP length: 117
effective length of query: 114
effective length of database: 203,995,970
effective search space: 23255540580
effective search space used: 23255540580
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 95 (41.2 bits)