BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644778|ref|NP_206948.1| hypothetical protein
[Helicobacter pylori 26695]
(194 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206948.1| (NC_000915) hypothetical protein [Helicoba... 388 e-107
ref|NP_222858.1| (NC_000921) putative [Helicobacter pylori ... 339 1e-92
>ref|NP_206948.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64538 hypothetical protein HP0149 - Helicobacter pylori (strain 26695)
gb|AAD07223.1| (AE000536) H. pylori predicted coding region HP0149 [Helicobacter
pylori 26695]
Length = 194
Score = 388 bits (996), Expect = e-107
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MRILWLVIAFVCCLGADDYVFNNFKGRLVEKSVAFVEGVSKELYLKTGVRFVIDMTDFEK 60
MRILWLVIAFVCCLGADDYVFNNFKGRLVEKSVAFVEGVSKELYLKTGVRFVIDMTDFEK
Sbjct: 1 MRILWLVIAFVCCLGADDYVFNNFKGRLVEKSVAFVEGVSKELYLKTGVRFVIDMTDFEK 60
Query: 61 NPIALATKKERQNYQEGFLKQLKPPFVVFFFYHDAQKIELVANPKDLLDTDKIFFEKIAP 120
NPIALATKKERQNYQEGFLKQLKPPFVVFFFYHDAQKIELVANPKDLLDTDKIFFEKIAP
Sbjct: 61 NPIALATKKERQNYQEGFLKQLKPPFVVFFFYHDAQKIELVANPKDLLDTDKIFFEKIAP 120
Query: 121 LLPTNPKEYTPQRISAMLINGYSVAVDALAQKYRVNITQNFNAPKGVTFVKVVIYILLLT 180
LLPTNPKEYTPQRISAMLINGYSVAVDALAQKYRVNITQNFNAPKGVTFVKVVIYILLLT
Sbjct: 121 LLPTNPKEYTPQRISAMLINGYSVAVDALAQKYRVNITQNFNAPKGVTFVKVVIYILLLT 180
Query: 181 LLGAFLGLYFFKKS 194
LLGAFLGLYFFKKS
Sbjct: 181 LLGAFLGLYFFKKS 194
>ref|NP_222858.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71970 hypothetical protein jhp0137 - Helicobacter pylori (strain J99)
gb|AAD05716.1| (AE001452) putative [Helicobacter pylori J99]
Length = 197
Score = 339 bits (869), Expect = 1e-92
Identities = 176/197 (89%), Positives = 184/197 (93%), Gaps = 3/197 (1%)
Query: 1 MRILWLVIA--FVCCLGADD-YVFNNFKGRLVEKSVAFVEGVSKELYLKTGVRFVIDMTD 57
M+ LWLVI+ FV L A++ YVFNN KGRL EKSVAF+EGVSKELYLKTGVRF IDMTD
Sbjct: 1 MKGLWLVISLVFVGFLWANESYVFNNSKGRLTEKSVAFIEGVSKELYLKTGVRFAIDMTD 60
Query: 58 FEKNPIALATKKERQNYQEGFLKQLKPPFVVFFFYHDAQKIELVANPKDLLDTDKIFFEK 117
FEKNPIALA KKERQ+YQEGFLKQLKPPFVVFFFYHDAQKIELVANPKDLLDTDKIFFEK
Sbjct: 61 FEKNPIALANKKERQSYQEGFLKQLKPPFVVFFFYHDAQKIELVANPKDLLDTDKIFFEK 120
Query: 118 IAPLLPTNPKEYTPQRISAMLINGYSVAVDALAQKYRVNITQNFNAPKGVTFVKVVIYIL 177
IAPLLPTN KEYTPQRISAMLINGYSVAVDALA+KY VNITQNF+APKGVTFVKVVIYIL
Sbjct: 121 IAPLLPTNAKEYTPQRISAMLINGYSVAVDALAEKYHVNITQNFSAPKGVTFVKVVIYIL 180
Query: 178 LLTLLGAFLGLYFFKKS 194
LLTLLGAFLGLYFFKKS
Sbjct: 181 LLTLLGAFLGLYFFKKS 197
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.327 0.144 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,293,455
Number of Sequences: 1026957
Number of extensions: 4779582
Number of successful extensions: 14153
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14151
Number of HSP's gapped (non-prelim): 2
length of query: 194
length of database: 324,149,939
effective HSP length: 115
effective length of query: 79
effective length of database: 206,049,884
effective search space: 16277940836
effective search space used: 16277940836
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 94 (40.8 bits)