BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646082|ref|NP_208264.1| hypothetical protein
[Helicobacter pylori 26695]
         (191 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208264.1|  (NC_000915) hypothetical protein [Helicoba...   381  e-105
ref|NP_224084.1|  (NC_000921) putative [Helicobacter pylori ...   372  e-102
ref|NP_282178.1|  (NC_002163) possible purine/pyrimidine pho...   111  4e-24
ref|NP_466035.1|  (NC_003210) similar to late competence pro...    42  0.004
ref|NP_563089.1|  (NC_003366) comFC protein [Clostridium per...    42  0.005

>ref|NP_208264.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64704 hypothetical protein HP1473 - Helicobacter pylori (strain 26695)
 gb|AAD08528.1| (AE000647) H. pylori predicted coding region HP1473 [Helicobacter
           pylori 26695]
          Length = 191

 Score =  381 bits (978), Expect = e-105
 Identities = 191/191 (100%), Positives = 191/191 (100%)

Query: 1   MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRI 60
           MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRI
Sbjct: 1   MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRI 60

Query: 61  LPLLSQKAGAEFVKILQEQGLNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRL 120
           LPLLSQKAGAEFVKILQEQGLNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRL
Sbjct: 61  LPLLSQKAGAEFVKILQEQGLNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRL 120

Query: 121 RANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDIITTGTTLKEALKYLKTLNIKV 180
           RANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDIITTGTTLKEALKYLKTLNIKV
Sbjct: 121 RANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDIITTGTTLKEALKYLKTLNIKV 180

Query: 181 HFAIALCSADE 191
           HFAIALCSADE
Sbjct: 181 HFAIALCSADE 191



>ref|NP_224084.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71814 hypothetical protein jhp1366 - Helicobacter pylori (strain J99)
 gb|AAD06955.1| (AE001560) putative [Helicobacter pylori J99]
          Length = 191

 Score =  372 bits (955), Expect = e-102
 Identities = 186/191 (97%), Positives = 188/191 (98%)

Query: 1   MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRI 60
           MRCLTCLKLSFKPLCPNCLNDLPLSLK+RVLEGVSVYSFYAYSEIEELIKSKYALIGSRI
Sbjct: 1   MRCLTCLKLSFKPLCPNCLNDLPLSLKLRVLEGVSVYSFYAYSEIEELIKSKYALIGSRI 60

Query: 61  LPLLSQKAGAEFVKILQEQGLNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRL 120
           LPLLSQKAGAEFVKILQEQGLN PLYGIAIDDKIKSFYSHSAALLKGFCQGNLK TYGRL
Sbjct: 61  LPLLSQKAGAEFVKILQEQGLNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRL 120

Query: 121 RANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDIITTGTTLKEALKYLKTLNIKV 180
           RANNAVSYAGKSLEFRANNPRNFTF+GDESLDYFLLDDIITTGTTLKEALKYLKTLNIK 
Sbjct: 121 RANNAVSYAGKSLEFRANNPRNFTFRGDESLDYFLLDDIITTGTTLKEALKYLKTLNIKA 180

Query: 181 HFAIALCSADE 191
           HFAIALCSADE
Sbjct: 181 HFAIALCSADE 191



>ref|NP_282178.1| (NC_002163) possible purine/pyrimidine phosphoribosyltransferase
           [Campylobacter jejuni]
 pir||A81305 probable purine/pyrimidine phosphoribosyltransferase Cj1028c
           [imported] - Campylobacter jejuni (strain NCTC 11168)
 emb|CAB73284.1| (AL139077) possible purine/pyrimidine phosphoribosyltransferase
           [Campylobacter jejuni]
          Length = 191

 Score =  111 bits (278), Expect = 4e-24
 Identities = 72/192 (37%), Positives = 105/192 (54%), Gaps = 6/192 (3%)

Query: 1   MRCLTCLKLSFKPLCPNCLNDLP-LSLKVRVLEG-VSVYSFYAYSEIEELIKSKYALIGS 58
           MRC+ C   +    C  C  +L   SL VR L+    VYSFY Y EI+ L+ SK+   G 
Sbjct: 1   MRCINCGAFALLCFCELCELELSEFSLNVRKLDNNFKVYSFYKYHEIQHLLHSKHYFYGY 60

Query: 59  RILPLLSQKAGAEFVKILQEQGLNIPLYGIAIDDKIKSF-YSHSAALLKGFCQGNLKPTY 117
            +  +L++ + A+F      +   + +  IA+DDK++   YSHSA L +      +KP +
Sbjct: 61  FVYKMLAKLSFAKFKDFFDPR---MTINVIALDDKVEDMLYSHSAILARYLKTKFVKPVF 117

Query: 118 GRLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDIITTGTTLKEALKYLKTLN 177
             L+A N+V Y+GKSLEFR  + RN+           L+DDI+TTG++L EA K L+   
Sbjct: 118 NVLKAQNSVKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIVTTGSSLLEAKKVLEENK 177

Query: 178 IKVHFAIALCSA 189
           I V FA+ L  A
Sbjct: 178 ISVLFALVLADA 189



>ref|NP_466035.1| (NC_003210) similar to late competence protein comFC [Listeria
           monocytogenes EGD-e]
 emb|CAD00590.1| (AL591983) similar to late competence protein comFC [Listeria
           monocytogenes]
          Length = 218

 Score = 42.0 bits (97), Expect = 0.004
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 20/180 (11%)

Query: 3   CLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILP 62
           C  C K S   +C +C +      +   L+  S  S Y Y++  +    K+   G   + 
Sbjct: 45  CKNCSKESLDDVCEDCQS------RTHFLD--SNKSIYRYNDFAKEYMKKFKFQGDYEIG 96

Query: 63  LLSQKAGAEFVKILQEQGLNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRA 122
            + +K  + F+   +E+ + IP   ++   K++  ++ + A+LK   Q  +   Y  L A
Sbjct: 97  AIFKKELSTFLSEKKEKIVPIP---VSETRKLERGFNQTTAILK---QSGI--LYEELLA 148

Query: 123 N-NAVSYAGKSLEFRANNPRNFTFKGDE---SLDYFLLDDIITTGTTLKEALKYLKTLNI 178
             +    + K+   R  + + F F G E   S +  L DDI TTG+TL  A + LK   +
Sbjct: 149 KKHTEKQSKKTKRERLASEQAFYFSGKEILKSTEVILFDDIYTTGSTLNLAAQILKEAGV 208



>ref|NP_563089.1| (NC_003366) comFC protein [Clostridium perfringens]
 dbj|BAB81879.1| (AP003193) comFC protein [Clostridium perfringens]
          Length = 219

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 45/193 (23%), Positives = 83/193 (42%), Gaps = 22/193 (11%)

Query: 2   RCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVS--VYSFYAYSEIEELIKSKYA---LI 56
           +C  C     K +C  C   +  + +  ++E     + S+Y++   + +++ KY      
Sbjct: 25  KCYVCNTEGEKIICDKCKGKIQKAKETLIIEECEMLICSYYSFIVKDLILRLKYKGDFHA 84

Query: 57  GSRILPLLSQKAGAEFVKILQEQGLNIPLYG---IAIDDKIKSFYSHSAALLKGFCQG-N 112
           G  ++ LL +K        ++E  L++       +A D   K  ++    L K   +   
Sbjct: 85  GEILVMLLEEK--------IKESNLDVDFITYVPVAKDSIRKKEFNQCEYLSKELGKRLG 136

Query: 113 LKPTYGRLRANNAVSYAGKSLEFRANNPRNF----TFKGDESLDYFLLDDIITTGTTLKE 168
           +K      + NN       S E R  N +N      +K  E     LLDD++TTG+TLK 
Sbjct: 137 IKSIETLKKKNNVKEQKSLSKEEREKNVQNAFKLKRYKNLEGKSIILLDDVMTTGSTLKA 196

Query: 169 ALKYLKTL-NIKV 180
            ++ LK + +IK+
Sbjct: 197 CVRELKKIKDIKI 209



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.322    0.140    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,554,914
Number of Sequences: 1026957
Number of extensions: 4519560
Number of successful extensions: 10590
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10586
Number of HSP's gapped (non-prelim): 5
length of query: 191
length of database: 324,149,939
effective HSP length: 114
effective length of query: 77
effective length of database: 207,076,841
effective search space: 15944916757
effective search space used: 15944916757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 94 (40.8 bits)