BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646086|ref|NP_208268.1| hypothetical protein
[Helicobacter pylori 26695]
         (218 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208268.1|  (NC_000915) hypothetical protein [Helicoba...   411  e-114
ref|NP_224088.1|  (NC_000921) putative [Helicobacter pylori ...   380  e-105
ref|NP_281930.1|  (NC_002163) putative periplasmic protein [...    69  5e-11
ref|NP_213566.1|  (NC_000918) flagellar protein FlgA [Aquife...    57  1e-07
ref|NP_229341.1|  (NC_000853) flagellar protein FlgA, putati...    42  0.006

>ref|NP_208268.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64704 distal basal body ring component protein - Helicobacter pylori
           (strain 26695)
 gb|AAD08529.1| (AE000647) H. pylori predicted coding region HP1477 [Helicobacter
           pylori 26695]
          Length = 218

 Score =  411 bits (1056), Expect = e-114
 Identities = 218/218 (100%), Positives = 218/218 (100%)

Query: 1   MKILILFFICLNALFALDSNALKAEIKEVYLKEYKDLKLEIETINLEIPERFSNASILSY 60
           MKILILFFICLNALFALDSNALKAEIKEVYLKEYKDLKLEIETINLEIPERFSNASILSY
Sbjct: 1   MKILILFFICLNALFALDSNALKAEIKEVYLKEYKDLKLEIETINLEIPERFSNASILSY 60

Query: 61  ELNASNKLKKDGVVFLRLENDPNLRLPVRYSVIGSMQAFKSVSAIKKDENITANNTQKER 120
           ELNASNKLKKDGVVFLRLENDPNLRLPVRYSVIGSMQAFKSVSAIKKDENITANNTQKER
Sbjct: 61  ELNASNKLKKDGVVFLRLENDPNLRLPVRYSVIGSMQAFKSVSAIKKDENITANNTQKER 120

Query: 121 ILFGALSNPLLEGAIDKVSAKNFIPPNTLLSTDKTQALIIVRKNDIITGVYEEGQISIEI 180
           ILFGALSNPLLEGAIDKVSAKNFIPPNTLLSTDKTQALIIVRKNDIITGVYEEGQISIEI
Sbjct: 121 ILFGALSNPLLEGAIDKVSAKNFIPPNTLLSTDKTQALIIVRKNDIITGVYEEGQISIEI 180

Query: 181 SLKALENGALNQIIQAKNLESNKILKAKVLSSSKAQIL 218
           SLKALENGALNQIIQAKNLESNKILKAKVLSSSKAQIL
Sbjct: 181 SLKALENGALNQIIQAKNLESNKILKAKVLSSSKAQIL 218



>ref|NP_224088.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||E71814 hypothetical protein jhp1370 - Helicobacter pylori (strain J99)
 gb|AAD06959.1| (AE001560) putative [Helicobacter pylori J99]
          Length = 218

 Score =  380 bits (977), Expect = e-105
 Identities = 202/218 (92%), Positives = 209/218 (95%)

Query: 1   MKILILFFICLNALFALDSNALKAEIKEVYLKEYKDLKLEIETINLEIPERFSNASILSY 60
           MKIL LF I LNALFALD NALK EIKE YLKEYKDLKLEIETINLEIPERFS+ASILSY
Sbjct: 1   MKILTLFLIGLNALFALDLNALKTEIKETYLKEYKDLKLEIETINLEIPERFSHASILSY 60

Query: 61  ELNASNKLKKDGVVFLRLENDPNLRLPVRYSVIGSMQAFKSVSAIKKDENITANNTQKER 120
           ELNASNKLKKDGVVFLRLEN+PNLRLPVRYSVIGSMQAFKS S IKKDENITANNT+KER
Sbjct: 61  ELNASNKLKKDGVVFLRLENEPNLRLPVRYSVIGSMQAFKSASTIKKDENITANNTKKER 120

Query: 121 ILFGALSNPLLEGAIDKVSAKNFIPPNTLLSTDKTQALIIVRKNDIITGVYEEGQISIEI 180
           +LFGALSNPLLEGAIDKVSAK+FIPP+TLLS DKTQALIIVRKNDIITGVYEEGQISIEI
Sbjct: 121 VLFGALSNPLLEGAIDKVSAKHFIPPDTLLSADKTQALIIVRKNDIITGVYEEGQISIEI 180

Query: 181 SLKALENGALNQIIQAKNLESNKILKAKVLSSSKAQIL 218
           SLKALENGAL+QIIQAKNLESNKILKAKVLSSSKAQIL
Sbjct: 181 SLKALENGALHQIIQAKNLESNKILKAKVLSSSKAQIL 218



>ref|NP_281930.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
 pir||A81348 probable periplasmic protein Cj0769c [imported] - Campylobacter
           jejuni (strain NCTC 11168)
 emb|CAB73034.1| (AL139076) putative periplasmic protein [Campylobacter jejuni]
          Length = 220

 Score = 68.6 bits (166), Expect = 5e-11
 Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 16/223 (7%)

Query: 1   MKILIL-FFICLNALFALDSNALKAEIKEVYLKEYKDL--KLEIETINLEI---PERFSN 54
           MKI+ L FFI +N + A    A   EIK    KE+++   K+ I  I+L+I   P+ F  
Sbjct: 1   MKIIFLTFFIVINYIQA----ASLEEIKTALAKEFRNNFPKIIISQIDLKITSLPKDFDQ 56

Query: 55  ASILSYELNASNKLKKDGVVFLRLENDPNLRLPV--RYSVIGSMQAFKSVSAIKKDENIT 112
              L       N+ +  G +    +   N++  V  RY +  +++  KS  AIK+ + + 
Sbjct: 57  YEFLRIANGRFNQAQ--GFLRAEFKTPQNIQKNVFFRYFIQANLEVLKSERAIKRGDKLG 114

Query: 113 ANNTQKERILFGALS-NPLLEGAIDKVSAKNFIPPNTLLSTDKTQALIIVRKNDIITGVY 171
           A + +   I F  +  N L    +D + AK+ I  N +L  +  +   ++R+ND I GV 
Sbjct: 115 AFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKTTALIRRNDPIIGVL 174

Query: 172 EEGQISIEISLKALENGALNQIIQAKNLESNKILKAKVLSSSK 214
            E  + + I L AL++  + + I+AKN E  K+++  V+  ++
Sbjct: 175 SEANVDVLIELVALQSANMGERIRAKNKE-GKVMQGIVVGKNR 216



>ref|NP_213566.1| (NC_000918) flagellar protein FlgA [Aquifex aeolicus]
 sp|O67005|FLGA_AQUAE Flagella basal body P-ring formation protein flgA precursor
 pir||B70372 flagellar protein FlgA - Aquifex aeolicus
 gb|AAC06962.1| (AE000709) flagellar protein FlgA [Aquifex aeolicus]
          Length = 223

 Score = 57.0 bits (136), Expect = 1e-07
 Identities = 55/221 (24%), Positives = 93/221 (41%), Gaps = 29/221 (13%)

Query: 3   ILILFFICLNALFALDSNALKAEI-KEVYLKEYKDLKLEIETINLEIPERFSNASILSYE 61
           +  LF   L+ L +L  N L+ E  +EV LK YK L          IP+ FS   +  Y+
Sbjct: 26  LFFLFTFSLD-LESLIKNELRKEFGEEVRLKNYKVLT--------GIPDNFSKVELKVYK 76

Query: 62  LNASN----KLKKDGVVFLRLENDPNLRLPVRYSVIGSMQAFKSVSAIKKDENITANNTQ 117
            +       K  K G + L LE    + +  R               I   E +  +N +
Sbjct: 77  NSPRGFLHLKNTKVGTIALELEWKCRVLVAKR--------------DIYPGERLNFSNVE 122

Query: 118 KERILFGALSNPLLEGAIDKVSAKNFIPPNTLLSTDKTQALIIVRKNDIITGVYEEGQIS 177
           +  I          E  ++ V+ K  I   T++     +   +V++ +I+  VYE G + 
Sbjct: 123 EREIYLERCPQNFKENFVNFVALKE-IKKGTIVRRSYLKKEFLVKRGEIVNAVYENGNVV 181

Query: 178 IEISLKALENGALNQIIQAKNLESNKILKAKVLSSSKAQIL 218
           I    KALENG   ++I+  +  S K+++ K++     +IL
Sbjct: 182 IRFRTKALENGYYGEVIRVLSPFSRKVIRGKIIGEGTVKIL 222



>ref|NP_229341.1| (NC_000853) flagellar protein FlgA, putative [Thermotoga maritima]
 pir||A72243 hypothetical protein TM1541 - Thermotoga maritima (strain MSB8)
 gb|AAD36608.1|AE001800_18 (AE001800) flagellar protein FlgA, putative [Thermotoga maritima]
          Length = 286

 Score = 41.6 bits (96), Expect = 0.006
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 11/144 (7%)

Query: 84  LRLPVRYSVIGSMQAFKSVSAIKKDENITANNTQKE-------RILFGALSNPLLEGA-- 134
           LR P  Y  + +M   K  + +    NI   +  KE       R +F     P  + +  
Sbjct: 141 LRFPDTYVTL-NMLLRKERNVVVLKRNINVGDVIKEEDVRLEKRNVFEIYGEPFFDVSEV 199

Query: 135 IDKVSAKNFIPPNTLLSTDKTQALIIVRKNDIITGVYEEGQISIEISLKALENGALNQII 194
           + K+S + ++   T+L+ D  +    V K  ++    + G I +   ++ LENG L + +
Sbjct: 200 VGKIS-RRYLKEGTVLTADMVKDPPDVVKGQVVPAYVDMGSIKVTTFVEVLENGYLGETV 258

Query: 195 QAKNLESNKILKAKVLSSSKAQIL 218
           +A N+ES K +  +V      +IL
Sbjct: 259 RAMNVESRKYVFGRVERGPVLRIL 282



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.315    0.134    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,175,663
Number of Sequences: 1026957
Number of extensions: 4233956
Number of successful extensions: 13882
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13877
Number of HSP's gapped (non-prelim): 5
length of query: 218
length of database: 324,149,939
effective HSP length: 116
effective length of query: 102
effective length of database: 205,022,927
effective search space: 20912338554
effective search space used: 20912338554
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 95 (41.2 bits)