BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646090|ref|NP_208272.1| hypothetical protein
[Helicobacter pylori 26695]
(265 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208272.1| (NC_000915) hypothetical protein [Helicoba... 536 e-152
ref|NP_224092.1| (NC_000921) putative [Helicobacter pylori ... 510 e-144
ref|NP_282206.1| (NC_002163) hypothetical protein Cj1056c [... 148 5e-35
gb|AAL59935.1| (AY072113) putative nitrilase [Arabidopsis t... 51 1e-05
ref|NP_565650.1| (NM_128305) putative nitrilase [Arabidopsi... 51 1e-05
ref|NP_389240.1| (NC_000964) similar to hypothetical protei... 49 6e-05
emb|CAB45873.1| (Y19104) beta-alanine synthase [Lycopersico... 49 6e-05
ref|NP_213067.1| (NC_000918) hypothetical protein [Aquifex ... 47 2e-04
ref|NP_348291.1| (NC_003030) Predicted amidohydrolase [Clos... 46 4e-04
ref|NP_241913.1| (NC_002570) BH1047~unknown conserved prote... 45 6e-04
ref|NP_588519.1| (NC_003421) hypothetical protein [Schizosa... 45 0.001
ref|NP_649732.1| (NM_141475) pyd3 gene product [Drosophila ... 44 0.001
ref|NP_469655.1| (NC_003212) conserved hypothetical protein... 43 0.003
dbj|BAB59126.1| (AB062681) putative hydrolase [Oryza sativa... 43 0.004
ref|NP_463813.1| (NC_003210) conserved hypothetical protein... 42 0.007
>ref|NP_208272.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64705 hypothetical protein HP1481 - Helicobacter pylori (strain 26695)
gb|AAD08531.1| (AE000647) H. pylori predicted coding region HP1481 [Helicobacter
pylori 26695]
Length = 265
Score = 536 bits (1381), Expect = e-152
Identities = 265/265 (100%), Positives = 265/265 (100%)
Query: 1 MRVFALQLESFKENLMQSLFNSIPKKSVIVLPEYVINPFFHHNMGLDVNEISDQSARAVE 60
MRVFALQLESFKENLMQSLFNSIPKKSVIVLPEYVINPFFHHNMGLDVNEISDQSARAVE
Sbjct: 1 MRVFALQLESFKENLMQSLFNSIPKKSVIVLPEYVINPFFHHNMGLDVNEISDQSARAVE 60
Query: 61 FLSQKCEELDLIVSAPVLLEEHSKIYKKIALISKESVKYYTQQRLIPYPHWDEESFFDNE 120
FLSQKCEELDLIVSAPVLLEEHSKIYKKIALISKESVKYYTQQRLIPYPHWDEESFFDNE
Sbjct: 61 FLSQKCEELDLIVSAPVLLEEHSKIYKKIALISKESVKYYTQQRLIPYPHWDEESFFDNE 120
Query: 121 KSAFKELLVFERDGLKFAPLFGFEAHFDEIWVQAKNQGVDVVLLSSVATFESNERWRLLC 180
KSAFKELLVFERDGLKFAPLFGFEAHFDEIWVQAKNQGVDVVLLSSVATFESNERWRLLC
Sbjct: 121 KSAFKELLVFERDGLKFAPLFGFEAHFDEIWVQAKNQGVDVVLLSSVATFESNERWRLLC 180
Query: 181 QMRAFCASCVVVRANRIGAYRQIIVEEDQKNEFLWKFYGDSFVALPNGAIEDSLEGKMGA 240
QMRAFCASCVVVRANRIGAYRQIIVEEDQKNEFLWKFYGDSFVALPNGAIEDSLEGKMGA
Sbjct: 181 QMRAFCASCVVVRANRIGAYRQIIVEEDQKNEFLWKFYGDSFVALPNGAIEDSLEGKMGA 240
Query: 241 LNAQIDKNDIDEWAKLWHFRTIKEG 265
LNAQIDKNDIDEWAKLWHFRTIKEG
Sbjct: 241 LNAQIDKNDIDEWAKLWHFRTIKEG 265
>ref|NP_224092.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71815 hypothetical protein jhp1374 - Helicobacter pylori (strain J99)
gb|AAD06945.1| (AE001560) putative [Helicobacter pylori J99]
Length = 265
Score = 510 bits (1313), Expect = e-144
Identities = 248/265 (93%), Positives = 260/265 (97%)
Query: 1 MRVFALQLESFKENLMQSLFNSIPKKSVIVLPEYVINPFFHHNMGLDVNEISDQSARAVE 60
MRVFALQLESF+E LMQSLFNSIPK+SV+VLPEYVINPFFHHNMGLDVNEI+ QSARA+
Sbjct: 1 MRVFALQLESFEETLMQSLFNSIPKQSVVVLPEYVINPFFHHNMGLDVNEINAQSARAIG 60
Query: 61 FLSQKCEELDLIVSAPVLLEEHSKIYKKIALISKESVKYYTQQRLIPYPHWDEESFFDNE 120
FLSQKCEELDLIVSAPVLLEEHSKIYKKIALISKE+++YYTQQRLIPYPHWDEESFFDNE
Sbjct: 61 FLSQKCEELDLIVSAPVLLEEHSKIYKKIALISKENIQYYTQQRLIPYPHWDEESFFDNE 120
Query: 121 KSAFKELLVFERDGLKFAPLFGFEAHFDEIWVQAKNQGVDVVLLSSVATFESNERWRLLC 180
KSAFKELLVFERDGL+ APLFGFEAHFDEIWVQAKNQGVDVVLLSSVATFESNERWRLLC
Sbjct: 121 KSAFKELLVFERDGLRIAPLFGFEAHFDEIWVQAKNQGVDVVLLSSVATFESNERWRLLC 180
Query: 181 QMRAFCASCVVVRANRIGAYRQIIVEEDQKNEFLWKFYGDSFVALPNGAIEDSLEGKMGA 240
QMRAFCASCVVVRANRIGAYRQI+VE DQKNEFLWKFYGDSFVALPNGAIEDSLEGKMGA
Sbjct: 181 QMRAFCASCVVVRANRIGAYRQILVEGDQKNEFLWKFYGDSFVALPNGAIEDSLEGKMGA 240
Query: 241 LNAQIDKNDIDEWAKLWHFRTIKEG 265
L+AQ+DKNDIDEWAKLWHFRTIKEG
Sbjct: 241 LSAQMDKNDIDEWAKLWHFRTIKEG 265
>ref|NP_282206.1| (NC_002163) hypothetical protein Cj1056c [Campylobacter jejuni]
pir||E81308 hypothetical protein Cj1056c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73312.1| (AL139077) hypothetical protein Cj1056c [Campylobacter jejuni]
Length = 258
Score = 148 bits (374), Expect = 5e-35
Identities = 91/237 (38%), Positives = 128/237 (53%), Gaps = 15/237 (6%)
Query: 27 SVIVLPEYVINPFFHHNMGLDVNEISDQSARAVEFLSQKCEELDLIVSAPVLLEEHSKIY 86
+++VL EYVIN FF + + N I +QS E L + ++ +L + AP + E +K Y
Sbjct: 32 NLVVLGEYVINSFFTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVE-AKSY 90
Query: 87 KKIAL-ISKESVKYYTQQRLIPYPHWDEESFFDNEKSAFKELLVFERDGLKFAPLFGFEA 145
KK+ L ++ VK Y QQ L+PY HW+EE FF N+ + ++ F + LK A LFGFE
Sbjct: 91 KKLCLKVTPNGVKSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFET 150
Query: 146 HFDEIWVQAKNQGVDVVLLSSVATFESNERWRLLCQMRAFCASCVVVRANRIGAYRQIIV 205
HFD W Q + +D+V++ S TFES +RW L + RAF S ++R NRIG
Sbjct: 151 HFDIFWQQIMAKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIG------- 203
Query: 206 EEDQKNEFLWKFYGDSFVALPNGAIEDSLEGKMGALNAQIDKNDIDEWAKLWHFRTI 262
K + W FYGD+ G IE L + L + K+ DE KLW F I
Sbjct: 204 ----KTKDEWNFYGDTLFINAFGEIESKLGSEEEMLIIEPKKS--DEARKLWGFDKI 254
>gb|AAL59935.1| (AY072113) putative nitrilase [Arabidopsis thaliana]
gb|AAM67496.1| (AY122963) putative nitrilase [Arabidopsis thaliana]
Length = 326
Score = 51.2 bits (121), Expect = 1e-05
Identities = 51/206 (24%), Positives = 87/206 (41%), Gaps = 17/206 (8%)
Query: 62 LSQKCEELDLIVSAPVLLEEHSKIYKKIALISKESVKY--YTQQRLIPYPHWDEESFFDN 119
+ + +EL +++ E ++ Y IA+I + Y + + P + E+ +F+
Sbjct: 107 MQKLAKELGVVIPVSFFEEANTAHYNSIAIIDADGTDLGIYRKSHIPDGPGYQEKFYFNP 166
Query: 120 EKSAFKELLVFERDGLKFAPLFGFEAHFDEIWVQAKNQGVDVVLLSSVATFE-------S 172
+ FK VF+ K ++ F E QG +++ + E S
Sbjct: 167 GDTGFK---VFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDQGLDS 223
Query: 173 NERWRLLCQMRAFCASCVVVRANRIGAYRQIIVEEDQKNEFLWKFYGDSFVALPNGAIED 232
+ WR + Q A +V +NRIG ++II E ++ FYG SF+A P G I
Sbjct: 224 RDHWRRVMQGHAGANVVPLVASNRIG--KEIIETEHGPSQIT--FYGTSFIAGPTGEIVA 279
Query: 233 SLEGKMGA-LNAQIDKNDIDEWAKLW 257
+ K A L AQ D + I + W
Sbjct: 280 EADDKSEAVLVAQFDLDMIKSKRQSW 305
>ref|NP_565650.1| (NM_128305) putative nitrilase [Arabidopsis thaliana]
gb|AAD15597.2| (AC006232) putative nitrilase [Arabidopsis thaliana]
gb|AAM63266.1| (AY086056) putative nitrilase [Arabidopsis thaliana]
Length = 299
Score = 51.2 bits (121), Expect = 1e-05
Identities = 51/206 (24%), Positives = 87/206 (41%), Gaps = 17/206 (8%)
Query: 62 LSQKCEELDLIVSAPVLLEEHSKIYKKIALISKESVKY--YTQQRLIPYPHWDEESFFDN 119
+ + +EL +++ E ++ Y IA+I + Y + + P + E+ +F+
Sbjct: 80 MQKLAKELGVVIPVSFFEEANTAHYNSIAIIDADGTDLGIYRKSHIPDGPGYQEKFYFNP 139
Query: 120 EKSAFKELLVFERDGLKFAPLFGFEAHFDEIWVQAKNQGVDVVLLSSVATFE-------S 172
+ FK VF+ K ++ F E QG +++ + E S
Sbjct: 140 GDTGFK---VFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDQGLDS 196
Query: 173 NERWRLLCQMRAFCASCVVVRANRIGAYRQIIVEEDQKNEFLWKFYGDSFVALPNGAIED 232
+ WR + Q A +V +NRIG ++II E ++ FYG SF+A P G I
Sbjct: 197 RDHWRRVMQGHAGANVVPLVASNRIG--KEIIETEHGPSQIT--FYGTSFIAGPTGEIVA 252
Query: 233 SLEGKMGA-LNAQIDKNDIDEWAKLW 257
+ K A L AQ D + I + W
Sbjct: 253 EADDKSEAVLVAQFDLDMIKSKRQSW 278
>ref|NP_389240.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
pir||E69863 conserved hypothetical protein ykrU - Bacillus subtilis
emb|CAB13230.1| (Z99111) similar to hypothetical proteins [Bacillus subtilis]
Length = 259
Score = 48.9 bits (115), Expect = 6e-05
Identities = 62/248 (25%), Positives = 108/248 (43%), Gaps = 31/248 (12%)
Query: 13 ENLMQSLFNSIPKKS----VIVLPEYVINPFFHHNMGLDVNEISDQSARAVEFLSQKCEE 68
EN+ ++ F I K+S V+VLPE + N+ +E++D+ R+ + +K +
Sbjct: 19 ENIKKAEF-FIEKESKHADVLVLPELWTTGYDLANL----DELADEDGRSAQSWLKKTAK 73
Query: 69 LD--LIVSAPVLLEEHSKIYKKIALISKES--VKYYTQQRLIPYPHWDEESFFDNEKSAF 124
IV+ V + ++S +Y + + KE +K Y + L + DE + SA
Sbjct: 74 KHGVHIVAGSVAVRKNSDVYNTMYIADKEGQIIKEYRKAHL--FQLMDEHLYL----SAG 127
Query: 125 KELLVFERDGLKFAPLFGFEAHFDEIWVQAKNQGVDVVLLSSVATFESNERWRLLCQMRA 184
E FE DG+K + L ++ F E + +G +V+ +S+ + W+ L RA
Sbjct: 128 SEDGYFELDGVKSSGLICYDIRFPEWIRKHTTKGANVLFISAEWPLPRLDHWKSLLIARA 187
Query: 185 FCASCVVVRANRIGAYRQIIVEEDQKNEFLWKFYGDSFVALPNGAIEDSLEGKMGALNAQ 244
C V N G+ + NEF G S + P G + + G + A+
Sbjct: 188 IENQCFVAACNCTGS--------NPDNEFA----GHSLIIDPWGRVLAEGGREEGIVRAE 235
Query: 245 IDKNDIDE 252
ID + E
Sbjct: 236 IDLQESAE 243
>emb|CAB45873.1| (Y19104) beta-alanine synthase [Lycopersicon esculentum]
Length = 300
Score = 48.9 bits (115), Expect = 6e-05
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 17/201 (8%)
Query: 67 EELDLIVSAPVLLEEHSKIYKKIALISKESVKY--YTQQRLIPYPHWDEESFFDNEKSAF 124
+EL +++ E ++ Y +A+I + Y + + P + E+ +F+ + F
Sbjct: 83 KELGVVIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKYYFNPGDTGF 142
Query: 125 KELLVFERDGLKFAPLFGFEAHFDEIWVQAKNQGVDVVLLSSVATFE-------SNERWR 177
K VF+ K ++ F E QG +V+ + E S + WR
Sbjct: 143 K---VFQTKYAKIGVAICWDQWFPEAARAMALQGAEVLFYPTAIGSEPQDDGLDSRDHWR 199
Query: 178 LLCQMRAFCASCVVVRANRIGAYRQIIVEEDQKNEFLWKFYGDSFVALPNGAIEDSLEGK 237
+ Q A +V +NRIG ++II E +E FYG SF+A P G + + K
Sbjct: 200 RVMQGHAGANVVPLVASNRIG--KEIIETEHGNSEI--TFYGYSFIAGPTGELVAAAGDK 255
Query: 238 MGA-LNAQIDKNDIDEWAKLW 257
A L AQ D + I W
Sbjct: 256 EEAVLVAQFDLDKIKSKRHGW 276
>ref|NP_213067.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||A70310 conserved hypothetical protein aq_103 - Aquifex aeolicus
gb|AAC06470.1| (AE000673) hypothetical protein [Aquifex aeolicus]
Length = 246
Score = 47.4 bits (111), Expect = 2e-04
Identities = 56/256 (21%), Positives = 111/256 (42%), Gaps = 25/256 (9%)
Query: 1 MRVFALQLESF--KENLMQ--SLFNSIPKKSVIVLPEYVINPFFHHNMGLDVNEISDQSA 56
M+++++Q+ +ENL + + + + S+++LPE + F + N+ E + ++
Sbjct: 1 MKLYSIQIRQTTPEENLKKVINFLEKVEENSLVLLPEMWYSGFDYENL----EEHAQKTP 56
Query: 57 RAVEFLSQKCEELDLIVSAPVLLEEHSKIYKKIALISKESVKYYTQQRLIPYPHWDEESF 116
+E L + +E L + L E+ ++ A + ++ + ++ +P +DE+ +
Sbjct: 57 EVLEVLKKISKEKSLTLCG-TLPEKGTEGILNTAFLIEDGRVIGKRSKIKLFPIFDEDKY 115
Query: 117 FDNEKSAFKELLVFERDGLKFAPLFGFEAHFDEIWVQAKNQGVDVVLLSSVATFESNERW 176
F KE VFE K L FE F ++ + + DVVL+ + + + +
Sbjct: 116 F----IPGKENKVFETKLGKAGILICFEIRFTDLIMNFWRERPDVVLVPAQWGYARRKHF 171
Query: 177 RLLCQMRAFCASCVVVRANRIGAYRQIIVEEDQKNEFLWKFYGDSFVALPNGAIEDSLEG 236
LC+ RA ++ +N G Y +F G S + P G + E
Sbjct: 172 ETLCRARAIELQAYLLASNTWGEYLGT------------RFAGHSGIYSPWGEVLAFSEK 219
Query: 237 KMGALNAQIDKNDIDE 252
L A DK+ I+E
Sbjct: 220 GDTLLAADYDKDYIEE 235
>ref|NP_348291.1| (NC_003030) Predicted amidohydrolase [Clostridium acetobutylicum]
gb|AAK79631.1|AE007676_1 (AE007676) Predicted amidohydrolase [Clostridium acetobutylicum]
Length = 260
Score = 46.2 bits (108), Expect = 4e-04
Identities = 51/259 (19%), Positives = 107/259 (40%), Gaps = 24/259 (9%)
Query: 3 VFALQLESFKENLMQSLFNSIPKKS-VIVLPEYVINPFFHHNMGLDVNEISDQSARAVEF 61
VF E KE + + + KK+ +I+ PE + F + V++I + +E+
Sbjct: 10 VFFEDKERTKEKCLNFMKKAADKKADLIIFPEMTLTGF-----SMKVDKIGENKFETLEW 64
Query: 62 LSQKCEELDLIVSAPVLLEEHSKIYKKIALISKESVKYYTQQRLIPYPHWDEESFFDNEK 121
+K +E + I S +E K ++ S + +L P+ + +E+ +F
Sbjct: 65 FKEKSKEFN-IYSGFGFVEGTKKGKNNFSICSPLGEEILRYTKLHPFSYGNEDKYFYKGN 123
Query: 122 SAFKELLVFERDGLKFAPLFGFEAHFDEIWVQAKNQGVDVVLLSSVATFESNERWRLLCQ 181
E++ + + ++ F EI+ +A + ++++++ E+W L +
Sbjct: 124 ----EIVYCKIGDFNISTFICYDLRFPEIFQKASKESECILIIANWPKVR-REQWIALIK 178
Query: 182 MRAFCASCVVVRANRIGAYRQIIVEEDQKNEFLWKFYGDSFVALPNGAIEDSLEGKMGAL 241
RA + NR+G + + L+ + GDS V P G I K L
Sbjct: 179 ARAIETQSYIAAVNRVG-----------EGDGLY-YSGDSMVVNPYGEITAFKSEKEELL 226
Query: 242 NAQIDKNDIDEWAKLWHFR 260
I+ N++ + + + F+
Sbjct: 227 ICDININEVKKCREEFRFK 245
>ref|NP_241913.1| (NC_002570) BH1047~unknown conserved protein [Bacillus halodurans]
dbj|BAB04766.1| (AP001510) BH1047~unknown conserved protein [Bacillus halodurans]
Length = 271
Score = 45.4 bits (106), Expect = 6e-04
Identities = 41/196 (20%), Positives = 83/196 (41%), Gaps = 13/196 (6%)
Query: 7 QLESFKENLMQSLFNSIPKKSVIVLPEYVINPFFHHNMGLDVNEISDQSARAVE-FLSQK 65
+++ + E++MQ +P ++VLPE + + +++ R E FL +
Sbjct: 21 KVKEWIEDVMQQ--EDVP--DLLVLPEMWTTAYTLDQL----EHLAEGEERYTELFLKEL 72
Query: 66 CEELDL-IVSAPVLLEEHSKIYKKIALISKESVKYYTQQRLIPYPHWDEESFFDNEKSAF 124
E ++ IV+ + +E K+Y + + + Y ++ P E + +A
Sbjct: 73 AREHNVNIVAGSIAKKEKGKLYNRALVFDRRGHTVYQYDKIHLVPMLSEPDYLTGGDAAA 132
Query: 125 KELLVFERDGLKFAPLFGFEAHFDEIWVQAKNQGVDVVLLSSVATFESNERWRLLCQMRA 184
VFE +G K + ++ F E+ +G ++V + + W +L + RA
Sbjct: 133 S---VFELEGTKMGLVICYDLRFPELMRSLALEGAEIVFIVAEWPEARAVHWEVLQRARA 189
Query: 185 FCASCVVVRANRIGAY 200
V+ NR+GAY
Sbjct: 190 IENQSYVISCNRVGAY 205
>ref|NP_588519.1| (NC_003421) hypothetical protein [Schizosaccharomyces pombe]
pir||T41662 probable nitrilase - fission yeast (Schizosaccharomyces pombe)
emb|CAA19069.1| (AL023590) hypothetical protein [Schizosaccharomyces pombe]
Length = 272
Score = 44.7 bits (104), Expect = 0.001
Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 27/240 (11%)
Query: 16 MQSLFNSIPKKSVIVLPEYVINPFFHHNMGLDVNEISDQ--SARAVEFLSQKCEELDLIV 73
+ + S P ++I+ PE + + + N + EI+ + S + + L+ K +++I
Sbjct: 28 VHEVMESNPSTNLILFPELITSGYECGNTFTQIAEIAGEGPSFKTMSNLAAKYH-VNIIY 86
Query: 74 SAPVLLEEHSKIYKKIALISKESVKYYTQQRLIPYPHWDEESFFDNEKSAFK---ELLVF 130
P E+ S I + E+ R + FD E+ FK + +F
Sbjct: 87 GFPEKEEKQSNIIYNSCIYITENGNLGGVYRKV--------HLFDTERKHFKKGSDFPIF 138
Query: 131 ERDGLKFAPLFGFEAHFDEIWVQAKNQGVDVVLLSSVATFESNERWRLLCQMRAFCASCV 190
E K + ++ F E+ G D++++++ ++ W L+ + RAF
Sbjct: 139 ETSFGKLGVMICWDTAFPEVARIHALNGADLLVVATNWENPYSDDWDLVTKARAFENCIP 198
Query: 191 VVRANRIGAYRQIIVEEDQKNEFLWKFYGDSFVALPNGAIEDSL-EGKMGALNAQIDKND 249
+V ANR+G D+K F+G S + P G + +L E K G ++ +D +D
Sbjct: 199 LVAANRVGT--------DEK----LSFFGHSKIIGPTGKVIKALDEEKEGVISYTVDLDD 246
>ref|NP_649732.1| (NM_141475) pyd3 gene product [Drosophila melanogaster]
gb|AAK60520.1|AF333187_1 (AF333187) beta-alanine synthase [Drosophila melanogaster]
Length = 386
Score = 44.3 bits (103), Expect = 0.001
Identities = 46/218 (21%), Positives = 90/218 (41%), Gaps = 14/218 (6%)
Query: 54 QSARAVEFLSQKCEELDLIVSAPVLLE--EHSKIYKKIALISKESVKYYTQQRLIPYPH- 110
++ + L++ + ++++ +L EH + A++ S +Y + R P
Sbjct: 144 ENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRV 203
Query: 111 --WDEESFFDNEKSAFKELLVFERDGLKFAPLFGFEAHFDEIWVQAKNQGVDVVLLSSVA 168
++E +++ + VFE + K A + H + W+ G ++V S
Sbjct: 204 GDFNESTYYMEGNTGHP---VFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSAT 260
Query: 169 TFESNER-WRLLCQMRAFCASCVVVRANRIGAYR----QIIVEEDQKNEFLWKFYGDSFV 223
+E W + + A S V NR+G + + ++ ++ FYG S+V
Sbjct: 261 IGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYV 320
Query: 224 ALPNGAIEDSL-EGKMGALNAQIDKNDIDEWAKLWHFR 260
A P+G+ SL K G L ++D N + W FR
Sbjct: 321 AAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFR 358
>ref|NP_469655.1| (NC_003212) conserved hypothetical protein [Listeria innocua]
emb|CAC95543.1| (AL596164) conserved hypothetical protein [Listeria innocua]
Length = 259
Score = 43.1 bits (100), Expect = 0.003
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 32/232 (13%)
Query: 28 VIVLPEYVINPFFHHNMGLDVNEISD----QSARAVEFLSQKCEELDL-IVSAPVLLEEH 82
+ VLPE N G +NE++ R EFL+ E+ + I+ V + E
Sbjct: 37 IAVLPEM-------WNTGYALNELAGVADLNGERTKEFLAGLSEKHQIAIIGGSVSISEG 89
Query: 83 SKIYKKIALISKESVKYYTQQRLIPYPHWDEESFFD--NEKSAFKELLVFERDGLKFAPL 140
SK + K + +++ + +E + + N+K+ F+ DG+ A
Sbjct: 90 SKFSNTMYAFDKYGGLLSSYKKVHLFQLMNEHLYLEPGNDKNLFR------LDGISCAGF 143
Query: 141 FGFEAHFDEIWVQAKNQGVDVVLLSSVATFESNERWRLLCQMRAFCASCVVVRANRIGAY 200
++ F E + ++G +V+ +S+ E ++W L RA VV NR+G
Sbjct: 144 ICYDIRFPEWIRKHTSEGSEVIFVSAQWPAERIKQWEQLLIARAIENQAFVVAVNRVG-- 201
Query: 201 RQIIVEEDQKNEFLWKFYGDSFVALPNGAIEDSLEGKMGALNAQIDKNDIDE 252
+D N F G S V P G + + G + A+ID N + E
Sbjct: 202 ------DDPNNH----FNGHSLVIDPLGNVIVHGGEEEGNIYAEIDLNLVAE 243
>dbj|BAB59126.1| (AB062681) putative hydrolase [Oryza sativa (japonica
cultivar-group)]
Length = 301
Score = 42.7 bits (99), Expect = 0.004
Identities = 44/201 (21%), Positives = 82/201 (39%), Gaps = 17/201 (8%)
Query: 67 EELDLIVSAPVLLEEHSKIYKKIALISKESVKY--YTQQRLIPYPHWDEESFFDNEKSAF 124
+EL++++ E ++ Y +A+I + Y + + P + E+ +F+ + F
Sbjct: 86 KELEVVIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGF 145
Query: 125 KELLVFERDGLKFAPLFGFEAHFDEIWVQAKNQGVDVVLLSSVA-------TFESNERWR 177
K F+ ++ F E QG +++ + +S E W+
Sbjct: 146 K---AFKTKYATIGVGICWDQWFPECARAMVLQGAEILFYPTAIGSEPQDNNLDSREHWK 202
Query: 178 LLCQMRAFCASCVVVRANRIGAYRQIIVEEDQKNEFLWKFYGDSFVALPNGAIEDSLEGK 237
+ Q A +V +NRIG R+ + E + E F+G+SF+A P G I K
Sbjct: 203 RVMQGHAGANLVPLVASNRIG--RETV--ETEHGESTITFFGNSFIAGPTGEIVKLANDK 258
Query: 238 -MGALNAQIDKNDIDEWAKLW 257
L A+ D ++I W
Sbjct: 259 DEDVLVAEFDLDEIKSTRHGW 279
>ref|NP_463813.1| (NC_003210) conserved hypothetical protein [Listeria monocytogenes
EGD-e]
emb|CAD00809.1| (AL591974) conserved hypothetical protein [Listeria monocytogenes]
Length = 259
Score = 42.0 bits (97), Expect = 0.007
Identities = 55/232 (23%), Positives = 94/232 (39%), Gaps = 32/232 (13%)
Query: 28 VIVLPEYVINPFFHHNMGLDVNEISD----QSARAVEFLSQKCEELDL-IVSAPVLLEEH 82
+ VLPE N G +NE++ R EFL+ E+ + I+ V + E
Sbjct: 37 IAVLPEM-------WNTGYALNELAGVADLNGGRTKEFLATLSEKHQIAIIGGSVSISEG 89
Query: 83 SKIYKKIALISKESVKYYTQQRLIPYPHWDEESFFD--NEKSAFKELLVFERDGLKFAPL 140
+K + K + +++ + +E + + N+K+ F+ DG+ A
Sbjct: 90 TKFSNTMYAFDKYGGLLSSYKKVHLFQLMNEHLYLEAGNDKNLFR------LDGVSCAGF 143
Query: 141 FGFEAHFDEIWVQAKNQGVDVVLLSSVATFESNERWRLLCQMRAFCASCVVVRANRIGAY 200
++ F E + ++G +V+ +S+ E +W L RA VV NR+G
Sbjct: 144 ICYDIRFPEWIRKHTSEGSEVIFVSAQWPAERVTQWEQLLIARAIENQTFVVAVNRVG-- 201
Query: 201 RQIIVEEDQKNEFLWKFYGDSFVALPNGAIEDSLEGKMGALNAQIDKNDIDE 252
+D N F G S V P G I + G + A+ID N + E
Sbjct: 202 ------DDPNNH----FNGHSLVIDPLGNIVVHGGEEEGNIYAEIDLNLVAE 243
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.137 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,196,624
Number of Sequences: 1026957
Number of extensions: 6490478
Number of successful extensions: 17184
Number of sequences better than 1.0e-02: 15
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 17175
Number of HSP's gapped (non-prelim): 15
length of query: 265
length of database: 324,149,939
effective HSP length: 119
effective length of query: 146
effective length of database: 201,942,056
effective search space: 29483540176
effective search space used: 29483540176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 96 (41.6 bits)