BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646091|ref|NP_208273.1| hypothetical protein
[Helicobacter pylori 26695]
(86 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208273.1| (NC_000915) hypothetical protein [Helicoba... 176 6e-44
ref|NP_224093.1| (NC_000921) putative [Helicobacter pylori ... 157 2e-38
sp|P58001|EX7S_CHLTR Probable exodeoxyribonuclease VII smal... 41 0.002
>ref|NP_208273.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
sp|O26016|EX7S_HELPY Probable exodeoxyribonuclease VII small subunit (Exonuclease VII
small subunit)
pir||B64705 hypothetical protein HP1482 - Helicobacter pylori (strain 26695)
gb|AAD08532.1| (AE000647) H. pylori predicted coding region HP1482 [Helicobacter
pylori 26695]
Length = 86
Score = 176 bits (445), Expect = 6e-44
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 MQDELFETEKIPPKNTKNTKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLYKTAMQ 60
MQDELFETEKIPPKNTKNTKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLYKTAMQ
Sbjct: 1 MQDELFETEKIPPKNTKNTKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLYKTAMQ 60
Query: 61 ELFLAQKLLENAYLEHEKLQTPDQKA 86
ELFLAQKLLENAYLEHEKLQTPDQKA
Sbjct: 61 ELFLAQKLLENAYLEHEKLQTPDQKA 86
>ref|NP_224093.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZJD7|EX7S_HELPJ Probable exodeoxyribonuclease VII small subunit (Exonuclease VII
small subunit)
pir||B71815 hypothetical protein jhp1375 - Helicobacter pylori (strain J99)
gb|AAD06946.1| (AE001560) putative [Helicobacter pylori J99]
Length = 86
Score = 157 bits (397), Expect = 2e-38
Identities = 77/86 (89%), Positives = 80/86 (92%)
Query: 1 MQDELFETEKIPPKNTKNTKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLYKTAMQ 60
MQDELFETEK P KN KN KNAPKKSFEEHVHSLER IDRLNDPNLSLKDGMDLYKTAMQ
Sbjct: 1 MQDELFETEKAPQKNAKNAKNAPKKSFEEHVHSLERVIDRLNDPNLSLKDGMDLYKTAMQ 60
Query: 61 ELFLAQKLLENAYLEHEKLQTPDQKA 86
ELFLAQKLLENAY E+EKLQTP++KA
Sbjct: 61 ELFLAQKLLENAYSEYEKLQTPNKKA 86
>sp|P58001|EX7S_CHLTR Probable exodeoxyribonuclease VII small subunit (Exonuclease VII
small subunit)
Length = 72
Score = 41.2 bits (95), Expect = 0.002
Identities = 24/71 (33%), Positives = 38/71 (52%), Gaps = 2/71 (2%)
Query: 16 TKNTKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLYKTAMQELFLAQKLLENAYLE 75
TK KN K SFE+ + LE ID +N P SL+ + LY+ A Q + + + ++ +E
Sbjct: 2 TKKAKNVEKISFEDAMKRLEEIIDLMNQPTTSLEASLALYEEADQLMRICESRIQE--VE 59
Query: 76 HEKLQTPDQKA 86
Q DQ++
Sbjct: 60 ARIKQLSDQRS 70
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.309 0.128 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,509,660
Number of Sequences: 1026957
Number of extensions: 1870988
Number of successful extensions: 5332
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5329
Number of HSP's gapped (non-prelim): 3
length of query: 86
length of database: 324,149,939
effective HSP length: 62
effective length of query: 24
effective length of database: 260,478,605
effective search space: 6251486520
effective search space used: 6251486520
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 90 (39.3 bits)