BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644779|ref|NP_206949.1| hypothetical protein
[Helicobacter pylori 26695]
(196 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206949.1| (NC_000915) hypothetical protein [Helicoba... 399 e-110
ref|NP_222859.1| (NC_000921) putative [Helicobacter pylori ... 374 e-103
>ref|NP_206949.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64538 hypothetical protein HP0150 - Helicobacter pylori (strain 26695)
gb|AAD07224.1| (AE000536) H. pylori predicted coding region HP0150 [Helicobacter
pylori 26695]
Length = 196
Score = 399 bits (1024), Expect = e-110
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MKEKNFWPLGIMSVLILGLGIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYEN 60
MKEKNFWPLGIMSVLILGLGIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYEN
Sbjct: 1 MKEKNFWPLGIMSVLILGLGIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYEN 60
Query: 61 FKSNYRFLVGLKPLIKSPKTPILPYFSKGTHGDKKLQENLLNNALILEKSNTLYAQLQPL 120
FKSNYRFLVGLKPLIKSPKTPILPYFSKGTHGDKKLQENLLNNALILEKSNTLYAQLQPL
Sbjct: 61 FKSNYRFLVGLKPLIKSPKTPILPYFSKGTHGDKKLQENLLNNALILEKSNTLYAQLQPL 120
Query: 121 KPALDSPNIQVYLAFYPSPSQPRWLGTLDCKNACEPLKFDLLESDKMGRYKILFKFVFKN 180
KPALDSPNIQVYLAFYPSPSQPRWLGTLDCKNACEPLKFDLLESDKMGRYKILFKFVFKN
Sbjct: 121 KPALDSPNIQVYLAFYPSPSQPRWLGTLDCKNACEPLKFDLLESDKMGRYKILFKFVFKN 180
Query: 181 KEELILEQLAFFKQRI 196
KEELILEQLAFFKQRI
Sbjct: 181 KEELILEQLAFFKQRI 196
>ref|NP_222859.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71970 hypothetical protein jhp0138 - Helicobacter pylori (strain J99)
gb|AAD05717.1| (AE001452) putative [Helicobacter pylori J99]
Length = 193
Score = 374 bits (960), Expect = e-103
Identities = 184/193 (95%), Positives = 187/193 (96%)
Query: 1 MKEKNFWPLGIMSVLILGLGIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYEN 60
MKEKNFWPLGIMSVLI GLGIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYEN
Sbjct: 1 MKEKNFWPLGIMSVLIFGLGIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYEN 60
Query: 61 FKSNYRFLVGLKPLIKSPKTPILPYFSKGTHGDKKLQENLLNNALILEKSNTLYAQLQPL 120
FKSNYRF VGLKPL +SPKTPILPYFSKGTHGDKK+QENLLNNALILEKSNTLYAQLQPL
Sbjct: 61 FKSNYRFSVGLKPLTESPKTPILPYFSKGTHGDKKIQENLLNNALILEKSNTLYAQLQPL 120
Query: 121 KPALDSPNIQVYLAFYPSPSQPRWLGTLDCKNACEPLKFDLLESDKMGRYKILFKFVFKN 180
KPALDSPNIQVYLAFYPS SQPR LGTLDCKNACEPLKFDLLE DK+GRYKILFKFVFKN
Sbjct: 121 KPALDSPNIQVYLAFYPSQSQPRLLGTLDCKNACEPLKFDLLEGDKVGRYKILFKFVFKN 180
Query: 181 KEELILEQLAFFK 193
KEELILEQLAFFK
Sbjct: 181 KEELILEQLAFFK 193
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.142 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,434,303
Number of Sequences: 1026957
Number of extensions: 5646751
Number of successful extensions: 12180
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12178
Number of HSP's gapped (non-prelim): 2
length of query: 196
length of database: 324,149,939
effective HSP length: 115
effective length of query: 81
effective length of database: 206,049,884
effective search space: 16690040604
effective search space used: 16690040604
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 94 (40.8 bits)