BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646094|ref|NP_208276.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(190 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208276.1| (NC_000915) conserved hypothetical protein... 372 e-102
ref|NP_224096.1| (NC_000921) putative [Helicobacter pylori ... 354 3e-97
ref|NP_281619.1| (NC_002163) hypothetical protein Cj0429c [... 120 6e-27
ref|NP_212564.1| (NC_001318) proline dipeptidase (pepQ) [Bo... 100 9e-21
ref|NP_267247.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococ... 98 4e-20
ref|NP_622761.1| (NC_003869) conserved hypothetical protein... 94 8e-19
ref|NP_602707.1| (NC_003454) Thymidylate synthase [Fusobact... 94 8e-19
ref|NP_346620.1| (NC_003028) conserved hypothetical protein... 92 2e-18
ref|NP_359605.1| (NC_003098) Conserved hypothetical protein... 92 2e-18
ref|NP_229512.1| (NC_000853) proline dipeptidase, putative ... 92 3e-18
gb|EAA01865.1| (AAAB01000659) ebiP3278 [Anopheles gambiae s... 91 7e-18
ref|NP_438880.1| (NC_000907) conserved hypothetical protein... 88 6e-17
ref|NP_246436.1| (NC_002663) unknown [Pasteurella multocida... 87 1e-16
ref|NP_275138.1| (NC_003112) conserved hypothetical protein... 87 1e-16
ref|NP_615743.1| (NC_003552) conserved hypothetical protein... 85 4e-16
ref|NP_326107.1| (NC_002771) PROLINE DIPEPTIDASE PEPQ [Myco... 85 5e-16
ref|NP_283080.1| (NC_003116) hypothetical protein NMA0240 [... 84 8e-16
pir||T44352 hypothetical protein [imported] - Clostridium h... 82 4e-15
ref|NP_384571.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 81 5e-15
ref|NP_348912.1| (NC_003030) Uncharacterized protein, YigZ ... 81 5e-15
ref|NP_466039.1| (NC_003210) similar to conserved hypotheti... 80 1e-14
ref|NP_371272.1| (NC_002758) conserved hypothetical protein... 79 3e-14
ref|NP_269669.1| (NC_002737) conserved hypothetical protein... 78 6e-14
ref|NP_471989.1| (NC_003212) similar to conserved hypotheti... 78 6e-14
ref|NP_541398.1| (NC_003318) THYMIDYLATE SYNTHASE [Brucella... 76 2e-13
ref|NP_244497.1| (NC_002570) BH3630~unknown conserved prote... 76 2e-13
ref|NP_562871.1| (NC_003366) conserved hypothetical protein... 75 3e-13
ref|NP_521396.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 75 3e-13
ref|NP_601326.1| (NC_003450) COG1739:Uncharacterized ACR [C... 75 5e-13
ref|NP_391431.1| (NC_000964) alternate gene name: yvhK~simi... 74 7e-13
ref|NP_444238.1| (NC_002607) Uncharacterized conserved prot... 74 9e-13
ref|NP_078096.1| (NC_002162) conserved hypothetical [Ureapl... 74 1e-12
ref|NP_457767.1| (NC_003198) conserved hypothetical protein... 72 3e-12
ref|NP_653644.1| (NC_003995) UPF0029, Uncharacterized prote... 72 3e-12
pir||A30191 hypothetical protein L - Bacillus subtilis (fra... 71 6e-12
ref|NP_625588.1| (NC_003888) conserved hypothetical protein... 69 2e-11
ref|NP_462870.1| (NC_003197) putative cytoplasmic protein [... 69 3e-11
sp|P27862|YIGZ_ECOLI Hypothetical protein yigZ 69 4e-11
emb|CAA38501.1| (X54687) pepQ product, proline dipeptidase ... 69 4e-11
ref|NP_232383.1| (NC_002505) conserved hypothetical protein... 69 4e-11
ref|NP_418290.1| (NC_000913) orf, hypothetical protein [Esc... 69 4e-11
ref|NP_290478.1| (NC_002655) orf, hypothetical protein [Esc... 69 4e-11
ref|NP_295925.1| (NC_001263) conserved hypothetical protein... 68 5e-11
ref|NP_356601.1| (NC_003063) AGR_L_1623p [Agrobacterium tum... 66 2e-10
ref|NP_248858.1| (NC_002516) conserved hypothetical protein... 66 2e-10
ref|NP_636855.1| (NC_003902) conserved hypothetical protein... 66 2e-10
gb|AAK00330.1|AF320250_3 (AF320250) YvyE [Lactobacillus del... 65 4e-10
pir||T05636 hypothetical protein F20D10.210 - Arabidopsis t... 64 1e-09
ref|NP_568034.1| (NM_119970) putative protein [Arabidopsis ... 64 1e-09
gb|AAM63017.1| (AY085801) unknown [Arabidopsis thaliana] 64 1e-09
sp|P32438|YPOL_THETH Hypothetical protein in pol 5'region 57 1e-07
ref|NP_641864.1| (NC_003919) conserved hypothetical protein... 57 1e-07
ref|NP_595912.1| (NC_003423) hypothetical protein [Schizosa... 49 3e-05
>ref|NP_208276.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||E64705 conserved hypothetical protein - Helicobacter pylori (strain 26695)
gb|AAD08520.1| (AE000647) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 190
Score = 372 bits (955), Expect = e-102
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MKTLKNLITSKHQTKASRFLGYLMPFDDFEKTLLQLKKEHFKAAHFVTAFRYSLEGKITE 60
MKTLKNLITSKHQTKASRFLGYLMPFDDFEKTLLQLKKEHFKAAHFVTAFRYSLEGKITE
Sbjct: 1 MKTLKNLITSKHQTKASRFLGYLMPFDDFEKTLLQLKKEHFKAAHFVTAFRYSLEGKITE 60
Query: 61 GFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVEN 120
GFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVEN
Sbjct: 61 GFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVEN 120
Query: 121 AQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENL 180
AQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENL
Sbjct: 121 AQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENL 180
Query: 181 QAFLQQNKIN 190
QAFLQQNKIN
Sbjct: 181 QAFLQQNKIN 190
>ref|NP_224096.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71815 hypothetical protein jhp1378 - Helicobacter pylori (strain J99)
gb|AAD06949.1| (AE001560) putative [Helicobacter pylori J99]
Length = 190
Score = 354 bits (909), Expect = 3e-97
Identities = 180/190 (94%), Positives = 188/190 (98%)
Query: 1 MKTLKNLITSKHQTKASRFLGYLMPFDDFEKTLLQLKKEHFKAAHFVTAFRYSLEGKITE 60
MKTLK+LITSKHQ KASRFLGYLMPFD+FEKTLLQLKKEHFKAAHFVTAFRYSLEGKITE
Sbjct: 1 MKTLKHLITSKHQIKASRFLGYLMPFDNFEKTLLQLKKEHFKAAHFVTAFRYSLEGKITE 60
Query: 61 GFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVEN 120
GFSDDGEPKGSSGMP+LSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVEN
Sbjct: 61 GFSDDGEPKGSSGMPVLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVEN 120
Query: 121 AQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENL 180
AQ+E+A KDFVELETLSA+YSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTR++L
Sbjct: 121 AQRENAFKDFVELETLSAYYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRDDL 180
Query: 181 QAFLQQNKIN 190
QAFLQQNKIN
Sbjct: 181 QAFLQQNKIN 190
>ref|NP_281619.1| (NC_002163) hypothetical protein Cj0429c [Campylobacter jejuni]
pir||C81387 hypothetical protein Cj0429c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB74265.1| (AL139075) hypothetical protein Cj0429c [Campylobacter jejuni]
Length = 194
Score = 120 bits (302), Expect = 6e-27
Identities = 68/162 (41%), Positives = 97/162 (58%), Gaps = 5/162 (3%)
Query: 1 MKTLKNLITSKHQTKASRFLGYLMPFDDFEKTLLQLKKEHFKAAHFVTAFRYSLE-GKIT 59
M+T+ + ++ K S FL +L PF DF+ + LKKEH KA HFV A+R + +I
Sbjct: 1 MQTIDQIFQTQIDIKKSTFLSFLCPFKDFKFLIETLKKEHPKAVHFVYAYRVLNDFNQIV 60
Query: 60 EGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVE 119
E SDDGEPKG+SGMP L+VLR DLIN L++VRYFGG LG GGL++AY+ +A +
Sbjct: 61 EDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKLGTGGLVRAYSDAANAVIN 120
Query: 120 NAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSK 161
N+ +L F + + K L+ + +K +S +K
Sbjct: 121 NS----SLLSFELKKNTTIAIDLKNLNRFEHFLKTYSFNFTK 158
>ref|NP_212564.1| (NC_001318) proline dipeptidase (pepQ) [Borrelia burgdorferi]
pir||E70153 conserved hypothetical protein - Lyme disease spirochete
gb|AAC66806.1| (AE001148) proline dipeptidase (pepQ) [Borrelia burgdorferi]
Length = 201
Score = 100 bits (249), Expect = 9e-21
Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 10/191 (5%)
Query: 5 KNLITSKHQTKASRFLGYLMPF---DDFEKTLLQLKKEHFKAAHFVTAFRYSLEGKITEG 61
KN SK + K S F+ Y+ DD KT+ + K + A H V FR + G
Sbjct: 6 KNNSNSKIEIKKSIFVSYIFNIEKKDDINKTIKKYKIKFKNATHVVYGFRIGNKNSFLNG 65
Query: 62 FSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENA 121
SDD EP ++G P L + +L + ++++RYFGGTLLG GGL+KAY KSA + N
Sbjct: 66 MSDDREPNLTAGKPTLDAIIHNNLTDTLIITLRYFGGTLLGRGGLIKAYYKSAKEVINNT 125
Query: 122 QKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQ---SVEVEISGTRE 178
++ + ELE LS + +Y + ++L + K +++ NFSN+ S++ + ++
Sbjct: 126 ----SIMEKEELEILSLNLTYNQYNSLLKMKNKLEIEIIDSNFSNKINTSIKFKTKNKQK 181
Query: 179 NLQAFLQQNKI 189
+ F++ I
Sbjct: 182 ISEFFIENGLI 192
>ref|NP_267247.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
gb|AAK05189.1|AE006341_8 (AE006341) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
Length = 209
Score = 98.2 bits (243), Expect = 4e-20
Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 8/165 (4%)
Query: 3 TLKNLITSKHQTKASRFLGYLMPFDDFEKT---LLQLKKEHFKAAHFVTAFRYSLEGKIT 59
T+K ++ + K SRF+ +L E+ + ++KKEH+KA H +A+ +I
Sbjct: 4 TIKTDFINEEEIKKSRFICHLKRISSEEEARDFIAKIKKEHWKANHNCSAYTLGDSQEI- 62
Query: 60 EGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVE 119
+ SDDGEP G++G+PML +L+++++IN+ V RYFGG LG GGL++AYA S V
Sbjct: 63 QRTSDDGEPSGTAGVPMLEILKKKEIINVCAVVTRYFGGIKLGAGGLIRAYAGS----VN 118
Query: 120 NAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNF 164
+A + L +F+ L + Y D+LQR + +++S F
Sbjct: 119 HAIEAVGLVEFINQRELILNLDYNLYDSLQRFLIDPKIKISDSEF 163
>ref|NP_622761.1| (NC_003869) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
gb|AAM24365.1| (AE013076) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
Length = 215
Score = 94.0 bits (232), Expect = 8e-19
Identities = 54/154 (35%), Positives = 91/154 (59%), Gaps = 8/154 (5%)
Query: 2 KTLKNLITSKHQTKASRFLGYLMPFDDFEKTLLQLKK---EHFKAAHFVTAFRYSLEGKI 58
KTL ++ + K S+F+G+ P E+ + ++K EH A H V A+ +I
Sbjct: 6 KTLLGYGVAEVEIKKSKFIGHASPVASEEEAIKFIEKIRAEHRLATHNVYAYVVGENDEI 65
Query: 59 TEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCV 118
+ FSDDGEP G++GMP+L+V+++++L N+ +V RYFGG LLG GGL++AY K+A + +
Sbjct: 66 -QRFSDDGEPSGTAGMPVLNVIKKQELKNVVVVVTRYFGGILLGAGGLVRAYTKAAKMGI 124
Query: 119 ENAQKEDALKDFVELETLSAHYSYKELDALQREI 152
+ A + + + + L + Y L +Q E+
Sbjct: 125 DAA----GIVEKIPAKELELTFDYNLLGKIQNEL 154
>ref|NP_602707.1| (NC_003454) Thymidylate synthase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94006.1| (AE010493) Thymidylate synthase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 195
Score = 94.0 bits (232), Expect = 8e-19
Identities = 51/172 (29%), Positives = 96/172 (55%), Gaps = 7/172 (4%)
Query: 1 MKTLKNLITSKHQTKASRFLGYLMPF---DDFEKTLLQLKKEHFKAAHFVTAFRYSLEGK 57
+KT+K + + K S+F+GY+ P ++ E+ + +K H A H +A++ + G
Sbjct: 4 IKTVKKECKIEFEEKKSKFIGYVKPVFSKEEAEEYIKYIKNLHSDATHNCSAYKINNNGL 63
Query: 58 ITEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLC 117
DDGEP G++G PM ++ ++ N+ +++ RYFGG LG GGL++ YAK+A L
Sbjct: 64 EFFKVDDDGEPSGTAGKPMGDIINYMEVSNLVVIATRYFGGIKLGAGGLVRNYAKTAKLA 123
Query: 118 VENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSV 169
+ A+ + DF++ L Y+ L +++ +K++ ++ K+F + V
Sbjct: 124 ITEAE----IIDFIDKIDLIFEIPYERLGEVEKLLKEYEAEVIDKSFLEKIV 171
>ref|NP_346620.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
gb|AAK76260.1| (AE007508) conserved hypothetical protein [Streptococcus pneumoniae
TIGR4]
Length = 211
Score = 92.4 bits (228), Expect = 2e-18
Identities = 59/169 (34%), Positives = 88/169 (51%), Gaps = 8/169 (4%)
Query: 2 KTLKNLITSKHQTKASRFLGYLMPFDDFEKT---LLQLKKEHFKAAHFVTAFRYSLEGKI 58
+T+K + + K SRF+ + E+ + +KKEH+KA H +AF +I
Sbjct: 4 RTIKEDGQVQEEIKKSRFICHAKRVYSEEEARDFITAIKKEHYKATHNCSAFIIGERSEI 63
Query: 59 TEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCV 118
SDDGEP G++G+PML VL +L N+ +V RYFGG LG GGL++AYA S L V
Sbjct: 64 KRT-SDDGEPSGTAGVPMLGVLENHNLTNVCVVVTRYFGGIKLGAGGLIRAYAGSVALAV 122
Query: 119 ENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQ 167
KE + + E ++ SY + +K+ L NF++Q
Sbjct: 123 ----KEIGIIEIKEQAGIAIQMSYAQYQEYSNFLKEHGLMELDTNFTDQ 167
>ref|NP_359605.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAL00816.1| (AE008565) Conserved hypothetical protein [Streptococcus pneumoniae
R6]
Length = 211
Score = 92.4 bits (228), Expect = 2e-18
Identities = 59/169 (34%), Positives = 88/169 (51%), Gaps = 8/169 (4%)
Query: 2 KTLKNLITSKHQTKASRFLGYLMPFDDFEKT---LLQLKKEHFKAAHFVTAFRYSLEGKI 58
+T+K + + K SRF+ + E+ + +KKEH+KA H +AF +I
Sbjct: 4 RTIKEDGQVQEEIKKSRFICHAKRVYSEEEARDFITAIKKEHYKATHNCSAFIIGERSEI 63
Query: 59 TEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCV 118
SDDGEP G++G+PML VL +L N+ +V RYFGG LG GGL++AYA S L V
Sbjct: 64 KRT-SDDGEPSGTAGVPMLGVLENHNLTNVCVVVTRYFGGIKLGAGGLIRAYAGSVALAV 122
Query: 119 ENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQ 167
KE + + E ++ SY + +K+ L NF++Q
Sbjct: 123 ----KEIGIIEIKEQAGIAIQMSYAQYQEYSNFLKEHDLMELDTNFTDQ 167
>ref|NP_229512.1| (NC_000853) proline dipeptidase, putative [Thermotoga maritima]
pir||B72222 hypothetical protein TM1713 - Thermotoga maritima (strain MSB8)
gb|AAD36779.1|AE001810_18 (AE001810) proline dipeptidase, putative [Thermotoga maritima]
Length = 191
Score = 92.0 bits (227), Expect = 3e-18
Identities = 60/183 (32%), Positives = 96/183 (51%), Gaps = 9/183 (4%)
Query: 2 KTLKNLITSKHQTKASRFLGYLMPFDDFEKTLLQLKKEHFK--AAHFVTAFRYSLEGKIT 59
KT+ T + K S F + P D EK + KE K A H A+R I
Sbjct: 4 KTVVKPHTERINVKRSEFYATIFPVKD-EKDFREKLKEVSKRDATHNCWAYRIFSPNGIL 62
Query: 60 EGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVE 119
E SDDGEP G++G P+L L++ DL+N +V RYFGG LGV GL++AY+ +A + V+
Sbjct: 63 EHSSDDGEPSGTAGRPILGALKKYDLMNTAIVVTRYFGGVKLGVRGLIEAYSSAAEMAVK 122
Query: 120 NAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTR-- 177
A+ L+ ++ Y+EL+ + R ++ L+L + +++ + ++ + G
Sbjct: 123 GAE----LRKLRLMKEFEVEVDYQELNNVFRVVEMMGLELVEMDYTERGAKILLRGLEVP 178
Query: 178 ENL 180
ENL
Sbjct: 179 ENL 181
>gb|EAA01865.1| (AAAB01000659) ebiP3278 [Anopheles gambiae str. PEST]
Length = 150
Score = 90.9 bits (224), Expect = 7e-18
Identities = 56/132 (42%), Positives = 79/132 (59%), Gaps = 6/132 (4%)
Query: 15 KASRFLGYLMPF---DDFEKTLLQLKKEHFKAAHFVTAFRYSLEGKITEGFSDDGEPKGS 71
K S+F+ Y P DD +K L ++K H KA H AFR L+G+ +DDGEP GS
Sbjct: 4 KGSKFISYAYPVLDEDDVKKRLEEVKTLHPKATHHCYAFRLGLKGENYRA-NDDGEPSGS 62
Query: 72 SGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENAQKEDALKDFV 131
+G+P+ + L D+ NI LV VRY+GGT LGVGGL+K Y +SA + A E K+
Sbjct: 63 AGLPIYNQLLGHDVTNILLVVVRYYGGTKLGVGGLVKIYKESAKELLSFA--EMITKELE 120
Query: 132 ELETLSAHYSYK 143
++ TL +S++
Sbjct: 121 KVLTLEFDFSHQ 132
>ref|NP_438880.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44842|YIGZ_HAEIN Hypothetical protein HI0722
pir||I64088 conserved hypothetical protein HI0722 - Haemophilus influenzae
(strain Rd KW20)
gb|AAC22380.1| (U32755) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 206
Score = 87.8 bits (216), Expect = 6e-17
Identities = 60/186 (32%), Positives = 97/186 (51%), Gaps = 15/186 (8%)
Query: 5 KNLITSKHQTKASRFLGYLMPFDDFEKTLL---QLKKEHFKAAHFVTAFRYSLEGKITE- 60
K+ + + + K SRF+ YL + E ++K+EH A H A ++ GK T+
Sbjct: 8 KSAVVFEEEIKKSRFITYLQHTEGLEDARAFWAKIKQEHPNARHHCWA---AVAGKPTDS 64
Query: 61 ---GFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLC 117
GFSDDGEP G++G PMLS L+ L I V VRY+GG LLG GGL++AY
Sbjct: 65 LQLGFSDDGEPAGTAGKPMLSALQGSQLGEISAVVVRYYGGILLGTGGLVRAYGNG---- 120
Query: 118 VENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTR 177
V+ A K + VE Y +L +Q+ +K+ +++ + F ++ + + +
Sbjct: 121 VQQALKLIESEIKVERTLFKLDCDYGQLRLVQQLCEKYQVEILSQGF-QANIHLILGISE 179
Query: 178 ENLQAF 183
+ ++AF
Sbjct: 180 KTIEAF 185
>ref|NP_246436.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03581.1| (AE006186) unknown [Pasteurella multocida]
Length = 202
Score = 87.0 bits (214), Expect = 1e-16
Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 15/191 (7%)
Query: 2 KTLKNLITSKHQTKASRFLGYLMPFDDFEKTLL---QLKKEHFKAAHFVTAFRYSLEGKI 58
K K+ + + + K SRF+ YL ++ + Q+K +H +A H A
Sbjct: 5 KIPKSAVIFEEEIKKSRFITYLQHVENLTQAKAFWQQIKSQHPQARHHCWATIAGAPNDS 64
Query: 59 TE-GFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAY---AKSA 114
+ GFSDDGEP G++G PMLS L+ + I V VRY+GG LLG GGL++AY + A
Sbjct: 65 QQFGFSDDGEPAGTAGKPMLSALQGSKIGEICAVVVRYYGGILLGTGGLVRAYGNGVQQA 124
Query: 115 LLCVENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEIS 174
L +E K V+ ++ H Y ++ALQ +K + + ++F ++ V E+
Sbjct: 125 LTLLETVVK-------VQRQSYKVHCDYSHINALQLLCEKQDVMIINQHFVDR-VAFELG 176
Query: 175 GTRENLQAFLQ 185
+ L AF Q
Sbjct: 177 IRDDKLTAFEQ 187
>ref|NP_275138.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||G81000 conserved hypothetical protein NMB2153 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF42461.1| (AE002563) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 203
Score = 86.7 bits (213), Expect = 1e-16
Identities = 57/164 (34%), Positives = 91/164 (54%), Gaps = 7/164 (4%)
Query: 2 KTLKNLITSKHQTKASRFLGYLMPFD---DFEKTLLQLKKEHFKAAHFVTAFRYSLEGKI 58
KT+ +L ++ + K SRF+ + P D +K L LK+EH KA H+ A+R ++G +
Sbjct: 6 KTITSLTQAEFKDKGSRFIAFAYPIRTLADVKKYLDPLKEEHHKARHWCYAYRLGVDG-V 64
Query: 59 TEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKS---AL 115
+DDGEP GS+G P+L + + ++ +V VRYFGGTLLGV GL+ AY ++ AL
Sbjct: 65 QFRANDDGEPSGSAGRPILGQIDSVGITDVLVVVVRYFGGTLLGVPGLIHAYKEATAQAL 124
Query: 116 LCVENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQL 159
E +K +++ E + + + Q +I + LQL
Sbjct: 125 AVAEVVEKNIEKTVWLKCEYPFLNEAIRIAKQYQADILERDLQL 168
>ref|NP_615743.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04223.1| (AE010740) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 200
Score = 85.1 bits (209), Expect = 4e-16
Identities = 56/196 (28%), Positives = 95/196 (47%), Gaps = 20/196 (10%)
Query: 2 KTLKNLITSKHQTKASRFLGYLMPFDDFEKT---LLQLKKEHFKAAHFVTAFRYSLEGKI 58
KT+++ ++ + K S F+GY ++ + + ++K+ H A H V+A+
Sbjct: 5 KTMRSSGRARREFKNSIFIGYARHVENENEAKAFIKEIKELHADANHNVSAYIVKEGSSF 64
Query: 59 TEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCV 118
+ D+GEP GSSG P+ VL + L N +V RYFGG LG GGL +AY ++A+ +
Sbjct: 65 ALRYDDNGEPAGSSGKPVFKVLESKGLYNAAVVVTRYFGGIKLGFGGLSRAYRETAISAI 124
Query: 119 ENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFS-------------LQLSKKNFS 165
E A + ++ L + Y E+ L+ I+K+ + L KK+F
Sbjct: 125 EEAGTVEVFEEV----RLRMRFGYPEIQKLKNLIEKYGRVEEEKYSDAVEFIFLVKKSFE 180
Query: 166 NQSVEVEISGTRENLQ 181
Q +E TR ++
Sbjct: 181 EQFLEKLAKLTRNEVE 196
>ref|NP_326107.1| (NC_002771) PROLINE DIPEPTIDASE PEPQ [Mycoplasma pulmonis]
emb|CAC13449.1| (AL445563) PROLINE DIPEPTIDASE PEPQ [Mycoplasma pulmonis]
Length = 120
Score = 84.7 bits (208), Expect = 5e-16
Identities = 43/112 (38%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 12 HQTKASRFLGYLMPFDD---FEKTLLQLKKEHFKAAHFVTAFRY-SLEGKITEGFSDDGE 67
++ K S+F + + K + LKK+H KA+H +AF + +G + G+SDD E
Sbjct: 4 YEIKKSKFYSKVFEINSKAQVSKIIEDLKKQHKKASHICSAFVFRDDQGFLNSGYSDDKE 63
Query: 68 PKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVE 119
PKGS+G+P+ +++ + +L N+ +VS+RYFGG LG G LM+AY S + +E
Sbjct: 64 PKGSAGLPLWNLISKHNLSNVLIVSIRYFGGVKLGKGPLMRAYLNSGKIALE 115
>ref|NP_283080.1| (NC_003116) hypothetical protein NMA0240 [Neisseria meningitidis
Z2491]
pir||D82018 hypothetical protein NMA0240 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB83548.1| (AL162752) hypothetical protein NMA0240 [Neisseria meningitidis
Z2491]
Length = 203
Score = 84.0 bits (206), Expect = 8e-16
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 2 KTLKNLITSKHQTKASRFLGYLMPFD---DFEKTLLQLKKEHFKAAHFVTAFRYSLEGKI 58
KT+ + ++ + K SRF+ + P D +K L LK+EH KA H+ A+R ++G
Sbjct: 6 KTITSSTQAEFKDKGSRFIAFAYPIRTLADVKKYLDPLKEEHHKARHWCYAYRLGVDGMQ 65
Query: 59 TEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKS---AL 115
+DDGEP GS+G P+L + + ++ +V VRYFGGTLLGV GL+ AY ++ AL
Sbjct: 66 FRA-NDDGEPSGSAGRPILGQIDSVGITDVLVVVVRYFGGTLLGVPGLIHAYKEATAQAL 124
Query: 116 LCVENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQL 159
E +K +++ E + + + Q +I + LQL
Sbjct: 125 AVAEVVEKNIEKTVWLKCEYPFLNEAIRIAKQYQADILERDLQL 168
>pir||T44352 hypothetical protein [imported] - Clostridium histolyticum
dbj|BAA34258.1| (AB014075) Orf3u [Clostridium histolyticum]
Length = 216
Score = 81.6 bits (200), Expect = 4e-15
Identities = 50/168 (29%), Positives = 95/168 (55%), Gaps = 8/168 (4%)
Query: 3 TLKNLITSKHQTKASRFLGYLMPFDDFEKT---LLQLKKEHFKAAHFVTAFRYSLEGKIT 59
T+K+ S+ Q K S F+G++ + E+ + ++K+++ A H V A+ E
Sbjct: 5 TIKSKANSEFQEKKSIFIGHVKRVNSEEEAKQFIEEIKEKYKDARHNVYAYIIG-ENMGI 63
Query: 60 EGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVE 119
+ +SDDGEPKG+ G+P+L V+++ ++ + +V RYFGG LLG GL +AY+K+A+
Sbjct: 64 QRYSDDGEPKGTGGIPILEVIKKNNITDTVVVVTRYFGGILLGASGLTRAYSKAAV---- 119
Query: 120 NAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQ 167
NA KE + + + ++ Y+ L +Q + ++ + +S++
Sbjct: 120 NAIKEAGVVEKIIGAKVNIDVEYELLGKIQYTFSQKNIYIEDIQYSDK 167
>ref|NP_384571.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC41902.1| (AL591783) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 194
Score = 81.3 bits (199), Expect = 5e-15
Identities = 52/148 (35%), Positives = 80/148 (53%), Gaps = 15/148 (10%)
Query: 1 MKTLKNLITSKHQTKASRFLGYLMPFDD--FEKTLLQLKKEHFKAAHFVTAFRYSLEGKI 58
M TL+ + TS + K SRFL P +D KT + + + A H A+R +
Sbjct: 1 MFTLQRIETSAQEIKKSRFLAIAGPIEDELSAKTFIAARSDP-AANHNCWAWRAGQSYR- 58
Query: 59 TEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCV 118
FSDDGEP G++G P+L+ + + L + +V R+FGG LLG GGL++AY +A LC+
Sbjct: 59 ---FSDDGEPSGTAGKPILAAIDGQSLDRVAVVVTRWFGGVLLGSGGLVRAYGGTAALCL 115
Query: 119 ENAQKEDALK--------DFVELETLSA 138
A+K + ++ DF +L + A
Sbjct: 116 RAAEKIELIERQRAEIACDFADLALIKA 143
>ref|NP_348912.1| (NC_003030) Uncharacterized protein, YigZ family [Clostridium
acetobutylicum]
gb|AAK80252.1|AE007730_7 (AE007730) Uncharacterized protein, YigZ family [Clostridium
acetobutylicum]
Length = 214
Score = 81.3 bits (199), Expect = 5e-15
Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 8/168 (4%)
Query: 3 TLKNLITSKHQTKASRFLGYLMPFDDFEKT---LLQLKKEHFKAAHFVTAFRYSLEGKIT 59
T+ I + + K S F+G++ + E+ + ++K EH A H V A+ E ++
Sbjct: 5 TVGREIKVEFEEKKSLFIGHIKRVESEEEAKEFVEKIKNEHKDATHNVPAYIVG-ENRMI 63
Query: 60 EGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVE 119
+ SD+GEP+G++G+P+L V+++ + + +V RYFGG LLG GGL++AY++SA
Sbjct: 64 QKCSDNGEPQGTAGVPVLEVIKKNGITDTAIVVTRYFGGILLGTGGLVRAYSRSA----S 119
Query: 120 NAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQ 167
+A KE + V+ LS +Y L LQ + + +++++
Sbjct: 120 DAVKEAGIVLKVKGVPLSIGINYDLLGKLQYHFSNKNWHIENIDYTDE 167
>ref|NP_466039.1| (NC_003210) similar to conserved hypothetical proteins [Listeria
monocytogenes EGD-e]
emb|CAD00594.1| (AL591983) similar to conserved hypothetical proteins [Listeria
monocytogenes]
Length = 211
Score = 80.1 bits (196), Expect = 1e-14
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 6/149 (4%)
Query: 35 QLKKEHFKAAHFVTAFRYSLEGKITEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVR 94
++KKEH A H +A+ E + DDGEP G++G PML +L+++ L N+ +V R
Sbjct: 42 EIKKEHRDATHNCSAYIIG-ENDQYQKAHDDGEPSGTAGFPMLEILKKKSLKNVAVVVTR 100
Query: 95 YFGGTLLGVGGLMKAYAKSALLCVENAQKEDALKDFVELETLSAHYSYKELDALQREIKK 154
YFGGT LG GGL++AY + V A + + + + ++Y L ++ ++
Sbjct: 101 YFGGTKLGAGGLVRAYGSA----VSEAIQAIGIVECKLATIVECSFAYPLLGKVENALEL 156
Query: 155 FSLQLSKKNFSNQSVEVEISGTRENLQAF 183
+ Q+ KK F+ + V + I + LQ F
Sbjct: 157 KAYQIDKKEFT-EKVVLHIFVDNDELQDF 184
>ref|NP_371272.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_373958.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
ref|NP_645527.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB41936.1| (AP003131) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB56910.1| (AP003360) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB62082.1| (AB002692) homologous to degORFL in Bacillus subtilis~llmORF2
[Staphylococcus aureus]
dbj|BAB94575.1| (AP004824) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 213
Score = 79.0 bits (193), Expect = 3e-14
Identities = 55/192 (28%), Positives = 98/192 (50%), Gaps = 21/192 (10%)
Query: 5 KNLITSKHQ------TKASRFLGYLMPF---DDFEKTLLQLKKEHFKAAHFVTAFRYSLE 55
+N+IT K + SRF+ ++ P D+ + + +KKEH A H +A+ E
Sbjct: 3 QNIITVKKEHIIENVISKSRFIAHIKPVQNEDEAKAFIAAIKKEHKDATHNCSAYTIGPE 62
Query: 56 GKITEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYA---K 112
I + +DDGEP G++G+PML +L++ D+ N +V RYFGG LG GGL++AY+ +
Sbjct: 63 MNIQKA-NDDGEPTGTAGVPMLDILKKLDVHNACVVVTRYFGGIKLGGGGLIRAYSGAVR 121
Query: 113 SALLCVENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVE 172
+ V + +A+ V L +Y + + E+ L + ++++ V
Sbjct: 122 DVIYDVGRVELREAVPCIVTL-------NYDQTGKFEYELASTHFMLRNQTYTDK-VSYY 173
Query: 173 ISGTRENLQAFL 184
I + + +AF+
Sbjct: 174 IDVVKSDYEAFI 185
>ref|NP_269669.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
ref|NP_607679.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAK34390.1| (AE006593) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
gb|AAL98178.1| (AE010075) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 210
Score = 77.8 bits (190), Expect = 6e-14
Identities = 45/121 (37%), Positives = 69/121 (56%), Gaps = 4/121 (3%)
Query: 2 KTLKNLITSKHQTKASRFLGYLMPF---DDFEKTLLQLKKEHFKAAHFVTAFRYSLEGKI 58
KT+K + K SRF+ ++ +D + + +KKEH+KA H A +I
Sbjct: 5 KTIKASGFFEESIKKSRFICHIKRVSTEEDGKNFVNAIKKEHYKANHSCFAMIIGNNRQI 64
Query: 59 TEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCV 118
SDDGEP G++G+P+LSVL ++ L N+ +V RYFGG LG GGL++AY+ +
Sbjct: 65 KRS-SDDGEPSGTAGIPILSVLEKQCLTNVVVVVTRYFGGIKLGTGGLIRAYSNMTATAI 123
Query: 119 E 119
+
Sbjct: 124 K 124
>ref|NP_471989.1| (NC_003212) similar to conserved hypothetical proteins [Listeria
innocua]
emb|CAC97886.1| (AL596173) similar to conserved hypothetical proteins [Listeria
innocua]
Length = 211
Score = 77.8 bits (190), Expect = 6e-14
Identities = 53/178 (29%), Positives = 97/178 (53%), Gaps = 11/178 (6%)
Query: 11 KHQT--KASRFLGYL--MPFDDFEKTLLQ-LKKEHFKAAHFVTAFRYSLEGKITEGFSDD 65
KH+ + SRF+ ++ + + +T +Q +KKEH A H +A+ + + DD
Sbjct: 13 KHEIIIEKSRFICHIKRIKTESEAQTFIQTIKKEHRDATHNCSAYIIGENDQFQKAH-DD 71
Query: 66 GEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENAQKED 125
GEP G++G+PML VL+++ L N+ +V RYFGGT LG GGL++AY + V A +
Sbjct: 72 GEPSGTAGVPMLEVLKKKALKNVVVVVTRYFGGTKLGAGGLVRAYGGA----VSEAIQTI 127
Query: 126 ALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENLQAF 183
+ + + ++Y L ++ +++ + Q+ K F+ + V +++ E+L F
Sbjct: 128 GIIECKLATIIECSFAYPLLGKIENALEQKNYQIVHKEFT-EKVVLQVFVDNEDLSTF 184
>ref|NP_541398.1| (NC_003318) THYMIDYLATE SYNTHASE [Brucella melitensis]
gb|AAL53662.1| (AE009679) proline dipeptidase PepQ [Brucella melitensis]
Length = 205
Score = 76.3 bits (186), Expect = 2e-13
Identities = 47/129 (36%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 1 MKTLKNLITSKHQTKASRFLGYLMPF--DDFEKTLLQLKKEHFKAAHFVTAFRYSLEGKI 58
M T+ + T + K SRFL P ++ K L + A H A+R +
Sbjct: 11 MFTISRVETFSQEIKKSRFLAIAAPVASEEAAKDFLH-EYSDLSATHNCWAWRMGQNYR- 68
Query: 59 TEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCV 118
FSDDGEP G++G P+L + + L NI +V R+FGG LLG GGLM+AY +A C+
Sbjct: 69 ---FSDDGEPSGTAGKPILQAIDGQQLDNIVVVVTRWFGGILLGSGGLMRAYGGTAASCL 125
Query: 119 ENAQKEDAL 127
A+K + +
Sbjct: 126 RQAEKTEVI 134
>ref|NP_244497.1| (NC_002570) BH3630~unknown conserved protein [Bacillus halodurans]
dbj|BAB07349.1| (AP001519) BH3630~unknown conserved protein [Bacillus halodurans]
Length = 213
Score = 75.9 bits (185), Expect = 2e-13
Identities = 51/165 (30%), Positives = 86/165 (51%), Gaps = 18/165 (10%)
Query: 17 SRFLGYLMPFDDFEKTLL---QLKKEHFKAAHFVTAFRYSLEGKITEGFSDDGEPKGSSG 73
SRF+ +L E+ + Q+KKEH+ A H +A+ ++ + +DDGEP G++G
Sbjct: 21 SRFIAHLSRATSEEEAIQFIEQIKKEHWNATHNCSAYLIGENDQVQKA-NDDGEPSGTAG 79
Query: 74 MPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAK------SALLCVENAQKEDAL 127
+PML VL++ L + V RYFGG LG GGL++AY +A+ VE + +
Sbjct: 80 VPMLEVLKKRRLKDTVAVVTRYFGGVKLGAGGLIRAYGSAVSDGLNAIGVVERKRMQVIH 139
Query: 128 KDF-------VELETLSAHYSYKELDALQR-EIKKFSLQLSKKNF 164
VE E +HY KE+ L+ +++ + L+ +++
Sbjct: 140 TSIDYHWLGKVENELRQSHYLLKEISYLENVDVQTYVLEAEVESY 184
>ref|NP_562871.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81661.1| (AP003192) conserved hypothetical protein [Clostridium perfringens]
Length = 217
Score = 75.5 bits (184), Expect = 3e-13
Identities = 39/122 (31%), Positives = 71/122 (57%), Gaps = 4/122 (3%)
Query: 3 TLKNLITSKHQTKASRFLGYLMPF---DDFEKTLLQLKKEHFKAAHFVTAFRYSLEGKIT 59
T+K + + K S F+GY+ ++ ++ + ++ +H A H A+ I
Sbjct: 5 TVKKAADDRFEEKKSVFIGYVKRVTTEEEAKEFVAEINNKHKDARHNCYAYVIGQNMGI- 63
Query: 60 EGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVE 119
+ +SD+GEP+G++G+P+L V++++ + + +V RYFGG LLG GGL +AY K A + +
Sbjct: 64 QRYSDNGEPQGTAGIPILEVIKKQGITDCAVVVTRYFGGILLGTGGLTRAYTKGAAIAIS 123
Query: 120 NA 121
A
Sbjct: 124 AA 125
>ref|NP_521396.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD17065.1| (AL646074) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 195
Score = 75.5 bits (184), Expect = 3e-13
Identities = 46/128 (35%), Positives = 69/128 (52%), Gaps = 7/128 (5%)
Query: 3 TLKNLITSKHQTKASRFLGYLMPFDDFEKTL---LQLKKEHFKAAHFVTAFRYSLEGKIT 59
TL+ + ++ + + SRF+G +P +D + +L+ EH A H A L G
Sbjct: 5 TLRAPVRAELEIRKSRFIGLAVPVEDRAAAMDVIARLRAEHPAATHVCWAL---LAGG-Q 60
Query: 60 EGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVE 119
G SDDGEP G++G P+L VLR DL VRYFGG LG GGL++AY + +
Sbjct: 61 SGMSDDGEPSGTAGRPILEVLRHHDLDGTLGAVVRYFGGVKLGAGGLVRAYTDAIATALM 120
Query: 120 NAQKEDAL 127
A++ + +
Sbjct: 121 GAERVERI 128
>ref|NP_601326.1| (NC_003450) COG1739:Uncharacterized ACR [Corynebacterium
glutamicum]
dbj|BAB99518.1| (AP005280) Uncharacterized ACR [Corynebacterium glutamicum ATCC
13032]
Length = 217
Score = 74.7 bits (182), Expect = 5e-13
Identities = 43/105 (40%), Positives = 60/105 (56%), Gaps = 4/105 (3%)
Query: 13 QTKASRFLGYLMPFDDFEKT---LLQLKKEHFKAAHFVTAFRYSLEGKI-TEGFSDDGEP 68
+ K SRFL Y+ D E+ + +K+ + A H +AF + ++G E SDDGEP
Sbjct: 21 EIKRSRFLTYITRVQDQEQAREFIHSIKELYPDARHHCSAFIFHVDGSNDVERSSDDGEP 80
Query: 69 KGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKS 113
G++G PML LR + +I V VRYFGG LG GGL+ AY +
Sbjct: 81 SGTAGKPMLEALRGSGMKDIAAVVVRYFGGVKLGTGGLVNAYTNA 125
>ref|NP_391431.1| (NC_000964) alternate gene name: yvhK~similar to hypothetical
proteins [Bacillus subtilis]
sp|P32437|YVYE_BACSU Hypothetical protein yvyE
pir||A70049 conserved hypothetical protein yvyE - Bacillus subtilis
gb|AAC44936.1| (U56901) Ycr59c/YigZ homolog [Bacillus subtilis]
emb|CAB15568.1| (Z99122) alternate gene name: yvhK~similar to hypothetical proteins
[Bacillus subtilis]
Length = 217
Score = 74.3 bits (181), Expect = 7e-13
Identities = 50/170 (29%), Positives = 87/170 (50%), Gaps = 9/170 (5%)
Query: 17 SRFLGYLMPFD---DFEKTLLQLKKEHFKAAHFVTAFRYSLEGKITEGFSDDGEPKGSSG 73
SRF+ +L + ++ + ++KK+H+ A H +A+ I + +DDGEP G++G
Sbjct: 21 SRFICHLSRVSTEQEAQEFIQKIKKQHWNATHNCSAYVIGENDHIQKA-NDDGEPSGTAG 79
Query: 74 MPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENAQKEDALKDFVEL 133
+PML VL++ L + V RYFGG LG GGL++AY KS V + + +
Sbjct: 80 VPMLEVLKKRRLKDTCAVVTRYFGGIKLGAGGLIRAYGKS----VSEGLNHIGVVERKLM 135
Query: 134 ETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENLQAF 183
+ Y L ++ E+++ L + ++S ++VE E + AF
Sbjct: 136 RIMHTSADYTWLGKIENELRESQFLLKEIHYS-ENVEFETYVEEKETNAF 184
>ref|NP_444238.1| (NC_002607) Uncharacterized conserved protein [Halobacterium sp.
NRC-1]
Length = 206
Score = 73.9 bits (180), Expect = 9e-13
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 10/130 (7%)
Query: 2 KTLKNLITSKHQTKASRFLGYLMPFDDF---EKTLLQLKKEHFKAAHFVTAFRYSLEGK- 57
+TL + + S F+GY P + E + ++++ H A H V +R + G
Sbjct: 6 RTLAGSGRDSFEVRGSEFIGYAGPANTVAAAEAFIQEVRERHADATHNVPWYRVRVTGGG 65
Query: 58 ------ITEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYA 111
+ E SDDGEP GS+G P L+V+++ D+ N+ V RY+GGT LGVGGL +AY+
Sbjct: 66 PGGGHLLREYQSDDGEPTGSAGKPALNVVQQRDVENVVGVVTRYYGGTNLGVGGLARAYS 125
Query: 112 KSALLCVENA 121
+ V+ A
Sbjct: 126 TAVKDAVDAA 135
>ref|NP_078096.1| (NC_002162) conserved hypothetical [Ureaplasma urealyticum]
pir||H82912 conserved hypothetical UU262 [imported] - Ureaplasma urealyticum
gb|AAF30671.1|AE002123_4 (AE002123) conserved hypothetical [Ureaplasma urealyticum]
Length = 195
Score = 73.6 bits (179), Expect = 1e-12
Identities = 44/148 (29%), Positives = 80/148 (53%), Gaps = 16/148 (10%)
Query: 15 KASRFLGYLMPFDD---FEKTLLQLKKEHFKAAHFVTAFRYSLEGKITEGFSDDGEPKGS 71
K S+F+ + P D + + K++++ A H A+ E + + DDGEP G+
Sbjct: 17 KKSKFITIVEPISDKNEVQSLFKKYKEQYYDATHICFAYVIGREFNYMKAY-DDGEPNGT 75
Query: 72 SGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENAQKEDALKDFV 131
+G+P+L++++ + L N+ + VRYFGG LG GGL++AY++ A ++N
Sbjct: 76 AGIPILNIIKIKSLTNVIIFVVRYFGGIKLGTGGLIRAYSQCAKEIIDNC---------- 125
Query: 132 ELETLSAHYSYKELDALQREIKKFSLQL 159
E+ L ++ YK + L+ KF+ Q+
Sbjct: 126 EIIILQKYFYYKVVYKLKN--TKFAKQI 151
>ref|NP_457767.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD07908.1| (AL627278) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 204
Score = 72.4 bits (176), Expect = 3e-12
Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 9/180 (5%)
Query: 8 ITSKHQTKASRFLGYLMPFDDFE--KTLLQL-KKEHFKAAHFVTAFRYSLEGKITE-GFS 63
+T + K SRF+ L D E K ++L + EH A H A+ + GFS
Sbjct: 11 VTVVEEIKKSRFITLLAHTDGVEAAKAFVELVRAEHPDARHHCAAWVAGAPDDSQQLGFS 70
Query: 64 DDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENAQK 123
DDGEP G++G PML+ L + I V VRY+GG LLG GGL+KAY V A +
Sbjct: 71 DDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGG----VNQALR 126
Query: 124 EDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENLQAF 183
+ A + L + Y +L ++ + +F+ ++ ++ SV + ++ ++ AF
Sbjct: 127 QLATQRKTPLTEYTLQCEYGQLAGIEALLGQFAGKIVSSDY-QASVRLRVALPFAHVNAF 185
>ref|NP_653644.1| (NC_003995) UPF0029, Uncharacterized protein family UPF0029
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 211
Score = 72.4 bits (176), Expect = 3e-12
Identities = 45/149 (30%), Positives = 82/149 (54%), Gaps = 17/149 (11%)
Query: 17 SRFLGYLMPF---DDFEKTLLQLKKEHFKAAHFVTAFRYSLEGKITEGFSDDGEPKGSSG 73
SRF+ Y+ ++ ++ + ++KK+++ A H +A+ + +I + +DDGEP G++G
Sbjct: 21 SRFICYVSRATTEEEAQEFIQKIKKQNWNATHNCSAYLIGEQDQIQKA-NDDGEPSGTAG 79
Query: 74 MPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSA-------------LLCVEN 120
+PML VL++ L + +V RYFGG LG GGL++AY K L+ V
Sbjct: 80 VPMLEVLKKRGLKDTVVVVTRYFGGIKLGAGGLIRAYGKCTSEGINHVGVVERKLMRVMQ 139
Query: 121 AQKEDALKDFVELETLSAHYSYKELDALQ 149
+ + L +E E ++ Y+ K++ L+
Sbjct: 140 TEIDYTLLGKIENELRNSKYAIKDIHYLE 168
>pir||A30191 hypothetical protein L - Bacillus subtilis (fragment)
Length = 171
Score = 71.2 bits (173), Expect = 6e-12
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 4/100 (4%)
Query: 17 SRFLGYLMPFD---DFEKTLLQLKKEHFKAAHFVTAFRYSLEGKITEGFSDDGEPKGSSG 73
SRF+ +L + ++ + ++KK+H+ A H +A+ I + +DDGEP G++G
Sbjct: 21 SRFICHLSRVSTEQEAQEFIQKIKKQHWNATHNCSAYVIGENDHIQKA-NDDGEPSGTAG 79
Query: 74 MPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKS 113
+PML VL++ L + V RYFGG LG GGL++AY KS
Sbjct: 80 VPMLEVLKKRRLKDTCAVVTRYFGGIKLGAGGLIRAYGKS 119
>ref|NP_625588.1| (NC_003888) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
emb|CAC42849.1| (AL592292) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
Length = 208
Score = 69.3 bits (168), Expect = 2e-11
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 12 HQTKA--SRFLGYLMPF---DDFEKTLLQLKKEHFKAAHFVTAFRYSLEGKITEGFSDDG 66
H+T+ SRFL L P D + + ++KEH A H A+ + + + SDDG
Sbjct: 14 HETEINRSRFLCSLAPAATEQDAQAFVAGVRKEHADATHNCWAYVIGADAGVQKA-SDDG 72
Query: 67 EPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAY 110
EP G++G+PML +L R D+ + V RY+GG LG GGL++AY
Sbjct: 73 EPGGTAGVPMLQMLLRRDMRYVVAVVTRYYGGVKLGAGGLIRAY 116
>ref|NP_462870.1| (NC_003197) putative cytoplasmic protein [Salmonella typhimurium
LT2]
gb|AAF33413.1| (AF233324) 91% identity with E. coli hypothetical protein yigZ
(SW:P27863); contains similarity to Pfam family PF01205
(Uncharacterized protein family UPF0029), score=323.0,
E=3.4e-93, N=1 [Salmonella typhimurium LT2]
gb|AAL22829.1| (AE008886) putative cytoplasmic protein [Salmonella typhimurium
LT2]
Length = 204
Score = 68.9 bits (167), Expect = 3e-11
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 9/180 (5%)
Query: 8 ITSKHQTKASRFLGYLMPFD--DFEKTLLQ-LKKEHFKAAHFVTAFRYSLEGKITE-GFS 63
+T + K SRF+ L D D K ++ ++ EH A H A+ + GFS
Sbjct: 11 VTVVEEIKKSRFITLLAHTDGVDAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFS 70
Query: 64 DDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENAQK 123
DDGEP G++G PML+ L + I V VRY+ G LLG GGL+KAY V A +
Sbjct: 71 DDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYSGILLGTGGLVKAYGGG----VNQALR 126
Query: 124 EDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENLQAF 183
+ A + L + Y +L ++ + +F+ ++ ++ SV + ++ ++ AF
Sbjct: 127 QLATQRKTPLTEYTLQCEYGQLAGIEALLGQFAGKIVSSDY-QASVRLRVALPFAHVNAF 185
>sp|P27862|YIGZ_ECOLI Hypothetical protein yigZ
Length = 204
Score = 68.6 bits (166), Expect = 4e-11
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 8 ITSKHQTKASRFLGYLMPFDDFEKT---LLQLKKEHFKAAHFVTAFRYSLEGKITE-GFS 63
+T + K SRF+ L D E + ++ EH A H A+ + GFS
Sbjct: 11 VTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFS 70
Query: 64 DDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAY 110
DDGEP G++G PML+ L + I V VRY+GG LLG GGL+KAY
Sbjct: 71 DDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAY 117
>emb|CAA38501.1| (X54687) pepQ product, proline dipeptidase [Escherichia coli]
Length = 646
Score = 68.6 bits (166), Expect = 4e-11
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 8 ITSKHQTKASRFLGYLMPFDDFEKT---LLQLKKEHFKAAHFVTAFRYSLEGKITE-GFS 63
+T + K SRF+ L D E + ++ EH A H A+ + GFS
Sbjct: 453 VTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFS 512
Query: 64 DDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAY 110
DDGEP G++G PML+ L + I V VRY+GG LLG GGL+KAY
Sbjct: 513 DDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAY 559
>ref|NP_232383.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||H82037 conserved hypothetical protein VC2757 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF95896.1| (AE004341) conserved hypothetical protein [Vibrio cholerae]
Length = 210
Score = 68.6 bits (166), Expect = 4e-11
Identities = 57/181 (31%), Positives = 84/181 (45%), Gaps = 13/181 (7%)
Query: 11 KHQTKASRFLGYLMPFDDFEKTLL---QLKKEHFKAAHFVTAFRYSL-EGKITEGFSDDG 66
+ + K S F+ YL D ++K+ H A H AF E + G SDDG
Sbjct: 16 EEEIKKSLFITYLAHTPDLASAKAFVDEIKQRHADARHNCWAFVAGRPENSMLWGLSDDG 75
Query: 67 EPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENAQKEDA 126
EP G++G P+L+ L + I V RY+GG LLG GGL+KAY V+ A K
Sbjct: 76 EPSGTAGKPILAQLTGSHIGEITAVVTRYYGGVLLGTGGLVKAYGGG----VQQALKR-- 129
Query: 127 LKDFVELETLSAHYS--YKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENLQAFL 184
L+ + T S H + Y + L + +FS + ++ N+ VE+ + AF
Sbjct: 130 LQTIEKKITTSVHLTLDYAMIPLLHSIMAQFSATEMEAHY-NEQVEMVVELEALQSDAFT 188
Query: 185 Q 185
Q
Sbjct: 189 Q 189
>ref|NP_418290.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
pir||S30739 hypothetical protein (pepQ 5' region) - Escherichia coli
gb|AAA67645.1| (M87049) similar to product of an uncharacterized ORF of B.
subtilis [Escherichia coli]
gb|AAC76851.1| (AE000460) orf, hypothetical protein [Escherichia coli K12]
Length = 205
Score = 68.6 bits (166), Expect = 4e-11
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 8 ITSKHQTKASRFLGYLMPFDDFEKT---LLQLKKEHFKAAHFVTAFRYSLEGKITE-GFS 63
+T + K SRF+ L D E + ++ EH A H A+ + GFS
Sbjct: 12 VTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFS 71
Query: 64 DDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAY 110
DDGEP G++G PML+ L + I V VRY+GG LLG GGL+KAY
Sbjct: 72 DDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAY 118
>ref|NP_290478.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_312803.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG59042.1|AE005615_10 (AE005615) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB38199.1| (AP002567) hypothetical protein [Escherichia coli O157:H7]
Length = 205
Score = 68.6 bits (166), Expect = 4e-11
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 8 ITSKHQTKASRFLGYLMPFDDFEKT---LLQLKKEHFKAAHFVTAFRYSLEGKITE-GFS 63
+T + K SRF+ L D E + ++ EH A H A+ + GFS
Sbjct: 12 VTVVEEIKKSRFITLLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFS 71
Query: 64 DDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAY 110
DDGEP G++G PML+ L + I V VRY+GG LLG GGL+KAY
Sbjct: 72 DDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAY 118
>ref|NP_295925.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||B75303 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF11752.1|AE002053_7 (AE002053) conserved hypothetical protein [Deinococcus radiodurans]
Length = 203
Score = 68.2 bits (165), Expect = 5e-11
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 11/170 (6%)
Query: 17 SRFLGYLMPFDDFEKTLLQL---KKEHFKAAHFVTAFRYSLEGKITEGFSDDGEPKGSSG 73
S FL + D E+ L L + + A H A+R + F DDGEP G++G
Sbjct: 24 SEFLAFAERADSPEEALAHLAALRTRYPDATHHCWAYRIGAAYR----FGDDGEPGGTAG 79
Query: 74 MPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENAQKEDALKDFVEL 133
P+L + + + ++ +V VRY+GG LG GGL++AY A C+ A + D
Sbjct: 80 APILRAIEGQGVDHVMVVVVRYYGGVKLGTGGLVRAYGGVAAECLRTAPRLDVR----PR 135
Query: 134 ETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENLQAF 183
TL + L L + + ++ ++ V + + E+++AF
Sbjct: 136 RTLQVSVPFDHLSGLYHLLGTWDAARGEETYTGAGVTLPVEVYPEDVEAF 185
>ref|NP_356601.1| (NC_003063) AGR_L_1623p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_534527.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK89386.1| (AE008280) AGR_L_1623p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL44843.1| (AE009334) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 158
Score = 66.2 bits (160), Expect = 2e-10
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 59 TEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCV 118
T FSDDGEP G++G P+L + + L N+ ++ +R+FGG LLG GGLM+AY +A C+
Sbjct: 19 TYRFSDDGEPSGTAGKPILQAIDGQALDNVAVLVIRWFGGILLGSGGLMRAYGGTAAACL 78
Query: 119 ENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRE 178
+ + +V TLS +S L R +L+L ++ F+ ++ +S E
Sbjct: 79 RLGETSPVIA-YVS-ATLSCPFSDLAL-VKSRLSATPNLRLEREEFTGTGADMLLSVPAE 135
Query: 179 NLQ 181
+
Sbjct: 136 EAE 138
>ref|NP_248858.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||F83625 conserved hypothetical protein PA0168 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG03558.1|AE004454_10 (AE004454) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 196
Score = 66.2 bits (160), Expect = 2e-10
Identities = 39/127 (30%), Positives = 65/127 (50%), Gaps = 5/127 (3%)
Query: 3 TLKNLITSKHQTKASRFLGYLMPF-DDFEKTLLQLKKEHFKAAHFVTAFRYSLEGKITEG 61
TL+ L + + + SRF P D+ E A H A++ + +
Sbjct: 4 TLQGLAEYREEIRKSRFHTIAAPVADEDEAQAFIAAHRDASAGHNCWAWKCGAQYR---- 59
Query: 62 FSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENA 121
FSDDGEP GS+G P+L+ + +D+ + ++ R+FGG LG GGL +AY A C++ A
Sbjct: 60 FSDDGEPGGSAGRPILAAIEGQDMDCVAVLVSRWFGGIKLGTGGLARAYGGGAAKCLQQA 119
Query: 122 QKEDALK 128
+ + ++
Sbjct: 120 PRSELVE 126
>ref|NP_636855.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM40779.1| (AE012249) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 200
Score = 66.2 bits (160), Expect = 2e-10
Identities = 43/169 (25%), Positives = 78/169 (45%), Gaps = 9/169 (5%)
Query: 13 QTKASRFLGYLMPFDDFEKTLLQLKK-EHFKAAHFVTAFRYSLEGKITEGFSDDGEPKGS 71
+ K SRF+ E+ L Q+++ A H A+RY E + SDDGEP G+
Sbjct: 17 EIKHSRFVAQACALASPEQALEQVRRFAAVDATHNCWAYRYGQEYRS----SDDGEPSGT 72
Query: 72 SGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENAQKEDALKDFV 131
+G P+L+ + + + +V R++GG LG GGL++AY +A C+ A + + V
Sbjct: 73 AGRPILAAIDGQGYDRVVVVVTRWYGGIKLGAGGLVRAYGGTAAECLRLAMR----RPLV 128
Query: 132 ELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENL 180
+ L+ + +L + + F + F + + + + L
Sbjct: 129 TMSLLALRCPFDDLGVVHAALSTFHADKLDEQFDTEGAALRVQVAADQL 177
>gb|AAK00330.1|AF320250_3 (AF320250) YvyE [Lactobacillus delbrueckii]
Length = 219
Score = 65.1 bits (157), Expect = 4e-10
Identities = 44/143 (30%), Positives = 69/143 (47%), Gaps = 8/143 (5%)
Query: 15 KASRFLGYLMPFDDFEKT---LLQLKKEHFKAAHFVTAFRYSLEGKITEGFSDDGEPKGS 71
K SRF+ L D E+ + K++ A H A+ + + SD+GEP G+
Sbjct: 21 KKSRFIATLARVQDEEEARDFIAATSKKYHDATHNTYAYTLGINDDRVKS-SDNGEPAGT 79
Query: 72 SGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENAQKEDALKDFV 131
+G+P L L+ L N+ +V RYFGG LG GGL++AY+ S V A + + V
Sbjct: 80 AGVPELKTLQLMGLKNVAVVVTRYFGGIKLGAGGLIRAYSSS----VSEAAEAIGIVKRV 135
Query: 132 ELETLSAHYSYKELDALQREIKK 154
+ + L Y D + +K+
Sbjct: 136 KQQELIFSIPYNRYDKVDHFLKE 158
>pir||T05636 hypothetical protein F20D10.210 - Arabidopsis thaliana
emb|CAB37549.1| (AL035538) putative protein [Arabidopsis thaliana]
emb|CAB80474.1| (AL161592) putative protein [Arabidopsis thaliana]
Length = 204
Score = 63.5 bits (153), Expect = 1e-09
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 3 TLKNLITSKHQTKASRFLGYLMPFDDFEKTLLQLKKEHF-KAAHFVTAFRYSLEGKITEG 61
TLK ++ + + K S+F+ P + + L + +A+H A++ G
Sbjct: 10 TLKETVSVEKEIKKSKFIAIAGPISSEQSAQMFLSQVRDPRASHNCWAYKI---GDHHHR 66
Query: 62 FSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENA 121
SDDGEP G++G P+ S + L + +V +RYFGG LG GGL++AY C++ A
Sbjct: 67 CSDDGEPSGTAGKPIQSAILSSGLDRVMVVVIRYFGGIKLGTGGLVRAYGGVTSDCLKTA 126
>ref|NP_568034.1| (NM_119970) putative protein [Arabidopsis thaliana]
Length = 234
Score = 63.5 bits (153), Expect = 1e-09
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 3 TLKNLITSKHQTKASRFLGYLMPFDDFEKTLLQLKKEHF-KAAHFVTAFRYSLEGKITEG 61
TLK ++ + + K S+F+ P + + L + +A+H A++ G
Sbjct: 40 TLKETVSVEKEIKKSKFIAIAGPISSEQSAQMFLSQVRDPRASHNCWAYKI---GDHHHR 96
Query: 62 FSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENA 121
SDDGEP G++G P+ S + L + +V +RYFGG LG GGL++AY C++ A
Sbjct: 97 CSDDGEPSGTAGKPIQSAILSSGLDRVMVVVIRYFGGIKLGTGGLVRAYGGVTSDCLKTA 156
>gb|AAM63017.1| (AY085801) unknown [Arabidopsis thaliana]
Length = 234
Score = 63.5 bits (153), Expect = 1e-09
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 3 TLKNLITSKHQTKASRFLGYLMPFDDFEKTLLQLKKEHF-KAAHFVTAFRYSLEGKITEG 61
TLK ++ + + K S+F+ P + + L + +A+H A++ G
Sbjct: 40 TLKETVSVEKEIKKSKFIAIAGPISSEQSAQMFLSQVRDPRASHNCWAYKI---GDHHHR 96
Query: 62 FSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENA 121
SDDGEP G++G P+ S + L + +V +RYFGG LG GGL++AY C++ A
Sbjct: 97 CSDDGEPSGTAGKPIQSAILSSGLDRVMVVVIRYFGGIKLGTGGLVRAYGGVTSDCLKTA 156
>sp|P32438|YPOL_THETH Hypothetical protein in pol 5'region
Length = 179
Score = 56.6 bits (135), Expect = 1e-07
Identities = 44/118 (37%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 17 SRFLGYLMPFDDFEKTLLQLKKEHF-KAAHFVTAFRYSLEGKITEGFSDDGEPKGSSGMP 75
SRFL P E+ L L +A H A+R G + FSDDGEP+ + G P
Sbjct: 5 SRFLAKAAPAASEEEALAFLAAHREPQATHNAYAYRI---GPLYR-FSDDGEPR-APGRP 59
Query: 76 MLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENAQKEDALKDFVEL 133
+L + L + ++ VRYFGG LG GGL++AY A + A K L D+VE+
Sbjct: 60 ILHAIEAAGLDRVVVLVVRYFGGVKLGAGGLVRAYGGVAAEALRRAPKAPLL-DWVEV 116
>ref|NP_641864.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM36400.1| (AE011785) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 197
Score = 56.6 bits (135), Expect = 1e-07
Identities = 32/131 (24%), Positives = 62/131 (46%), Gaps = 8/131 (6%)
Query: 43 AAHFVTAFRYSLEGKITEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLG 102
A H A+R+ + + SDDGEP G++G P+L+ + + + +V R++GG LG
Sbjct: 45 ATHNCWAYRFGQDYRS----SDDGEPSGTAGRPILAAIDGQGFDRVVVVVTRWYGGIKLG 100
Query: 103 VGGLMKAYAKSALLCVENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKK 162
GGL++AY +A C+ A ++ + L + + +L + + F +
Sbjct: 101 AGGLVRAYGGTAAECLRLATRQ----PLIALSRVQVQCRFDDLGLVHAALAAFHADKLDE 156
Query: 163 NFSNQSVEVEI 173
F + + +
Sbjct: 157 RFDAEGAALRV 167
>ref|NP_595912.1| (NC_003423) hypothetical protein [Schizosaccharomyces pombe]
pir||T39437 hypothetical protein SPBC14C8.09c - fission yeast
(Schizosaccharomyces pombe)
emb|CAA18427.1| (AL022305) hypothetical protein [Schizosaccharomyces pombe]
Length = 144
Score = 48.9 bits (115), Expect = 3e-05
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 15/104 (14%)
Query: 4 LKNLITSKHQTKASRFLGYLMPFDDFE-----KTLLQLKKEHFKAAHFVTAFRYSLEGKI 58
+ NLIT + T FL Y +P D + + + Q + H + A+R+ E
Sbjct: 30 MSNLITDREST----FLSYFVPSKDPKMLPVYRFMFQESADLKHCNHKMQAWRFPNE--- 82
Query: 59 TEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLG 102
E F+DDGE SG +L+VLR+ED+ + +V VR++GG LLG
Sbjct: 83 IEAFNDDGEEY--SGQKLLNVLRKEDVYGM-VVCVRWYGGQLLG 123
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.134 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,847,982
Number of Sequences: 1026957
Number of extensions: 4308207
Number of successful extensions: 12262
Number of sequences better than 1.0e-02: 53
Number of HSP's better than 0.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12188
Number of HSP's gapped (non-prelim): 53
length of query: 190
length of database: 324,149,939
effective HSP length: 114
effective length of query: 76
effective length of database: 207,076,841
effective search space: 15737839916
effective search space used: 15737839916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 94 (40.8 bits)