BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646097|ref|NP_208279.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(329 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208279.1| (NC_000915) conserved hypothetical secrete... 637 0.0
gb|AAB81283.1| (U86610) 36 kDa protein [Helicobacter pylori] 630 e-180
ref|NP_224099.1| (NC_000921) putative [Helicobacter pylori ... 625 e-178
ref|NP_231247.1| (NC_002505) conserved hypothetical protein... 305 6e-82
gb|AAD39494.1|AF145798_1 (AF145798) immunoreactive 36 kDa a... 225 5e-58
ref|NP_252092.1| (NC_002516) hypothetical protein [Pseudomo... 146 4e-34
gb|AAL46999.1|AF448250_3 (AF448250) putative HylD secretion... 96 4e-19
ref|NP_253919.1| (NC_002516) conserved hypothetical protein... 94 2e-18
ref|NP_355996.1| (NC_003063) AGR_L_433p [Agrobacterium tume... 93 4e-18
ref|NP_105427.1| (NC_002678) hypothetical protein [Mesorhiz... 91 2e-17
ref|NP_286558.1| (NC_002655) putative membrane protein [Esc... 89 7e-17
ref|NP_308900.1| (NC_002695) putative membrane protein [Esc... 89 9e-17
ref|NP_437413.1| (NC_003078) putative protein secretion pro... 88 2e-16
ref|NP_415316.1| (NC_000913) putative membrane protein [Esc... 87 3e-16
ref|NP_462488.1| (NC_003197) paral putative membrane protei... 86 6e-16
ref|NP_458335.1| (NC_003198) putative HlyD family secretion... 85 1e-15
ref|NP_312387.1| (NC_002695) putative membrane protein [Esc... 84 2e-15
ref|NP_290059.1| (NC_002655) putative membrane protein [Esc... 84 2e-15
ref|NP_455356.1| (NC_003198) HlyD-family secretion protein ... 83 5e-15
ref|NP_459796.1| (NC_003197) membrane permeases, predicted ... 83 5e-15
ref|NP_417944.1| (NC_000913) putative membrane protein [Esc... 81 1e-14
ref|NP_541781.1| (NC_003318) MULTIDRUG RESISTANCE PROTEIN A... 81 2e-14
ref|NP_539570.1| (NC_003317) periplasmic component of efflu... 76 6e-13
ref|NP_213477.1| (NC_000918) acriflavin resistance protein ... 74 2e-12
ref|NP_404258.1| (NC_003143) putative HlyD family secretion... 74 2e-12
ref|NP_108370.1| (NC_002678) efflux pump protein FarA [Meso... 74 3e-12
ref|NP_541771.1| (NC_003318) Multidrug resistance efflux pu... 71 2e-11
sp|Q93AA7|Y873_YERPE Hypothetical membrane protein Ecs0873 ... 70 3e-11
ref|NP_542096.1| (NC_003318) MULTIDRUG RESISTANCE PROTEIN A... 69 7e-11
ref|NP_231296.1| (NC_002505) conserved hypothetical protein... 69 1e-10
ref|NP_437946.1| (NC_003078) putative protein secretion pro... 68 2e-10
gb|AAL95701.1|AF360362_3 (AF360362) TrpB [Pseudomonas putida] 68 2e-10
ref|NP_418506.1| (NC_000913) putative membrane protein [Esc... 67 2e-10
ref|NP_661011.1| (NC_002932) multidrug resistance protein A... 67 2e-10
sp|Q9L9D4|YBHG_THIFE Hypothetical protein in asrC 5'region ... 67 3e-10
ref|NP_290715.1| (NC_002655) putative membrane protein [Esc... 67 3e-10
ref|NP_273367.1| (NC_003112) fatty acid efflux system prote... 67 4e-10
gb|AAD54073.1| (AF132909) efflux pump protein FarA [Neisser... 67 4e-10
ref|NP_284862.1| (NC_003116) multidrug resistance transloca... 67 4e-10
ref|NP_489333.1| (NC_003272) hypothetical protein [Nostoc s... 66 6e-10
ref|NP_485542.1| (NC_003272) hypothetical protein [Nostoc s... 63 4e-09
ref|NP_359964.1| (NC_003103) multidrug resistance protein A... 63 5e-09
ref|NP_638835.1| (NC_003902) multidrug resistance efflux pu... 62 7e-09
ref|NP_487184.1| (NC_003272) hypothetical protein [Nostoc s... 62 1e-08
ref|NP_422508.1| (NC_002696) HlyD family secretion protein ... 61 2e-08
ref|NP_518284.1| (NC_003295) PROBABLE LIPOPROTEIN [Ralstoni... 61 2e-08
ref|NP_354111.1| (NC_003062) AGR_C_2013p [Agrobacterium tum... 60 3e-08
ref|NP_531784.1| (NC_003304) secretion protein [Agrobacteri... 60 3e-08
ref|NP_484495.1| (NC_003272) hypothetical protein [Nostoc s... 60 4e-08
ref|NP_485695.1| (NC_003272) hypothetical protein [Nostoc s... 60 4e-08
ref|NP_249928.1| (NC_002516) probable multidrug resistance ... 60 4e-08
ref|NP_604171.1| (NC_003454) Acriflavin resistance protein ... 59 6e-08
ref|NP_635960.1| (NC_003902) ABC transporter permease [Xant... 59 8e-08
ref|NP_640994.1| (NC_003919) multidrug resistance efflux pu... 59 8e-08
ref|NP_641780.1| (NC_003919) multidrug resistance efflux pu... 59 1e-07
ref|NP_406737.1| (NC_003143) multidrug resistance protein A... 58 2e-07
ref|NP_349864.1| (NC_003030) Permease, predicted cation eff... 57 2e-07
ref|NP_251526.1| (NC_002516) probable secretion protein [Ps... 56 5e-07
ref|NP_637697.1| (NC_003902) transport protein [Xanthomonas... 56 5e-07
ref|NP_294462.1| (NC_001263) conserved hypothetical protein... 56 5e-07
ref|NP_232448.1| (NC_002506) conserved hypothetical protein... 56 6e-07
ref|NP_213914.1| (NC_000918) cation efflux system (czcB-lik... 55 8e-07
ref|NP_289236.1| (NC_002655) multidrug resistance secretion... 55 1e-06
ref|NP_246922.1| (NC_002663) unknown [Pasteurella multocida... 55 1e-06
pir||T31342 ragD protein - Bradyrhizobium japonicum >gi|296... 55 1e-06
ref|NP_643945.1| (NC_003919) ABC transporter permease [Xant... 55 1e-06
ref|NP_213722.1| (NC_000918) putative protein [Aquifex aeol... 55 1e-06
ref|NP_439059.1| (NC_000907) multidrug resistance protein A... 54 2e-06
ref|NP_385240.1| (NC_003047) PUTATIVE TRANSPORT PROTEIN TRA... 54 2e-06
ref|NP_251211.1| (NC_002516) RND divalent metal cation effl... 54 2e-06
ref|NP_485546.1| (NC_003272) hypothetical protein [Nostoc s... 54 2e-06
gb|AAC31387.1| (AF047693) multidrug resistance efflux pump ... 54 3e-06
ref|NP_253846.1| (NC_002516) multidrug resistance protein [... 54 3e-06
ref|NP_461740.1| (NC_003197) multidrug resistance secretion... 54 3e-06
ref|NP_387005.1| (NC_003047) PUTATIVE MULTIDRUG EFFLUX SYST... 53 5e-06
ref|NP_520847.1| (NC_003295) PROBABLE MULTIDRUG RESISTANCE ... 53 5e-06
ref|NP_484489.1| (NC_003272) hypothetical protein [Nostoc s... 52 7e-06
ref|NP_103897.1| (NC_002678) probable secretion protein [Me... 52 7e-06
pir||JC1344 multidrug resistant protein emrA - Escherichia ... 52 7e-06
ref|NP_417170.1| (NC_000913) multidrug resistance secretion... 52 7e-06
ref|NP_214161.1| (NC_000918) putative protein [Aquifex aeol... 52 9e-06
ref|NP_457212.1| (NC_003198) multidrug resistance protein A... 52 9e-06
ref|NP_252050.1| (NC_002516) probable secretion protein [Ps... 52 1e-05
ref|NP_636773.1| (NC_003902) multidrug resistance efflux pu... 52 1e-05
ref|NP_484852.1| (NC_003272) ABC transporter, membrane fusi... 52 1e-05
ref|NP_283526.1| (NC_003116) putative periplasmic protein [... 51 2e-05
ref|NP_273593.1| (NC_003112) AcrA/AcrE family protein [Neis... 51 2e-05
ref|NP_281789.1| (NC_002163) putative periplasmic protein [... 50 3e-05
dbj|BAA11236.1| (D78168) EmrK [Escherichia coli] 50 5e-05
dbj|BAA16239.1| (D90867) MULTIDRUG RESISTANCE PROTEIN K. [E... 50 5e-05
ref|NP_416869.1| (NC_000913) multidrug resistance protein K... 50 5e-05
ref|NP_288938.1| (NC_002655) multidrug resistance protein K... 50 5e-05
ref|NP_220628.1| (NC_000963) MULTIDRUG RESISTANCE PROTEIN A... 49 8e-05
ref|NP_386862.1| (NC_003047) PUTATIVE MULTIDRUG EFFLUX SYST... 49 8e-05
ref|NP_488320.1| (NC_003272) heterocyst specific ABC-transp... 49 1e-04
ref|NP_245934.1| (NC_002663) unknown [Pasteurella multocida... 48 1e-04
ref|NP_102993.1| (NC_002678) hypothetical protein [Mesorhiz... 48 1e-04
ref|NP_522053.1| (NC_003296) PROBABLE COBALT-ZINC-CADMIUM R... 48 2e-04
ref|NP_404957.1| (NC_003143) putative HlyD family secretion... 47 2e-04
ref|NP_440708.1| (NC_000911) unknown protein [Synechocystis... 47 2e-04
emb|CAC44350.1| (AJ410307) EmrA protein [Erwinia chrysanthemi] 47 2e-04
ref|NP_487687.1| (NC_003272) heterocyst specific ABC-transp... 47 2e-04
gb|AAG10498.1|AF279106_60 (AF279106) predicted transporter ... 47 3e-04
gb|AAD33771.1|AF139107_1 (AF139107) hypothetical multidrug ... 47 3e-04
ref|NP_251120.1| (NC_002516) conserved hypothetical protein... 47 3e-04
ref|NP_251826.1| (NC_002516) probable secretion protein [Ps... 47 4e-04
ref|NP_105602.1| (NC_002678) multidrug resistance efflux pu... 47 4e-04
ref|NP_486692.1| (NC_003272) hypothetical protein [Nostoc s... 47 4e-04
ref|NP_231053.1| (NC_002505) multidrug resistance protein V... 46 5e-04
ref|NP_603413.1| (NC_003454) Acriflavin resistance protein ... 46 5e-04
ref|NP_478266.1| (NC_003240) ORF_ID:all7619~hypothetical pr... 46 7e-04
ref|NP_523022.1| (NC_003296) PUTATIVE ATP-BINDING ABC TRANS... 45 9e-04
ref|NP_354799.1| (NC_003062) AGR_C_3332p [Agrobacterium tum... 45 0.001
ref|NP_662111.1| (NC_002932) conserved hypothetical protein... 45 0.001
ref|NP_286650.1| (NC_002655) putative membrane protein [Esc... 45 0.001
ref|NP_356179.1| (NC_003063) AGR_L_783p [Agrobacterium tume... 45 0.001
sp|P58410|MACA_ECO57 Macrolide-specific efflux protein macA... 45 0.001
ref|NP_532495.1| (NC_003304) HlyD family secretion protein ... 45 0.001
ref|NP_534956.1| (NC_003305) multidrug resistance efflux pu... 45 0.001
ref|NP_049065.1| (NC_002033) putative aromatic efflux pump ... 45 0.001
ref|NP_478279.1| (NC_003240) ORF_ID:all7632~hypothetical pr... 45 0.001
ref|NP_519974.1| (NC_003295) PROBABLE MULTIDRUG RESISTANCE ... 43 0.004
ref|NP_349267.1| (NC_003030) Pyruvate carboxylase, PYKA [Cl... 43 0.004
ref|NP_107647.1| (NC_002678) component of multidrug efflux ... 43 0.006
ref|NP_104714.1| (NC_002678) RND efflux membrane fusion pro... 43 0.006
sp|P75830|MACA_ECOLI Macrolide-specific efflux protein macA... 42 0.007
ref|NP_253281.1| (NC_002516) hypothetical protein [Pseudomo... 42 0.007
ref|NP_415399.1| (NC_000913) putative membrane protein [Esc... 42 0.007
ref|NP_233028.1| (NC_002506) AcrA/AcrE family protein [Vibr... 42 0.007
ref|NP_539276.1| (NC_003317) periplasmic component of efflu... 42 0.007
ref|NP_230560.1| (NC_002505) conserved hypothetical protein... 42 0.010
ref|NP_489013.1| (NC_003272) heterocyst specific ABC-transp... 42 0.010
ref|NP_441885.1| (NC_000911) hypothetical protein [Synechoc... 42 0.010
>ref|NP_208279.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
sp|P94851|AN36_HELPY 36 kDa antigen
pir||H64705 conserved hypothetical secreted protein HP1488 - Helicobacter
pylori (strain 26695)
gb|AAD08523.1| (AE000647) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 329
Score = 637 bits (1643), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MSNSMLDKNKAILTGGGALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKV 60
MSNSMLDKNKAILTGGGALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKV
Sbjct: 1 MSNSMLDKNKAILTGGGALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKV 60
Query: 61 FVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQ 120
FVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQ
Sbjct: 61 FVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQ 120
Query: 121 AAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASS 180
AAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASS
Sbjct: 121 AAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASS 180
Query: 181 ESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDL 240
ESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDL
Sbjct: 181 ESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDL 240
Query: 241 KDSWLKISVPEKYLNEFKVGKEFEGYIPALKKSTKFRVKYLSVMGDFATWKATNNSNTYD 300
KDSWLKISVPEKYLNEFKVGKEFEGYIPALKKSTKFRVKYLSVMGDFATWKATNNSNTYD
Sbjct: 241 KDSWLKISVPEKYLNEFKVGKEFEGYIPALKKSTKFRVKYLSVMGDFATWKATNNSNTYD 300
Query: 301 MKSYEVEAIPLEELENFRVGMSVLVTIKP 329
MKSYEVEAIPLEELENFRVGMSVLVTIKP
Sbjct: 301 MKSYEVEAIPLEELENFRVGMSVLVTIKP 329
>gb|AAB81283.1| (U86610) 36 kDa protein [Helicobacter pylori]
Length = 329
Score = 630 bits (1624), Expect = e-180
Identities = 325/329 (98%), Positives = 327/329 (98%)
Query: 1 MSNSMLDKNKAILTGGGALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKV 60
MSNSMLDKNKAILTGGGALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKV
Sbjct: 1 MSNSMLDKNKAILTGGGALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKV 60
Query: 61 FVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQ 120
FVKKGD IKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQ
Sbjct: 61 FVKKGDRIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQ 120
Query: 121 AAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASS 180
AAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASS
Sbjct: 121 AAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASS 180
Query: 181 ESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDL 240
ESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDL
Sbjct: 181 ESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDL 240
Query: 241 KDSWLKISVPEKYLNEFKVGKEFEGYIPALKKSTKFRVKYLSVMGDFATWKATNNSNTYD 300
KDSWLKISVPEKYLN+FKVGKEFEGYIPALK+S KFRVKYLSVMGDFATWKATNNSNTYD
Sbjct: 241 KDSWLKISVPEKYLNDFKVGKEFEGYIPALKRSAKFRVKYLSVMGDFATWKATNNSNTYD 300
Query: 301 MKSYEVEAIPLEELENFRVGMSVLVTIKP 329
MKSYEVEAIPLEELENFRVGMSVLVTIKP
Sbjct: 301 MKSYEVEAIPLEELENFRVGMSVLVTIKP 329
>ref|NP_224099.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZJD1|AN36_HELPJ 36 kDa antigen
pir||H71815 hypothetical protein jhp1381 - Helicobacter pylori (strain J99)
gb|AAD06952.1| (AE001560) putative [Helicobacter pylori J99]
Length = 329
Score = 625 bits (1613), Expect = e-178
Identities = 323/329 (98%), Positives = 325/329 (98%)
Query: 1 MSNSMLDKNKAILTGGGALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKV 60
MSNSMLDKNKAILTGGGALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKV
Sbjct: 1 MSNSMLDKNKAILTGGGALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKV 60
Query: 61 FVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQ 120
FVKKGD IKKGDLVFSISSPELEAKLAQAEAGHKAAKA+SDEVKRGSRDETINSARDVWQ
Sbjct: 61 FVKKGDRIKKGDLVFSISSPELEAKLAQAEAGHKAAKAVSDEVKRGSRDETINSARDVWQ 120
Query: 121 AAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASS 180
AAKSQA LAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASS
Sbjct: 121 AAKSQANLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASS 180
Query: 181 ESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDL 240
ESKIAAKAKESAALGQVNEVESYLKDVKA APIDGEVSNVLLSGGELSPKGFPVVLMIDL
Sbjct: 181 ESKIAAKAKESAALGQVNEVESYLKDVKALAPIDGEVSNVLLSGGELSPKGFPVVLMIDL 240
Query: 241 KDSWLKISVPEKYLNEFKVGKEFEGYIPALKKSTKFRVKYLSVMGDFATWKATNNSNTYD 300
KDSWLKISVPEKYLNEFKVGKEFEGYIPALK+S KFRVKYLSVMGDFATWKATNNSNTYD
Sbjct: 241 KDSWLKISVPEKYLNEFKVGKEFEGYIPALKRSAKFRVKYLSVMGDFATWKATNNSNTYD 300
Query: 301 MKSYEVEAIPLEELENFRVGMSVLVTIKP 329
MKSYEVEAIPLEELENFRVGMSVLVTIKP
Sbjct: 301 MKSYEVEAIPLEELENFRVGMSVLVTIKP 329
>ref|NP_231247.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||A82178 conserved hypothetical protein VC1607 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94761.1| (AE004238) conserved hypothetical protein [Vibrio cholerae]
Length = 324
Score = 305 bits (780), Expect = 6e-82
Identities = 149/301 (49%), Positives = 216/301 (71%)
Query: 27 FYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKL 86
FY AY+P+ LQG +E+++YS+SSKVPGRI++V V+KGD ++KG L+F++ SPE++AKL
Sbjct: 24 FYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRKGDQVEKGQLIFTLLSPEIDAKL 83
Query: 87 AQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVAS 146
QA AG KAA AL+ E + G+R++ I +A+D W A++ A LA++TY RV +LY++GV S
Sbjct: 84 EQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQAAAELAEKTYLRVNNLYNDGVVS 143
Query: 147 LQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKD 206
QKRDEA +++ KY ESAA Q Y++A GA E+K AA K A G V EVE+Y D
Sbjct: 144 EQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQAALEKARMAAGAVAEVEAYAAD 203
Query: 207 VKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGY 266
K + DGEVS VL+ GEL+P+GFPVV ++D +D+W +V E L F G +F Y
Sbjct: 204 TKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFNVREDLLKHFTQGAQFTAY 263
Query: 267 IPALKKSTKFRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPLEELENFRVGMSVLVT 326
+PAL KS +F+V +++VMGDFATW++T+ + +D++++EVEA P+ E R+GMSV+V
Sbjct: 264 LPALNKSIEFKVTHVAVMGDFATWRSTDATQGFDLRTFEVEARPVTPTEGLRMGMSVVVK 323
Query: 327 I 327
+
Sbjct: 324 L 324
>gb|AAD39494.1|AF145798_1 (AF145798) immunoreactive 36 kDa antigen PG14 [Porphyromonas
gingivalis]
Length = 331
Score = 225 bits (574), Expect = 5e-58
Identities = 122/326 (37%), Positives = 195/326 (59%), Gaps = 7/326 (2%)
Query: 7 DKNKAILTGGGALLLGLI----VLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFV 62
+K + I+ LLLG+I ++ + RP E++QG +E EY VSSKVPGRI+++ V
Sbjct: 4 NKQRNIVFPAFLLLLGVIAVVTIVGFFMLRPAEEIIQGQIEVTEYRVSSKVPGRIKELRV 63
Query: 63 KKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAA 122
+G ++ GD + I +P++ AK+ QA+A AA+A + + +G+R E I +A ++WQ A
Sbjct: 64 SEGQQVQAGDTLAVIEAPDVAAKMEQAKAAEAAAQAQNAKALKGARSEQIQAAYEMWQKA 123
Query: 123 KSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSES 182
++ +A +T++RVQ+LYD GV QK DEA A ++ + AA +Y MA GA E
Sbjct: 124 QAGVAIATKTHQRVQNLYDQGVVPAQKLDEATAQRDAAIATQKAAEAQYNMARNGAERED 183
Query: 183 KIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKD 242
K+AA A A G V EVESY+ + AP GEVS + GEL G P++ + ++ D
Sbjct: 184 KLAASALVDRARGAVAEVESYINETYLIAPRAGEVSEIFPKAGELVGTGAPIMNIAEMGD 243
Query: 243 SWLKISVPEKYLNEFKVGKEFEGYIPAL-KKSTKFRVKYLSVMGDFATWKATNNSNTYDM 301
W +V E +L+ +G E +PAL ++ +F++ ++ MG +A WKAT + YD+
Sbjct: 244 MWASFAVREDFLSSMTMGAVLETVVPALNEEKVRFKITFIKNMGTYAAWKATKTTGQYDL 303
Query: 302 KSYEVEA--IPLEELENFRVGMSVLV 325
K++EV+A ++ + R GMSV++
Sbjct: 304 KTFEVKATLADKDKAQKLRPGMSVII 329
>ref|NP_252092.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||G83220 hypothetical protein PA3402 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG06790.1|AE004761_6 (AE004761) hypothetical protein [Pseudomonas aeruginosa]
Length = 323
Score = 146 bits (368), Expect = 4e-34
Identities = 89/308 (28%), Positives = 160/308 (51%), Gaps = 2/308 (0%)
Query: 19 LLLGLIVL-FYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSI 77
L+L ++ + YL +LQG +A VSSK GR++ + V++GD +K+GDL+ S+
Sbjct: 11 LILAIVAITLYLRLHNPPLLLQGEADATNVIVSSKAKGRVQVLHVRRGDEVKQGDLLISL 70
Query: 78 SSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQ 137
SPELEA+L A A+A DE G+R+E+I + + A+++ A+ ++R Q
Sbjct: 71 DSPELEAQLDALHAARNQAQAQLDESLHGTREESIRALKASLAQAEAELRNAESDFQRNQ 130
Query: 138 DLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQV 197
+ + G S + D + + + + A L G E + A +A A Q+
Sbjct: 131 QMVERGFLSRTQFDLSRRERDVARDRVAEARANLDEGLKGDREERRQALQAAVRRADAQI 190
Query: 198 NEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEF 257
E+++ + D++ AP++GEV + GEL P++ ++ L DS+ ++ E L +
Sbjct: 191 AELQAQIDDLQVRAPVNGEVGPIPAEQGELINAYSPLLTLVRLDDSYFVFNLREDILAKV 250
Query: 258 KVGKEFEGYIPAL-KKSTKFRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPLEELEN 316
+ G +P L + ++Y++ +GDF+T +AT + +D+K++E PL+
Sbjct: 251 RKGDRIVMQVPGLGGAEVETELRYIAPLGDFSTRRATRATGDFDLKTFETRFYPLQPTPG 310
Query: 317 FRVGMSVL 324
R GMS L
Sbjct: 311 LRPGMSAL 318
>gb|AAL46999.1|AF448250_3 (AF448250) putative HylD secretion protein [Bacteroides sp. 139]
Length = 358
Score = 96.3 bits (238), Expect = 4e-19
Identities = 83/301 (27%), Positives = 140/301 (45%), Gaps = 15/301 (4%)
Query: 40 GFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHK----A 95
G LEA E +S+K+ GRI+ + V +GD +K G ++ + LEA+LA+A+A + A
Sbjct: 44 GRLEATEIDISTKLAGRIKDIQVDEGDFVKAGQVLAHMQIDVLEAQLAEAQAQYNRSLTA 103
Query: 96 AKALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYA 155
+ E+K R+ + +A+ KS+ A + + R ++L S Q+ D+
Sbjct: 104 KSSAYAEIKL--RESNVEAAKATVIQRKSEFDAADKRFLRTEELVKRNAISRQQLDDDKR 161
Query: 156 AYESTKYNESAAYQKYKMALGG--ASSESKIAAKAKESAALGQVNEVESYLKDVKATAPI 213
A S++ AA + A A+ I A+A AA +N +++ + D + AP
Sbjct: 162 AMRSSEAAILAAQAQVAAAQAAVEAAKSQAIGAEAAVKAAQATINRIQADIDDSQLVAPR 221
Query: 214 DGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPALKKS 273
DG V + GE+ G ++ +IDL D ++ +PE +G E I AL K
Sbjct: 222 DGRVQYRIAQPGEVLGAGGKILNLIDLSDVYMTFFLPEAEAGRLTIGSEAHIIIDALPKY 281
Query: 274 T-KFRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPLEEL-----ENFRVGMSVLVTI 327
RV +++ F T K +N + V+A +EL E + G+ +V I
Sbjct: 282 VIPARVTFVASAAQF-TPKTVETANERQKLMFRVKAQIDKELLQKYIELVKTGVPGVVWI 340
Query: 328 K 328
K
Sbjct: 341 K 341
>ref|NP_253919.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||H82993 conserved hypothetical protein PA5232 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG08617.1|AE004935_14 (AE004935) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 357
Score = 94.0 bits (232), Expect = 2e-18
Identities = 81/302 (26%), Positives = 145/302 (47%), Gaps = 13/302 (4%)
Query: 18 ALLLGLIVLFYLAYRPKAEVLQGF------LEAREYSVSSKVPGRIEKVFVKKGDHIKKG 71
A LLG+ VL + RP + +GF +EA E V++K+PGR+ ++ V +GD +K G
Sbjct: 16 AALLGVGVLVWQVSRPTG-LGEGFASGNGRIEATEVDVAAKLPGRVAEIKVDEGDFVKAG 74
Query: 72 DLVFSISSPELEAKLAQAEAGHKAAK--ALSDEVKRGSRDETINSARDVWQAAKSQATLA 129
++V + + LEA+LAQA+A + A+ L+ R+ ++A+ V +++ T A
Sbjct: 75 EIVARMDTQVLEAQLAQAQAQVRQAENAKLTATSLVAQRESEKSTAQAVVAQRQAELTAA 134
Query: 130 KETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGG--ASSESKIAAK 187
++ + R + L Q+ D+ A +S + SAA + A A I A+
Sbjct: 135 QKRFTRTEALVKRNALPQQQLDDDRATLQSAQAALSAARSQVISAQAAIEAGRSQVIEAQ 194
Query: 188 AKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKI 247
+ AA V +++ + D AP +G V + GE+ P G ++ M+DL D ++
Sbjct: 195 SAIEAAKASVARLQADIDDSLLKAPRNGRVQYRVAQPGEVLPAGGKLLNMVDLADVYMTF 254
Query: 248 SVPEKYLNEFKVGKEFEGYIPALKKST-KFRVKYLSVMGDFATWKATNNSNTYDMKSYEV 306
+P +G+E I A+ +V Y++ + F T K +N + + V
Sbjct: 255 FLPSMQAGRVGLGQEVRLVIDAVPDYVIPAKVSYVASVAQF-TPKTVETANEREKLMFRV 313
Query: 307 EA 308
+A
Sbjct: 314 KA 315
>ref|NP_355996.1| (NC_003063) AGR_L_433p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_535144.1| (NC_003305) HlyD family secretion protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK88781.1| (AE008219) AGR_L_433p [Agrobacterium tumefaciens str. C58 (Cereon)]
gb|AAL45460.1| (AE009395) HlyD family secretion protein [Agrobacterium tumefaciens
str. C58 (U. Washington)]
Length = 354
Score = 93.2 bits (230), Expect = 4e-18
Identities = 81/320 (25%), Positives = 141/320 (43%), Gaps = 13/320 (4%)
Query: 10 KAILTGGGALLLGLIVLFYLAYRPKAEVLQGF------LEAREYSVSSKVPGRIEKVFVK 63
K +L G ++L + F + + GF +EA E +S+K GR++ + V+
Sbjct: 4 KGLLIGLAVVVLAIAAYFAWSKLTAEGLPSGFVASNGRIEAVEIDISTKTAGRLQDIMVR 63
Query: 64 KGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKR--GSRDETINSARDVWQA 121
+GD +K G ++ + + +LEAK QAEA + AK D R+ SA V +
Sbjct: 64 EGDFVKAGQVLAQMDTAQLEAKKRQAEAQLRRAKIAIDTAHSLVAQREAEKTSALAVVEQ 123
Query: 122 AKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKM--ALGGAS 179
K+Q A +TY R + L S Q D++ A +S + ++A A A+
Sbjct: 124 RKAQLDSASKTYARSRQLLTGNAVSQQIVDDSEATEQSARATLASAQASLAASDAAINAA 183
Query: 180 SESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMID 239
I A+A AA + +E+ + D +P DG V + GE+ G V+ ++D
Sbjct: 184 KAQIIDAEAAVDAAQADIESIETDIVDATLKSPRDGRVQYRIAQPGEVLSAGGRVLNLVD 243
Query: 240 LKDSWLKISVPEKYLNEFKVGKEFEGYIPALKKST-KFRVKYLSVMGDFATWKATNNSNT 298
L D ++ +P +G + + A + T +V +++ + F T K
Sbjct: 244 LGDVYMTFFLPTAEAGRTSMGSDVRLILDAAPQYTIPAKVSFVADVAQF-TPKTVETEEE 302
Query: 299 YDMKSYEVEA-IPLEELENF 317
++ V A IP E L+ +
Sbjct: 303 RQKLTFRVRAQIPQELLQKY 322
>ref|NP_105427.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51213.1| (AP003004) hypothetical protein [Mesorhizobium loti]
Length = 317
Score = 90.5 bits (223), Expect = 2e-17
Identities = 69/260 (26%), Positives = 118/260 (44%), Gaps = 4/260 (1%)
Query: 30 AYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQA 89
A P A + G++E ++ ++E V VK+GD + G V ++ S + + +AQA
Sbjct: 16 ACAPAAPLAVGYVEGDYVLLAPIEVAQVETVAVKRGDRVMPGTTVVTLESADAKIAVAQA 75
Query: 90 EAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQK 149
EA A+A +++ G R E I + + AK+QA AK Y R DL+ G +
Sbjct: 76 EASLAQAQAQLADLQVGKRPEEIAALKAQVDMAKAQADDAKRKYDRAADLFKRGTGTQAD 135
Query: 150 RDEAYAAYESTKYNESAAYQKYKMALGG--ASSESKIAAKAKESAALGQVNEVESYLKDV 207
D A A E+ N + +A+GG A E+ AA + A + + + L
Sbjct: 136 YDTASATLETA--NAQVGQAQANLAVGGLPARPETIKAADNQVKQAQAALQQAQWRLSKR 193
Query: 208 KATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYI 267
AP G V++V+ + G+ + PV+ M+ L + +PE + ++G +
Sbjct: 194 TLAAPSPGRVNDVIRNPGDTAGPTAPVISMLPDGAVKLSVYIPEAAFSSVRIGSLLSVHC 253
Query: 268 PALKKSTKFRVKYLSVMGDF 287
+ K RV Y+S +F
Sbjct: 254 DGCGEGVKARVSYVSPDPEF 273
>ref|NP_286558.1| (NC_002655) putative membrane protein [Escherichia coli O157:H7
EDL933]
gb|AAG55166.1|AE005260_5 (AE005260) putative membrane protein [Escherichia coli O157:H7
EDL933]
Length = 332
Score = 89.0 bits (219), Expect = 7e-17
Identities = 77/321 (23%), Positives = 140/321 (42%), Gaps = 6/321 (1%)
Query: 10 KAILTGGGALLLGLIVL----FYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKG 65
K ++ G ++L +V +Y + + L G ++ R ++S +V GR+E + V +G
Sbjct: 4 KPVVIGLAVVVLAAVVAGXYWWYQSRQDNGLTLYGNVDIRTVNLSFRVGGRVESLAVDEG 63
Query: 66 DHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQ 125
D IK G ++ + E L QA+AG A+A D + G RDE I A + A++
Sbjct: 64 DAIKAGQVLGELDHKPYEIALMQAKAGVSVAQAQYDLMLAGYRDEXIAQAAAAVKQAQAA 123
Query: 126 ATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIA 185
A+ Y R Q L+ + S + A ++ + + +A K + G +
Sbjct: 124 YDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLRQYRSGNREQDIAQ 183
Query: 186 AKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWL 245
AKA A Q+ + E L+D AP DG + + G + +G V + + W+
Sbjct: 184 AKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRPVWV 243
Query: 246 KISVPEKYLNEFKVGKEFEGYIPAL-KKSTKFRVKYLSVMGDFATWKATNNSNTYDMKSY 304
+ V E+ L++ + G++ Y K ++ ++S +F T K + Y
Sbjct: 244 RAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEF-TPKTVETPDLRTDLVY 302
Query: 305 EVEAIPLEELENFRVGMSVLV 325
+ + + + R GM V V
Sbjct: 303 RLRIVVTDADDALRQGMPVTV 323
>ref|NP_308900.1| (NC_002695) putative membrane protein [Escherichia coli O157:H7]
sp|Q8X7Y9|YBHG_ECO57 Hypothetical membrane protein ybhG
dbj|BAB34296.1| (AP002553) putative membrane protein [Escherichia coli O157:H7]
Length = 332
Score = 88.6 bits (218), Expect = 9e-17
Identities = 77/321 (23%), Positives = 140/321 (42%), Gaps = 6/321 (1%)
Query: 10 KAILTGGGALLLGLIVL----FYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKG 65
K ++ G ++L +V +Y + + L G ++ R ++S +V GR+E + V +G
Sbjct: 4 KPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLTLYGNVDIRTVNLSFRVGGRVESLAVDEG 63
Query: 66 DHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQ 125
D IK G ++ + E L QA+AG A+A D + G RDE I A + A++
Sbjct: 64 DAIKAGQVLGELDHKPYEIALMQAKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQAA 123
Query: 126 ATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIA 185
A+ Y R Q L+ + S + A ++ + + +A K + G +
Sbjct: 124 YDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLRQYRSGNREQDIAQ 183
Query: 186 AKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWL 245
AKA A Q+ + E L+D AP DG + + G + +G V + + W+
Sbjct: 184 AKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRPVWV 243
Query: 246 KISVPEKYLNEFKVGKEFEGYIPAL-KKSTKFRVKYLSVMGDFATWKATNNSNTYDMKSY 304
+ V E+ L++ + G++ Y K ++ ++S +F T K + Y
Sbjct: 244 RAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEF-TPKTVETPDLRTDLVY 302
Query: 305 EVEAIPLEELENFRVGMSVLV 325
+ + + + R GM V V
Sbjct: 303 RLRIVVTDADDALRQGMPVTV 323
>ref|NP_437413.1| (NC_003078) putative protein secretion protein, HlyD family
[Sinorhizobium meliloti]
sp|Q92V44|YJH3_RHIME Hypothetical membrane protein RB0873
emb|CAC49273.1| (AL603645) putative protein secretion protein, HlyD family
[Sinorhizobium meliloti]
Length = 334
Score = 87.8 bits (216), Expect = 2e-16
Identities = 68/253 (26%), Positives = 117/253 (45%), Gaps = 4/253 (1%)
Query: 11 AILTGG--GALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHI 68
AI+ G GA L A P+ VL G ++ R+ S+ +V GRI ++ V +GD +
Sbjct: 9 AIVAAGLAGAWWFDLPARLGFAREPRQAVLYGNVDIRQVSLGFRVSGRIAELRVDEGDSV 68
Query: 69 KKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATL 128
K GD++ + + + AEA + +A +++ G+R I AR + ++
Sbjct: 69 KAGDVIAKLDAEPFRQAVGAAEAEAEVTRATLAKLRAGARAAEIAQARATHEERLAELEN 128
Query: 129 AKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKA 188
AK ++R + L NG S + D+A A+ + +A + + G +E AA A
Sbjct: 129 AKLAFERAKQLRPNGTISQAELDQANASRAAADARARSAREALVLLEEGNRAEDIAAAAA 188
Query: 189 KESAALGQVNEVESYLKDVKATAPIDGEV-SNVLLSGGELSPKGFPVVLMIDLKDSWLKI 247
+ +AA + + L+D + AP DG + S V +G +SP VL + + W++
Sbjct: 189 QANAATAKADSARISLEDTQLAAPSDGVILSRVRETGAIVSPADIVYVLSL-TEPVWVRA 247
Query: 248 SVPEKYLNEFKVG 260
V E L G
Sbjct: 248 YVAEPDLGRVHPG 260
>ref|NP_415316.1| (NC_000913) putative membrane protein [Escherichia coli K12]
sp|P75777|YBHG_ECOLI Hypothetical membrane protein ybhG
pir||C64816 hypothetical protein b0795 precursor - Escherichia coli
gb|AAC73882.1| (AE000181) putative membrane protein [Escherichia coli K12]
dbj|BAA35455.1| (D90716) Hypothetical protein f355 [Escherichia coli]
dbj|BAA35461.1| (D90717) Hypothetical protein f355 [Escherichia coli]
Length = 332
Score = 86.7 bits (213), Expect = 3e-16
Identities = 76/321 (23%), Positives = 140/321 (42%), Gaps = 6/321 (1%)
Query: 10 KAILTGGGALLLGLIVL----FYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKG 65
K ++ G ++L +V +Y + + L G ++ R ++S +V GR+E + V +G
Sbjct: 4 KPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLTLYGNVDIRTVNLSFRVGGRVESLAVDEG 63
Query: 66 DHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQ 125
D IK G ++ + E L QA+AG A+A D + G R+E I A + A++
Sbjct: 64 DAIKAGQVLGELDHKPYEIALMQAKAGVSVAQAQYDLMLAGYRNEEIAQAAAAVKQAQAA 123
Query: 126 ATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIA 185
A+ Y R Q L+ + S + A ++ + + +A K + G +
Sbjct: 124 YDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLRQYRSGNREQDIAQ 183
Query: 186 AKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWL 245
AKA A Q+ + E L+D AP DG + + G + +G V + + W+
Sbjct: 184 AKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRPVWV 243
Query: 246 KISVPEKYLNEFKVGKEFEGYIPAL-KKSTKFRVKYLSVMGDFATWKATNNSNTYDMKSY 304
+ V E+ L++ + G++ Y K ++ ++S +F T K + Y
Sbjct: 244 RAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEF-TPKTVETPDLRTDLVY 302
Query: 305 EVEAIPLEELENFRVGMSVLV 325
+ + + + R GM V V
Sbjct: 303 RLRIVVTDADDALRQGMPVTV 323
>ref|NP_462488.1| (NC_003197) paral putative membrane protein [Salmonella typhimurium
LT2]
gb|AAL22447.1| (AE008865) paral putative membrane protein [Salmonella typhimurium
LT2]
Length = 355
Score = 85.9 bits (211), Expect = 6e-16
Identities = 69/273 (25%), Positives = 132/273 (48%), Gaps = 22/273 (8%)
Query: 6 LDKNKAILTGGGA-LLLGLIVLFYLAYRPKAEVLQGF------LEAREYSVSSKVPGRIE 58
+DK K L GA +L+ + + + RP A + +GF +EA E +++K+ GRI+
Sbjct: 1 MDKMKRHLVWWGAGILVAVAAIAWWMLRP-AGIPEGFAASNGRIEATEVDIATKIAGRID 59
Query: 59 KVFVKKGDHIKKGDLVFSISSPELE-------AKLAQAEAGHKAAKALSDEVKRGSRDET 111
+ V +G +++G+++ + + L+ A++ +AE+ AA+AL ++ R
Sbjct: 60 TILVSEGQFVRQGEVLAKMDTRVLQEQRLEAIAQIKEAESAVAAARALLEQ-----RQSE 114
Query: 112 INSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKY 171
+ +A+ V + +++ + + R + L G S+Q+ D+ AA ES + A +
Sbjct: 115 MRAAQSVVKQREAELDSVSKRHVRSRSLSQRGAVSVQQLDDDRAAAESARAALETAKAQV 174
Query: 172 KMALGG--ASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSP 229
A A+ S I A+ + AA + + + D + AP DG V + GE+
Sbjct: 175 SAAKAAIEAARTSIIQAQTRVEAAQATERRIVADIDDSELKAPRDGRVQYRVAEPGEVLS 234
Query: 230 KGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKE 262
G V+ M+DL D ++ +P + K+G E
Sbjct: 235 AGGRVLNMVDLSDVYMTFFLPTEQAGLLKIGGE 267
>ref|NP_458335.1| (NC_003198) putative HlyD family secretion protein [Salmonella
enterica subsp. enterica serovar Typhi]
emb|CAD08043.1| (AL627281) putative HlyD family secretion protein [Salmonella
enterica subsp. enterica serovar Typhi]
Length = 355
Score = 84.7 bits (208), Expect = 1e-15
Identities = 68/271 (25%), Positives = 131/271 (48%), Gaps = 22/271 (8%)
Query: 6 LDKNKAILTGGGA-LLLGLIVLFYLAYRPKAEVLQGF------LEAREYSVSSKVPGRIE 58
+DK K L GA +L+ + + + RP A + +GF +EA E +++K+ GRI+
Sbjct: 1 MDKMKRHLVWWGAGILVAVAAIAWWMLRP-AGIPEGFAASNGRIEATEVDIATKIAGRID 59
Query: 59 KVFVKKGDHIKKGDLVFSISSPELE-------AKLAQAEAGHKAAKALSDEVKRGSRDET 111
+ V +G +++G+++ + + L+ A++ +AE+ AA+AL ++ R
Sbjct: 60 TILVSEGQFVRQGEVLAKMDTRVLQEQRLEAIAQIKEAESAVAAARALLEQ-----RQSE 114
Query: 112 INSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKY 171
+ +A+ V + +++ + + R + L G S+Q+ D+ AA ES + A +
Sbjct: 115 MRAAQSVVKQREAELDSVSKRHVRSRSLSQRGAVSVQQLDDDRAAAESARAALETAKAQV 174
Query: 172 KMALGG--ASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSP 229
A A+ S I A+ + AA + + + D + AP DG V + GE+
Sbjct: 175 SAAKAAIEAARTSIIQAQTRVEAAQATERRIVADIDDSELKAPRDGRVQYRVAEPGEVLS 234
Query: 230 KGFPVVLMIDLKDSWLKISVPEKYLNEFKVG 260
G V+ M+DL D ++ +P + K+G
Sbjct: 235 AGGRVLNMVDLSDVYMTFFLPTEQAGLLKIG 265
>ref|NP_312387.1| (NC_002695) putative membrane protein [Escherichia coli O157:H7]
dbj|BAB37783.1| (AP002565) putative membrane protein [Escherichia coli O157:H7]
Length = 355
Score = 84.3 bits (207), Expect = 2e-15
Identities = 72/274 (26%), Positives = 132/274 (47%), Gaps = 24/274 (8%)
Query: 6 LDKNKAILT--GGGALLLGLIVLFYLAYRPKAEVLQGF------LEAREYSVSSKVPGRI 57
+DK+K L G G L + IV ++L RP A V +GF +EA E ++SK+ GRI
Sbjct: 1 MDKSKRHLAWWGVGLLAVAAIVAWWLL-RP-AGVPEGFAVSNGRIEATEVDIASKIAGRI 58
Query: 58 EKVFVKKGDHIKKGDLVFSISSPELE-------AKLAQAEAGHKAAKALSDEVKRGSRDE 110
+ + VK+G +++G+++ + + L+ A++ +A++ AA+AL ++ R
Sbjct: 59 DTILVKEGQFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQ-----RQS 113
Query: 111 TINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTK--YNESAAY 168
+A+ + +++ + + R + L G S Q+ D+ AA ES + + A
Sbjct: 114 ETRAAQSLVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQ 173
Query: 169 QKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELS 228
A A+ + I A+ + AA + + + D + AP DG V + GE+
Sbjct: 174 VSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVL 233
Query: 229 PKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKE 262
G V+ M+DL D ++ +P + K+G E
Sbjct: 234 AAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGE 267
>ref|NP_290059.1| (NC_002655) putative membrane protein [Escherichia coli O157:H7
EDL933]
gb|AAG58620.1|AE005573_3 (AE005573) putative membrane protein [Escherichia coli O157:H7
EDL933]
Length = 355
Score = 84.3 bits (207), Expect = 2e-15
Identities = 72/274 (26%), Positives = 132/274 (47%), Gaps = 24/274 (8%)
Query: 6 LDKNKAILT--GGGALLLGLIVLFYLAYRPKAEVLQGF------LEAREYSVSSKVPGRI 57
+DK+K L G G L + IV ++L RP A V +GF +EA E ++SK+ GRI
Sbjct: 1 MDKSKRHLAWWGVGLLAVAAIVXWWLL-RP-AGVPEGFAVSNGRIEATEVDIASKIAGRI 58
Query: 58 EKVFVKKGDHIKKGDLVFSISSPELE-------AKLAQAEAGHKAAKALSDEVKRGSRDE 110
+ + VK+G +++G+++ + + L+ A++ +A++ AA+AL ++ R
Sbjct: 59 DTILVKEGQFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQ-----RQS 113
Query: 111 TINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTK--YNESAAY 168
+A+ + +++ + + R + L G S Q+ D+ AA ES + + A
Sbjct: 114 ETRAAQSLVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQ 173
Query: 169 QKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELS 228
A A+ + I A+ + AA + + + D + AP DG V + GE+
Sbjct: 174 VSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVL 233
Query: 229 PKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKE 262
G V+ M+DL D ++ +P + K+G E
Sbjct: 234 AAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGE 267
>ref|NP_455356.1| (NC_003198) HlyD-family secretion protein [Salmonella enterica
subsp. enterica serovar Typhi]
sp|Q8Z879|YBHG_SALTI Hypothetical membrane protein ybhG
emb|CAD05265.1| (AL627268) HlyD-family secretion protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 331
Score = 82.8 bits (203), Expect = 5e-15
Identities = 71/300 (23%), Positives = 129/300 (42%), Gaps = 2/300 (0%)
Query: 27 FYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKL 86
+Y + + L G ++ R ++S +V GR+ + V +GD IK G ++ + E L
Sbjct: 24 WYQSRQDDGLTLYGNVDIRTVNISFRVGGRLASLNVDEGDTIKAGQVLGELDHAPYENAL 83
Query: 87 AQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVAS 146
QA+AG A+A D + G RDE I A + A++ A+ Y R Q L+ + S
Sbjct: 84 MQAKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVRQAQAAYDYAQNFYNRQQGLWKSRTIS 143
Query: 147 LQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKD 206
+ A ++ + + +A K G + AKA A Q+ + + L+D
Sbjct: 144 ANDLENARSSRDQAQATLKSAQDKLSQYRTGNREQDIAQAKASLEQAKAQLAQAQLDLQD 203
Query: 207 VKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGY 266
AP +G + + G + G V+ + + W++ V E+ L++ + G++ Y
Sbjct: 204 TTLIAPANGTLLTRAVEPGSMLNAGSTVLTLSLTRPVWVRAYVDERNLSQTQPGRDILLY 263
Query: 267 IPAL-KKSTKFRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPLEELENFRVGMSVLV 325
K ++ ++S +F T K + Y + I + + R GM V V
Sbjct: 264 TDGRPDKPYHGKIGFVSPTAEF-TPKTVETPDLRTDLVYRLRIIVTDADDALRQGMPVTV 322
>ref|NP_459796.1| (NC_003197) membrane permeases, predicted cation efflux pump
[Salmonella typhimurium LT2]
sp|Q8ZQP0|YBHG_SALTY Hypothetical membrane protein ybhG
gb|AAL19755.1| (AE008733) membrane permeases, predicted cation efflux pump
[Salmonella typhimurium LT2]
Length = 331
Score = 82.8 bits (203), Expect = 5e-15
Identities = 71/300 (23%), Positives = 129/300 (42%), Gaps = 2/300 (0%)
Query: 27 FYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKL 86
+Y + + L G ++ R ++S +V GR+ + V +GD IK G ++ + E L
Sbjct: 24 WYQSRQDDGLTLYGNVDIRTVNISFRVGGRLASLNVDEGDTIKAGQVLGELDHAPYENAL 83
Query: 87 AQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVAS 146
QA+AG A+A D + G RDE I A + A++ A+ Y R Q L+ + S
Sbjct: 84 MQAKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVRQAQAAYDYAQNFYNRQQGLWKSRTIS 143
Query: 147 LQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKD 206
+ A ++ + + +A K G + AKA A Q+ + + L+D
Sbjct: 144 ANDLENARSSRDQAQATLKSAQDKLSQYRTGNREQDIAQAKASLEQAKAQLAQAQLDLQD 203
Query: 207 VKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGY 266
AP +G + + G + G V+ + + W++ V E+ L++ + G++ Y
Sbjct: 204 TTLIAPANGTLLTRAVEPGSMLNAGSTVLTLSLTRPVWVRAYVDERNLSQTQPGRDILLY 263
Query: 267 IPAL-KKSTKFRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPLEELENFRVGMSVLV 325
K ++ ++S +F T K + Y + I + + R GM V V
Sbjct: 264 TDGRPDKPYHGKIGFVSPTAEF-TPKTVETPDLRTDLVYRLRIIVTDADDALRQGMPVTV 322
>ref|NP_417944.1| (NC_000913) putative membrane protein [Escherichia coli K12]
sp|P37626|YHII_ECOLI Hypothetical protein yhiI precursor
pir||S47707 hypothetical 38.8K protein (rhsB-pit intergenic region) -
Escherichia coli
gb|AAB18463.1| (U00039) No definition line found [Escherichia coli]
gb|AAC76512.1| (AE000424) putative membrane protein [Escherichia coli K12]
Length = 355
Score = 81.3 bits (199), Expect = 1e-14
Identities = 71/274 (25%), Positives = 131/274 (46%), Gaps = 24/274 (8%)
Query: 6 LDKNKAILTGG--GALLLGLIVLFYLAYRPKAEVLQGF------LEAREYSVSSKVPGRI 57
+DK+K L G L + IV ++L RP A V +GF +EA E ++SK+ GRI
Sbjct: 1 MDKSKRHLAWWVVGLLAVAAIVAWWLL-RP-AGVPEGFAVSNGRIEATEVDIASKIAGRI 58
Query: 58 EKVFVKKGDHIKKGDLVFSISSPELE-------AKLAQAEAGHKAAKALSDEVKRGSRDE 110
+ + VK+G +++G+++ + + L+ A++ +A++ AA+AL ++ R
Sbjct: 59 DTILVKEGKFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQ-----RQS 113
Query: 111 TINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTK--YNESAAY 168
+A+ + +++ + + R + L G S Q+ D+ AA ES + + A
Sbjct: 114 ETRAAQSLVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQ 173
Query: 169 QKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELS 228
A A+ + I A+ + AA + + + D + AP DG V + GE+
Sbjct: 174 VSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVL 233
Query: 229 PKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKE 262
G V+ M+DL D ++ +P + K+G E
Sbjct: 234 AAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGE 267
>ref|NP_541781.1| (NC_003318) MULTIDRUG RESISTANCE PROTEIN A [Brucella melitensis]
gb|AAL54045.1| (AE009714) MULTIDRUG RESISTANCE PROTEIN A [Brucella melitensis]
Length = 314
Score = 80.9 bits (198), Expect = 2e-14
Identities = 72/296 (24%), Positives = 133/296 (44%), Gaps = 17/296 (5%)
Query: 40 GFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKAL 99
G++E ++ ++ + VK+GD ++ G+ + ++ + +AQAEA A+A
Sbjct: 25 GYVEGEFVQLAPLQVAQVRDIAVKRGDRVEAGEPITTVEDTDARIAVAQAEAALAQAQAQ 84
Query: 100 SDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYES 159
++ G R E I ++A++QA A+ T R +DL GVA+ + D+A E
Sbjct: 85 LANLQVGKRPEEIAVLEAAVRSARAQADDAQRTLLRTRDLARRGVATQAQLDDAATQLEV 144
Query: 160 TKYNESAAYQKYKMALGGASSESKIAAKAKE-SAALGQVNEVESYLKDVK-------ATA 211
+ + +A+G K+ A+ +E AA V E+ L+ K A
Sbjct: 145 AE--AAIGQSTANLAVG------KLPARPEEIKAAENAVKSAEAQLQTAKWQRAQRTIEA 196
Query: 212 PIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPALK 271
P G +++V+ + G+++ PV+ M+ LK+ +PE+ ++ VG +
Sbjct: 197 PAAGRITDVVRNLGDIAGPSAPVLTMLPDGAVKLKVYIPEERFSDVAVGSVLSVHCDGCA 256
Query: 272 KSTKFRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPLEELENFRVGMSVLVTI 327
+ RV Y+S +F T + T Y VEA P++ + G V V +
Sbjct: 257 PGLQARVSYVSPDPEF-TPPVIYSLETRQKLVYLVEAHPVDPASPLQPGQIVDVDL 311
>ref|NP_539570.1| (NC_003317) periplasmic component of efflux system [Brucella
melitensis]
gb|AAL51834.1| (AE009507) periplasmic component of efflux system [Brucella
melitensis]
Length = 331
Score = 75.9 bits (185), Expect = 6e-13
Identities = 59/227 (25%), Positives = 103/227 (44%), Gaps = 4/227 (1%)
Query: 40 GFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKAL 99
G +EA E +S+K PGRI ++F +G +K GD++ + + +LE++ QA+A + A+
Sbjct: 18 GRVEAVEIDISTKSPGRIREIFANEGSFVKAGDVLARMDTDQLESQYRQAKAQLRRAEIG 77
Query: 100 SDEVKRGSRDETINSARDVWQAAKSQATL--AKETYKRVQDLYDNGVASLQKRDEAYAAY 157
D + A A+ +A L A+ R + L ++ S Q D+ A
Sbjct: 78 IDTAQSLVTQRQAEHAAAEATVAQREAQLDAAQRRLARSRQLSESRTVSQQVLDDDRATA 137
Query: 158 ESTKYNESAAYQKYKM--ALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDG 215
+ + AA + A GA+ + A+A AA + +E+ L+D TAP G
Sbjct: 138 QGAEAAVGAAKAQLAATDAAIGAAKAQVVDAQASVEAAKAAIAAIEADLRDATLTAPKPG 197
Query: 216 EVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKE 262
V + GE+ G V+ ++DL D + +P +G +
Sbjct: 198 RVQYRVAQPGEVLSAGGRVLNLVDLSDVSMTFFLPTAQAGRVAIGAD 244
>ref|NP_213477.1| (NC_000918) acriflavin resistance protein AcrE [Aquifex aeolicus]
pir||A70361 acriflavin resistance protein AcrE - Aquifex aeolicus
gb|AAC06871.1| (AE000702) acriflavin resistance protein AcrE [Aquifex aeolicus]
Length = 374
Score = 74.3 bits (181), Expect = 2e-12
Identities = 55/222 (24%), Positives = 101/222 (44%), Gaps = 39/222 (17%)
Query: 49 VSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSR 108
+S++V G + V VK+GD +KKG +F I +++A++
Sbjct: 72 ISTRVMGYVVDVKVKEGDFVKKGQTLFVIDPRDVKAQI-------------------NIM 112
Query: 109 DETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAY 168
+ I A+ ++AAK+ K+TY+R + L G + + D+ A Y +
Sbjct: 113 KQRIAQAQKNYEAAKAHYEAVKKTYERFKKLLKEGAITQHEFDQVEAQYLAA-------- 164
Query: 169 QKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELS 228
K L A +E ++A +A SA ++ L + AP DG V ++ G+++
Sbjct: 165 ---KAKLQAAKAEIRVAREAYNSA--------KAQLSYAEVKAPFDGYVIQKMVDRGDIA 213
Query: 229 PKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPAL 270
G P+ +++ + +++S PEKY E +G E Y+ L
Sbjct: 214 NPGMPLA-VLETRPYKVEVSFPEKYFGEINIGDTLEVYVEKL 254
>ref|NP_404258.1| (NC_003143) putative HlyD family secretion protein [Yersinia
pestis]
emb|CAC89473.1| (AJ414143) putative HlyD family secretion protein [Yersinia pestis]
Length = 349
Score = 73.9 bits (180), Expect = 2e-12
Identities = 72/273 (26%), Positives = 120/273 (43%), Gaps = 19/273 (6%)
Query: 8 KNKAILTGGGALLLGLIVLFYLAYR-----PKAEVLQGFLEAREYSVSSKVPGRIEKVFV 62
K + L G +++ + +L+ R P +E + L A ++S VPGRI + V
Sbjct: 10 KRQLALIVAGVIIIAAAISGWLSVRQTTLNPLSEDAE--LGASVVHIASSVPGRIISINV 67
Query: 63 KKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAA 122
++ +++GDL+FSI ++ QA+A K A+A D +R E N+A Q
Sbjct: 68 EENSKVRRGDLLFSIEPDLYRLQVEQAQAELKMAEATHDTQQRTVVAERSNAAITNEQIV 127
Query: 123 KSQAT--LAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQK----YKMALG 176
++QA LA +T R+Q L G + Q+ D+A A + + A ++ +
Sbjct: 128 RAQANLKLATQTLARLQPLRPKGYVTAQQVDDAATAKHDAEVSLKQALKQSVAAEALVSS 187
Query: 177 GASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVL 236
ASSE+ + A+ A E L + + AP DG V + +S GE +
Sbjct: 188 TASSEALVVARRAALAI------AERELANTQIHAPNDGRVVGLTVSAGEFVAPDQAIFT 241
Query: 237 MIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPA 269
+I+ + E L KVG Y+ A
Sbjct: 242 LINTEHWHASAFFRETELKHIKVGDCATVYVMA 274
>ref|NP_108370.1| (NC_002678) efflux pump protein FarA [Mesorhizobium loti]
dbj|BAB53831.1| (AP003013) efflux pump protein; FarA [Mesorhizobium loti]
Length = 360
Score = 73.6 bits (179), Expect = 3e-12
Identities = 75/303 (24%), Positives = 120/303 (38%), Gaps = 29/303 (9%)
Query: 42 LEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSD 101
L+ + S++S GRI +V + +K+GDL+F+I LAQA+A AA+ L+
Sbjct: 48 LQQAKVSIASDTAGRIVQVAITDHQMVKQGDLLFTIDPEPYRIALAQADAAVAAAR-LNV 106
Query: 102 EVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTK 161
E R + +++ + +A S+ A+ Y R DL G+ + D+A + K
Sbjct: 107 EQLRAAYSQSMAQEK----SASSEVDYAQSQYDRAADLAQKGINAKSSLDQARNDLDKAK 162
Query: 162 YNESAAYQ---KYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVS 218
+ A Q K ALGG + + + AAL ++ L AP DG +S
Sbjct: 163 QQVAVAQQGIISAKAALGG-NPDIETDKHPTVMAALAARDKAAYDLARTTVKAPADGVIS 221
Query: 219 NV-LLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFK------------VGKEFEG 265
G+ G P+ +++ D+W+ + E L K GK FE
Sbjct: 222 QASSFKVGQFVGSGTPLFSLVESDDTWIDANFKETQLTNMKPGQKAEIVVDTYPGKTFEA 281
Query: 266 YIPALKKSTKFRVKYLSVMGDFATW-KATNNSNTYDMKSYEVEAIPLEELENFRVGMSVL 324
+ A+ T L W K T +E + R GMS
Sbjct: 282 TVKAIGAGTGAEFSLLPAQNATGNWVKVTQRI------PVRLELTDPDAKMALRTGMSAS 335
Query: 325 VTI 327
VT+
Sbjct: 336 VTV 338
>ref|NP_541771.1| (NC_003318) Multidrug resistance efflux pump [Brucella melitensis]
gb|AAL54035.1| (AE009713) Multidrug resistance efflux pump [Brucella melitensis]
Length = 325
Score = 70.9 bits (172), Expect = 2e-11
Identities = 83/300 (27%), Positives = 126/300 (41%), Gaps = 31/300 (10%)
Query: 49 VSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEA---GHKAAKALSDEVKR 105
+S +V G I KV V + +KKGDL+F I S + KL QA A KAA A S++ +R
Sbjct: 28 MSPQVSGYITKVNVTDYEQVKKGDLLFEIDSRSYQQKLDQALAALDSKKAALANSEQSQR 87
Query: 106 GSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNES 165
S + TI + AK+ +AK RV L GV + D A+
Sbjct: 88 -SAEATIKAREAQISGAKAALEVAKANTVRVDALLPRGVTTQSSADTAH----GNMLQAQ 142
Query: 166 AAYQKYKMALGGASSESKIAAKAKESA------ALGQVNEVESYLKDVKATAPIDGEVSN 219
AA + + AL A + + A+E A V L++ K AP DG++
Sbjct: 143 AAVDQAEAALAVAKEDLRTIIVAREGLNADLHNAEAAVALARIDLQNTKILAPRDGKLGE 202
Query: 220 VLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGK------------EFEGYI 267
V + G+ G +V ++ W+ + E L KVG+ E +G+I
Sbjct: 203 VGVRLGQYVTAGTQLVSLVPAV-KWIMANFKETQLYGMKVGQPVTLTVDALRHAELKGHI 261
Query: 268 PALKKSTKFRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPLEELENFRVGMSVLVTI 327
A +T ++ + D AT T + ++ E P EL GMSV+V +
Sbjct: 262 EAFSPAT--GSEFSVIKSDNATGNFTKITQRLSVRISIDEGQPDAEL--LAPGMSVVVRV 317
>sp|Q93AA7|Y873_YERPE Hypothetical membrane protein Ecs0873
gb|AAL27384.1|AF426171_15 (AF426171) putative membrane protein [Yersinia pestis]
Length = 328
Score = 70.5 bits (171), Expect = 3e-11
Identities = 73/324 (22%), Positives = 130/324 (39%), Gaps = 5/324 (1%)
Query: 6 LDKNKAILTGGGALLLGLIVLFYLAYRPKAEV---LQGFLEAREYSVSSKVPGRIEKVFV 62
+++ K I+ LL + + YR + + L G ++ R ++ +V GR+ + V
Sbjct: 1 MNRKKIIVAAVIVALLATLAYGWHYYRQQNDASLTLYGNVDIRTVNLGFRVAGRLASLAV 60
Query: 63 KKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAA 122
+GD I G + + L QA+A ++A+A +K G R+E I R
Sbjct: 61 DEGDDIHPGQTLGKLDDGPYLNALKQAQANVQSAQAQLALLKAGYREEEIAQVRSEVAQR 120
Query: 123 KSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSES 182
++ A KR Q L+ + S + + A A + N AA K L G +
Sbjct: 121 QAAFDYADNFLKRQQGLWASKAVSANELENARTARNQARANLQAAKDKLAQFLSGNRPQE 180
Query: 183 KIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKD 242
A+A + ++ + + L+D AP G V + G + V +
Sbjct: 181 IAQAEANLAQTEAELAQAQLNLQDTILLAPSAGTVLTRAVEPGTILSASNTVFTVSLTDP 240
Query: 243 SWLKISVPEKYLNEFKVGKEFEGYIPAL-KKSTKFRVKYLSVMGDFATWKATNNSNTYDM 301
W++ V E++L + G E E + K ++ ++S +F T K +
Sbjct: 241 VWVRAYVSERHLGQAIPGSEVEVFTDGRPDKPYHGKIGFVSPTAEF-TPKTVETPDLRTD 299
Query: 302 KSYEVEAIPLEELENFRVGMSVLV 325
Y + I + E+ R GM V V
Sbjct: 300 LVYRLRIIITDADESLRQGMPVTV 323
>ref|NP_542096.1| (NC_003318) MULTIDRUG RESISTANCE PROTEIN A [Brucella melitensis]
gb|AAL54360.1| (AE009743) MULTIDRUG RESISTANCE PROTEIN A [Brucella melitensis]
Length = 405
Score = 68.9 bits (167), Expect = 7e-11
Identities = 75/306 (24%), Positives = 124/306 (40%), Gaps = 40/306 (13%)
Query: 48 SVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGS 107
S++ KV G IE + V +K GD++F + + + L +A A K +
Sbjct: 103 SIAPKVTGYIENIPVAANQQVKAGDVIFQFDAGDYQIALDEANA------------KLAT 150
Query: 108 RDET---INSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNE 164
+ ET I + D +AA QA ++ K V + +A +QK E +S N
Sbjct: 151 QKETLIRIQAQTDAAKAALLQANADQQAAKAVLLNAQSTMARVQKLHETRFVAQSELDNA 210
Query: 165 SAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKAT-------------- 210
+A + + L G ++ +AKA S Q NE S K ++
Sbjct: 211 QSALDQARARLAGVDAQIA-SAKANISVLEAQYNEAASSTKSLELARDKAARDLSFTSLR 269
Query: 211 APIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPAL 270
AP DG + N+ G+L G + ++ + ++ + E L KVG+ Y+ A+
Sbjct: 270 APFDGVIGNLSGKKGDLVAPGQKIAALVPVDQLYIDANFKETQLAHIKVGETAHIYVDAI 329
Query: 271 KKSTKFRVKYLSVM----GDFATWKATNNSNTYDMKSYEVE---AIPLEELEN--FRVGM 321
TKF K S+ F+ N + + V IP E E+ R G+
Sbjct: 330 -DGTKFDGKVASIAPASGAVFSLLPPENATGNFTKVVQRVPVRITIPKEAFESGKIRAGL 388
Query: 322 SVLVTI 327
SV+V +
Sbjct: 389 SVIVDV 394
>ref|NP_231296.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||E82172 conserved hypothetical protein VC1659 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94810.1| (AE004244) conserved hypothetical protein [Vibrio cholerae]
Length = 315
Score = 68.6 bits (166), Expect = 1e-10
Identities = 63/275 (22%), Positives = 124/275 (44%), Gaps = 2/275 (0%)
Query: 18 ALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSI 77
A LL L++ A P + G LE + S+ I ++ + +G+H+K GD++ +
Sbjct: 8 ASLLALLLSACSAENPPQAL--GTLERDRITFSATSNEIIRELPIAEGEHVKVGDVLVKL 65
Query: 78 SSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQ 137
S L QA A A+A +++ G R E I A+ A++Q A+ T R
Sbjct: 66 DSQIQTTLLTQALAQQAKAQASLNKLTNGERPEDIAVAQARVAKARAQHKEAELTLNRKA 125
Query: 138 DLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQV 197
+L + S + D A +A +S + ++A++++ GA E AKA+ + A V
Sbjct: 126 ELVAKQLISQSEVDAARSARDSAQAELASAHEEFTKLTAGARIEDIEQAKAELAVAQANV 185
Query: 198 NEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEF 257
+ L ++ A DG + ++ GE V ++ + + ++ VP + F
Sbjct: 186 TLQQQKLDELTILATRDGILDSLPYHLGERVANNAVVAIVQADRLPYARVYVPATHRAAF 245
Query: 258 KVGKEFEGYIPALKKSTKFRVKYLSVMGDFATWKA 292
VG+ ++ +K + ++++++ F + A
Sbjct: 246 VVGQTVTVHVDGIKDQYQGKIRWVANEPSFTPYYA 280
>ref|NP_437946.1| (NC_003078) putative protein secretion protein, HlyD family,
similar to E. coli EmrK [Sinorhizobium meliloti]
emb|CAC49806.1| (AL603647) putative protein secretion protein, HlyD family, similar
to E. coli EmrK [Sinorhizobium meliloti]
Length = 365
Score = 67.8 bits (164), Expect = 2e-10
Identities = 65/260 (25%), Positives = 117/260 (45%), Gaps = 19/260 (7%)
Query: 16 GGALLLGLIVLFYLAYR-----PKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKK 70
G AL LG +V+ + A ++ S++ KV G + V V+ ++
Sbjct: 32 GLALCLGAVVVVVAGWTWARESGAASTDNAYVRGDVTSLAPKVAGYVTAVEVEDNQAVRA 91
Query: 71 GDLVFSISSPELEAKLAQAEAGHKAAKA--LSDEVKRGSRDETINSARDVWQAAKSQATL 128
GD++F I + AKLAQA A +AA+A + + + + I A ++ ++ L
Sbjct: 92 GDVLFRIDDRDYRAKLAQAVANVEAAEARLTNVDAEMALQHALIRQAEAQRRSVVAELNL 151
Query: 129 AKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAA-----YQKYKMALGGASSESK 183
A + Y R ++L + S DE+ AA + N AA Q+ ++A+ A E+
Sbjct: 152 AAKAYDRRRELIRSETISQAHVDESDAAKSRAEANVLAASATVEAQQQRIAVLAAQREAA 211
Query: 184 IAAKAKESAA--LGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLK 241
+AA A+ AA L ++ L+ AP+ G + N + G L G ++ ++ L
Sbjct: 212 VAAVAQAEAARDLAGID-----LESTVVRAPVGGVIGNRQVRVGRLVAPGASLLDIVPLD 266
Query: 242 DSWLKISVPEKYLNEFKVGK 261
+ W+ + E L + G+
Sbjct: 267 NVWIVANFKETQLEHIRPGQ 286
>gb|AAL95701.1|AF360362_3 (AF360362) TrpB [Pseudomonas putida]
Length = 353
Score = 67.8 bits (164), Expect = 2e-10
Identities = 76/331 (22%), Positives = 141/331 (41%), Gaps = 30/331 (9%)
Query: 18 ALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSI 77
A+L G++ + + ++ A V+ KV G I++V V+ + G L+ +I
Sbjct: 17 AVLAGIVGPWMFGSDHRQSTNDAYVSADYTVVAPKVAGFIKQVLVEDNQQVTAGQLLATI 76
Query: 78 SSPELEAKLAQAEAGHKAAKALSDEVKRG--SRDETINSARDVWQAAKSQATLAKETYKR 135
+ + +A L A+A A+A S + + +D I A +AA+++ A R
Sbjct: 77 DARDYQAALDAAQAQLLVAQAQSADARATLERQDALIAQAEAAVKAAQAEVAFADHEVNR 136
Query: 136 VQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALG 195
L + G ++Q +A +A + + + A A A+ + KA+ ++A G
Sbjct: 137 YSRLAEQGAGTVQNAQQARSAVDQARARLANA-----QAARVAARKQVDILKAQVASADG 191
Query: 196 QVNEVESYLKDV-------KATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKIS 248
Q+ E+ L+ + TAP+DG V L G G ++ ++ L+ +++ +
Sbjct: 192 QLKRAEAGLEKAQLDLSYTRITAPVDGMVGERALRVGAYVNPGARLLSVVPLQQAYVVGN 251
Query: 249 VPEKYLNEFK------------VGKEFEGYIPALKKSTKFRVKYLSVMGDFATWKATNNS 296
E L + G+ +G++ ++ +T V + +V D AT T
Sbjct: 252 FQETQLTHVQPGQPVRISVDTFSGETLQGHVQSIAPAT--GVTFAAVKPDNATGNFTKVV 309
Query: 297 NTYDMKSYEVEAIPLEELENFRVGMSVLVTI 327
+K + PL L RVGMSV TI
Sbjct: 310 QRIPVKIVLDDGQPL--LTRLRVGMSVEATI 338
>ref|NP_418506.1| (NC_000913) putative membrane protein [Escherichia coli K12]
sp|P32716|YJCR_ECOLI Hypothetical protein yjcR
pir||A65217 hypothetical 36.9 kD protein in fdhF-phnP intergenic region -
Escherichia coli (strain K-12)
gb|AAC43176.1| (U00006) similar to E. coli multidrug resistance protein A
[Escherichia coli]
gb|AAD13465.1| (AE000481) putative membrane protein [Escherichia coli K12]
Length = 343
Score = 67.4 bits (163), Expect = 2e-10
Identities = 65/272 (23%), Positives = 117/272 (42%), Gaps = 30/272 (11%)
Query: 21 LGLIVLFYLAYRPKA--EVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSIS 78
L L+ L ++ +R + + A V +V GRI ++ V +K+GDL+F I
Sbjct: 21 LALVALVFVIWRVDSAPSTNDAYASADTIDVVPEVSGRIVELAVTDNQAVKQGDLLFRID 80
Query: 79 SPELEAKLAQAEAGHKAAKALSDEVKRGSRD--------ETINSARDVWQAAKSQATLAK 130
EA LA+AEA + AL ++ R +++N+ + +AA QAT
Sbjct: 81 PRPYEANLAKAEA---SLAALDKQIMLTQRSVDAQQFGADSVNATVEKARAAAKQAT--- 134
Query: 131 ETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKE 190
+T +R + L G S + D A A + + + +A + + A S A A+
Sbjct: 135 DTLRRTEPLLKEGFVSAEDVDRARTAQRAAEADLNAVLLQAQSAASAVSGVD--ALVAQR 192
Query: 191 SAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVP 250
+A + + +L+ AP DG V ++ S G+ + P+ +ID + ++ +
Sbjct: 193 AAVEADIALTKLHLEMATVRAPFDGRVISLKTSVGQFASAMRPIFTLIDTRHWYVIANFR 252
Query: 251 EKYLNEFK------------VGKEFEGYIPAL 270
E L + GK FEG + ++
Sbjct: 253 ETDLKNIRSGTPATIRLMSDSGKTFEGKVDSI 284
>ref|NP_661011.1| (NC_002932) multidrug resistance protein A [Chlorobium tepidum TLS]
gb|AAM71353.1| (AE012789) multidrug resistance protein A [Chlorobium tepidum TLS]
Length = 330
Score = 67.4 bits (163), Expect = 2e-10
Identities = 60/240 (25%), Positives = 96/240 (40%), Gaps = 36/240 (15%)
Query: 47 YSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRG 106
Y V +VPG++ +V +KKGD++ + + + K AEA A+A K
Sbjct: 65 YPVIPRVPGKVVEVLANDNQMVKKGDVLIRLDPSDYQIKRDMAEAQLLKARAAVSGAKA- 123
Query: 107 SRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESA 166
D+ AA +Q LA + +R Q+L V S + D A A + +A
Sbjct: 124 ----------DIIAAAAAQIKLAADL-RRSQNLQKQDVISRAELDAATAGATAASAQHAA 172
Query: 167 AYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGE 226
A YK AL A+ A ++ E L TAP DG+VS + G+
Sbjct: 173 AGDNYKAAL------------AQAKLAEAELKNAELQLSWTTITAPADGKVSKKNVQPGQ 220
Query: 227 LSPKGFPVVLMIDLKDSWLKISVPEKYLNEFK------------VGKEFEGYIPALKKST 274
G ++ ++ D W+ + E L + GKE +G+I ++ T
Sbjct: 221 YVTPGQQLIAIVGSGDLWVVANFKETQLEHMRPGQKVIIKVDAFPGKELKGHIDSISAGT 280
>sp|Q9L9D4|YBHG_THIFE Hypothetical protein in asrC 5'region (ORF1)
gb|AAF69246.1|AF173880_9 (AF173880) unknown [Acidithiobacillus ferrooxidans]
Length = 338
Score = 67.0 bits (162), Expect = 3e-10
Identities = 75/337 (22%), Positives = 132/337 (38%), Gaps = 31/337 (9%)
Query: 8 KNKAILTGGGALLLGLIVLFYLAYR---PKAEVLQGFLEAREYSVSSKVPGRIEKVFVKK 64
K +A+ ++ G + ++L+ K + G ++ R+ + GR+ + V++
Sbjct: 6 KKRALALVVVLIVAGAVAYYFLSRHHAPEKTVTIYGNIDIRQVQAAFDDNGRLLDLRVQE 65
Query: 65 GDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKS 124
GD +KKG L+ + + + + A R + S R + A +
Sbjct: 66 GDRVKKGQLLADLDPVRFQDAVDKDAAVWPRKSRCWRACWRVPVRK--KSPRPGPKPAAA 123
Query: 125 QATL--AKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSES 182
QATL A+ T++R Q L Q D A AA ++ + N A Q +A+ G E
Sbjct: 124 QATLSNAEITWQRQQALAARQYVPKQSLDNAAAALKTARANLDRAQQALTLAIKGPRKED 183
Query: 183 KIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKD 242
AA+ + A ++ L D + AP DG V + +L G++ PV +
Sbjct: 184 IAAARQQLQADKAGLSLARRELTDTRLYAPEDGVVQDRILEPGDMVSPQTPVFTLALDNP 243
Query: 243 SWLKISVPEKYLNEFKV------------GKEFEGYIPALKKSTKFRVKYLSVMGDFATW 290
W++ +PEK L + ++ GK F G++ + + +F T
Sbjct: 244 VWVRAYLPEKALGQVRLGMKATISSDSFPGKSFPGWVGFISPTAEF------------TP 291
Query: 291 KATNNSNTYDMKSYEVEAIPLEELENFRVGMSVLVTI 327
K + Y V R+GM V V I
Sbjct: 292 KTVQTTELRTELVYRVRVYACNPQHRLRLGMPVTVHI 328
>ref|NP_290715.1| (NC_002655) putative membrane protein [Escherichia coli O157:H7
EDL933]
ref|NP_313091.1| (NC_002695) putative membrane protein [Escherichia coli O157:H7]
gb|AAG59280.1|AE005641_5 (AE005641) putative membrane protein [Escherichia coli O157:H7
EDL933]
dbj|BAB38487.1| (AP002568) putative membrane protein [Escherichia coli O157:H7]
Length = 343
Score = 67.0 bits (162), Expect = 3e-10
Identities = 64/272 (23%), Positives = 118/272 (42%), Gaps = 30/272 (11%)
Query: 21 LGLIVLFYLAYRPKA--EVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSIS 78
L L+ L ++ +R + ++ A V +V GRI ++ V +K+GDL+F I
Sbjct: 21 LALVALVFVIWRVDSAPSTNDAYVSADTIDVVPEVSGRIVELAVTDNQAVKQGDLLFRID 80
Query: 79 SPELEAKLAQAEAGHKAAKALSDEVKRGSRD--------ETINSARDVWQAAKSQATLAK 130
EA LA++EA + AL ++ R +++N+ + +AA QAT
Sbjct: 81 PRPYEANLAKSEA---SLAALDKQIMLTQRSVDAQQFGADSVNATVEKARAAAKQAT--- 134
Query: 131 ETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKE 190
+T +R + L G S + D A A + + + +A + + A S A A+
Sbjct: 135 DTLRRTEPLLKEGFVSAEDVDRARTAQRAAEADLNAVLLQAQSAASAVSGVD--ALVAQR 192
Query: 191 SAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVP 250
+A + + +L+ AP DG V ++ S G+ + P+ +ID + ++ +
Sbjct: 193 AAVEADIALTKLHLEMATVRAPFDGRVISLKTSVGQFASAMRPIFTLIDTRHWYVIANFR 252
Query: 251 EKYLNEFK------------VGKEFEGYIPAL 270
E L + GK FEG + ++
Sbjct: 253 ETDLKNIRSGTPATIRLMSDSGKTFEGKVDSI 284
>ref|NP_273367.1| (NC_003112) fatty acid efflux system protein [Neisseria
meningitidis MC58]
pir||A81212 fatty acid efflux system protein NMB0318 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40763.1| (AE002389) fatty acid efflux system protein [Neisseria meningitidis
MC58]
Length = 384
Score = 66.6 bits (161), Expect = 4e-10
Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 9/240 (3%)
Query: 27 FYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKL 86
F+L ++ + E ++ R V+ + G + KV D +KKGD++ +
Sbjct: 39 FFLWWQHEEETEDAYVAGRVVQVTPQKGGTVRKVLHDDTDAVKKGDVLAVLDDDN----- 93
Query: 87 AQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAK--ETYKRVQDLYDNGV 144
A +A L V++ R S Q A +A LA+ + +R L ++G
Sbjct: 94 -DVLAYERAKNELVQAVRQNRRQNAATSQAGA-QVALRRADLARAQDDLRRRSALAESGA 151
Query: 145 ASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYL 204
S ++ A AA + AA + A + + + A+G++ + L
Sbjct: 152 VSAEELAHARAAVSQAQAAVKAALAEESSARAALGGQVSLREQPAVQTAIGRLKDAWLNL 211
Query: 205 KDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFE 264
+ + AP DG+V+ + G+ G P++ ++ L D W+ + E L K+G+ E
Sbjct: 212 QRTQIRAPADGQVAKRSVQVGQQVAAGAPLMAVVPLSDVWVDANFKETQLRHMKIGQPAE 271
>gb|AAD54073.1| (AF132909) efflux pump protein FarA [Neisseria gonorrhoeae]
Length = 394
Score = 66.6 bits (161), Expect = 4e-10
Identities = 52/240 (21%), Positives = 100/240 (41%), Gaps = 9/240 (3%)
Query: 27 FYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKL 86
F+L ++ + E ++ R V+ + G + KV D +KKGD++ +
Sbjct: 49 FFLWWQHEEETEDAYVAGRVVQVTPQKGGTVRKVLHDDTDAVKKGDVLAVLDDDN----- 103
Query: 87 AQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAK--ETYKRVQDLYDNGV 144
A +A L V++ R S Q A +A LA+ + +R L ++G
Sbjct: 104 -DVLAYERAKNELVQAVRQNRRQNAATSQAGA-QVALRRADLARAQDDLRRRSALAESGA 161
Query: 145 ASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYL 204
S ++ A A + AA + A + + + + A+G++ + L
Sbjct: 162 VSAEELAHARTAVSQAQAAVKAALAEESSARAALGGDVSLREQPEVQTAIGRLKDAWLNL 221
Query: 205 KDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFE 264
+ + AP DG+V+ + G+ G P++ ++ L D W+ + E L K+G+ E
Sbjct: 222 RRTQVRAPADGQVAKRSVQVGQQVAAGAPLMAVVPLSDVWVDANFKETQLRHMKIGQPAE 281
>ref|NP_284862.1| (NC_003116) multidrug resistance translocase [Neisseria
meningitidis Z2491]
pir||F81789 multidrug resistance translocase NMA2169 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB85381.1| (AL162758) multidrug resistance translocase [Neisseria meningitidis
Z2491]
Length = 394
Score = 66.6 bits (161), Expect = 4e-10
Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 9/240 (3%)
Query: 27 FYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKL 86
F+L ++ + E ++ R V+ + G + KV D +KKGD++ +
Sbjct: 49 FFLWWQHEEETEDAYVAGRVVQVTPQKGGTVRKVLHDDTDAVKKGDVLAVLDDDN----- 103
Query: 87 AQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAK--ETYKRVQDLYDNGV 144
A +A L V++ R S Q A +A LA+ + +R L ++G
Sbjct: 104 -DVLAYERAKNELVQAVRQNRRQNAATSQAGA-QVALRRADLARAQDDLRRRSALAESGA 161
Query: 145 ASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYL 204
S ++ A AA + AA + A + + + A+G++ + L
Sbjct: 162 VSAEELAHARAAVSQAQAAVKAALAEESSARAALGGQVSLREQPAVQTAIGRLKDAWLNL 221
Query: 205 KDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFE 264
+ + AP DG+V+ + G+ G P++ ++ L D W+ + E L K+G+ E
Sbjct: 222 QRTQIRAPADGQVAKRSVQVGQQVAAGAPLMAVVPLSDVWVDANFKETQLRHMKIGQPAE 281
>ref|NP_489333.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB76992.1| (AP003599) ORF_ID:alr5293~hypothetical protein [Nostoc sp. PCC
7120]
Length = 471
Score = 65.9 bits (159), Expect = 6e-10
Identities = 61/235 (25%), Positives = 102/235 (42%), Gaps = 20/235 (8%)
Query: 45 REYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVK 104
R S+ S+V GR+ + + GD +K+G V + L L QAEA AL EV
Sbjct: 105 RTISLRSQVEGRLLALNLDVGDTVKRGQNVGQLDDIILSTNLKQAEA---ELAALQSEVA 161
Query: 105 RGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNE 164
R + +++AR + A+ + A+ +R + L+ G S Q A E +
Sbjct: 162 RATTQ--VSNARAQVERARLEVVQAEADAQRQERLFKEGAISEQ-------AAEQARTEA 212
Query: 165 SAAYQKYKMALGGASSESKIAAKAK-----ESAALGQVNEVESYLKDVKATAPIDGEVSN 219
A Q + A +E + A AK + A + Q E SY + T+P++G ++
Sbjct: 213 KTATQALRAATEQVRTEEQAVAAAKGRVFAQQAVVAQTKERRSY---TRLTSPLNGVITE 269
Query: 220 VLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPALKKST 274
+ G L G ++ + DL + + V E L E +VG+ + + A T
Sbjct: 270 RVTEPGNLLQAGGEILKIADLSRIKVVVQVSELELGEIQVGQSVQVRLDAFPDQT 324
>ref|NP_485542.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB77867.1| (AP003586) ORF_ID:alr1501~hypothetical protein [Nostoc sp. PCC
7120]
Length = 434
Score = 63.2 bits (152), Expect = 4e-09
Identities = 74/335 (22%), Positives = 138/335 (41%), Gaps = 73/335 (21%)
Query: 26 LFYLAYRPK-AEVLQ--GFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPEL 82
++Y +RP+ A+++Q G +E E VS+K GR+E+V V++GD +KKG L+ +S E+
Sbjct: 58 VWYGFFRPQPAKMIQFNGRIEGYETDVSTKGIGRVEEVTVREGDTVKKGQLLVRLSDEEV 117
Query: 83 EAKLAQAEAGHKAAK-----------ALSDEVKRGSRDETINSARDVWQAAKSQATLA-- 129
+++L+ A A AAK L+D++ + + + + A+ QA ++
Sbjct: 118 QSELSAATAQVNAAKQREAYARLQISILADQLADANLNLQQSQGDTQGKVAEGQALVSTA 177
Query: 130 --------------------------------------KETYKRVQDLYDNGVASLQKRD 151
K+ Y Q Y+ A+LQ R
Sbjct: 178 KAVVKQEQARVLEARALVEQARVDSDRYAHLAIEGAETKQRYDVAQTFYNTAKAALQSRL 237
Query: 152 EAY-AAYESTKYNESAAYQKYKMALGGASSESKIA-------------AKAKESAALGQV 197
A AA + + Q L ++ ++ A A+ Q
Sbjct: 238 AAVEAAQTAVNIAQGKLTQAQTTTLNPRRQQTNVSRFETQAQQARNTIAAAQADVKTAQA 297
Query: 198 NE--VESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLN 255
N+ ++S L ++ +PIDG V+ + G + P++ ++DL +L+ +P +
Sbjct: 298 NQQLIQSRLNNLTVKSPIDGVVTTRSVEPGTVVLPSRPLLRVVDLSQVYLRGFIPGGQIA 357
Query: 256 EFKVGKEFEGYI---PALKKSTKFRVKYLSVMGDF 287
+ +VG+ Y+ P +KS K V + F
Sbjct: 358 QVRVGQLANVYLDNDPKHQKSFKATVTAIDSQASF 392
>ref|NP_359964.1| (NC_003103) multidrug resistance protein A [Rickettsia conorii]
gb|AAL02865.1| (AE008598) multidrug resistance protein A [Rickettsia conorii]
Length = 355
Score = 62.8 bits (151), Expect = 5e-09
Identities = 77/337 (22%), Positives = 139/337 (40%), Gaps = 40/337 (11%)
Query: 19 LLLGLIVLFYLAYR-----PKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDL 73
+++ LI+ YL YR +++A +VS++V G + K+FV + KGDL
Sbjct: 27 IIIALIIFIYLGYRIYVWANTQSTDNAYIDADISNVSAEVSGVLTKLFVTDNTKVNKGDL 86
Query: 74 VFSISSPELEAKLAQAEAGHKAAKALSD--EVKRGSRDETINSARDVWQAAKSQATLAKE 131
+ I + +AKLA EA +A + E K ++ A + + K +
Sbjct: 87 IGEIDDRDYKAKLAALEASIEACIKNIEIIEQKISIGQISLEQAAEKLKLNKISFDIVAT 146
Query: 132 TYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKI--AAKAK 189
+ RVQ+L AS + D++ AY+ K + Y++ ++ L + ++ KA
Sbjct: 147 DFMRVQELNKAKFASSKTLDDSKNAYQKAKTD----YKQAQLDLDISKQHLQLLELEKAA 202
Query: 190 ESAALGQVNE----VESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWL 245
E L ++ E + L++ K A + G N L G G + ++ ++
Sbjct: 203 EQEKLKELTENKKVILRSLQNTKLIAMVPGIFGNSSLEVGNYIVPGRALFSIVQDNTMYI 262
Query: 246 KISVPEKYLNEFKVGKEFEGYIPALKKST---KFR-------VKYLSVMGDFATWKATNN 295
+ + E + +FK G + + AL K K R K+ + D AT T +
Sbjct: 263 QANFKETQIQKFKSGMKVKIEFDALPKKVIYGKIRNIAPATGSKFSLIPPDHATGNFTKS 322
Query: 296 SN----TYDMKSYEVEAIPLEELENFRVGMSVLVTIK 328
D +S +P GMS +V+I+
Sbjct: 323 VQRVPVLIDFESPNANLVP---------GMSAIVSIR 350
>ref|NP_638835.1| (NC_003902) multidrug resistance efflux pump [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gb|AAM42759.1| (AE012468) multidrug resistance efflux pump [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 390
Score = 62.4 bits (150), Expect = 7e-09
Identities = 75/336 (22%), Positives = 141/336 (41%), Gaps = 24/336 (7%)
Query: 12 ILTGGGALLLGLIVLFYLAYRPK-----AEVLQGFLEAREYSVSSKVPGRIEKVFVKKGD 66
+L GG L+G+ ++ Y P + + ++ +V G + +V V+
Sbjct: 52 VLGFGGLALIGVALVLYAWRLPPFTSAVERTENAMVHGQVTVIAPQVSGYVTQVPVQDFA 111
Query: 67 HIKKGDLVFSISSPELEAKLAQAEAGHKAAKA--LSDEVKRGSRDETINSARDVWQAAKS 124
H+++G L+ I L QA+A + +A + E +R S + TI R + ++
Sbjct: 112 HVRRGQLLAKIDDRIYAQHLEQAKAQLQTTQANLANWEQQRHSAEATIAEQRATLSSNQA 171
Query: 125 QATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASS--ES 182
Q + Y R Q L + + S Q RD A+AA + A + A A S +
Sbjct: 172 QRDRTRSAYARAQQLANQKLVSEQDRDTAFAARAQADAGVAQARAAVQAAEENARSVTVN 231
Query: 183 KIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKD 242
+ A +A + A V + L + + AP DG++ + + G G ++ ++
Sbjct: 232 RAALEAAVANAQAAVQLAQINLDNTRILAPRDGQLGQLGVRQGAYVTNGTQLMALVP-DT 290
Query: 243 SWLKISVPEKYLNEFKVGKEFEGYIPALKKS-TKFRVKYLS--VMGDFATWKATNNSNTY 299
W+ + E + +VG+ + AL + + RV+ +S +F+ +A N + +
Sbjct: 291 LWVVANFKETQMANVRVGQRASFTVDALANARLQGRVQEISPAAGSEFSVLRADNATGNF 350
Query: 300 DMKSYEVEAIPLE--------ELENFRVGMSVLVTI 327
+ + IPL + R GMSV+V I
Sbjct: 351 VKIA---QRIPLRISVDPGQPQAARLRPGMSVVVAI 383
>ref|NP_487184.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB74843.1| (AP003592) ORF_ID:all3144~hypothetical protein [Nostoc sp. PCC
7120]
Length = 439
Score = 61.6 bits (148), Expect = 1e-08
Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 14/208 (6%)
Query: 45 REYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVK 104
R ++ +V G++ ++FV+ GD I G V I + +A + +A +A+KA +
Sbjct: 93 RSVTLQPRVQGQVTQIFVRSGDAIASGAAVIQIDPRQQQAAVISNDAATQASKAQLE--- 149
Query: 105 RGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNE 164
+ + T+ S + + L ++ Y R L D G S Q +D+ + + N
Sbjct: 150 --NANATLKSLEAERLSNVADVRLNQQEYDRYASLADQGAVSRQTKDQYANRLATARANL 207
Query: 165 SAAYQKYKMALGGASSESKIAAKAKESAALGQVN--EVESYLKDVKATAPIDGEVSNVLL 222
+A + + ++ A+A++S Q N E + L+ + TAP +G V N+ +
Sbjct: 208 NAIESRIQ-------AQKASIAQAQKSVQQAQANTDEQQVQLQFYRITAPFEGTVGNIPV 260
Query: 223 SGGELSPKGFPVVLMIDLKDSWLKISVP 250
G+ P++ + + + ISVP
Sbjct: 261 KIGDFVNSSTPLLTITQNRPLEVNISVP 288
>ref|NP_422508.1| (NC_002696) HlyD family secretion protein [Caulobacter crescentus
CB15]
gb|AAK25676.1| (AE006029) HlyD family secretion protein [Caulobacter crescentus
CB15]
Length = 396
Score = 61.2 bits (147), Expect = 2e-08
Identities = 62/270 (22%), Positives = 117/270 (42%), Gaps = 6/270 (2%)
Query: 1 MSNSMLDKNKAILTGGGALLLGLI--VLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIE 58
M+ S K ++ GG A+ L+ L++L + F++A VS +V G +
Sbjct: 30 MAASEKKKLVPLIVGGVAIAAVLVGGTLWFLDKQHFESTDNAFVQADTVQVSPQVSGYVA 89
Query: 59 KVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVK-RGSRDETINSARD 117
+V V ++ G ++ I +A++ QA A AA A + + S ++ + + R
Sbjct: 90 EVLVADNQRVEPGQVLAKIDPSTFQARVDQAIANAAAADAAVRAIDDKNSLEQAVIAQRA 149
Query: 118 VW-QAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALG 176
+A++ A+ AK R L D G S QK AA + ++A +
Sbjct: 150 AGVTSAQADASRAKADLDRYNALADQGWVSQQKVQTTRAAATQSAAGVASAQAALEAEKR 209
Query: 177 GASS--ESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPV 234
A S +K A A+ +AA V + + L+ AP+ G V + G+L G +
Sbjct: 210 AAQSLGSAKAQAIAQAAAAHAAVEQAKLDLERTVIRAPVSGVVGARAVRPGQLVQPGVAL 269
Query: 235 VLMIDLKDSWLKISVPEKYLNEFKVGKEFE 264
+ ++ L +++ + E + ++G+ E
Sbjct: 270 MSVVPLGQAYVVANFKETQVARLRIGQPVE 299
>ref|NP_518284.1| (NC_003295) PROBABLE LIPOPROTEIN [Ralstonia solanacearum]
emb|CAD13691.1| (AL646057) PROBABLE LIPOPROTEIN [Ralstonia solanacearum]
Length = 311
Score = 60.8 bits (146), Expect = 2e-08
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 5/280 (1%)
Query: 33 PKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAG 92
P + QG++E V+S V GR+E + V++G + G +F + S + A QA A
Sbjct: 16 PDTQSYQGYVEGEFVYVASPVGGRLEHLGVQRGQTVSAGTPLFILESTDEAAARQQAAAQ 75
Query: 93 HKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQD--LYDNGVASLQKR 150
+AA+A ++ G R +++ R Q A++ A +RV+D + G +
Sbjct: 76 QQAAEAQLADLNLGRRVPEVDAVRA--QLAQAVAADQLSATQRVRDEAQFRAGGIPQAQL 133
Query: 151 DEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKAT 210
D + + ++ + ++A A ++ A A+ AA V + + L
Sbjct: 134 DASRSTAQTNAQRVRELTNQLRIAQLPARTDQIHAQSAQVEAARAAVAQAQWRLDQKAQK 193
Query: 211 APIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPAL 270
A G V + L GE G PVV M+ + ++ VPE + K G+
Sbjct: 194 ATQGGLVFDTLYREGEWVGAGSPVVRMLPPANVKVRFFVPEGVVGRLKPGQAVRIRCDGC 253
Query: 271 KKSTKFRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIP 310
+ Y++ ++ +NS D + VEA P
Sbjct: 254 AAEVNATISYVASEAEYTPPVIYSNSRR-DKLVFMVEARP 292
>ref|NP_354111.1| (NC_003062) AGR_C_2013p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK86896.1| (AE008038) AGR_C_2013p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 385
Score = 60.5 bits (145), Expect = 3e-08
Identities = 68/274 (24%), Positives = 118/274 (42%), Gaps = 24/274 (8%)
Query: 41 FLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALS 100
F+ ++S +V G + V VK +K+G L+ I K AQAEA KA
Sbjct: 74 FVRGYVTTMSPQVSGYVVNVPVKDYQEVKQGTLLAKIDDRIYHQKQAQAEATLDTHKAAL 133
Query: 101 DEVKRGSRDETIN-----SARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYA 155
D ++ N +A D +A+ QA LA + R +L +GV + ++EA+A
Sbjct: 134 DNSRQQENAANANIRSSEAAVDSAEASLKQAQLASD---RQDNLIKSGVGTSSLQEEAHA 190
Query: 156 AYESTKYNESAA-------YQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVK 208
A E + + S A Q + + SS A A+ + L +++ L + +
Sbjct: 191 ALEKARASLSQAKAALEVSRQDLQTIIVNRSSLQAAVANAEAAVELARID-----LANTE 245
Query: 209 ATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIP 268
AP+DG + V + G+ G ++ ++ D W+ + E L +VG+ +
Sbjct: 246 IRAPVDGRLGEVGVRTGQYVTAGTQLMAVVP-HDVWVIANFKETQLAGMQVGQPVTISVD 304
Query: 269 AL--KKSTKFRVKYLSVMG-DFATWKATNNSNTY 299
AL +K T ++ G +FA K N + +
Sbjct: 305 ALHRRKLTGHVERFSPATGSEFAVIKPDNATGNF 338
>ref|NP_531784.1| (NC_003304) secretion protein [Agrobacterium tumefaciens str. C58
(U. Washington)]
gb|AAL42100.1| (AE009072) secretion protein [Agrobacterium tumefaciens str. C58
(U. Washington)]
Length = 355
Score = 60.5 bits (145), Expect = 3e-08
Identities = 68/274 (24%), Positives = 118/274 (42%), Gaps = 24/274 (8%)
Query: 41 FLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALS 100
F+ ++S +V G + V VK +K+G L+ I K AQAEA KA
Sbjct: 44 FVRGYVTTMSPQVSGYVVNVPVKDYQEVKQGTLLAKIDDRIYHQKQAQAEATLDTHKAAL 103
Query: 101 DEVKRGSRDETIN-----SARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYA 155
D ++ N +A D +A+ QA LA + R +L +GV + ++EA+A
Sbjct: 104 DNSRQQENAANANIRSSEAAVDSAEASLKQAQLASD---RQDNLIKSGVGTSSLQEEAHA 160
Query: 156 AYESTKYNESAA-------YQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVK 208
A E + + S A Q + + SS A A+ + L +++ L + +
Sbjct: 161 ALEKARASLSQAKAALEVSRQDLQTIIVNRSSLQAAVANAEAAVELARID-----LANTE 215
Query: 209 ATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIP 268
AP+DG + V + G+ G ++ ++ D W+ + E L +VG+ +
Sbjct: 216 IRAPVDGRLGEVGVRTGQYVTAGTQLMAVVP-HDVWVIANFKETQLAGMQVGQPVTISVD 274
Query: 269 AL--KKSTKFRVKYLSVMG-DFATWKATNNSNTY 299
AL +K T ++ G +FA K N + +
Sbjct: 275 ALHRRKLTGHVERFSPATGSEFAVIKPDNATGNF 308
>ref|NP_484495.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB72409.1| (AP003582) ORF_ID:alr0451~hypothetical protein [Nostoc sp. PCC
7120]
Length = 489
Score = 59.7 bits (143), Expect = 4e-08
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 29/176 (16%)
Query: 48 SVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGS 107
++S K PG + +++V++GD +++G ++ + E+EA++AQ A A+A DE + G+
Sbjct: 78 NLSPKNPGVLAQLYVEQGDRVEQGQIIARMDVGEIEAQIAQHRANVAQAQAQLDEARAGN 137
Query: 108 RDETINS--------------------------ARDVWQAAKSQATLAKETYKRVQDLYD 141
R + I A+ AA+++ E KR Q L++
Sbjct: 138 RPQEIAQSQARLAQAQAQLAESVAGNRPQEVAKAQSQVDAAQARVNYTSEQVKRYQYLFN 197
Query: 142 NGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSE---SKIAAKAKESAAL 194
G Q D+A + +S + N + A ++ + G SE +K AA + AAL
Sbjct: 198 QGAERKQLFDQAVSEDKSARANLAEAQKQLSLLQSGTRSEVISAKEAAVTEARAAL 253
>ref|NP_485695.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB78021.1| (AP003586) ORF_ID:alr1655~hypothetical protein [Nostoc sp. PCC
7120]
Length = 510
Score = 59.7 bits (143), Expect = 4e-08
Identities = 57/231 (24%), Positives = 96/231 (40%), Gaps = 46/231 (19%)
Query: 84 AKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNG 143
AKLAQ +A L E++ G R +TI SAR + Q LA+ KR + LY+ G
Sbjct: 173 AKLAQEQA-------LLKEMQSGPRIQTIASARANVNNLQEQLELARSKSKRREALYNQG 225
Query: 144 VASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEV--- 200
+ ++ DEA S + A + L G SE A +A+ A Q+NE+
Sbjct: 226 AIAREQFDEAITDVNSQQARVKQAQSQLDELLAGTRSEVITAQQARVKQAQSQLNELLAG 285
Query: 201 ---------ESYLKDVKA--------------TAPIDGEVSNVLLSGGELSPKGFPVVLM 237
++ LK +++ AP G+VS L G G +V +
Sbjct: 286 TRSEVIEAQKAALKQLQSRLASLELDLEKSVLKAPFSGKVSQRYLDLGTAVSSGQAIVRL 345
Query: 238 IDLKDSWLKISVPEKYLNEFKVGK-------------EFEGYIPALKKSTK 275
+ ++ I +P ++ K+G+ + + ++P L K+T+
Sbjct: 346 VQVEQVKAHIGIPASLTSQIKIGEVQSIQVGQKSYRAKVDSFLPELDKATR 396
>ref|NP_249928.1| (NC_002516) probable multidrug resistance efflux pump [Pseudomonas
aeruginosa]
pir||F83490 probable multidrug resistance efflux pump PA1237 [imported] -
Pseudomonas aeruginosa (strain PAO1)
gb|AAG04626.1|AE004553_3 (AE004553) probable multidrug resistance efflux pump [Pseudomonas
aeruginosa]
Length = 383
Score = 59.7 bits (143), Expect = 4e-08
Identities = 66/298 (22%), Positives = 132/298 (44%), Gaps = 33/298 (11%)
Query: 8 KNKAILTGG--GALLLGLIVLFYLAYRPKAEVLQG----FLEAREYSVSSKVPGRIEKVF 61
+ + L GG GA+ L ++ ++ + L+G ++ A +VS++V G + +V
Sbjct: 23 RRRTWLLGGLAGAIALAALLAWWWS---SGRFLEGTDDAYVRADWVAVSAQVSGYVAEVL 79
Query: 62 VKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRD----------ET 111
V ++ GDL+ + + +L AEA AA+A + E +R + +T
Sbjct: 80 VADDADVQAGDLLLRLDPRDFRQRLRAAEAREAAAQA-ALEAQRAKLETLDRQLLEQAQT 138
Query: 112 INSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTK------YNES 165
I+ AR +AA+++ A+ ++R + L D S Q+ + A AA++ + E
Sbjct: 139 ISRARADGEAARAEWRRAETDWRRYRQLADEHATSRQRLENADAAHQRARAAARRASAEE 198
Query: 166 AAYQKYKMALGGASSESKIA-----AKAKESAALGQVNEVESYLKDVKATAPIDGEVSNV 220
+ K L E++ A A+ +E+AA ++ L D + AP G V
Sbjct: 199 GRQRAAKDVLKSRRREAEAALAQRQAELQEAAAAREL--ARHALDDTEIRAPFAGRVGQR 256
Query: 221 LLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPALKKSTKFRV 278
+ + G P++ ++ L+ +++ + E L + G+ E + + + RV
Sbjct: 257 KVRLRQYVTPGLPLLAVVPLEQAYVVANYKETQLERIRPGQPVELEVDTFGRRWRGRV 314
>ref|NP_604171.1| (NC_003454) Acriflavin resistance protein E [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL95470.1| (AE010633) Acriflavin resistance protein E [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 370
Score = 59.3 bits (142), Expect = 6e-08
Identities = 50/235 (21%), Positives = 100/235 (42%), Gaps = 52/235 (22%)
Query: 55 GRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINS 114
G ++ ++ K G+++KKG+++ +S + EA QA+A
Sbjct: 80 GTVKTIYKKNGEYVKKGEVIVKLSDAQTEADFLQAKAN---------------------- 117
Query: 115 ARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMA 174
+Q+A S +A+ Y++ + LYD + S + A+Y S + N A Y
Sbjct: 118 ----YQSATSNYNIARNNYQKFKTLYDKQLISYLEFSNYQASYTSAQGNLEVAKATY--- 170
Query: 175 LGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPV 234
+ +S SK+ A+A+ S +G + ++K+ G +++ K
Sbjct: 171 MNAQNSYSKLVARAEISGIVGNL-----FIKE-----------------GNDIAAKEVLF 208
Query: 235 VLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPALKKSTKFRVKYLSVMGDFAT 289
++ D K + + + +++ K+G E I AL K K ++ L+ + D T
Sbjct: 209 TILND-KQMQSYVGITPEAISKVKLGDEINVKIDALAKEYKAKITELNPIADSTT 262
>ref|NP_635960.1| (NC_003902) ABC transporter permease [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gb|AAM39884.1| (AE012154) ABC transporter permease [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 423
Score = 58.9 bits (141), Expect = 8e-08
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 6/201 (2%)
Query: 62 VKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETI--NSARDVW 119
V GD +K+G + I SPEL +KLAQ +A L E R + D T+ SA +
Sbjct: 97 VVAGDVVKQGQELARIDSPELRSKLAQEQA---TLAGLEAESSRAALDATLARASASKLT 153
Query: 120 QAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGAS 179
AK A +R Q YD G + +A + T + A + + GA
Sbjct: 154 DEAKIDKQAAVRDLERYQRGYDGGAVPQVELAKAQDTLKKTDIDLQHAQRDAALKGQGAD 213
Query: 180 SESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMID 239
+S+ + V EV+ + + +P DG+V V P++ ++D
Sbjct: 214 LDSR-NKRLLADRQRAVVAEVQRQVDALTLLSPFDGQVGQVQAVQHTQVAANAPILGVVD 272
Query: 240 LKDSWLKISVPEKYLNEFKVG 260
L ++I VPE + E +G
Sbjct: 273 LSKFEVEIKVPESFARELAIG 293
>ref|NP_640994.1| (NC_003919) multidrug resistance efflux pump [Xanthomonas
axonopodis pv. citri str. 306]
gb|AAM35530.1| (AE011692) multidrug resistance efflux pump [Xanthomonas axonopodis
pv. citri str. 306]
Length = 362
Score = 58.9 bits (141), Expect = 8e-08
Identities = 74/330 (22%), Positives = 141/330 (42%), Gaps = 20/330 (6%)
Query: 16 GGALLLGLIVLFYLAYR--PKAEVLQGFLEAREYS----VSSKVPGRIEKVFVKKGDHIK 69
GG L+G+ ++ Y A+R P ++ A + ++ +V G + +V V+ H+K
Sbjct: 28 GGLALIGVALVLY-AWRLPPFVSAIERTENAMVHGQITVIAPQVSGYVTQVPVQDFAHVK 86
Query: 70 KGDLVFSISSPELEAKLAQAEAGHKAAKA--LSDEVKRGSRDETINSARDVWQAAKSQAT 127
+G L+ I +L QA+A + A+A + + +R S + TI R + ++Q
Sbjct: 87 RGQLLARIDDRIYAQQLEQAKAQVQTAQANLANWDQQRHSAEATIAEQRAALSSNQAQRD 146
Query: 128 LAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGAS--SESKIA 185
+ Y R Q L + S Q RD A+AA + + A + A A + ++ A
Sbjct: 147 RTRSAYARTQQLASQQLVSEQDRDTAFAARAQAEAGVAQARAAVQAAEENARGVTVNRAA 206
Query: 186 AKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWL 245
+A + A V L + + AP DG++ + + G G ++ ++ W+
Sbjct: 207 LEAAVANAQAAVQLARINLDNTRILAPRDGQLGQLGVRQGAYVTNGTQLMSLVP-DTLWI 265
Query: 246 KISVPEKYLNEFKVGKEFEGYIPALKKSTKF-RVKYLS--VMGDFATWKATNNSNTY--- 299
+ E + ++G+ + AL + RV+ +S +F+ A N + +
Sbjct: 266 VANFKETQMARIRIGQRASFTVDALDNARLHGRVQDISPAAGSEFSVLPADNATGNFVKI 325
Query: 300 -DMKSYEVEAIPLEEL-ENFRVGMSVLVTI 327
+ P + L R GMSV+V +
Sbjct: 326 AQRIPLRISVDPDQPLAPRLRPGMSVVVAV 355
>ref|NP_641780.1| (NC_003919) multidrug resistance efflux pump [Xanthomonas
axonopodis pv. citri str. 306]
gb|AAM36316.1| (AE011776) multidrug resistance efflux pump [Xanthomonas axonopodis
pv. citri str. 306]
Length = 397
Score = 58.5 bits (140), Expect = 1e-07
Identities = 53/251 (21%), Positives = 109/251 (43%), Gaps = 18/251 (7%)
Query: 20 LLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISS 79
++GL+V ++L R + +++ + ++ V G + + + G +++G L+ +
Sbjct: 34 IIGLVVWYFLVGRWHEDTDDAYVQGNQVQITPMVGGTVVSIGAEDGMRVERGQLLVQLDP 93
Query: 80 PELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDL 139
+ E L QAEA AK + RG T+ A+ A + A+ + R +DL
Sbjct: 94 ADTEVALQQAEAN--LAKTVRQV--RGLY-RTVEGAQAELSAREVTLRSARSDFARRKDL 148
Query: 140 YDNGVASLQK----RDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALG 195
G S ++ RDE AA + + + + + +S +A + A
Sbjct: 149 AATGAISNEELAHARDELAAAEAAVSGSRESLERNRALV-----DDSAVANQPDVQTAAA 203
Query: 196 QVNEVESYLKDVKA--TAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKY 253
Q+ + +YL + AP+ G V+ G+ G ++ ++ L+ W++ + E
Sbjct: 204 QLRQ--AYLNHARTGVVAPVSGYVARRSAQVGQRVQPGSVLMAVVPLEQVWVEANFKETQ 261
Query: 254 LNEFKVGKEFE 264
L ++G+E E
Sbjct: 262 LKHMRLGQEVE 272
>ref|NP_406737.1| (NC_003143) multidrug resistance protein A [Yersinia pestis]
emb|CAC92501.1| (AJ414156) multidrug resistance protein A [Yersinia pestis]
Length = 390
Score = 57.8 bits (138), Expect = 2e-07
Identities = 57/249 (22%), Positives = 106/249 (41%), Gaps = 16/249 (6%)
Query: 19 LLLGLIVLFY--LAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFS 76
+++G+ L Y L R E ++ + + S+VPG + V + D +K GD++ +
Sbjct: 32 IMIGVAYLIYWFLVLRHHQETDNAYISGNQVQIMSQVPGSVVSVHFENTDFVKSGDVLVT 91
Query: 77 ISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQA----AKSQATLAKET 132
+ + E QA+ AL++ V R + INS + +QA K++ + A+
Sbjct: 92 LDPTDAEQAFEQAKT------ALANSV-RQTHQLIINSKQ--YQANIALKKTELSQAQND 142
Query: 133 YKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESA 192
KR L V ++ A A E+ + + A Q+Y + A E A
Sbjct: 143 LKRRVVLGAAAVIGREELQHARDAVEAAQASLDMAVQQYNANQALVLNTPLEKQPAIEQA 202
Query: 193 ALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEK 252
A ++ + L+ K +PI G VS + G G P++ ++ W+ + E
Sbjct: 203 A-AKMRDAWLTLQRTKVVSPISGYVSRRSVQVGAEISSGTPLMAVVPADQLWIDANFKET 261
Query: 253 YLNEFKVGK 261
L ++G+
Sbjct: 262 QLANMRIGQ 270
>ref|NP_349864.1| (NC_003030) Permease, predicted cation efflux pump [Clostridium
acetobutylicum]
gb|AAK81204.1|AE007822_10 (AE007822) Permease, predicted cation efflux pump [Clostridium
acetobutylicum]
Length = 246
Score = 57.4 bits (137), Expect = 2e-07
Identities = 69/289 (23%), Positives = 117/289 (39%), Gaps = 74/289 (25%)
Query: 40 GFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKAL 99
G +E + + V+S+V G+I+KV + +GD IK+ DL +I++ + QAE G +AA+A
Sbjct: 32 GTVECKSFYVTSEVAGKIDKVDINEGDRIKENDLAANINADVYTIQKNQAEGGLEAAEAA 91
Query: 100 SDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYES 159
D + + D NS + V K EA AA++
Sbjct: 92 FDSIPVNTPD---NSKKQVEGKLK----------------------------EAQAAFDL 120
Query: 160 TKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSN 219
N S K S G V+EV
Sbjct: 121 ANLNLSRCDVK--------------------SQGSGVVSEV------------------- 141
Query: 220 VLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPALKKSTKFRVK 279
L++ GE+ +G + ++D+ + ++KI V E ++ K+ + Y KK+ + V
Sbjct: 142 -LVNKGEIIGQGGNIAKVLDVDNKYIKIYVEESKRDKIKLNDNLKVYYNG-KKAGEGEVS 199
Query: 280 YLSVMGDFATWKATNNSNTYDMKSYEVEAIPLEELENFRVGMSVLVTIK 328
Y+S +F T K T + + +EV + L + N+ G + V IK
Sbjct: 200 YISTESEF-TPKNTETKSDKEATVFEVR-VKLNKNFNYSPGTLMDVEIK 246
>ref|NP_251526.1| (NC_002516) probable secretion protein [Pseudomonas aeruginosa]
pir||E83291 probable secretion protein PA2836 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG06224.1|AE004710_6 (AE004710) probable secretion protein [Pseudomonas aeruginosa]
Length = 354
Score = 56.2 bits (134), Expect = 5e-07
Identities = 60/266 (22%), Positives = 106/266 (39%), Gaps = 22/266 (8%)
Query: 16 GGALLLGLIVLFYLAY--------RPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDH 67
G LL L+VL L Y R ++ A V+ KV G ++ V V+
Sbjct: 9 GSLLLAALLVLTLLVYLLFHLLAPRVVQSTDDAYVHADFTLVAPKVAGFVQDVLVEDNQP 68
Query: 68 IKKGDLVFSISSPELEAKLAQAEAGHKAAKA--LSDEVKRGSRDETINSARDVWQAAKSQ 125
+K G L+ + + LA AEA A+A + E + I AR +A +++
Sbjct: 69 VKAGQLLARLDDRDFRTALAAAEADVLGAEANLANAEANLQRQQALIEQARAKVRAEQAE 128
Query: 126 ATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIA 185
A+ R Q L G SLQ +A + ++ SA + + A+ + +
Sbjct: 129 LVFARHEQSRYQTLASKGAGSLQNAQQAQSRIDTA----SARLAEGQAAVDATRKQVSVL 184
Query: 186 AKAKESAALGQVNEVESY-------LKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMI 238
+A+ A G + +++ L + AP DG+V L G G ++ ++
Sbjct: 185 -EARVGQARGDLQRMQARRDQARLDLSYCELRAPFDGQVGRRQLRVGAYVTPGSALLAVV 243
Query: 239 DLKDSWLKISVPEKYLNEFKVGKEFE 264
L+ +++ + E L G+ E
Sbjct: 244 PLQQAYVVGNFQETQLTHVSPGQAVE 269
>ref|NP_637697.1| (NC_003902) transport protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gb|AAM41621.1| (AE012342) transport protein [Xanthomonas campestris pv. campestris
str. ATCC 33913]
Length = 399
Score = 56.2 bits (134), Expect = 5e-07
Identities = 57/262 (21%), Positives = 109/262 (40%), Gaps = 8/262 (3%)
Query: 17 GALLLGLIVLFYLAYRPKAEVLQ----GFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGD 72
G L++ L+V++ Y K +Q +L+A +V+ +V G + +V V + G
Sbjct: 47 GVLVVVLLVIWLAYYLIKGRYMQDTNNAYLQADSVAVAPRVSGYVTQVMVGDNQIVDAGQ 106
Query: 73 LVFSISSPELEAKLAQAEAGHKAAKA--LSDEVKRGSRDETINSARDVWQAAKSQATLAK 130
+ I +A L QAEA A +A + +++ ++ AR +A + A+
Sbjct: 107 PLLQIDDRTYQATLQQAEAAIAAREADIAAATANVAAQESSLVQARTQVASAAASLRFAQ 166
Query: 131 ETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGG--ASSESKIAAKA 188
KR L +G + + ++ E + AA + K A ASS AKA
Sbjct: 167 AEVKRFAPLAASGADTHEHQESLQHDLERARAQYEAAQAQAKGAQSQIQASSAQLEQAKA 226
Query: 189 KESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKIS 248
A ++ ++D + T+ I G V + + G+ G + ++ + +L +
Sbjct: 227 GVKQATADADQARVAVEDTRLTSRIHGRVGDKTVQVGQFLAAGTRTMTIVPQQSLYLVAN 286
Query: 249 VPEKYLNEFKVGKEFEGYIPAL 270
E + + G+ E + AL
Sbjct: 287 FKETQVGLMRPGQPAEIEVDAL 308
>ref|NP_294462.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||B75483 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10314.1|AE001929_7 (AE001929) conserved hypothetical protein [Deinococcus radiodurans]
Length = 387
Score = 56.2 bits (134), Expect = 5e-07
Identities = 45/209 (21%), Positives = 93/209 (43%), Gaps = 8/209 (3%)
Query: 45 REYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVK 104
R+ V+++ G ++ + V +G + KGD++ + + L A + A+ D+ +
Sbjct: 48 RDSQVATQSSGAVQSIPVSQGQAVAKGDVLVKLDDTAQQQALDNARLQQRQAQISLDQTR 107
Query: 105 RGSRDET--INSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKY 162
+ + T + ++ QAA +QA ++ + + LY G+ + D A + +
Sbjct: 108 QSTSQGTGALQASVTSAQAALAQA---EQNAQSAEKLY--GLGGISLADVQAARSQLAQA 162
Query: 163 NESAAYQKYKMALGGASSESKIA-AKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVL 221
A + + G S+ + + A+ + A V + E L AP G V++VL
Sbjct: 163 QAQLAQARNTLEQNGRSAGNSVPLAQVQLDTARTAVRQAEQNLSRTAVRAPFAGTVADVL 222
Query: 222 LSGGELSPKGFPVVLMIDLKDSWLKISVP 250
GE + +G PV+ ++D ++ VP
Sbjct: 223 TEVGEFAGQGTPVIRLVDPGSVRARVGVP 251
>ref|NP_232448.1| (NC_002506) conserved hypothetical protein [Vibrio cholerae]
pir||H82507 conserved hypothetical protein VCA0047 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF95961.1| (AE004348) conserved hypothetical protein [Vibrio cholerae]
Length = 376
Score = 55.8 bits (133), Expect = 6e-07
Identities = 55/218 (25%), Positives = 94/218 (42%), Gaps = 18/218 (8%)
Query: 16 GGALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVS---SKVPGRIEKVFVKKGDHIKKGD 72
GG +L+G ++L P + L ++ YS + S V GR+ +V VK + +GD
Sbjct: 35 GGVILIGTLILLMNYNHPFTQ-----LGSQVYSTTPIVSGVRGRVVEVPVKPNQPLTQGD 89
Query: 73 LVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGS--RDETINSARDVWQAAKSQATLAK 130
++F I EA +A+ +A K E +G+ + T+ A+ A ++ A+
Sbjct: 90 VLFRIDPIPFEADVARLKAKVK-------EASQGALGLESTLKEAQAAVLKAIAERDKAQ 142
Query: 131 ETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKE 190
Y R Q Y G + Q+ D Y++ + A K + A SE
Sbjct: 143 REYDRYQRGYQRGAFTEQQMDTTRQTYKAAQAALEVAQSKQEQAQIALDSEVG-GENTTV 201
Query: 191 SAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELS 228
+ L ++ + E L+ AP DG V+ + L G +S
Sbjct: 202 AQLLAELRKAEFDLEQTIVRAPTDGYVTQLALRPGMMS 239
>ref|NP_213914.1| (NC_000918) cation efflux system (czcB-like) [Aquifex aeolicus]
pir||C70415 cation efflux system (czcB-like) - Aquifex aeolicus
gb|AAC07317.1| (AE000735) cation efflux system (czcB-like) [Aquifex aeolicus]
Length = 348
Score = 55.5 bits (132), Expect = 8e-07
Identities = 63/287 (21%), Positives = 121/287 (41%), Gaps = 59/287 (20%)
Query: 39 QGFLEA-REYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAK 97
+G L+A +E +SS+ PG + +++ ++G+++KKG++ LAQ E+
Sbjct: 49 KGVLKAVKEAELSSQEPGVLTRLYKREGEYVKKGEV------------LAQVES------ 90
Query: 98 ALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAY 157
+ + S + +N ++V + Q L K+ Y+R + L++ + S ++ Y
Sbjct: 91 ----NLAKESYRKVLNQLKEV----EKQVELQKKIYERRKKLFERELISKEE-------Y 135
Query: 158 ESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEV 217
E KY Q+ KA ES ++ + ++ AP DG +
Sbjct: 136 EREKYKLEELIQR---------------KKALES----ELKYFKEKVRRHYVRAPFDGYI 176
Query: 218 SNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPALKKSTKFR 277
+ + G+ PV +I+L + VP +Y++ K GKE + K+ K R
Sbjct: 177 TERYKNMGDYVTPQTPVFRLINLGELEFSFKVPARYVSLLKKGKELNVELEN-GKNVKGR 235
Query: 278 VKYLSVMGD-----FATWKATNNSNTYDMKSYEVEAIPLEELENFRV 319
V ++S GD N ++ +P+ E+ F+V
Sbjct: 236 VYFISERGDENNQFLVKLLINNEEGKLKAGTFGFAEVPVREVYAFKV 282
>ref|NP_289236.1| (NC_002655) multidrug resistance secretion protein [Escherichia
coli O157:H7 EDL933]
ref|NP_311574.1| (NC_002695) multidrug resistance secretion protein [Escherichia
coli O157:H7]
gb|AAG57794.1|AE005497_5 (AE005497) multidrug resistance secretion protein [Escherichia coli
O157:H7 EDL933]
dbj|BAB36970.1| (AP002562) multidrug resistance secretion protein [Escherichia coli
O157:H7]
Length = 390
Score = 54.7 bits (130), Expect = 1e-06
Identities = 65/319 (20%), Positives = 133/319 (41%), Gaps = 29/319 (9%)
Query: 25 VLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEA 84
+ ++L R E ++ + + S+V G + KV+ D +K+GD++ ++ +
Sbjct: 40 IYWFLVLRHFEETDDAYVAGNQIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDAR- 98
Query: 85 KLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAK--ETYKRVQDLYDN 142
+A KA AL+ V++ + + INS + + LAK Y R L +
Sbjct: 99 -----QAFEKAKTALASSVRQ-THQQMINSKQLQANIEVQKIALAKAQSDYNRRVPLGNA 152
Query: 143 GVASLQKRDEAYAAYESTKYNESAAYQKYK----MALGGASSESKIAAKAKESAALGQVN 198
+ ++ A A S + A Q+Y M LG +K+ + A +V
Sbjct: 153 NLIGREELQHARDAVTSAQAQLDVAIQQYNANQAMILG-----TKLEDQPAVQQAATEVR 207
Query: 199 EVESYLKDVKATAPIDGEVS-NVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEF 257
L+ + +P+ G VS + G ++SP P++ ++ + W+ + E +
Sbjct: 208 NAWLALERTRIVSPMTGYVSRRAVQPGAQISPT-TPLMAVVPATNMWVDANFKETQIANM 266
Query: 258 KVGKEFEGYIPALKKSTKFRVKYLSV-MGDFATWKATNNSNTYDMKSYEVEAIPL----- 311
++G+ K+ K + + MG + + N V+ +P+
Sbjct: 267 RIGQPVTITTDIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELD 326
Query: 312 -EELENF--RVGMSVLVTI 327
++LE + R+G+S LV++
Sbjct: 327 QKQLEQYPLRIGLSTLVSV 345
>ref|NP_246922.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK04067.1| (AE006234) unknown [Pasteurella multocida]
Length = 368
Score = 54.7 bits (130), Expect = 1e-06
Identities = 54/248 (21%), Positives = 103/248 (40%), Gaps = 24/248 (9%)
Query: 40 GFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKAL 99
G LE V+S GR+E+V VK+GD++ K L+ ++SS ++ ++ A A + A+
Sbjct: 83 GRLEFLRLDVASLYAGRVEQVLVKEGDYVNKDTLLATLSSDTVKTQVDTAFARKQQAQ-- 140
Query: 100 SDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYES 159
+ + + A + Q A L N + S + ++ A ++
Sbjct: 141 ----------QAVKRVQAQLSAQQQQLNTALLDVDNAHKLRKNQLISSSEFEKRLALRDA 190
Query: 160 TKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSN 219
+ N A + + ++S +A A Q+ + + L D++ AP G V
Sbjct: 191 AQANLHA------LDIAVQEAQSSVA------QADAQLRQAHAILADLQIKAPQAGRVVY 238
Query: 220 VLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPALKKSTKFRVK 279
L+ G + G VV ++DL ++ + + P +N+ + E L+ V
Sbjct: 239 KLVEVGNVIAAGQKVVSLLDLNEASMYLFFPAPIVNQIPLQSEARLVFDGLEAVFPATVS 298
Query: 280 YLSVMGDF 287
Y+S F
Sbjct: 299 YVSSDAQF 306
>pir||T31342 ragD protein - Bradyrhizobium japonicum
emb|CAA12354.1| (AJ225023) RagD [Bradyrhizobium japonicum]
Length = 423
Score = 54.7 bits (130), Expect = 1e-06
Identities = 49/184 (26%), Positives = 80/184 (42%), Gaps = 38/184 (20%)
Query: 48 SVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGS 107
++ ++ G IEK +V GD +KKGDL+ I++PEL+ ++AQA+A
Sbjct: 110 NIFARTSGYIEKRYVDIGDRVKKGDLLVEITAPELDQQIAQAQA---------------- 153
Query: 108 RDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAA 167
T+ + Q A++ LA T R +L G + Q+ D N+
Sbjct: 154 ---TLAQDQAALQQAQASRELADVTNSRDSNLVKQGWLTAQQGD-----------NDRLT 199
Query: 168 YQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGEL 227
+ + A+G A +S IAA+ + L Q + + AP DG V+ + G L
Sbjct: 200 LRAQQGAVGVA--QSNIAAQEAQIRVLQQEKSYQ------RVVAPFDGVVTQRNVDNGSL 251
Query: 228 SPKG 231
G
Sbjct: 252 VQAG 255
>ref|NP_643945.1| (NC_003919) ABC transporter permease [Xanthomonas axonopodis pv.
citri str. 306]
gb|AAM38481.1| (AE012014) ABC transporter permease [Xanthomonas axonopodis pv.
citri str. 306]
Length = 423
Score = 54.7 bits (130), Expect = 1e-06
Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 6/201 (2%)
Query: 62 VKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETI--NSARDVW 119
V GD +K+G + I SPEL +KLAQ +A L E R + D T+ +A +
Sbjct: 97 VVAGDVVKQGQELARIDSPELRSKLAQEQA---TLAGLEAESSRAALDATLARANASKLT 153
Query: 120 QAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGAS 179
A+ A +R Q +D G + +A + T + A + + GA
Sbjct: 154 DQAQIDKQAAARDLERYQRGFDGGAVPQVELAKAQDTLKKTDIDLQHAQRDAALKSQGAD 213
Query: 180 SESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMID 239
+S+ + V EV+ + + +P DG+V V P++ ++D
Sbjct: 214 LDSR-NKRLLADRQRAVVAEVQRQVDALTLRSPFDGQVGQVQAVQHTQVAANAPILGVVD 272
Query: 240 LKDSWLKISVPEKYLNEFKVG 260
L ++I VPE + + +G
Sbjct: 273 LSKFEVEIKVPESFARDLAIG 293
>ref|NP_213722.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||D70391 hypothetical protein aq_1060 - Aquifex aeolicus
gb|AAC07129.1| (AE000721) putative protein [Aquifex aeolicus]
Length = 374
Score = 54.7 bits (130), Expect = 1e-06
Identities = 57/282 (20%), Positives = 124/282 (43%), Gaps = 41/282 (14%)
Query: 22 GLIVLFYLAYRPKAEVLQG-FLEAREYS-VSSKVPGRIEKVFVKKGDHIKKGDLV----- 74
G+ F++ +R + + F++A E S +S +V G++ +V+ GD++K+G+ +
Sbjct: 18 GIYAFFFIKHRIEYAITNAVFVKADELSYLSFRVSGKVIEVYKDLGDYVKRGEALAKLDP 77
Query: 75 --FSISSPELEAKLAQAEAGHKAAKALSDEVKRGS---------RDETINSARDVWQA-- 121
+ + LE K++ KA + ++++G + E++ R+ +
Sbjct: 78 TYYELEKRTLEKKMSALLEKKKALEIKIQKLEKGLHISLSAKKLKVESLKKKREALREKL 137
Query: 122 --AKSQATLAKETYKRVQDLYDNGVASLQKRDEA----YAAYESTKYNESAAYQ------ 169
+ + L K ++R + L+ G+ +K +E +Y E + +
Sbjct: 138 LQVEEKIKLVKLDWERYKSLFQKGLIPRRKFEEVDTNLKVLLHEREYLEKSIQEINTEIK 197
Query: 170 KYKMALGGASSESK-IAAKAKESAALGQ--------VNEVESYLKDVKATAPIDGEVSNV 220
+ K + A +E K I KE ++L + + E +KD AP DG V+
Sbjct: 198 RAKKGIENARNEFKTIEELKKELSSLEEEIKSLKERIKTAEQKIKDTVLIAPFDGVVAKR 257
Query: 221 LLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKE 262
+S G++ G P +++ + ++++ + E L KVG +
Sbjct: 258 FISRGDVVRAGQPAFALVNPESFYVEVLLEETKLKGVKVGNK 299
>ref|NP_439059.1| (NC_000907) multidrug resistance protein A (emrA) [Haemophilus
influenzae Rd]
sp|P44928|EMRA_HAEIN Multidrug resistance protein A homolog
pir||B64101 multidrug resistance protein ermA homolog - Haemophilus influenzae
(strain Rd KW20)
gb|AAC22558.1| (U32771) multidrug resistance protein A (emrA) [Haemophilus
influenzae Rd]
Length = 390
Score = 54.3 bits (129), Expect = 2e-06
Identities = 62/274 (22%), Positives = 116/274 (41%), Gaps = 27/274 (9%)
Query: 19 LLLGLIVLFYLAYRPK--AEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFS 76
L++G+ Y + K E ++ + VSS+V G + K+ D + GD++
Sbjct: 32 LIIGIACALYWFFFLKDFEETEDAYVGGNQVMVSSQVAGNVAKINADNMDKVHAGDILVE 91
Query: 77 ISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSA--RDVWQAAKSQATLAKETYK 134
+ + AKL+ +A A A+ + G + + SA + A++Q LA+
Sbjct: 92 LD--DTNAKLSFEQAKSNLANAVRQVEQLGFTVQQLQSAVHANEISLAQAQGNLAR---- 145
Query: 135 RVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSES-KIAAKAKESAA 193
RVQ L G + A A E K N +A+ K ++A A + + + + A
Sbjct: 146 RVQ-LEKMGAIDKESFQHAKEAVELAKANLNAS--KNQLAANQALLRNVPLREQPQIQNA 202
Query: 194 LGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKY 253
+ + + L+ K +PIDG V+ + G+ G ++ ++ + WL+ + E
Sbjct: 203 INSLKQAWLNLQRTKIRSPIDGYVARRNVQVGQAVSVGGALMAVVSNEQMWLEANFKETQ 262
Query: 254 LNEFKVG-------------KEFEGYIPALKKST 274
L ++G KEF+G I ++ T
Sbjct: 263 LTNMRIGQPVKIHFDLYGKNKEFDGVINGIEMGT 296
>ref|NP_385240.1| (NC_003047) PUTATIVE TRANSPORT PROTEIN TRANSMEMBRANE [Sinorhizobium
meliloti]
emb|CAC45713.1| (AL591786) PUTATIVE TRANSPORT PROTEIN TRANSMEMBRANE [Sinorhizobium
meliloti]
Length = 362
Score = 54.3 bits (129), Expect = 2e-06
Identities = 53/235 (22%), Positives = 103/235 (43%), Gaps = 17/235 (7%)
Query: 48 SVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAG---HKAAKALSDEVK 104
++S ++ G + +V V+ + ++ G L+ I KLAQA+A ++A A S E +
Sbjct: 58 TISPQLSGYVAEVPVRDYEEVRAGQLLVRIDDRIYVQKLAQAKATLATQRSALANSFEQE 117
Query: 105 RGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTK--- 161
++ S + AK+ A+ T+ R++ L D GVA+ D+A AA+E
Sbjct: 118 LSAKAGIAASEAQL-DGAKAALATARATWDRIRPLADKGVATRSDADQARAAFEQADAGV 176
Query: 162 ----YNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEV 217
N + Q LG + A A+ + L +++ L + + AP G +
Sbjct: 177 KQAIANLEVSRQSLATTLGARAGLEGSVAGAEAAVELAEID-----LDNTRIVAPRAGRL 231
Query: 218 SNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPALKK 272
+ G+ G ++ ++ + W+ + E L+ +VG+ + AL +
Sbjct: 232 GEIGARVGQYVTAGTQLLSVVP-HEVWIVANFKETQLDGMRVGQPVTISVDALNR 285
>ref|NP_251211.1| (NC_002516) RND divalent metal cation efflux membrane fusion
protein CzcB precursor [Pseudomonas aeruginosa]
pir||F83330 RND divalent metal cation efflux membrane fusion protein CzcB
precursor PA2521 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG05909.1|AE004679_3 (AE004679) RND divalent metal cation efflux membrane fusion protein
CzcB precursor [Pseudomonas aeruginosa]
Length = 484
Score = 54.3 bits (129), Expect = 2e-06
Identities = 62/241 (25%), Positives = 99/241 (40%), Gaps = 51/241 (21%)
Query: 41 FLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALS 100
F E R + ++PG ++ V G +K+G+L+ ISSP+L S
Sbjct: 180 FNEDRTAHIVPRLPGIVDSVPANLGQAVKQGELLAVISSPQL-----------------S 222
Query: 101 DEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYEST 160
D+ R + AA+ + +LA+ TYKR Q L+ G+++ Q E A +
Sbjct: 223 DQ-------------RSEFAAAQRRLSLAQSTYKREQQLWKEGISAEQ---EFLLARQGL 266
Query: 161 KYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNV 220
Q+ ++AL A +KIAA + G N E AP G +
Sbjct: 267 --------QEAEIALNNA--RAKIAALGGNPSLQGG-NRYE-------LRAPFAGVLVEK 308
Query: 221 LLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPALKKSTKFRVKY 280
L+ GE V + DL W +VP + L + +VG + + AL + V Y
Sbjct: 309 HLTQGEPVDGTANVFTLSDLSSVWATFNVPAQLLGQVRVGSKVKVLAQALDSEVEGTVSY 368
Query: 281 L 281
+
Sbjct: 369 I 369
>ref|NP_485546.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB77871.1| (AP003586) ORF_ID:alr1505~hypothetical protein [Nostoc sp. PCC
7120]
Length = 504
Score = 54.3 bits (129), Expect = 2e-06
Identities = 54/233 (23%), Positives = 100/233 (42%), Gaps = 52/233 (22%)
Query: 45 REYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVK 104
R +VS K G ++++ VK+GD +++G ++ + L+ +L QA+ AA+A ++
Sbjct: 90 RSVNVSPKTSGILKQLLVKEGDSVQQGQILAYMDDSNLQGQLHQAQGNLAAAQANVQKLV 149
Query: 105 RGSRDETINSAR-----------------DVWQAAKSQATL---------AKETYKRVQD 138
G+R E I +A+ + + A++QA L A++ +R Q
Sbjct: 150 NGNRAEDIATAQAQLAEQEANLQKLLNGNRLQEVAQAQAQLKDAQYALRQAEDDLQRNQK 209
Query: 139 LYDNGVASLQ-------KRDEAYAAYESTK--------------YNESAAYQKYK----- 172
LY +G +LQ RD A + + ++ A K K
Sbjct: 210 LYSSGAIALQSLNTFGTSRDRAQTQVKQAEQATSLVRSGTRPEDITQARAVVKQKQEALS 269
Query: 173 MALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGG 225
++ G+ E A+A+ ++A G V +++ L D+ AP G V+ G
Sbjct: 270 LSQAGSRPEDIQQARAQVASAQGAVQIIQANLNDMVIRAPFSGIVARKFADPG 322
>gb|AAC31387.1| (AF047693) multidrug resistance efflux pump homolog PmrA
[Pseudomonas aeruginosa]
Length = 394
Score = 53.5 bits (127), Expect = 3e-06
Identities = 54/257 (21%), Positives = 110/257 (42%), Gaps = 20/257 (7%)
Query: 19 LLLGLIVLFYLAY--------RPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKK 70
+LL +IVL LA R + ++ ++ ++ G + + GD ++K
Sbjct: 21 ILLAMIVLATLASVAWEFFYGRWHEDTDDAYINGNVVQITPQIVGTVVSIGADDGDLVRK 80
Query: 71 GDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKR-GSRDETINSARDVWQAAKSQATLA 129
G + + + L +AEA L+ V++ ++ R K A
Sbjct: 81 GQELVRFDPSDADIALQRAEAN------LAHTVRQVRGLFSNVDGYRAEVATRKVALAKA 134
Query: 130 KETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAK 189
+ YKR ++L D+G S ++ A A +S K + +++ Q+ +++I +
Sbjct: 135 EADYKRRKNLADDGAISQEELAHARDALDSAKASLTSSEQQLNTNRA-LVDDTQITSHPD 193
Query: 190 ESAALGQVNEVESYLKDVKAT--APIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKI 247
AA Q+ + +YL D ++T AP+ G V+ + G+ G ++ ++ L W+
Sbjct: 194 VKAAAAQLRQ--AYLDDARSTIVAPVTGYVAKRSVQVGQRVQPGNALMAVVPLDQIWIDA 251
Query: 248 SVPEKYLNEFKVGKEFE 264
+ E L ++G+ E
Sbjct: 252 NFKETQLKHMRIGQPVE 268
>ref|NP_253846.1| (NC_002516) multidrug resistance protein [Pseudomonas aeruginosa]
pir||D83002 multidrug resistance protein PA5159 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG08544.1|AE004928_10 (AE004928) multidrug resistance protein [Pseudomonas aeruginosa]
Length = 394
Score = 53.5 bits (127), Expect = 3e-06
Identities = 54/257 (21%), Positives = 110/257 (42%), Gaps = 20/257 (7%)
Query: 19 LLLGLIVLFYLAY--------RPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKK 70
+LL +IVL LA R + ++ ++ ++ G + + GD ++K
Sbjct: 21 ILLAMIVLATLASVAWEFFYGRWHEDTDDAYINGNVVQITPQIVGTVVSIGADDGDLVRK 80
Query: 71 GDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKR-GSRDETINSARDVWQAAKSQATLA 129
G + + + L +AEA L+ V++ ++ R K A
Sbjct: 81 GQELVRFDPSDADIALQRAEAN------LAHTVRQVRGLFSNVDGYRAEVATRKVALAKA 134
Query: 130 KETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAK 189
+ YKR ++L D+G S ++ A A +S K + +++ Q+ +++I +
Sbjct: 135 EADYKRRKNLADDGAISQEELAHARDALDSAKASLTSSEQQLNTNRA-LVDDTQITSHPD 193
Query: 190 ESAALGQVNEVESYLKDVKAT--APIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKI 247
AA Q+ + +YL D ++T AP+ G V+ + G+ G ++ ++ L W+
Sbjct: 194 VKAAAAQLRQ--AYLDDARSTIVAPVTGYVAKRSVQVGQRVQPGNALMAVVPLDQIWIDA 251
Query: 248 SVPEKYLNEFKVGKEFE 264
+ E L ++G+ E
Sbjct: 252 NFKETQLKHMRIGQPVE 268
>ref|NP_461740.1| (NC_003197) multidrug resistance secretion protein [Salmonella
typhimurium LT2]
gb|AAL21699.1| (AE008828) multidrug resistance secretion protein [Salmonella
typhimurium LT2]
Length = 390
Score = 53.5 bits (127), Expect = 3e-06
Identities = 65/318 (20%), Positives = 129/318 (40%), Gaps = 27/318 (8%)
Query: 25 VLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEA 84
+ ++L R E ++ + + ++V G + KV+ D +K+GD++ ++ + +
Sbjct: 40 IYWFLVLRHIEETDDAYVAGNQVQIMAQVSGSVTKVWADNTDFVKEGDVLVTLDQTDAK- 98
Query: 85 KLAQAEAGHKAAKALSDEVKRGSRDETINSAR-----DVWQAAKSQATLAKETYKRVQDL 139
+A KA AL+ V++ + INS + DV + A +QA + R L
Sbjct: 99 -----QAFEKAKTALASSVRQ-THQLMINSKQLQANIDVQKTALAQA---QSDLNRRVPL 149
Query: 140 YDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNE 199
+ + ++ A A S + A Q+Y A S + + A +V
Sbjct: 150 GNANLIGREELQHARDAVASAQAQLDVAIQQYN-ANQAMILNSNLEDQPAVQQAATEVRN 208
Query: 200 VESYLKDVKATAPIDGEVS-NVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFK 258
L+ + +P+ G VS + G ++SP P++ ++ D W+ + E L +
Sbjct: 209 AWLALERTRIVSPMTGYVSRRAVQPGAQISPT-TPLMAVVPATDLWVDANFKETQLANMR 267
Query: 259 VGKEFEGYIPALKKSTKFRVKYLSV-MGDFATWKATNNSNTYDMKSYEVEAIPLE----- 312
+G+ K+ K + + MG + + N V+ +P+
Sbjct: 268 IGQPVTVITDIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRVELDA 327
Query: 313 ---ELENFRVGMSVLVTI 327
E R+G+S LVT+
Sbjct: 328 RQLEQHPLRIGLSTLVTV 345
>ref|NP_387005.1| (NC_003047) PUTATIVE MULTIDRUG EFFLUX SYSTEM PROTEIN [Sinorhizobium
meliloti]
emb|CAC47478.1| (AL591792) PUTATIVE MULTIDRUG EFFLUX SYSTEM PROTEIN [Sinorhizobium
meliloti]
Length = 382
Score = 52.8 bits (125), Expect = 5e-06
Identities = 62/282 (21%), Positives = 105/282 (36%), Gaps = 32/282 (11%)
Query: 8 KNKAILTGGGALLLGLIVLFYLAYRPKAEVL----QGFLEAREYSVSSKVPGRIEKVFVK 63
K + IL G +LLG + + L ++E ++S KV G + KV V
Sbjct: 32 KRRKILPVLGLVLLGAAGWYGYDWWTNGRFLVSTDDAYIEGDIATISPKVSGYVAKVDVV 91
Query: 64 KGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAK 123
H+K GD + ++ + QAEA K + A+ Q
Sbjct: 92 ANQHVKAGDPLVTLDDGDYRIAAEQAEAQIATQKLALSRFDAQISGAKASLAQSEAQKKA 151
Query: 124 SQATL--AKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSE 181
+AT+ A+ KR +L + RD A A + + N L GA +
Sbjct: 152 LEATVRGAELAQKRASELQSKSFGTDASRDSAQVALDQARAN-----------LAGAEA- 199
Query: 182 SKIAAKAKESAALGQVNEVESYLKDVKAT--------------APIDGEVSNVLLSGGEL 227
+ AAKA + Q E ES ++ ++ AP DG + NV + G+L
Sbjct: 200 NIAAAKANITVLEAQQMEAESTIRSLELARDKADRDLGFTILKAPYDGVIGNVAVQVGDL 259
Query: 228 SPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPA 269
G + ++ ++ + E + G + E ++ A
Sbjct: 260 VSAGQRLAALVPTDQLYIDANFKETQIAHLVPGSKVEIHVDA 301
>ref|NP_520847.1| (NC_003295) PROBABLE MULTIDRUG RESISTANCE TRANSPORT TRANSMEMBRANE
PROTEIN [Ralstonia solanacearum]
emb|CAD16433.1| (AL646071) PROBABLE MULTIDRUG RESISTANCE TRANSPORT TRANSMEMBRANE
PROTEIN [Ralstonia solanacearum]
Length = 388
Score = 52.8 bits (125), Expect = 5e-06
Identities = 51/235 (21%), Positives = 104/235 (43%), Gaps = 9/235 (3%)
Query: 41 FLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALS 100
+++A +V+ KV G +E+V V ++ G + I E A+LAQ +A +AA A +
Sbjct: 71 YIQADIVTVAPKVSGYVERVDVANNQEVRAGQRLLRIDPREYAAQLAQYQAQVEAANASA 130
Query: 101 DEVKR--GSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVAS---LQKRDEAYA 155
D + ++ +I A+ Q+A+ A +R L +G + L A
Sbjct: 131 DNARAQLATQKASIAQAQAQLQSAEHDAQFTAAQTQRYASLVASGAETRDRLSTLQNQAA 190
Query: 156 AYESTKYNESAAYQKYKMALGGASSESKIA-AKAKESAALGQVNEVESYLKDVKATAPID 214
+ + AA K + + ++ + A A+AK + A V EV +++A+ D
Sbjct: 191 QARANAQAQRAALTKATLEIAALQAQLRQAEAQAKTARAQAAVAEVNLAATELRAST--D 248
Query: 215 GEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPA 269
G V + + G+ G ++ ++ + ++ + E L ++G+ ++ A
Sbjct: 249 GRVGDSQVRAGQFVSAGTRLMSVVPM-HLYITANFKETQLGRMRIGQPVHIHVDA 302
>ref|NP_484489.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB72403.1| (AP003582) ORF_ID:alr0445~hypothetical protein [Nostoc sp. PCC
7120]
Length = 520
Score = 52.4 bits (124), Expect = 7e-06
Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 52/226 (23%)
Query: 45 REYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVK 104
R ++S K G ++++ VK+GD +K+G ++ + L +L A+ A+A +V+
Sbjct: 85 RSVNLSPKNSGILKQLLVKEGDVVKQGQVLAYMDDSNLRGQLISAQGQLAQAQANLQKVQ 144
Query: 105 RGSRDETI--------------------NSARDVWQA------AKSQATLAKETYKRVQD 138
G+R + I N +D+ QA A++ T ++ +R Q
Sbjct: 145 AGNRPQDIGQSQAQLDEALANLRKLEAGNRPQDIAQAQARLKSAQASLTQTEDDLRRNQQ 204
Query: 139 LYDNGVASLQ-------KRDEAYA----AYESTKYNESAAYQK---------------YK 172
LY++G +LQ +RD A A A ++ ++ + Q+
Sbjct: 205 LYNDGAIALQVVNQKRTERDSAQAQVNEAQQALALQQAGSRQEDIEQARATVRQRQEALA 264
Query: 173 MALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVS 218
+ G E AA+A+ ++A G + ++ + D AP DG V+
Sbjct: 265 LLKAGNRREDIDAARAQVTSARGSLQNTQAQINDTVLRAPFDGIVT 310
>ref|NP_103897.1| (NC_002678) probable secretion protein [Mesorhizobium loti]
dbj|BAB49683.1| (AP003000) probable secretion protein [Mesorhizobium loti]
Length = 367
Score = 52.4 bits (124), Expect = 7e-06
Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 12/221 (5%)
Query: 49 VSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKR--G 106
++ +V G I+++ V+ H+ G L+ I +A + +A A + ++ D ++
Sbjct: 72 LAPRVAGHIDQILVEDNQHVDAGQLIIRIDDRPFKAAVERARASVQQQQSALDNLRAQVS 131
Query: 107 SRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESA 166
++ I A +A + AT + KR + L S Q + AA K + SA
Sbjct: 132 LQNSLIEQAEADLEAKSAAATFTTQDAKRYEVLASTRAGSQQDAQRSLAADGQAKASVSA 191
Query: 167 AYQKYKMALGGASSESKIA------AKAKESAALGQVNEVESYLKDVKATAPIDGEVSNV 220
+ + L A + + A A AA ++ E L + APIDG V N
Sbjct: 192 S----RAGLAAARQQLDVLNTQISEATAAVLAAKADLDTAELDLGFTQIRAPIDGLVGNR 247
Query: 221 LLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGK 261
L G G ++ ++ W+ + E L G+
Sbjct: 248 LAQVGTYVSPGSYLLTIVPQSGLWVDANFKEDQLRRMADGQ 288
>pir||JC1344 multidrug resistant protein emrA - Escherichia coli
gb|AAA23724.1| (M86657) multidrug resistance; putative [Escherichia coli]
Length = 390
Score = 52.4 bits (124), Expect = 7e-06
Identities = 66/322 (20%), Positives = 136/322 (41%), Gaps = 35/322 (10%)
Query: 25 VLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEA 84
+ ++L R E ++ + + S+V G + KV+ D +K+GD++ ++ +
Sbjct: 40 IYWFLVLRHFEETDDAYVAGNQMQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDAR- 98
Query: 85 KLAQAEAGHKAAKALSDEVKRGSRDETINSAR-----DVWQAAKSQATLAKETYKRVQDL 139
+A KA AL+ V++ + INS + +V + A +QA + Y R L
Sbjct: 99 -----QAFEKAKTALASSVRQ-THQLMINSKQLQANIEVQKIALAQA---QSDYNRRVPL 149
Query: 140 YDNGVASLQKRDEAYAAYESTKYNESAAYQKYK----MALGGASSESKIAAKAKESAALG 195
+ + ++ A A S + A Q+Y M LG +K+ + A
Sbjct: 150 GNANLIGREELQHARDAVTSAQAQLDVAIQQYNANQAMILG-----TKLEDQPAVQQAAT 204
Query: 196 QVNEVESYLKDVKATAPIDGEVS-NVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYL 254
+V L+ + +P+ G VS + G ++SP P++ ++ + W+ + E +
Sbjct: 205 EVRNAWLALERTRIISPMTGYVSRRAVQPGAQISPT-TPLMAVVPATNMWVDANFKETQI 263
Query: 255 NEFKVGKEFEGYIPALKKSTKFRVKYLSV-MGDFATWKATNNSNTYDMKSYEVEAIPL-- 311
++G+ K+ K + + MG + + N V+ +P+
Sbjct: 264 ANMRIGQPVTITTDIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRI 323
Query: 312 ----EELENF--RVGMSVLVTI 327
++LE + R+G+S LV++
Sbjct: 324 ELDQKQLEQYPLRIGLSTLVSV 345
>ref|NP_417170.1| (NC_000913) multidrug resistance secretion protein [Escherichia
coli K12]
sp|P27303|EMRA_ECOLI Multidrug resistance protein A
pir||F65048 multidrug resistance protein A - Escherichia coli
gb|AAC75732.1| (AE000353) multidrug resistance secretion protein [Escherichia coli
K12]
dbj|BAA16547.1| (D90891) multidrug resistant protein emrA [Escherichia coli]
dbj|BAA16552.1| (D90892) multidrug resistant protein emrA [Escherichia coli]
Length = 390
Score = 52.4 bits (124), Expect = 7e-06
Identities = 65/319 (20%), Positives = 132/319 (41%), Gaps = 29/319 (9%)
Query: 25 VLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEA 84
+ ++L R E ++ + + S+V G + KV+ D +K+GD++ ++ +
Sbjct: 40 IYWFLVLRHFEETDDAYVAGNQIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDAR- 98
Query: 85 KLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAK--ETYKRVQDLYDN 142
+A KA AL+ V++ + INS + + LAK Y R L +
Sbjct: 99 -----QAFEKAKTALASSVRQ-THQLMINSKQLQANIEVQKIALAKAQSDYNRRVPLGNA 152
Query: 143 GVASLQKRDEAYAAYESTKYNESAAYQKYK----MALGGASSESKIAAKAKESAALGQVN 198
+ ++ A A S + A Q+Y M LG +K+ + A +V
Sbjct: 153 NLIGREELQHARDAVTSAQAQLDVAIQQYNANQAMILG-----TKLEDQPAVQQAATEVR 207
Query: 199 EVESYLKDVKATAPIDGEVS-NVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEF 257
L+ + +P+ G VS + G ++SP P++ ++ + W+ + E +
Sbjct: 208 NAWLALERTRIISPMTGYVSRRAVQPGAQISPT-TPLMAVVPATNMWVDANFKETQIANM 266
Query: 258 KVGKEFEGYIPALKKSTKFRVKYLSV-MGDFATWKATNNSNTYDMKSYEVEAIPL----- 311
++G+ K+ K + + MG + + N V+ +P+
Sbjct: 267 RIGQPVTITTDIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELD 326
Query: 312 -EELENF--RVGMSVLVTI 327
++LE + R+G+S LV++
Sbjct: 327 QKQLEQYPLRIGLSTLVSV 345
>ref|NP_214161.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||B70446 hypothetical protein aq_1687 - Aquifex aeolicus
gb|AAC07560.1| (AE000751) putative protein [Aquifex aeolicus]
Length = 480
Score = 52.0 bits (123), Expect = 9e-06
Identities = 81/342 (23%), Positives = 138/342 (39%), Gaps = 64/342 (18%)
Query: 18 ALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSI 77
AL GL ++F+ PKA + F S+ + +EKV+VK+GD ++K ++F
Sbjct: 158 ALAFGLYLVFWAT--PKAYSVDAFYSGNVVSLITPWEAILEKVYVKEGDEVRKNQVLFKT 215
Query: 78 SSPELE---------------AKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAA 122
S E E A + + K AL DE + +R + S + + A
Sbjct: 216 SRIEDEKDGYGGVGVRILRDRAAILREIEKTKNKIALLDERIKATRFR-LRSLKVELEKA 274
Query: 123 KSQATL---AKETYKRVQDLYDNGVASLQK------RDEAYAAYESTKYNESAAYQKYKM 173
KS L ++ Y+ ++ Y + SL++ DE Y A+ T E ++
Sbjct: 275 KSAFELGYISRSVYEDKENEYKELLLSLRELEKEKSADERYLAFLYTLLKELGSF----Y 330
Query: 174 ALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFP 233
A GG E + E Y AP DG V +V G++ G P
Sbjct: 331 AGGGGGDEE---------------DNFEIY------RAPFDGIVLSVYYLEGQILTPGMP 369
Query: 234 VVLMIDLKDSWLKISVPEK----YLNEFKVGKEFEGYIPALKKSTKFRVKYL--SVMGDF 287
V+++ L+ I+ +K Y+N VG + Y P+++K+ + +V + +GD
Sbjct: 370 VMVIESLEKKGYVIARFKKRDVLYIN---VGDKARVYFPSIEKTVEGKVIAIGKKALGDE 426
Query: 288 ATWKATNNSNTYDMKSYEVEAIPLEELENFRVGMSVLVTIKP 329
+ + S Y + V+ E + G+ V I P
Sbjct: 427 S---MISESEEYALPDVPVKIELFEYPQELHHGIKAEVEITP 465
>ref|NP_457212.1| (NC_003198) multidrug resistance protein A [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD05925.1| (AL627276) multidrug resistance protein A [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 390
Score = 52.0 bits (123), Expect = 9e-06
Identities = 64/318 (20%), Positives = 129/318 (40%), Gaps = 27/318 (8%)
Query: 25 VLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEA 84
+ ++L R E ++ + + ++V G + KV+ D +K+GD++ ++ + +
Sbjct: 40 IYWFLVLRHIEETDDAYVAGNQVQIMAQVSGSVTKVWADNTDFVKEGDVLVTLDQTDAK- 98
Query: 85 KLAQAEAGHKAAKALSDEVKRGSRDETINSAR-----DVWQAAKSQATLAKETYKRVQDL 139
+A +A AL+ V++ + INS + DV + A +QA + R L
Sbjct: 99 -----QAFERAKTALASSVRQ-THQLMINSKQLQANIDVQKTALAQA---QSDLNRRVPL 149
Query: 140 YDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNE 199
+ + ++ A A S + A Q+Y A S + + A +V
Sbjct: 150 GNANLIGREELQHARDAVASAQAQLDVAIQQYN-ANQAMILNSNLEDQPAVQQAATEVRN 208
Query: 200 VESYLKDVKATAPIDGEVS-NVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFK 258
L+ + +P+ G VS + G ++SP P++ ++ D W+ + E L +
Sbjct: 209 AWLALERTRIVSPMTGYVSRRAVQPGAQISPT-TPLMAVVPATDLWVDANFKETQLANMR 267
Query: 259 VGKEFEGYIPALKKSTKFRVKYLSV-MGDFATWKATNNSNTYDMKSYEVEAIPLE----- 312
+G+ K+ K + + MG + + N V+ +P+
Sbjct: 268 IGQPVTIITDIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRVELDA 327
Query: 313 ---ELENFRVGMSVLVTI 327
E R+G+S LVT+
Sbjct: 328 RQLEQHPLRIGLSTLVTV 345
>ref|NP_252050.1| (NC_002516) probable secretion protein [Pseudomonas aeruginosa]
pir||G83225 probable secretion protein PA3360 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG06748.1|AE004758_5 (AE004758) probable secretion protein [Pseudomonas aeruginosa]
Length = 352
Score = 51.6 bits (122), Expect = 1e-05
Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 16/219 (7%)
Query: 23 LIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPEL 82
L+ ++ P+A++ + + V+ +V G++ +V V H++ G+++F +
Sbjct: 26 LVADLWMPLTPQAQLTRPVVR-----VAPRVSGQVAEVLVSNNGHVQPGEVLFRLDPEPF 80
Query: 83 EAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDN 142
+ QAE + A+ + E+ D I SA+ AA+S A +R L
Sbjct: 81 RLAVRQAELALEEAERTNREL-----DAAIASAKADLLAARSSAGELDSEARRTAQLVQR 135
Query: 143 GVASLQKRDEAYAAYESTKYNESAAYQKY--KMALGGASSESKIAAKAKESAALGQVNEV 200
S Q ++ A ++ + +AA + A G + E + + +A + +
Sbjct: 136 HHVSQQMHEQVSAQAQAARARVAAAQARIGELTARRGTAGEDNLRLRQARNA----LAQA 191
Query: 201 ESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMID 239
L+ A G +SN+ L+ G P G PV ++D
Sbjct: 192 RLQLQYSSVRADRAGTLSNLQLTPGTYVPAGTPVAALVD 230
>ref|NP_636773.1| (NC_003902) multidrug resistance efflux pump [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gb|AAM40697.1| (AE012239) multidrug resistance efflux pump [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 397
Score = 51.6 bits (122), Expect = 1e-05
Identities = 48/249 (19%), Positives = 108/249 (43%), Gaps = 14/249 (5%)
Query: 20 LLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISS 79
++GL+V ++L R + +++ + ++ V G + + + G +++G L+ +
Sbjct: 34 VIGLVVWYFLIGRWAEDTDDAYVQGNQVQITPMVGGTVVSIGAEDGMRVERGQLLVQLDP 93
Query: 80 PELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDL 139
+ L QAEA AK + RG ++ A+ A + A+ + R +DL
Sbjct: 94 SDTAVALQQAEAN--LAKTVRQV--RGLY-RSVEGAQAELSAREVTLRSARADFARRKDL 148
Query: 140 YDNGVASLQK----RDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALG 195
+G S ++ RDE AA E+ ++++ + + ++++A + AA
Sbjct: 149 AASGAISNEELAHARDELAAA-EAAVSGSRESFERNRALI----DDTEVATQPDVQAAAA 203
Query: 196 QVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLN 255
Q+ + AP+ G V+ G+ G ++ ++ + W++ + E L
Sbjct: 204 QLRQAFLNHARTGVVAPVSGYVARRSAQVGQRVQPGTVLMAVVPPEQMWVEANFKETQLK 263
Query: 256 EFKVGKEFE 264
++G+ E
Sbjct: 264 HMRLGQTVE 272
>ref|NP_484852.1| (NC_003272) ABC transporter, membrane fusion protein, devB homolog
[Nostoc sp. PCC 7120]
dbj|BAB72766.1| (AP003583) ABC transporter, membrane fusion protein, devB
homolog~ORF_ID:all0809 [Nostoc sp. PCC 7120]
Length = 406
Score = 51.6 bits (122), Expect = 1e-05
Identities = 65/256 (25%), Positives = 109/256 (42%), Gaps = 51/256 (19%)
Query: 17 GALLLGLIVLFYLA-YRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVF 75
GALL L + L PK +V++ L A S S R+E++ VK+GD +K G L+
Sbjct: 53 GALLPELKTVTALGRIEPKGKVIK--LSATTSSEGS----RVEQLLVKEGDRVKPGQLIA 106
Query: 76 SISSPE-LEAKLAQAEAGHKAAKALSDEVKRGSRDETI----------------NSARDV 118
+ S + L+A L +A+ K A+A + + G++ I N A +
Sbjct: 107 ILDSRDRLKAALKEAQEQVKVAQANLNRTQAGAKGGEIAAQMATIAKLEAEGRGNIAAQL 166
Query: 119 WQAAKSQATLAKET--YKRVQDLYDNGVASLQKRD--------------EAYAAYESTKY 162
A+ QA + T +R Q LY G S + D EA A + +
Sbjct: 167 ATVARLQAEVRNATAENQRYQTLYQQGAVSASEGDRQRLNLETAQKTLQEAQADLQRIQT 226
Query: 163 NESAAYQKYKMALGGASSESKI---AAKAKESAALGQVNEVESYL--------KDVKATA 211
Q+ K L + + AAKA+ + A+ +N+ + +L K+++ ++
Sbjct: 227 TSQQQLQQAKATLAQITEVRGVDVEAAKAEVNRAIAAMNQAKVHLQQAYVRWPKELRGSS 286
Query: 212 PIDGEVSNVLLSGGEL 227
P D +V + GEL
Sbjct: 287 PQDAQVFEIHTHPGEL 302
>ref|NP_283526.1| (NC_003116) putative periplasmic protein [Neisseria meningitidis
Z2491]
pir||B81916 probable periplasmic protein NMA0728 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB84012.1| (AL162754) putative periplasmic protein [Neisseria meningitidis
Z2491]
Length = 392
Score = 51.2 bits (121), Expect = 2e-05
Identities = 61/264 (23%), Positives = 111/264 (41%), Gaps = 46/264 (17%)
Query: 48 SVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKL--AQAEAGHKAAKALSDEVKR 105
SV ++ G+I+K++VK G +KKGDL+ I+S L +++ AK +S ++
Sbjct: 60 SVGAQASGQIKKLYVKLGQQVKKGDLIAEINSTSQTNTLNTEKSKLETYQAKLVSAQIAL 119
Query: 106 GSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNES 165
GS A++ YKR L+ + + + + A A + K N +
Sbjct: 120 GS---------------------AEKKYKRQAALWKDDATAKEDLESAQDALAAAKANVA 158
Query: 166 AAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGG 225
L +SKI+ +N ES L + TA +DG V +L+ G
Sbjct: 159 --------ELKALIRQSKIS-----------INTAESELGYTRITATMDGTVVAILVEEG 199
Query: 226 EL--SPKGFPVVLMIDLKDSWL-KISVPEKYLNEFKVGKEFEGYIPALKKSTKFRVKYLS 282
+ + + P ++ + D L K+ + E + + K G++ I + + T + K S
Sbjct: 200 QTVNAAQSTPTIVQLANLDMMLNKMQIAEGDITKVKAGQDISFTILS-EPDTPIKAKLDS 258
Query: 283 VMGDFATWKATNNSNTYDMKSYEV 306
V T + +++ D S V
Sbjct: 259 VDPGLTTMSSGGYNSSTDTASNAV 282
>ref|NP_273593.1| (NC_003112) AcrA/AcrE family protein [Neisseria meningitidis MC58]
pir||B81187 AcrA/AcrE family protein NMB0548 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40977.1| (AE002410) AcrA/AcrE family protein [Neisseria meningitidis MC58]
Length = 392
Score = 50.8 bits (120), Expect = 2e-05
Identities = 61/264 (23%), Positives = 110/264 (41%), Gaps = 46/264 (17%)
Query: 48 SVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKL--AQAEAGHKAAKALSDEVKR 105
SV ++ G+I+ ++VK G +KKGDL+ I+S L +++ AK +S ++
Sbjct: 60 SVGAQASGQIKILYVKLGQQVKKGDLIAEINSTSQTNTLNTEKSKLETYQAKLVSAQIAL 119
Query: 106 GSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNES 165
GS A++ YKR L+ S + + A A+ + K N +
Sbjct: 120 GS---------------------AEKKYKRQAALWKENATSKEDLESAQDAFAAAKANVA 158
Query: 166 AAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGG 225
L +SKI+ +N ES L + TA +DG V +L+ G
Sbjct: 159 --------ELKALIRQSKIS-----------INTAESELGYTRITATMDGTVVAILVEEG 199
Query: 226 EL--SPKGFPVVLMIDLKDSWL-KISVPEKYLNEFKVGKEFEGYIPALKKSTKFRVKYLS 282
+ + + P ++ + D L K+ + E + + K G++ I + + T + K S
Sbjct: 200 QTVNAAQSTPTIVQLANLDMMLNKMQIAEGDITKVKAGQDISFTILS-EPDTPIKAKLDS 258
Query: 283 VMGDFATWKATNNSNTYDMKSYEV 306
V T + +++ D S V
Sbjct: 259 VDPGLTTMSSGGYNSSTDTASNAV 282
>ref|NP_281789.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||E81408 probable periplasmic protein Cj0606 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB75242.1| (AL139075) putative periplasmic protein [Campylobacter jejuni]
Length = 390
Score = 50.4 bits (119), Expect = 3e-05
Identities = 63/292 (21%), Positives = 124/292 (41%), Gaps = 53/292 (18%)
Query: 46 EYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKR 105
+ V ++V G+I K++V G H+K+GDL+ I + + L +A ++AKA +
Sbjct: 57 QVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKAQLESAKANLE---- 112
Query: 106 GSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNES 165
+ K +A + Y+R Q LY +SL+ + Y + K N +
Sbjct: 113 ---------------SKKVALEIANKQYQREQKLYAAKASSLENLETQKNNYYTLKANVA 157
Query: 166 AAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGG 225
L + +I K + L TAP+DG V NV + G
Sbjct: 158 E--------LNAQVVQLEITLK-----------NAQKDLGYTTITAPMDGVVINVAVDEG 198
Query: 226 EL--SPKGFPVVLMI-DLKDSWLKISVPEKYLNEFKVGKEFEGYIPALKKSTKFRVKYLS 282
+ + + P ++ I +L + +++ + E +++ KVG E + + + T + K S
Sbjct: 199 QTVNANQNTPTIVRIANLDEMEVRMEIAEADVSKIKVGTELDFSLLNDPQKT-YHAKIAS 257
Query: 283 V------MGDFATWKATNNSNTYDMKS-----YEVEAIPLEELENFRVGMSV 323
+ + D +T ++++S++ S Y + + + R+GMS+
Sbjct: 258 IDPADTEVSDSSTSSSSSSSSSSSSSSSNAIYYYAKFYVANKDDFLRIGMSI 309
>dbj|BAA11236.1| (D78168) EmrK [Escherichia coli]
Length = 351
Score = 49.7 bits (117), Expect = 5e-05
Identities = 59/293 (20%), Positives = 115/293 (39%), Gaps = 25/293 (8%)
Query: 49 VSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSR 108
+S++V G + V K +++++GD++ S+ + +A +A +A + A + K +
Sbjct: 21 ISAQVSGSVTVVNHKDTNYVRQGDILVSLD--KTDATIALNKAKNNLANIVRQTNKLYLQ 78
Query: 109 DETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAY 168
D+ ++ +A+ Q + E Y R L GV S + + S+K +AA
Sbjct: 79 DKQYSAEV---ASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTLISSKAALNAAI 135
Query: 169 QKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELS 228
Q YK A + + + + A E LK +P+ G ++ + GE
Sbjct: 136 QAYK-ANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQVGETV 194
Query: 229 PKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKE-------------FEGYIPALKKSTK 275
G ++ ++ + W+ + E L + ++G+ F G + + T
Sbjct: 195 SPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTG 254
Query: 276 FRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPLEELEN-FRVGMSVLVTI 327
L W EV P E +E+ R+G+S+ TI
Sbjct: 255 NAFSLLPAQNATGNW-----IKIVQRVPVEVSLDPKELMEHPLRIGLSMTATI 302
>dbj|BAA16239.1| (D90867) MULTIDRUG RESISTANCE PROTEIN K. [Escherichia coli]
Length = 390
Score = 49.7 bits (117), Expect = 5e-05
Identities = 59/293 (20%), Positives = 115/293 (39%), Gaps = 25/293 (8%)
Query: 49 VSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSR 108
+S++V G + V K +++++GD++ S+ + +A +A +A + A + K +
Sbjct: 60 ISAQVSGSVTVVNHKDTNYVRQGDILVSLD--KTDATIALNKAKNNLANIVRQTNKLYLQ 117
Query: 109 DETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAY 168
D+ ++ +A+ Q + E Y R L GV S + + S+K +AA
Sbjct: 118 DKQYSAEV---ASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTLISSKAALNAAI 174
Query: 169 QKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELS 228
Q YK A + + + + A E LK +P+ G ++ + GE
Sbjct: 175 QAYK-ANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQVGETV 233
Query: 229 PKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKE-------------FEGYIPALKKSTK 275
G ++ ++ + W+ + E L + ++G+ F G + + T
Sbjct: 234 SPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTG 293
Query: 276 FRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPLEELEN-FRVGMSVLVTI 327
L W EV P E +E+ R+G+S+ TI
Sbjct: 294 NAFSLLPAQNATGNW-----IKIVQRVPVEVSLDPKELMEHPLRIGLSMTATI 341
>ref|NP_416869.1| (NC_000913) multidrug resistance protein K [Escherichia coli K12]
sp|P52599|EMRK_ECOLI Multidrug resistance protein K
pir||E65010 multidrug resistance protein K - Escherichia coli (strain K-12)
gb|AAC75427.1| (AE000325) multidrug resistance protein K [Escherichia coli K12]
Length = 387
Score = 49.7 bits (117), Expect = 5e-05
Identities = 59/293 (20%), Positives = 115/293 (39%), Gaps = 25/293 (8%)
Query: 49 VSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSR 108
+S++V G + V K +++++GD++ S+ + +A +A +A + A + K +
Sbjct: 57 ISAQVSGSVTVVNHKDTNYVRQGDILVSLD--KTDATIALNKAKNNLANIVRQTNKLYLQ 114
Query: 109 DETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAY 168
D+ ++ +A+ Q + E Y R L GV S + + S+K +AA
Sbjct: 115 DKQYSAEV---ASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTLISSKAALNAAI 171
Query: 169 QKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELS 228
Q YK A + + + + A E LK +P+ G ++ + GE
Sbjct: 172 QAYK-ANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQVGETV 230
Query: 229 PKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKE-------------FEGYIPALKKSTK 275
G ++ ++ + W+ + E L + ++G+ F G + + T
Sbjct: 231 SPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTG 290
Query: 276 FRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPLEELEN-FRVGMSVLVTI 327
L W EV P E +E+ R+G+S+ TI
Sbjct: 291 NAFSLLPAQNATGNW-----IKIVQRVPVEVSLDPKELMEHPLRIGLSMTATI 338
>ref|NP_288938.1| (NC_002655) multidrug resistance protein K [Escherichia coli
O157:H7 EDL933]
ref|NP_311274.1| (NC_002695) multidrug resistance protein K [Escherichia coli
O157:H7]
gb|AAG57493.1|AE005468_2 (AE005468) multidrug resistance protein K [Escherichia coli O157:H7
EDL933]
dbj|BAB36670.1| (AP002561) multidrug resistance protein K [Escherichia coli
O157:H7]
Length = 387
Score = 49.7 bits (117), Expect = 5e-05
Identities = 59/293 (20%), Positives = 115/293 (39%), Gaps = 25/293 (8%)
Query: 49 VSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSR 108
+S++V G + V K +++++GD++ S+ + +A +A +A + A + K +
Sbjct: 57 ISAQVSGSVTVVNHKDTNYVRQGDILVSLD--KTDATIALNKAKNNLANIVRQTNKLYLQ 114
Query: 109 DETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAY 168
D+ ++ +A+ Q + E Y R L GV S + + S+K +AA
Sbjct: 115 DKQYSAEV---ASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTLISSKAALNAAI 171
Query: 169 QKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELS 228
Q YK A + + + + A E LK +P+ G ++ + GE
Sbjct: 172 QAYK-ANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQVGETV 230
Query: 229 PKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKE-------------FEGYIPALKKSTK 275
G ++ ++ + W+ + E L + ++G+ F G + + T
Sbjct: 231 SPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTG 290
Query: 276 FRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPLEELEN-FRVGMSVLVTI 327
L W EV P E +E+ R+G+S+ TI
Sbjct: 291 NAFSLLPAQNATGNW-----IKIVQRVPVEVSLDPKELMEHPLRIGLSMTATI 338
>ref|NP_220628.1| (NC_000963) MULTIDRUG RESISTANCE PROTEIN A (emrA) [Rickettsia
prowazekii]
pir||G71678 multidrug resistance protein A (emrA) RP243 - Rickettsia prowazekii
emb|CAA14705.1| (AJ235271) MULTIDRUG RESISTANCE PROTEIN A (emrA) [Rickettsia
prowazekii]
Length = 350
Score = 48.9 bits (115), Expect = 8e-05
Identities = 52/258 (20%), Positives = 109/258 (42%), Gaps = 23/258 (8%)
Query: 19 LLLGLIVLFYLAYR-----PKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDL 73
+++ LI+ Y YR +++A ++S++V G + K+FV + KG+L
Sbjct: 22 IIIVLIIFTYFGYRIYVWANTQSTDNAYIDADISNISAEVSGVLTKLFVTNNTRVNKGEL 81
Query: 74 VFSISSPELEAKLAQAEAGHKAA----KALSDEVKRGSRDETINSARDVWQAAKSQATLA 129
+ I + +A+LA +A +A + + ++ G + + + K +
Sbjct: 82 IGEIDDRDYKARLAALDAAIQACIKNIEIIEQKISIGKM--RLEQVAEKLKLTKISFDII 139
Query: 130 KETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAK 189
+ RVQ L + S + D++ Y+ K Y++ ++ L S + + +
Sbjct: 140 SIDFTRVQALSNAKFVSSKTLDDSKNEYQKVK----TEYKQAQLDL-DISKHNLQLLELE 194
Query: 190 ESAALGQVNEVES-------YLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKD 242
+SAA ++ E+ L++ K A + G SN L+ G G + ++
Sbjct: 195 KSAAQEKLKELTENKKITLRSLQNTKIIAMVPGIFSNSNLAVGNYIVMGKALFSIVQDNT 254
Query: 243 SWLKISVPEKYLNEFKVG 260
++K + E + FK G
Sbjct: 255 MYIKANFKETQIKNFKSG 272
>ref|NP_386862.1| (NC_003047) PUTATIVE MULTIDRUG EFFLUX SYSTEM TRANSMEMBRANE PROTEIN
[Sinorhizobium meliloti]
emb|CAC47335.1| (AL591791) PUTATIVE MULTIDRUG EFFLUX SYSTEM TRANSMEMBRANE PROTEIN
[Sinorhizobium meliloti]
Length = 385
Score = 48.9 bits (115), Expect = 8e-05
Identities = 49/192 (25%), Positives = 72/192 (36%), Gaps = 52/192 (27%)
Query: 36 EVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKA 95
E + F E S+ ++V G +++VF G +KKGD +F I L+QAEA
Sbjct: 48 EFIGRFEAVDEVSIRARVGGYLDQVFFTDGAMVKKGDKLFVIDQRPFRTALSQAEAS--- 104
Query: 96 AKALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYA 155
+AA+S A+ T+KR + L G S+ + D+
Sbjct: 105 -----------------------LEAARSTLVFAETTFKRTESLAGTGTLSVSRLDDD-- 139
Query: 156 AYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDG 215
+ AL A + + A A E A L L TAP+ G
Sbjct: 140 ----------------RRALLSAQANVRGAEAAVERARLD--------LDYTTITAPLSG 175
Query: 216 EVSNVLLSGGEL 227
V L+S G L
Sbjct: 176 RVDRRLISPGNL 187
>ref|NP_488320.1| (NC_003272) heterocyst specific ABC-transporter, membrane fusion
protein DevB homolog [Nostoc sp. PCC 7120]
dbj|BAB75979.1| (AP003595) ORF_ID:alr4280~heterocyst specific ABC-transporter,
membrane fusion protein DevB homolog [Nostoc sp. PCC
7120]
Length = 436
Score = 48.5 bits (114), Expect = 1e-04
Identities = 56/228 (24%), Positives = 92/228 (39%), Gaps = 45/228 (19%)
Query: 33 PKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPE-LEAKLAQAEA 91
PK EV++ L A SS R+EK+ VK+GD +K G ++ + + + LEA +A+
Sbjct: 71 PKGEVIK--LSAPS---SSGQGSRVEKLLVKEGDRVKAGQVIAILDNRDRLEAAYQEAQE 125
Query: 92 GHKAAKALSDEVKRGSR-------------------------DETINSARDVWQAAKS-- 124
K A+ ++V+ G++ ET+ WQ KS
Sbjct: 126 AVKVAQVNLEKVREGAKVGEINAQKAEIARVQAQTTGDGREQQETVARLEAQWQGEKSAQ 185
Query: 125 QATL---------AKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAA---YQKYK 172
QAT+ A+ ++R Q LY +G S D + ++ S A Q+
Sbjct: 186 QATVKRLEAELKNAQSEWERYQKLYADGAISQSSYDTKRLSLDTITQQLSEAQANLQRID 245
Query: 173 MALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNV 220
SE+K A + QV+ + L + PID + + V
Sbjct: 246 STGRKQISEAKTALYRINATGSKQVSAAAATLNKIAEVRPIDVQAAKV 293
>ref|NP_245934.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03081.1| (AE006139) unknown [Pasteurella multocida]
Length = 375
Score = 48.1 bits (113), Expect = 1e-04
Identities = 68/300 (22%), Positives = 130/300 (42%), Gaps = 59/300 (19%)
Query: 34 KAEVLQGFLEARE-YSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAG 92
K G L+A+E + S+ G+++++ V++G +KKGDL+ I E +L A+A
Sbjct: 42 KVITASGILQAKEEVEIGSQASGQVKQIVVQEGQRVKKGDLLALIDPRIAETELKLAKAE 101
Query: 93 HKAAKALSDEVKRGSRD-ETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRD 151
++A+A + EVKR + +N AR +Q K +AT T K +++ + +
Sbjct: 102 LESAEA-NLEVKRANLVLSEVNLARH-YQLNKKEAT----TKKDIEEAENKRII------ 149
Query: 152 EAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATA 211
AS+E ++A ESA + +V + + L + +
Sbjct: 150 --------------------------ASAELRMAQSQVESAKV-KVEKASTELGYTEIRS 182
Query: 212 PIDGEVSNVLLSGGE--LSPKGFPVVLMIDLKDSW-------------LKISVPEKYLNE 256
P+DG V +V+ G+ + + PV++ + + D+ L++ VP +
Sbjct: 183 PLDGVVISVVAQSGQTLAASQQTPVLMKLAVIDTMKVNARVSEADVIDLQVGVPVHFTLL 242
Query: 257 FKVGKEFEGYIPALKKSTKFRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPLEELEN 316
+F + A+K S VK +AT++ N + + +I L++ EN
Sbjct: 243 GAPHAQFHAKLAAIKLSP---VKVSEATYYYATFEVPNPDHKLRIAMTAEVSILLDKREN 299
>ref|NP_102993.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB48779.1| (AP002997) hypothetical protein [Mesorhizobium loti]
Length = 430
Score = 48.1 bits (113), Expect = 1e-04
Identities = 57/220 (25%), Positives = 94/220 (41%), Gaps = 42/220 (19%)
Query: 46 EYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKR 105
+ +SS++ G I V VK+ +KKGD++ ++ + +L+ ++ +AEA K A A
Sbjct: 89 QVDISSQLSGIIRSVSVKENQQVKKGDVLAALDTAKLQVQIERAEASAKGAAA------- 141
Query: 106 GSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNES 165
D T+ A + A A L K Q L A+ RD + AA +S K N
Sbjct: 142 NVEDATVTLAENE-SALVRAAALTKRGMATDQSL----EAATATRDRSKAALDSAKAN-- 194
Query: 166 AAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGG 225
+A+ A +S+ ++ L + APIDG V + G
Sbjct: 195 -------LAIANADLKSQ-----------------QTDLANSTIYAPIDGIVLTRSVDPG 230
Query: 226 E--LSPKGFPVVLMI--DLKDSWLKISVPEKYLNEFKVGK 261
+ S PV+ +I DL++ L +V E + K G+
Sbjct: 231 QTVASSLQAPVLFIIAADLRNMELVAAVDEADIGAVKTGQ 270
>ref|NP_522053.1| (NC_003296) PROBABLE COBALT-ZINC-CADMIUM RESISTANCE (CATION EFFLUX
SYSTEM PROTEIN) TRANSMEMBRANE [Ralstonia solanacearum]
emb|CAD17643.1| (AL646079) PROBABLE COBALT-ZINC-CADMIUM RESISTANCE (CATION EFFLUX
SYSTEM PROTEIN) TRANSMEMBRANE [Ralstonia solanacearum]
Length = 404
Score = 47.8 bits (112), Expect = 2e-04
Identities = 54/210 (25%), Positives = 81/210 (37%), Gaps = 51/210 (24%)
Query: 45 REYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVK 104
R V +V G E+V V+ G + +G L+ +SSP ALSD+
Sbjct: 105 RTAHVVPRVAGVAEQVAVELGQPVTRGQLLAVLSSP-----------------ALSDQ-- 145
Query: 105 RGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNE 164
R QAA+ + LA+E + R + L++ G+A+ Q +A A + +
Sbjct: 146 -----------RSELQAAQQRLALAQEAHAREKRLWEQGIAAAQDYQQARTALQEARIAA 194
Query: 165 SAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSG 224
A QK A+G A + + L + AP DG V LS
Sbjct: 195 DNARQKL-AAIGAAPAGTA--------------------LNRFELRAPFDGVVVARHLSQ 233
Query: 225 GELSPKGFPVVLMIDLKDSWLKISVPEKYL 254
GE V + DL+ W +V K L
Sbjct: 234 GEAVQAEAAVFTIADLRTVWADFAVTAKDL 263
>ref|NP_404957.1| (NC_003143) putative HlyD family secretion protein [Yersinia
pestis]
sp|P58411|MACA_YERPE Probable macrolide-specific efflux protein macA precursor
emb|CAC90193.1| (AJ414148) putative HlyD family secretion protein [Yersinia pestis]
Length = 371
Score = 47.4 bits (111), Expect = 2e-04
Identities = 58/225 (25%), Positives = 100/225 (43%), Gaps = 42/225 (18%)
Query: 40 GFLEA-REYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKA 98
G L+A R+ V ++V G++EK++V+ GDH+K+G L+ I + + ++ + EA
Sbjct: 55 GKLDAVRKVDVGAQVSGQLEKLYVEIGDHVKRGQLLAMIDPQQAQNQIKEVEA------T 108
Query: 99 LSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYE 158
L D +N+ R AK++ LA T R Q+L V S Q D+A
Sbjct: 109 LQD----------LNAQR---IQAKAELHLATVTLGRQQNLAKLQVVSRQDLDQAVT--- 152
Query: 159 STKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVS 218
A + K+ A KAK S ++N L + +AP+DG+V
Sbjct: 153 ------DLAVKNAKVGTIDAQIN-----KAKASLDTAKIN-----LDYTQISAPMDGDVV 196
Query: 219 NVLLSGGE--LSPKGFPVVL-MIDLKDSWLKISVPEKYLNEFKVG 260
+ G+ ++ + P +L + D+ ++ V E + K G
Sbjct: 197 QITTLQGQTVIAAQQAPNILTLADMSTMLVQAQVSEADVINLKPG 241
>ref|NP_440708.1| (NC_000911) unknown protein [Synechocystis sp. PCC 6803]
pir||S77541 hypothetical protein slr1207 - Synechocystis sp. (strain PCC 6803)
dbj|BAA17388.1| (D90905) ORF_ID:slr1207~unknown protein [Synechocystis sp. PCC
6803]
Length = 514
Score = 47.4 bits (111), Expect = 2e-04
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 10/183 (5%)
Query: 48 SVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGS 107
++S K PGR+ ++FV++GD +KKGD + + + E A Q+EA + A A ++ +
Sbjct: 75 NISPKAPGRLVRLFVEQGDVVKKGDRIAVMENQEFFADGKQSEARLREAIARYEQARIRI 134
Query: 108 RDE------TINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTK 161
E +N R A+SQ A+ ++ Q + + L R + +A K
Sbjct: 135 PAEIDQLRAQVNQGRTRIAQAQSQLASAQARLEQAQSRIPSNIDQL--RAQVASAESRLK 192
Query: 162 YNESAAYQKYKMALGGASSESKIAAKAKESA-ALGQVNEVESYLKDVKATA-PIDGEVSN 219
E+ + + GA ++ + + E A + E +S L + + TA P G++
Sbjct: 193 LAENRRNRNQSLLQEGAITQDQYDELSNEFLNAQAGLFEAQSRLNNARTTASPEVGQIEQ 252
Query: 220 VLL 222
++
Sbjct: 253 EIV 255
>emb|CAC44350.1| (AJ410307) EmrA protein [Erwinia chrysanthemi]
Length = 391
Score = 47.4 bits (111), Expect = 2e-04
Identities = 72/349 (20%), Positives = 135/349 (38%), Gaps = 63/349 (18%)
Query: 17 GALLLGLIVLF----------YLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGD 66
G L L +IV F YL R E ++ + + S+V G + +V V D
Sbjct: 23 GILTLLMIVFFFIGCVWFAYWYLVLRHHQETDDAYVAGNQIQIMSQVNGSVARVNVDNTD 82
Query: 67 HIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSAR-----DVWQA 121
+KKGD++ + + E +A ++ L++ V R + IN + D+ Q
Sbjct: 83 FVKKGDVLVELDPTDAE------QAFERSKTTLANSV-RQVHQQMINVRQYQANIDLQQI 135
Query: 122 AKSQA--------------TLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAA 167
A +A + +E + +D + ASL+ + YAA ++ N S
Sbjct: 136 ALDKAISDLNRREVLGRANAIGREDLQHARDQVASARASLEAAKQQYAATQALVLNTSLE 195
Query: 168 YQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGEL 227
Q A+ A+++ + A A LK +P+DG VS + G
Sbjct: 196 QQP---AIAQAATDLRNAWLA---------------LKRTHIVSPVDGYVSRRSVQLGAR 237
Query: 228 SPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPALKKSTKFRVKYLSV-MGD 286
++ ++ W+ + E L ++G+ S ++ K + + MG
Sbjct: 238 VTPSSALMAVVPAAPLWVDANFKETQLANMRIGQPATIISDLYGDSVVYKGKVVGLDMGT 297
Query: 287 FATWKATNNSNTYDMKSYEVEAIPL------EELENF--RVGMSVLVTI 327
+ + N VE +P+ ++L ++ R+G+S LV +
Sbjct: 298 GSAFSLLPAQNATGNWIKVVERLPVRIELDPKQLTDYPLRIGLSTLVKV 346
>ref|NP_487687.1| (NC_003272) heterocyst specific ABC-transporter, membrane fusion
protein DevB homolog [Nostoc sp. PCC 7120]
dbj|BAB75346.1| (AP003593) ORF_ID:alr3647~heterocyst specific ABC-transporter,
membrane fusion protein DevB homolog [Nostoc sp. PCC
7120]
Length = 434
Score = 47.4 bits (111), Expect = 2e-04
Identities = 52/230 (22%), Positives = 89/230 (38%), Gaps = 46/230 (20%)
Query: 30 AYRPKAEVLQGFLEAREYSVSSKVP-----GRIEKVFVKKGDHIKKGDLVFSISS-PELE 83
A PK L G LE +S P RI ++ V++GD ++ G +V + S L+
Sbjct: 52 AIAPKITAL-GRLEPETEVISLSAPLALDGDRIAQILVEEGDEVQAGQVVAILDSRARLQ 110
Query: 84 AKLAQAEAGHKAAKALSDEVKRGSR-------------------------DETINSARDV 118
+ QAE + A+A ++VK G++ +TI
Sbjct: 111 TAVLQAEKQIRVAQAKLNQVKAGAKTGDIRAQQASVERLQAQSQGDRTGQQQTIARIEAQ 170
Query: 119 WQAAK--SQATL---------AKETYKRVQDLYDNGVASLQKRDEAYAAYESTKY---NE 164
WQ + +AT+ A+ Y+R Q LY G S D + E+ K
Sbjct: 171 WQGDRIAQEATIRKLEAELKNAEAEYQRYQQLYSEGAISSSAIDTRRLSVETAKEQLDEA 230
Query: 165 SAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPID 214
A + +E+K+A + + Q++E ++ L + P+D
Sbjct: 231 KAVLNRINSTASKELAEAKVALNRINATSNKQISEAKATLTSIAEVRPVD 280
>gb|AAG10498.1|AF279106_60 (AF279106) predicted transporter (ACRA/ACRE type) [uncultured
proteobacterium EBAC31A08]
Length = 327
Score = 47.0 bits (110), Expect = 3e-04
Identities = 63/279 (22%), Positives = 106/279 (37%), Gaps = 80/279 (28%)
Query: 18 ALLLGLIVLFYLAYRPKAEV--LQGFLEAREY----------SVSSKVPGRIEKVFVKKG 65
ALLLG L L EV L + RE+ ++ ++PG+I + V G
Sbjct: 12 ALLLGNAFLSNLEALEVLEVKMLDEYAVTREFPGKLIPSDQSKLAFEIPGKINSINVDIG 71
Query: 66 DHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQ 125
D + GD + S+ E A+L Q+ K++
Sbjct: 72 DEVILGDELASLDDREALAQLNQS---------------------------------KAK 98
Query: 126 ATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIA 185
LA++ R +L +G S+Q D+A ES + + Y Y++
Sbjct: 99 FDLAEQVLARYINLRADGHISIQDLDKA----ESDQIVAKSQYDFYRVKF---------- 144
Query: 186 AKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWL 245
+ K AP +G + N L G + G V+ ++ +
Sbjct: 145 -------------------EQTKLLAPFNGVIQNRFLDTGSVINAGVQVLEILGSSNVEA 185
Query: 246 KISVPEKYLNEFKVGKEFEGYIPALKKSTKFRVKYLSVM 284
+IS+P Y+N+ K+G E+E I + STK ++ L+ M
Sbjct: 186 RISIPMNYMNKVKIGDEYEFDIRGI--STKATLERLAPM 222
>gb|AAD33771.1|AF139107_1 (AF139107) hypothetical multidrug resistance protein [Pseudomonas
aeruginosa]
Length = 328
Score = 47.0 bits (110), Expect = 3e-04
Identities = 60/264 (22%), Positives = 112/264 (41%), Gaps = 24/264 (9%)
Query: 13 LTGGGALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGD 72
L G + L + ++ R +++ V+S++ R+E+V V+ H+ KG
Sbjct: 57 LVAVGLIALAFFLHWWFIGRHVESTDNAYVQGEITRVASQLGARVEEVLVRDNQHVDKGQ 116
Query: 73 LV-------FSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQ 125
L+ F ++ +A LA EA + A+A S V++GS SA DV SQ
Sbjct: 117 LLVRLEDADFKLAVERAQAALATREA--ELAQARSKLVQQGSL--IAASAADV---NASQ 169
Query: 126 ATL--AKETYKRVQDLYDNGVASLQK-----RDEAYAAYESTKYNESAAYQKYKMALGGA 178
ATL A+ R + L G S ++ D A + K Q+ + GA
Sbjct: 170 ATLGRAQIDLNRAEALRKPGYVSEERVTTLTADNHVARSQLAKARADLEAQRVQRDTLGA 229
Query: 179 SSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMI 238
+ +A+ ++A ++ + E L +PI+G V G+ G ++ ++
Sbjct: 230 EIK---RLEAQIASARTELAQAEINLSRTLIHSPINGLVGQRSARNGQYVQVGTHLLSLV 286
Query: 239 DLKDSWLKISVPEKYLNEFKVGKE 262
+D W++ + E + + G++
Sbjct: 287 PDEDIWVQANFKETQVGRMRDGQK 310
>ref|NP_251120.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||A83342 conserved hypothetical protein PA2430 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG05818.1|AE004670_6 (AE004670) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 334
Score = 47.0 bits (110), Expect = 3e-04
Identities = 45/233 (19%), Positives = 99/233 (42%), Gaps = 34/233 (14%)
Query: 48 SVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGS 107
++S+ V G I ++ + ++KG+L+ SI E + +AE A+A
Sbjct: 48 TLSADVSGLITRLPLSDNQPVEKGELLLSIDPARYELAVLRAERAVNVARA--------- 98
Query: 108 RDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAA 167
+ +R +A+++Q + +R L + S+++ ++A + A
Sbjct: 99 ---ALGESRAAIEASQAQLRQRRSEAQRRSALQKRSMLSVEENEKAQTDVSLAQ----AE 151
Query: 168 YQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGEL 227
+ + +LG A + ++A A + A L L+ + AP+ G V+N+ G+
Sbjct: 152 LLRNQASLGLAQANVELAEAALQQARLD--------LERTQVRAPVSGYVTNLQTREGDY 203
Query: 228 SPKGFPVVLMIDLKDSWLK----------ISVPEKYLNEFKVGKEFEGYIPAL 270
+ G P++ ++D ++ I V + E G+ F+G + ++
Sbjct: 204 AHAGVPLLALVDRDSFYVSGYFEETKLPGIHVGSRARVELMSGERFDGRVQSI 256
>ref|NP_251826.1| (NC_002516) probable secretion protein [Pseudomonas aeruginosa]
pir||G83254 probable secretion protein PA3136 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG06524.1|AE004737_10 (AE004737) probable secretion protein [Pseudomonas aeruginosa]
Length = 355
Score = 46.6 bits (109), Expect = 4e-04
Identities = 60/264 (22%), Positives = 111/264 (41%), Gaps = 24/264 (9%)
Query: 13 LTGGGALLLGLIVLFYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGD 72
L G + L + ++ R +++ V+S++ R+E+V V+ H+ KG
Sbjct: 24 LVAVGLIALAFFLHWWFIGRHVESTDNAYVQGEITRVASQLGARVEEVLVRDNQHVDKGQ 83
Query: 73 LV-------FSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDETINSARDVWQAAKSQ 125
L+ F ++ +A LA EA + A+A S V++GS SA DV SQ
Sbjct: 84 LLVRLEDADFKLAVERAQAALATREA--ELAQARSKLVQQGSL--IAASAADV---NASQ 136
Query: 126 ATL--AKETYKRVQDLYDNGVASLQK-----RDEAYAAYESTKYNESAAYQKYKMALGGA 178
ATL A+ R + L G S ++ D A + K Q+ + GA
Sbjct: 137 ATLGRAQIDLNRAEALRKPGYVSEERVTTLTADNHVARSQLAKARADLEAQRVQRDTLGA 196
Query: 179 SSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMI 238
+ +A+ ++A ++ + E L +PI G V G+ G ++ ++
Sbjct: 197 EIK---RLEAQIASARTELAQAEINLSRTLIHSPISGLVGQRSARNGQYVQVGTHLLSLV 253
Query: 239 DLKDSWLKISVPEKYLNEFKVGKE 262
+D W++ + E + + G++
Sbjct: 254 PDEDIWVQANFKETQVGRMRDGQK 277
>ref|NP_105602.1| (NC_002678) multidrug resistance efflux pump [Mesorhizobium loti]
dbj|BAB51388.1| (AP003005) multidrug resistance efflux pump [Mesorhizobium loti]
Length = 395
Score = 46.6 bits (109), Expect = 4e-04
Identities = 47/235 (20%), Positives = 96/235 (40%), Gaps = 6/235 (2%)
Query: 41 FLEAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALS 100
+++A VS K+ G +++V V + +K GD + +I + + +AQAEA
Sbjct: 86 YVQADMAFVSPKISGYVDQVKVSENQQVKAGDPLLTIDDGDYKIAVAQAEAQIATLSKTL 145
Query: 101 DEVKRGSR--DETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYE 158
D + ++ ++ A+ A ++ A A +R L V + + D+A A +
Sbjct: 146 DRIDAQTKAAQASLQQAKAQKVADQAAADNAARAQQRAAQLVKTHVGTQAQLDDAQTALD 205
Query: 159 STK---YNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDG 215
A + +G ++ +A S LG+ ++ L AP DG
Sbjct: 206 QANAALVGADAQIAAAQANIGVLEAQRAESASTLASLQLGR-DKAARDLSFTVLKAPYDG 264
Query: 216 EVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPAL 270
V N + G+L G + +++ + ++ + E L G++ + A+
Sbjct: 265 IVGNRSVEQGDLVSPGQKLAVVVPMDKLYVVANFKETQLARLVPGEKVNISVDAI 319
>ref|NP_486692.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB74351.1| (AP003590) ORF_ID:all2652~hypothetical protein [Nostoc sp. PCC
7120]
Length = 396
Score = 46.6 bits (109), Expect = 4e-04
Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 37/207 (17%)
Query: 43 EAREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISS-PELEAKLAQAEAG---HKAA-- 96
E + SV + R+ ++ VK+GD +K ++ + +LEA L AEA H+A
Sbjct: 62 EVIKLSVPNAQDSRVNQILVKEGDFVKTNQVIAILQGIDQLEADLRDAEANVRLHEAELL 121
Query: 97 KALSDEVKRGSR----------DETINSARDVWQAA--KSQATL--AKETYKRVQDLYDN 142
K E K+G + + + QAA ++ATL A+ TY+R QDL
Sbjct: 122 KVEQGEAKQGEMAAQRATIARLEAQLKAETTQKQAAINSAEATLQEAQLTYQRRQDLSTE 181
Query: 143 GVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKIAAKAKESAAL-GQVNEVE 201
G S+ D A K ++A A+ + A K L Q+ + E
Sbjct: 182 GAISIADADTA----------------KRELATAEATLMERQAELEKTITTLQAQITQEE 225
Query: 202 SYLKDVKATAPIDGEVSNVLLSGGELS 228
+ L +K P+D +S V L +++
Sbjct: 226 ATLAQLKEIRPVDVRISKVHLEKAKIA 252
>ref|NP_231053.1| (NC_002505) multidrug resistance protein VceA [Vibrio cholerae]
pir||G82203 multidrug resistance protein VceA VC1410 [imported] - Vibrio
cholerae (group O1 strain N16961)
gb|AAF94567.1| (AE004219) multidrug resistance protein VceA [Vibrio cholerae]
Length = 406
Score = 46.2 bits (108), Expect = 5e-04
Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 32/240 (13%)
Query: 49 VSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAK----------- 97
V+ V G I +V V +++K+GD++ + + L QAEA AK
Sbjct: 74 VTPAVGGIIAQVNVVDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDE 133
Query: 98 ALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAY 157
LS V+ +E A+ +AA++ AK R +DL +G S ++ A +
Sbjct: 134 GLSAMVEAQEANEQRVKAQ--LKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGF 191
Query: 158 ESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESY-------------- 203
+ N +AA K MA A+ S I ++ K +AAL V+S
Sbjct: 192 AQAQANLNAA--KAAMAQAQATKLSTIGSQ-KANAALTDNTTVDSNPEVLLAKARYEQAK 248
Query: 204 --LKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGK 261
L+ API G V+ + G G P++ ++ ++ + E L + KVG+
Sbjct: 249 IDLERTVIRAPISGIVAKRQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQ 308
>ref|NP_603413.1| (NC_003454) Acriflavin resistance protein E [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL94712.1| (AE010563) Acriflavin resistance protein E [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 357
Score = 46.2 bits (108), Expect = 5e-04
Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 52/210 (24%)
Query: 52 KVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSRDET 111
K G+I+ + + GD +KKG ++ ++ + + L ++AAKA++
Sbjct: 62 KYAGKIKSINFESGDFVKKGQVIATMDNKDYMVNLEAFSKKYEAAKAVAQN--------- 112
Query: 112 INSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKY 171
A+ + R + LY G +L K+D Y++ ++ A +
Sbjct: 113 -----------------AEVQFSRAEKLYKGG--ALAKKD-----YDNALMQKNVAISTF 148
Query: 172 KMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKG 231
K A G + + L D K AP DG + ++ G + P+G
Sbjct: 149 KEASAG-------------------LENARNTLNDTKIIAPYDGYIDKKIVEVGTVVPEG 189
Query: 232 FPVVLMIDLKDSWLKISVPEKYLNEFKVGK 261
PV+ I + + + I+ K + + K
Sbjct: 190 GPVISFISNEITDISINASLKDVENIRNAK 219
>ref|NP_478266.1| (NC_003240) ORF_ID:all7619~hypothetical protein [Nostoc sp. PCC
7120]
dbj|BAB77262.1| (AP003602) ORF_ID:all7619~hypothetical protein [Nostoc sp. PCC
7120]
Length = 570
Score = 45.8 bits (107), Expect = 7e-04
Identities = 55/241 (22%), Positives = 112/241 (45%), Gaps = 23/241 (9%)
Query: 42 LEAREYSVSSKVPG-RIEKVFVKKGDHIKKGDLVFSISSP-------ELEAKLAQAEAGH 93
L +++ V++ + G ++ ++ V+ G + KG V +SSP E + KL Q +A
Sbjct: 90 LPSQKVEVTTPISGAKVAELLVEPGARVTKGQPVAVLSSPDFVNLRVESQEKLVQGQADL 149
Query: 94 KAAKALSD-EVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGV----ASLQ 148
+ +AL+D ++ + + + N A+ A+SQ A+E Y + Q L NG +L+
Sbjct: 150 Q--QALADLKLAQQNYNRYQNIAQAEIAQAQSQVAFAQEKYNKDQSLVINGALPRRTALE 207
Query: 149 KRDE-AYAAYESTKYNESAAYQKYKMALGGASSESKIA------AKAKESAALGQVNEVE 201
+ + A A E K N + + + A + K+A + L Q+ +
Sbjct: 208 SQTQLAQAKAELVKANRRGDVIEAENQVQRAQAAVKVAKERINLSNTTYQTRLAQLGAIA 267
Query: 202 SYLKDVKATAPIDGEVSNVLLS-GGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVG 260
+ V TAPI+G+V++ ++ G G ++ + + + + ++ K L + K+G
Sbjct: 268 NNKGLVTVTAPINGQVTDRQVTIGQSFQDTGSKLMTIANDSEVFATANIYGKDLGKVKIG 327
Query: 261 K 261
+
Sbjct: 328 Q 328
>ref|NP_523022.1| (NC_003296) PUTATIVE ATP-BINDING ABC TRANSPORTER PROTEIN [Ralstonia
solanacearum]
emb|CAD18614.1| (AL646085) PUTATIVE ATP-BINDING ABC TRANSPORTER PROTEIN [Ralstonia
solanacearum]
Length = 417
Score = 45.4 bits (106), Expect = 9e-04
Identities = 70/311 (22%), Positives = 134/311 (42%), Gaps = 22/311 (7%)
Query: 37 VLQGFLEARE-YSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAE-AGHK 94
+LQG L + ++++ V G + FV+ GD + G + +S EL+ +L +AE A +
Sbjct: 25 LLQGTLRPVDAVNIAAPVEGVLLAKFVQFGDTVTAGQKLAQVSDTELKRQLREAEIASIQ 84
Query: 95 AAKALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAY 154
A +ALS + S E +AR + AA++ A+ K Q LYD G+ + + D
Sbjct: 85 AQQALSAAQQIESSTEYQAAARRL-LAAQNSLAAAQRRGKEAQMLYDKGIIARTELDAGK 143
Query: 155 AAYESTKYNESAAYQKY-KMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPI 213
++ + A + + L A + ++ E+ L ++ E+ + LK +PI
Sbjct: 144 QEIDTGQSQVDGARDEIATLRLKRAPAALRVLELDLENRQL-RLEELRAKLKATTLLSPI 202
Query: 214 DGEV-------------SNVLLSGGELSPKGFPVVLMI-DLKDSWLKISVPEKYLNEFKV 259
G V L +G ++PK V+L + D +K V E+ +
Sbjct: 203 SGVVLYPEPTDGNDPSGRKELNAGAAVTPK--DVILTVGDTSAFLIKAWVDEEDIRRVAP 260
Query: 260 GKEFEGYIPA-LKKSTKFRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPLEELENFR 318
G+ + A ++ V+ +S A + + T + + + P + + R
Sbjct: 261 GQAVRIVLGADSDRAFAGTVQRVSSQARAADGRGQGSRGTAEFEMQILFKPPTDAGRSLR 320
Query: 319 VGMSVLVTIKP 329
VG +V +++ P
Sbjct: 321 VGSAVNMSLAP 331
>ref|NP_354799.1| (NC_003062) AGR_C_3332p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK87584.1| (AE008102) AGR_C_3332p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 437
Score = 45.1 bits (105), Expect = 0.001
Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 42/221 (19%)
Query: 46 EYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKR 105
+ +SS++ G + KV V +K GD++ + + +LEA + A A K A A ++ +K
Sbjct: 95 QVDISSELSGTVRKVNVTYNTPVKSGDILAELDTNKLEADVQSARA--KLASAKANVLK- 151
Query: 106 GSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNES 165
A++ AK + +R++ L + V+S Q D A +++ +
Sbjct: 152 ----------------ARADLGSAKTSMERLRSLVQSRVSSQQDLDAAQFTHDAA----A 191
Query: 166 AAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGG 225
A Q + + A ++ ++A E L K +PIDG + + G
Sbjct: 192 ATLQVNEATVLSAEADLRLA---------------EVNLGKAKIVSPIDGVILTRSVDPG 236
Query: 226 E--LSPKGFPVVLMI--DLKDSWLKISVPEKYLNEFKVGKE 262
S PV+ I DL+ L++SV E + + + G++
Sbjct: 237 ATVASSLNAPVLFTIAGDLRHMELQVSVDEADVGKVETGQK 277
>ref|NP_662111.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM72453.1| (AE012882) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 389
Score = 45.1 bits (105), Expect = 0.001
Identities = 49/192 (25%), Positives = 83/192 (42%), Gaps = 30/192 (15%)
Query: 47 YSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPE---LEAKLAQAEAGHKAAKALSDEV 103
++VSS V G++ + + +GD ++ G V +I PE LE + + A+AG +A A +E
Sbjct: 59 FTVSSPVNGKVLRSKLVEGDSVRAGMTVAAILPPEQNALEYRESAAQAG--SASASVNEA 116
Query: 104 KRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYN 163
+ ++ A QA L Y+R LY G S + + A A
Sbjct: 117 LARQHETSVRLA---------QARLKAGRYER---LYSEGAVSKESSELATEA------- 157
Query: 164 ESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLS 223
++ +K A A +++ A A E+ V K V +P+DG+V ++
Sbjct: 158 -ASVLEKEARAAAAAVRAARMQATAAEARIDAGVAS-----KAVDVRSPVDGKVLRIIEK 211
Query: 224 GGELSPKGFPVV 235
P G P+V
Sbjct: 212 NERFVPAGTPLV 223
>ref|NP_286650.1| (NC_002655) putative membrane protein [Escherichia coli O157:H7
EDL933]
ref|NP_308991.1| (NC_002695) putative membrane protein [Escherichia coli O157:H7]
gb|AAG55260.1|AE005269_4 (AE005269) putative membrane protein [Escherichia coli O157:H7
EDL933]
dbj|BAB34387.1| (AP002553) putative membrane protein [Escherichia coli O157:H7]
Length = 380
Score = 45.1 bits (105), Expect = 0.001
Identities = 56/227 (24%), Positives = 96/227 (41%), Gaps = 42/227 (18%)
Query: 40 GFLEA-REYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKA 98
G L+A R+ V ++V G+++ + V GD +KK L+ I + E ++ + EA
Sbjct: 63 GKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEA------- 115
Query: 99 LSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYE 158
T+ R Q A+++ LA+ TY R Q L SLQ D A
Sbjct: 116 ------------TLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSLQDLDTA----- 158
Query: 159 STKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVS 218
A K A G I A+ K + A ++ ++ L + AP+ GEV+
Sbjct: 159 -------ATEMAVKQAQIGT-----IDAQIKRNQA--SLDTAKTNLDYTRIVAPMAGEVT 204
Query: 219 NVLLSGGE--LSPKGFPVVL-MIDLKDSWLKISVPEKYLNEFKVGKE 262
+ G+ ++ + P +L + D+ +K V E + K G++
Sbjct: 205 QITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQK 251
>ref|NP_356179.1| (NC_003063) AGR_L_783p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK88964.1| (AE008238) AGR_L_783p [Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 432
Score = 45.1 bits (105), Expect = 0.001
Identities = 61/304 (20%), Positives = 119/304 (39%), Gaps = 38/304 (12%)
Query: 49 VSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSR 108
++ KV G + KV V + +K GD + ++ + QA+A + + +
Sbjct: 123 IAPKVAGYVAKVNVVENQEVKAGDPLVTLDDGDYRIAFEQADAQIRTEQLSLKRIDAQII 182
Query: 109 DETINSARDVWQAAKSQATL--AKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESA 166
+ V Q A L A+ T KR +L V ++ D A A + + N
Sbjct: 183 GGEAAQEQAVAQKGALDAALRGAEITQKRATELQAKDVGTVAASDNAQVALDQARAN--- 239
Query: 167 AYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKAT--------------AP 212
+ G A+ S AKA Q E ES ++ ++ + AP
Sbjct: 240 ------VVAGEAAISS---AKANVELLRAQREEAESTIRSLQLSKDKAARDLAFTVLKAP 290
Query: 213 IDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPAL-K 271
DG + N+ + G+L G + ++ + + ++ + E L G + ++ A
Sbjct: 291 YDGVIGNLAVQTGDLVSVGKRLASLVPMNELYIDANFKETQLARVVPGSKVRVHVDAFDD 350
Query: 272 KSTKFRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPL------EEL--ENFRVGMSV 323
++ + V+ +S G + + N + ++ +P+ E+L N R G+SV
Sbjct: 351 EAIEGTVQSIS-PGSGSVFSMLPPENATGNFTKVIQRVPVRIVFSKEDLAKHNLRAGLSV 409
Query: 324 LVTI 327
+V +
Sbjct: 410 VVDV 413
>sp|P58410|MACA_ECO57 Macrolide-specific efflux protein macA precursor
Length = 371
Score = 45.1 bits (105), Expect = 0.001
Identities = 56/227 (24%), Positives = 96/227 (41%), Gaps = 42/227 (18%)
Query: 40 GFLEA-REYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKA 98
G L+A R+ V ++V G+++ + V GD +KK L+ I + E ++ + EA
Sbjct: 54 GKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEA------- 106
Query: 99 LSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYE 158
T+ R Q A+++ LA+ TY R Q L SLQ D A
Sbjct: 107 ------------TLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSLQDLDTA----- 149
Query: 159 STKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVS 218
A K A G I A+ K + A ++ ++ L + AP+ GEV+
Sbjct: 150 -------ATEMAVKQAQIGT-----IDAQIKRNQA--SLDTAKTNLDYTRIVAPMAGEVT 195
Query: 219 NVLLSGGE--LSPKGFPVVL-MIDLKDSWLKISVPEKYLNEFKVGKE 262
+ G+ ++ + P +L + D+ +K V E + K G++
Sbjct: 196 QITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQK 242
>ref|NP_532495.1| (NC_003304) HlyD family secretion protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL42811.1| (AE009136) HlyD family secretion protein [Agrobacterium tumefaciens
str. C58 (U. Washington)]
Length = 432
Score = 45.1 bits (105), Expect = 0.001
Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 42/221 (19%)
Query: 46 EYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKR 105
+ +SS++ G + KV V +K GD++ + + +LEA + A A K A A ++ +K
Sbjct: 90 QVDISSELSGTVRKVNVTYNTPVKSGDILAELDTNKLEADVQSARA--KLASAKANVLK- 146
Query: 106 GSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNES 165
A++ AK + +R++ L + V+S Q D A +++ +
Sbjct: 147 ----------------ARADLGSAKTSMERLRSLVQSRVSSQQDLDAAQFTHDAA----A 186
Query: 166 AAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGG 225
A Q + + A ++ ++A E L K +PIDG + + G
Sbjct: 187 ATLQVNEATVLSAEADLRLA---------------EVNLGKAKIVSPIDGVILTRSVDPG 231
Query: 226 E--LSPKGFPVVLMI--DLKDSWLKISVPEKYLNEFKVGKE 262
S PV+ I DL+ L++SV E + + + G++
Sbjct: 232 ATVASSLNAPVLFTIAGDLRHMELQVSVDEADVGKVETGQK 272
>ref|NP_534956.1| (NC_003305) multidrug resistance efflux pump [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL45272.1| (AE009376) multidrug resistance efflux pump [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 405
Score = 45.1 bits (105), Expect = 0.001
Identities = 61/304 (20%), Positives = 119/304 (39%), Gaps = 38/304 (12%)
Query: 49 VSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGSR 108
++ KV G + KV V + +K GD + ++ + QA+A + + +
Sbjct: 96 IAPKVAGYVAKVNVVENQEVKAGDPLVTLDDGDYRIAFEQADAQIRTEQLSLKRIDAQII 155
Query: 109 DETINSARDVWQAAKSQATL--AKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESA 166
+ V Q A L A+ T KR +L V ++ D A A + + N
Sbjct: 156 GGEAAQEQAVAQKGALDAALRGAEITQKRATELQAKDVGTVAASDNAQVALDQARAN--- 212
Query: 167 AYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKAT--------------AP 212
+ G A+ S AKA Q E ES ++ ++ + AP
Sbjct: 213 ------VVAGEAAISS---AKANVELLRAQREEAESTIRSLQLSKDKAARDLAFTVLKAP 263
Query: 213 IDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGYIPAL-K 271
DG + N+ + G+L G + ++ + + ++ + E L G + ++ A
Sbjct: 264 YDGVIGNLAVQTGDLVSVGKRLASLVPMNELYIDANFKETQLARVVPGSKVRVHVDAFDD 323
Query: 272 KSTKFRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPL------EEL--ENFRVGMSV 323
++ + V+ +S G + + N + ++ +P+ E+L N R G+SV
Sbjct: 324 EAIEGTVQSIS-PGSGSVFSMLPPENATGNFTKVIQRVPVRIVFSKEDLAKHNLRAGLSV 382
Query: 324 LVTI 327
+V +
Sbjct: 383 VVDV 386
>ref|NP_049065.1| (NC_002033) putative aromatic efflux pump membrane protein
[Novosphingobium aromaticivorans]
pir||T31137 multidrug resistance protein homolog - Sphingomonas aromaticivorans
plasmid pNL1
gb|AAD03861.1| (AF079317) putative aromatic efflux pump membrane protein
[Novosphingobium aromaticivorans]
Length = 381
Score = 44.7 bits (104), Expect = 0.001
Identities = 58/279 (20%), Positives = 112/279 (39%), Gaps = 45/279 (16%)
Query: 18 ALLLGLIVL-----FYLAYRPKAEVLQGFLEAREYSVSSKVPGRIEKVFVKKGDHIKKGD 72
A++L ++ L + L R ++ AR V+ + G +V V+ +K GD
Sbjct: 31 AIVLAVVALAWGAWYVLVARNYVSTDNAYVNARMAQVTPLIAGSAIEVLVEDTQQVKAGD 90
Query: 73 LVFSISSPELEAKLAQAEAGHKAAK-----------ALSDEVKRGSRDETINSARDVWQA 121
++ + + +AQAEA AA+ ALS ++ S + AR +
Sbjct: 91 VLVRLDQANAKIAVAQAEADLAAARRKFGQAVATNSALSAQIDTSSAG--LVQARARLRT 148
Query: 122 AKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAY-------ESTKYNESAAYQKYKMA 174
A+S+ A+ +R + + +G S ++ +A AY E+ + S ++A
Sbjct: 149 AESEFDKARIDLRRREAVIASGAISGEELTQARKAYASANAALEAARGGISEVTSARRVA 208
Query: 175 LGGASSESKI-------------AAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVL 221
G ++ + AAKA+ AAL + E AP+ G VS +
Sbjct: 209 QGQLAANDALVRGSSVDTDPAVQAAKARLDAALLDLQRTE-------IRAPVSGVVSRLQ 261
Query: 222 LSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVG 260
+ G+ G ++ ++ + ++ + E L + G
Sbjct: 262 IQVGQRLSPGQTIMTIVPIDKLYVDANFKEGQLGRVRPG 300
>ref|NP_478279.1| (NC_003240) ORF_ID:all7632~hypothetical protein [Nostoc sp. PCC
7120]
dbj|BAB77275.1| (AP003602) ORF_ID:all7632~hypothetical protein [Nostoc sp. PCC
7120]
Length = 561
Score = 44.7 bits (104), Expect = 0.001
Identities = 58/241 (24%), Positives = 113/241 (46%), Gaps = 23/241 (9%)
Query: 42 LEAREYSVSSKVPG-RIEKVFVKKGDHIKKGDLVFSISSPEL-------EAKLAQAEAGH 93
L ++ V++ + G ++ ++ V+ G ++KKG V +SSP+L + KLAQ +A
Sbjct: 90 LPSQRVEVTTPISGAKVVELLVEPGANVKKGQPVAVVSSPDLVELRVNSQEKLAQGQADL 149
Query: 94 KAAKA-LSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNG-------VA 145
+ A+A L + R + I +A ++ Q A+SQ A+E Y + + L D G +
Sbjct: 150 RQAQADLRLAQQNYDRYQQI-AAAEIAQ-AQSQVAFAQEKYNKDRQLADAGALPRRTALE 207
Query: 146 SLQKRDEAYAAYESTKYNESAAYQKYKMALGGAS---SESKI-AAKAKESAALGQVNEVE 201
S + EA A + + K+ +S ++SKI + L Q+
Sbjct: 208 SQTQLAEAKAKLTTANSRRDVIEAEAKLKTAQSSVELAQSKIQLSSTTYQTRLSQLGNRA 267
Query: 202 SYLKDVKATAPIDGEVSNVLLSGGE-LSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVG 260
+ V API G+V++ ++ G+ G ++ +++ + ++ EK L++ K G
Sbjct: 268 NAQGLVTVNAPISGKVADREVTLGQTFQDAGGKLMTIVNDSRVFATANIYEKDLDKIKTG 327
Query: 261 K 261
+
Sbjct: 328 Q 328
>ref|NP_519974.1| (NC_003295) PROBABLE MULTIDRUG RESISTANCE TRANSMEMBRANE PROTEIN
[Ralstonia solanacearum]
emb|CAD15555.1| (AL646067) PROBABLE MULTIDRUG RESISTANCE TRANSMEMBRANE PROTEIN
[Ralstonia solanacearum]
Length = 385
Score = 43.1 bits (100), Expect = 0.004
Identities = 71/316 (22%), Positives = 133/316 (41%), Gaps = 45/316 (14%)
Query: 49 VSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAA-----------K 97
V+ + G I +V V +KKGD++ I + + L QAEA +A
Sbjct: 64 VTPAIDGTIAEVRVSDTQAVKKGDVLVVIDPTDAKLALEQAEAQLGSAVRRVRGYVANDS 123
Query: 98 ALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVAS---LQKRDEAY 154
+L ++ DE +A D++ +A++ AK +R + L +G S L K A+
Sbjct: 124 SLGAQIIAREADEK-RAAADLF-SAQADFERAKIDLRRREALVASGSVSGEELTKARNAH 181
Query: 155 AAYESTKYNESAAYQK--YKMALGGASSESKIAAKAKE------SAALGQVNEVESYLKD 206
A ++ + ++A + A+G + + + A A E + A + ++ L
Sbjct: 182 ATADAARAAPASAQARANRNAAVGSRQANAVLIANATEDTNPEVALARAKRDQAAVDLGR 241
Query: 207 VKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEGY 266
AP+DG V+ + G+ G ++ ++ ++D + + E L ++G+
Sbjct: 242 TVIRAPVDGVVAKRQVQLGQRVKSGTALLSIVPVQDMHVDANFKEVQLENVRIGQ----- 296
Query: 267 IPALKKSTKF--RVKYLSVM-----GDFATWKATNNSNTYDMKSYEVEAIPLE------E 313
PA K+ + Y V+ G A + A N V+ +P+ E
Sbjct: 297 -PATVKADIYGGSASYRGVVEGFSGGSGAAFAAIPAQNATGNWIKVVQRLPVRIKLDAAE 355
Query: 314 LEN--FRVGMSVLVTI 327
LE +VG+S++VTI
Sbjct: 356 LEKHPLKVGLSMVVTI 371
>ref|NP_349267.1| (NC_003030) Pyruvate carboxylase, PYKA [Clostridium acetobutylicum]
gb|AAK80607.1|AE007763_6 (AE007763) Pyruvate carboxylase, PYKA [Clostridium acetobutylicum]
Length = 1144
Score = 43.1 bits (100), Expect = 0.004
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 34 KAEVLQGFLEA---REYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAE 90
K+E+++ + A + + + +PG + KVFVK GD +KKGD + I + ++E ++ +E
Sbjct: 1060 KSEIVEEIVIADSSNKKEIGASIPGNVVKVFVKPGDKVKKGDSLMVIEAMKMETNVSVSE 1119
Query: 91 AG 92
G
Sbjct: 1120 DG 1121
>ref|NP_107647.1| (NC_002678) component of multidrug efflux system [Mesorhizobium
loti]
dbj|BAB53433.1| (AP003011) component of multidrug efflux system [Mesorhizobium
loti]
Length = 380
Score = 42.7 bits (99), Expect = 0.006
Identities = 51/223 (22%), Positives = 87/223 (38%), Gaps = 53/223 (23%)
Query: 40 GFLEAR-EYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKA 98
G + AR E +++ +V G+I + V G H+ GD++ I +
Sbjct: 58 GSVRARTESALAFRVNGKITERLVDIGQHVVPGDVLARIDPTDY---------------- 101
Query: 99 LSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYE 158
D ++ SA+ AA+ Q + T KR + L+ A + ++A A++
Sbjct: 102 ----------DLSVKSAQAALDAAERQVETTELTRKRAEQLFTRNFAPKSQLEQATLAHD 151
Query: 159 STKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVS 218
+A + ++L Q Y D+KA DG V+
Sbjct: 152 QA-----------------------VATRDSARSSLDQAKNQVGYT-DLKADR--DGIVT 185
Query: 219 NVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGK 261
V G++ G PVV + + + I+VPE + EFK GK
Sbjct: 186 AVNADVGQVVGSGTPVVSVAVDGEKEVLIAVPEMEIAEFKPGK 228
>ref|NP_104714.1| (NC_002678) RND efflux membrane fusion protein precursor
[Mesorhizobium loti]
dbj|BAB50500.1| (AP003002) RND efflux membrane fusion protein precursor
[Mesorhizobium loti]
Length = 465
Score = 42.7 bits (99), Expect = 0.006
Identities = 27/86 (31%), Positives = 44/86 (50%), Gaps = 1/86 (1%)
Query: 177 GASSESKI-AAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVV 235
G S+S + A+A SA+ QV ++++ L + TAP G V + G+ G VV
Sbjct: 156 GVGSDSTLDTARAAASASASQVTKLQAVLDQKQLTAPFAGTVGIPKIDIGQYMAPGTAVV 215
Query: 236 LMIDLKDSWLKISVPEKYLNEFKVGK 261
+ DL + S+PE+ L K+G+
Sbjct: 216 TLQDLDTMRVDFSIPEQQLPLLKIGQ 241
>sp|P75830|MACA_ECOLI Macrolide-specific efflux protein macA precursor
dbj|BAA35597.1| (D90725) MtrC protein [Escherichia coli]
Length = 371
Score = 42.4 bits (98), Expect = 0.007
Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 42/227 (18%)
Query: 40 GFLEA-REYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKA 98
G L+A R+ V ++V G+++ + V GD +KK L+ I + E ++ + EA
Sbjct: 54 GKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEA------- 106
Query: 99 LSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYE 158
T+ R Q A+++ LA+ TY R Q L S Q D A
Sbjct: 107 ------------TLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTA----- 149
Query: 159 STKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVS 218
A K A G I A+ K + A ++ ++ L + AP+ GEV+
Sbjct: 150 -------ATEMAVKQAQIGT-----IDAQIKRNQA--SLDTAKTNLDYTRIVAPMAGEVT 195
Query: 219 NVLLSGGE--LSPKGFPVVL-MIDLKDSWLKISVPEKYLNEFKVGKE 262
+ G+ ++ + P +L + D+ +K V E + K G++
Sbjct: 196 QITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPGQK 242
>ref|NP_253281.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||A83071 hypothetical protein PA4591 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG07979.1|AE004873_1 (AE004873) hypothetical protein [Pseudomonas aeruginosa]
Length = 425
Score = 42.4 bits (98), Expect = 0.007
Identities = 49/302 (16%), Positives = 121/302 (39%), Gaps = 14/302 (4%)
Query: 38 LQGFLE-AREYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAA 96
L G LE R ++++ G +E + V+ G + +G + + + E+ ++ +A++ A
Sbjct: 58 LVGRLEPGRVVTLAAPFAGNVEALLVEPGQRVAEGQELLRMDTREIAVQVREAQSALLKA 117
Query: 97 KALSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAA 156
+ +++ R E + R ++A+ + + + ++L+ G+ + D+
Sbjct: 118 RRTLQDLRDWERGEDMARVRRALRSAQLAQSSTERKLRETRELFQRGIVPRNELDDLEQQ 177
Query: 157 YESTKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGE 216
+ + AA ++ + E++ A+ + A + +++ L AP G
Sbjct: 178 ASQQRMDLEAARREVESTRAKGQGENRQIAEMDLANASVKYETLQAQLDGRTVRAPFAGI 237
Query: 217 V-----------SNVLLSGGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEG 265
V S + G +G + + ++ + V E +N+ + G+ E
Sbjct: 238 VVAAPGLAGEQGSREPVQAGSKLGQGQALFGLASVERLKVSAKVSELDINQLREGQAVEI 297
Query: 266 YIPALKKSTKFRVKYLSVMGDFATWKATNNSNTYDMKSYEVEAIPLEELENFRVGMSVLV 325
+ +T V ++ +G A + + V + +L+ R+GMS +
Sbjct: 298 SGDGFEGTTLAGV--IAALGGQALPGMAQGGSPQFEVTVSVAPLDPRQLQKIRLGMSAKL 355
Query: 326 TI 327
T+
Sbjct: 356 TV 357
>ref|NP_415399.1| (NC_000913) putative membrane protein [Escherichia coli K12]
pir||F64826 probable membrane protein b0878 - Escherichia coli
gb|AAC73965.1| (AE000189) putative membrane protein [Escherichia coli K12]
dbj|BAB64541.1| (AB071145) macrolide-specific ABC-type efflux carrier [Escherichia
coli]
Length = 380
Score = 42.4 bits (98), Expect = 0.007
Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 42/227 (18%)
Query: 40 GFLEA-REYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKA 98
G L+A R+ V ++V G+++ + V GD +KK L+ I + E ++ + EA
Sbjct: 63 GKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEA------- 115
Query: 99 LSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYE 158
T+ R Q A+++ LA+ TY R Q L S Q D A
Sbjct: 116 ------------TLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTA----- 158
Query: 159 STKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVS 218
A K A G I A+ K + A ++ ++ L + AP+ GEV+
Sbjct: 159 -------ATEMAVKQAQIGT-----IDAQIKRNQA--SLDTAKTNLDYTRIVAPMAGEVT 204
Query: 219 NVLLSGGE--LSPKGFPVVL-MIDLKDSWLKISVPEKYLNEFKVGKE 262
+ G+ ++ + P +L + D+ +K V E + K G++
Sbjct: 205 QITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPGQK 251
>ref|NP_233028.1| (NC_002506) AcrA/AcrE family protein [Vibrio cholerae]
pir||E82436 AcrA/AcrE family protein VCA0639 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF96540.1| (AE004393) AcrA/AcrE family protein [Vibrio cholerae]
Length = 334
Score = 42.4 bits (98), Expect = 0.007
Identities = 47/206 (22%), Positives = 81/206 (38%), Gaps = 52/206 (25%)
Query: 48 SVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKRGS 107
S++++ GR+ ++V D +KK ++ IS+ + A L A+A +A A
Sbjct: 51 SLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATA--------- 101
Query: 108 RDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAA 167
Q ++QA L R + L+ G S + D A A S
Sbjct: 102 ------------QNREAQAQL-----NRYRQLFPKGAISKDQMDSAEARARS-------- 136
Query: 168 YQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGEL 227
A+ +S AA + +LG N TAP DG V+ ++ GE
Sbjct: 137 --------ADAAVKSAQAAVEQAKESLGYTN----------ITAPYDGIVTQRMVELGET 178
Query: 228 SPKGFPVVLMIDLKDSWLKISVPEKY 253
G P++ L + ++ +P++Y
Sbjct: 179 VAPGTPLLRGFSLDELRVETEIPQRY 204
>ref|NP_539276.1| (NC_003317) periplasmic component of efflux system [Brucella
melitensis]
gb|AAL51540.1| (AE009478) macrolide-specific efflux protein MacA [Brucella
melitensis]
Length = 408
Score = 42.4 bits (98), Expect = 0.007
Identities = 36/136 (26%), Positives = 64/136 (46%), Gaps = 27/136 (19%)
Query: 18 ALLLGLIVLFYLAYRPKAE--------VLQGFLE-----------AREYSVSSKVPGRIE 58
A+++G FY +Y+ E V +G +E R +V ++V G+++
Sbjct: 35 AIIIGAGWYFYGSYKADGEKSSYLAETVTRGDIENAITAVGTLSALRSVNVGAQVSGQLK 94
Query: 59 KVFVKKGDHIKKGDLVFSISSPELEAK--LAQAEAGHKAAKALSDEVK------RGSRDE 110
V V+ GDH+K+G L+ I E K +A A+ + A+ LS + + +R +
Sbjct: 95 SVKVEVGDHVKQGQLIAEIDPSPFEKKVEIAGAQLDNLKAQLLSKDAQLTLKKLNAARQK 154
Query: 111 TINSARDVWQAAKSQA 126
++ + R V QA QA
Sbjct: 155 SLLATRGVSQATVDQA 170
>ref|NP_230560.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||E82263 conserved hypothetical protein VC0913 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94075.1| (AE004175) conserved hypothetical protein [Vibrio cholerae]
Length = 352
Score = 42.0 bits (97), Expect = 0.010
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 11/162 (6%)
Query: 109 DETINSARDVWQAAKSQATLAKETYKRVQDLY----DNGVASLQKRDEAYAAYESTKYNE 164
+++++ A +V A A + K+ Q L D A+L + +AY E K E
Sbjct: 57 EQSVDIAAEVAGKVDMIAVQANQQVKKGQILIKLDDDKAQAALVEA-KAYLQDEQRKLTE 115
Query: 165 SAAYQKYKMALGGASSESKI-AAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLS 223
Y++ + A + ++I A +A+ ++N ++ L D+ TAP DG V + S
Sbjct: 116 ---YER--LLKRNAITPTEIDAQRARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFS 170
Query: 224 GGELSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGKEFEG 265
G+ G ++ + +L L + +PE+YL + G + +G
Sbjct: 171 RGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKVQG 212
>ref|NP_489013.1| (NC_003272) heterocyst specific ABC-transporter, membrane fusion
protein DevB homolog [Nostoc sp. PCC 7120]
dbj|BAB76672.1| (AP003598) ORF_ID:alr4973~heterocyst specific ABC-transporter,
membrane fusion protein DevB homolog [Nostoc sp. PCC
7120]
Length = 399
Score = 42.0 bits (97), Expect = 0.010
Identities = 64/275 (23%), Positives = 108/275 (39%), Gaps = 63/275 (22%)
Query: 33 PKAEVLQGFLEAREYSVSSKV-PGRIEKVFVKKGDHIKKGDLVFSISSPE---------- 81
P+ EV+Q SVS RI ++ VK+GD I KG ++ + + +
Sbjct: 70 PQGEVVQ-------VSVSQTAGSNRIAELLVKQGDRINKGQIIAILDNRDTRLAALNRAK 122
Query: 82 -----LEAKLAQAEAGHK-----AAKALSDEVKRGSRDETINSARDVWQAAKSQATLAKE 131
+++LAQ +AG K A +A E+ R E V + +++ A+
Sbjct: 123 QQVAVAQSQLAQVKAGAKQGEIAAQQATIAELAAELRQEVAARVATV-RRLEAEVRNAQI 181
Query: 132 TYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALGGASSESKI------- 184
Y+R Q L +G S+ RD S K A + + AL S S+
Sbjct: 182 EYQRYQSLQADGAVSVSIRD-------SKKLTLETAEESLREALANRSQTSETLQERLRQ 234
Query: 185 -----------------AAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNV-LLSGGE 226
AA+A+ +A V E ++ L +P G++ + L G
Sbjct: 235 AKATLNQIAEVRPTDVQAAQAEVESAKAAVQEAQANLNLTYVKSPKAGQILKIHTLVGEV 294
Query: 227 LSPKGFPVVLMIDLKDSWLKISVPEKYLNEFKVGK 261
+S KG +V + ++ V E +N K+G+
Sbjct: 295 VSDKG--IVEIGQTNQMYVVAEVYEVDINRVKIGQ 327
>ref|NP_441885.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
pir||S76434 hypothetical protein sll0141 - Synechocystis sp. (strain PCC 6803)
dbj|BAA18563.1| (D90915) ORF_ID:sll0141~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 467
Score = 42.0 bits (97), Expect = 0.010
Identities = 54/270 (20%), Positives = 109/270 (40%), Gaps = 40/270 (14%)
Query: 45 REYSVSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKA--AKALSDE 102
RE S+ +++ GR++++ V GD ++ +++ I L + QA+A A ++ L+ +
Sbjct: 74 REASIKAQIEGRLQRLPVDVGDRVRGEEILAEIEDDLLLGAVDQAKAEKMAQRSEVLTAQ 133
Query: 103 VKRGSRDETINSARDVWQAAKS--------------QATLAKETYK----RVQDLYDNGV 144
+ G + AR Q A++ QA L + + R + L + G
Sbjct: 134 SQVGDAQIRVEQARLQLQQAQADIIRLETSLNARIEQARLEVDQTQADAARFRLLAEEGA 193
Query: 145 ASLQKRDEAYA----AYESTKYNESAAYQKYKMALGGASSESKI---------------- 184
Q+ ++A A E + +++A Q+ A A + S+I
Sbjct: 194 GGAQQAEQAETRARQAKEILRNEQASASQQLSQAKTAAKTASQILNSAIAQVQIEQQRVG 253
Query: 185 AAKAKESAALGQVNEVESYLKDVKATAPIDGEVSNVLLSGGELSPKGFPVVLMIDLKDSW 244
AA A+ +A + + ++ + AP G V L G L G ++ + D +
Sbjct: 254 AATAQMNAQRASIEQAQTRQQYATVRAPFPGRVLRRLSEPGNLVQPGTEILQLGDFRQLE 313
Query: 245 LKISVPEKYLNEFKVGKEFEGYIPALKKST 274
+ + V E L + + ++ + A T
Sbjct: 314 IDVQVSELQLAQIALQQKVNVKLDAFPGQT 343
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.311 0.129 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,499,038
Number of Sequences: 1026957
Number of extensions: 7631937
Number of successful extensions: 18756
Number of sequences better than 1.0e-02: 133
Number of HSP's better than 0.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 18607
Number of HSP's gapped (non-prelim): 153
length of query: 329
length of database: 324,149,939
effective HSP length: 121
effective length of query: 208
effective length of database: 199,888,142
effective search space: 41576733536
effective search space used: 41576733536
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 97 (42.0 bits)