BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646101|ref|NP_208283.1| conserved hypothetical
nifU-like protein [Helicobacter pylori 26695]
(89 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224103.1| (NC_000921) putative [Helicobacter pylori ... 177 2e-44
ref|NP_282767.1| (NC_002163) nifU protein homolog [Campylob... 90 6e-18
ref|NP_012884.1| (NC_001143) Nifu-like protein; Nfu1p [Sacc... 60 4e-09
pir||S50134 nitrogen fixation protein nifU - Nostoc sp. (PC... 60 7e-09
ref|NP_244286.1| (NC_002570) nitrogen fixation protein (Nif... 60 7e-09
ref|NP_653418.1| (NC_003995) NifU-like, NifU-like domain [B... 60 7e-09
ref|NP_442853.1| (NC_000911) NifU protein [Synechocystis sp... 60 7e-09
sp|Q00241|NIFU_PLEBO NITROGEN FIXATION PROTEIN NIFU >gi|485... 59 9e-09
ref|NP_371460.1| (NC_002758) hypothetical protein [Staphylo... 59 1e-08
sp|Q43885|NIFU_ANAAZ NITROGEN FIXATION PROTEIN NIFU >gi|762... 58 2e-08
ref|NP_485498.1| (NC_003272) nitrogen fixation protein [Nos... 58 2e-08
ref|NP_391102.1| (NC_000964) similar to NifU protein homolo... 58 3e-08
gb|AAB88877.1| (U95179) putative NifU protein [Prunus armen... 57 3e-08
gb|AAC33371.1| (AF001780) NifU [Cyanothece sp. PCC 8801] 57 4e-08
gb|AAD22656.1|AC007138_20 (AC007138) putative NifU-like met... 57 6e-08
ref|NP_567219.1| (NM_116425) putative NifU-like metalloclus... 57 6e-08
ref|NP_485352.1| (NC_003272) NifU like protein [Nostoc sp. ... 56 7e-08
sp|P33179|NIFU_ANASL NIFU PROTEIN >gi|2126543|pir||I39609 n... 56 7e-08
emb|CAA49299.1| (X69584) YKL253 [Saccharomyces cerevisiae] 56 7e-08
ref|NP_568715.1| (NM_124372) Expressed protein [Arabidopsis... 55 1e-07
dbj|BAA97015.1| (AB024032) gene_id:K9P8.8~pir||T09896~stron... 55 1e-07
gb|AAA93019.1| (U49859) NifU2 [Anabaena variabilis] 55 1e-07
ref|NP_221029.1| (NC_000963) unknown [Rickettsia prowazekii... 54 3e-07
pir||T40430 conserved hypothetical NifU-like protein - fiss... 54 4e-07
gb|AAF82636.1|AF167538_3 (AF167538) NifU [Trichodesmium sp.... 54 5e-07
gb|AAD03815.1| (AF055034) NifU [Trichodesmium sp. IMS101] 54 5e-07
ref|NP_360655.1| (NC_003103) unknown [Rickettsia conorii] >... 53 8e-07
emb|CAD21196.1| (AL669999) conserved hypothetical protein [... 52 2e-06
ref|NP_595452.1| (NC_003423) conserved hypothetical protein... 51 2e-06
gb|AAM63593.1| (AY086527) nitrogen fixation like protein [A... 51 3e-06
ref|NP_567735.1| (NM_118724) nitrogen fixation like protein... 51 3e-06
pir||T04246 hypothetical protein F20B18.20 - Arabidopsis th... 51 3e-06
gb|AAD17270.1| (AF119361) NifV [Frankia sp. EuIK1] 50 5e-06
gb|AAL49077.1| (AY071455) RE53788p [Drosophila melanogaster] 50 7e-06
gb|AAF16622.1| (AF182444) TO42 [Drosophila melanogaster] >g... 50 7e-06
gb|AAL49319.1| (AY071697) RH16335p [Drosophila melanogaster] 50 7e-06
gb|AAG22462.1| (AE003122) CG18856 gene product [Drosophila ... 50 7e-06
gb|EAA06366.1| (AAAB01008846) agCP13132 [Anopheles gambiae ... 50 7e-06
ref|NP_069466.1| (NC_000917) nifU protein (nifU-3) [Archaeo... 49 9e-06
ref|NP_501917.1| (NM_069516) Yeast hypothetical protein YKE... 49 1e-05
gb|AAF72894.1|AF228511_2 (AF228511) NU1 [Trypanosoma cruzi] 49 1e-05
ref|NP_662665.1| (NC_002932) NifU protein, putative [Chloro... 49 2e-05
gb|AAA22184.1| (L34354) nitrogen fixation protein [Azospiri... 47 4e-05
ref|NP_465920.1| (NC_003210) similar to NifU protein [Liste... 47 6e-05
gb|AAM50738.1| (AY118878) GM32035p [Drosophila melanogaster] 46 8e-05
ref|NP_471826.1| (NC_003212) similar to NifU protein [Liste... 46 1e-04
ref|NP_056515.1| (NM_015700) HIRA interacting protein 5; HI... 46 1e-04
sp|P40432|YVN2_AZOVI Hypothetical 10.3 kDa protein in vnfA ... 46 1e-04
gb|AAD27742.1|AF132967_1 (AF132967) CGI-33 protein [Homo sa... 46 1e-04
ref|NP_384507.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 45 1e-04
ref|NP_540725.1| (NC_003317) NIFU PROTEIN [Brucella meliten... 45 1e-04
sp|P23121|NIFU_AZOCH NITROGEN FIXATION PROTEIN NIFU >gi|280... 45 2e-04
ref|NP_445545.1| (NC_002179) nifU protein, putative [Chlamy... 45 2e-04
ref|NP_225056.1| (NC_000922) NifU-related protein [Chlamydo... 45 2e-04
ref|NP_106002.1| (NC_002678) hypothetical protein [Mesorhiz... 45 2e-04
ref|NP_623332.1| (NC_003869) Thioredoxin-like proteins and ... 45 2e-04
sp|Q07178|NIU1_RHOCA Nitrogen fixation protein nifU 1 >gi|4... 45 2e-04
sp|P05340|NIFU_AZOVI Nitrogen fixation protein nifU >gi|420... 45 2e-04
gb|AAA22167.1| (M17349) nifU protein [Azotobacter vinelandii] 45 2e-04
sp|Q43909|NIFU_AZOBR NITROGEN FIXATION PROTEIN NIFU >gi|159... 45 2e-04
ref|NP_353383.1| (NC_003062) AGR_C_616p [Agrobacterium tume... 44 3e-04
ref|NP_281434.1| (NC_002163) nifU protein homolog [Campylob... 44 3e-04
sp|Q01180|NIFU_RHOSH NITROGEN FIXATION PROTEIN NIFU >gi|282... 44 4e-04
ref|NP_064429.1| (NM_020045) histone cell cycle regulation ... 44 5e-04
dbj|BAB22965.1| (AK003730) data source:MGD, source key:MGI:... 44 5e-04
gb|AAF76865.1|AF232919_4 (AF232919) NifU-like protein [Sino... 44 5e-04
gb|AAG27073.1|AF105225_9 (AF030414) NifU [Gluconacetobacter... 44 5e-04
ref|NP_566673.1| (NM_112989) expressed protein [Arabidopsis... 43 6e-04
ref|NP_175550.1| (NM_104017) unknown protein [Arabidopsis t... 42 0.001
gb|AAG52627.1|AC024261_14 (AC024261) unknown protein; 90320... 42 0.001
gb|AAK70910.1|AC087551_9 (AC087551) hypothetical protein [O... 42 0.001
ref|NP_207019.1| (NC_000915) nifU-like protein [Helicobacte... 42 0.001
ref|NP_220239.1| (NC_000117) NifU-related protein [Chlamydi... 42 0.002
sp|Q10373|NIU2_RHOCA Nitrogen fixation protein nifU 2 >gi|9... 41 0.003
ref|NP_296477.1| (NC_002620) NifU-related protein [Chlamydi... 39 0.009
>ref|NP_224103.1| (NC_000921) putative [Helicobacter pylori J99]
ref|NP_208283.1| (NC_000915) conserved hypothetical nifU-like protein
[Helicobacter pylori 26695]
pir||D64706 conserved hypothetical nifU-like protein - Helicobacter pylori
gb|AAD08534.1| (AE000648) conserved hypothetical nifU-like protein [Helicobacter
pylori 26695]
gb|AAD06966.1| (AE001561) putative [Helicobacter pylori J99]
Length = 89
Score = 177 bits (450), Expect = 2e-44
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MIEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK 60
MIEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK
Sbjct: 1 MIEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK 60
Query: 61 NVIERQLKMDIHPNLEVVCLENAKEFDKL 89
NVIERQLKMDIHPNLEVVCLENAKEFDKL
Sbjct: 61 NVIERQLKMDIHPNLEVVCLENAKEFDKL 89
>ref|NP_282767.1| (NC_002163) nifU protein homolog [Campylobacter jejuni]
pir||E81260 nifU protein homolog Cj1639 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAA76497.1| (Y16882) hypothetical protein [Campylobacter jejuni]
emb|CAB73627.1| (AL139079) nifU protein homolog [Campylobacter jejuni]
Length = 90
Score = 89.7 bits (221), Expect = 6e-18
Identities = 47/90 (52%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 1 MIEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK 60
M+ FSDE+L PV+ +EK P L +DGG +E LG+K+ +YV L GACK C+SS TLK
Sbjct: 1 MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVHLIGACKGCASSGTTLK 60
Query: 61 NVIERQLKMDIHPNLEVVCLE-NAKEFDKL 89
+ERQLK+DIHP + ++ L A EF KL
Sbjct: 61 YGLERQLKIDIHPEITIINLNGGADEFAKL 90
>ref|NP_012884.1| (NC_001143) Nifu-like protein; Nfu1p [Saccharomyces cerevisiae]
sp|P32860|YKE0_YEAST Hypothetical 29.2 kDa protein in SPC42-PTM1 intergenic region
pir||S37861 nitrogen fixation protein nifU homolog YKL040c - yeast
(Saccharomyces cerevisiae)
emb|CAA81875.1| (Z28040) ORF YKL040c [Saccharomyces cerevisiae]
Length = 256
Score = 60.5 bits (145), Expect = 4e-09
Identities = 37/93 (39%), Positives = 59/93 (62%), Gaps = 9/93 (9%)
Query: 6 DEDLQKPVRIVIE-KIRPYLLKDGGNIEVLG--VKSMKIYVALEGACKTCSSSKITLKNV 62
DE++ + + +I+ +IRP +L+DGG+I+ G K+ +Y+ L+GAC +CSSS++TLK
Sbjct: 150 DEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSSSEVTLKYG 209
Query: 63 IERQLKMDIHPNLEVVCLEN------AKEFDKL 89
IE LK + EV+ + + KEFDKL
Sbjct: 210 IESMLKHYVDEVKEVIQIMDPEQEIALKEFDKL 242
>pir||S50134 nitrogen fixation protein nifU - Nostoc sp. (PCC 6720)
(fragment)
emb|CAA83509.1| (Z31716) nifU [Nostoc sp. PCC 6720]
prf||2021269A dinitrogenase reductase [Nostoc sp.]
Length = 87
Score = 59.7 bits (143), Expect = 7e-09
Identities = 29/65 (44%), Positives = 45/65 (68%)
Query: 14 RIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIHP 73
+++ E++RP L+ DGG++E+ V + V L+GAC +CSSS TLK IE +L+ I+P
Sbjct: 20 KVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINP 79
Query: 74 NLEVV 78
+L VV
Sbjct: 80 SLVVV 84
>ref|NP_244286.1| (NC_002570) nitrogen fixation protein (NifU protein) [Bacillus
halodurans]
dbj|BAB07138.1| (AP001518) nitrogen fixation protein (NifU protein) [Bacillus
halodurans]
Length = 79
Score = 59.7 bits (143), Expect = 7e-09
Identities = 28/64 (43%), Positives = 46/64 (71%)
Query: 8 DLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQL 67
++ + V+ V++K+RP+LL+DGG++E++ V+ + V L GAC +C SS ITLK IER L
Sbjct: 6 EMHEQVKEVLDKLRPFLLRDGGDVELVDVEDGIVKVRLLGACGSCPSSTITLKAGIERAL 65
Query: 68 KMDI 71
++
Sbjct: 66 LEEV 69
>ref|NP_653418.1| (NC_003995) NifU-like, NifU-like domain [Bacillus anthracis
A2012] [Bacillus anthracis str. A2012]
Length = 95
Score = 59.7 bits (143), Expect = 7e-09
Identities = 29/69 (42%), Positives = 48/69 (69%)
Query: 9 LQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLK 68
+Q+ V V++K+RP+LL+DGG++E++ ++ + + L GAC +C SS ITLK IER L
Sbjct: 6 MQEQVLEVLDKLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGIERALL 65
Query: 69 MDIHPNLEV 77
++ +EV
Sbjct: 66 EEVPGVIEV 74
>ref|NP_442853.1| (NC_000911) NifU protein [Synechocystis sp. PCC 6803]
pir||S76753 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA18665.1| (D90916) NifU protein [Synechocystis sp. PCC 6803]
Length = 76
Score = 59.7 bits (143), Expect = 7e-09
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 13 VRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIH 72
V V++++RPYL+ DGGN+EV+ + + V L+GAC +C SS +TLK IER+L+ I
Sbjct: 8 VETVLDELRPYLMADGGNVEVVELDGPIVKVRLQGACGSCPSSTMTLKMGIERKLREMIP 67
Query: 73 PNLEV 77
EV
Sbjct: 68 EIAEV 72
>sp|Q00241|NIFU_PLEBO NITROGEN FIXATION PROTEIN NIFU
pir||PQ0649 nitrogen fixation protein nifU - Plectonema boryanum (fragment)
dbj|BAA00567.1| (D00666) NifU protein [Plectonema boryanum]
prf||1808318C nifU gene [Plectonema boryanum]
Length = 205
Score = 59.3 bits (142), Expect = 9e-09
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 10/85 (11%)
Query: 3 EFSDEDLQKPV----------RIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTC 52
E S+ ++KP+ +++ E++RP L+ DGG++E+ V + V L+GAC +C
Sbjct: 118 EISEAQIRKPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDFVKVTLKGACGSC 177
Query: 53 SSSKITLKNVIERQLKMDIHPNLEV 77
+SS TLK+ +E +L++ + P L V
Sbjct: 178 ASSTATLKDAVEAKLRLRVLPTLVV 202
>ref|NP_371460.1| (NC_002758) hypothetical protein [Staphylococcus aureus subsp.
aureus Mu50]
ref|NP_374058.1| (NC_002745) hypothetical protein, similar to nitrogen fixation
protein NifU [Staphylococcus aureus subsp. aureus N315]
ref|NP_645635.1| (NC_003923) ORFID:MW0818~hypothetical protein, similar to
nitrogen fixation protein NifU [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB42036.1| (AP003132) ORFID:SA0797~hypothetical protein, similar to nitrogen
fixation protein NifU [Staphylococcus aureus subsp.
aureus N315]
dbj|BAB57098.1| (AP003360) hypothetical protein [Staphylococcus aureus subsp.
aureus Mu50]
dbj|BAB94683.1| (AP004824) ORFID:MW0818~hypothetical protein, similar to nitrogen
fixation protein NifU [Staphylococcus aureus subsp.
aureus MW2]
Length = 80
Score = 58.5 bits (140), Expect = 1e-08
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 6 DEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIER 65
D + V VIE++RP+LL+DGG+ ++ V+ + + L GAC TC SS ITLK IER
Sbjct: 5 DTTMFDQVAEVIERLRPFLLRDGGDCSLIDVEDGIVKLQLHGACGTCPSSTITLKAGIER 64
Query: 66 QLKMDIHPNLEV 77
L ++ +EV
Sbjct: 65 ALHEEVPGVIEV 76
>sp|Q43885|NIFU_ANAAZ NITROGEN FIXATION PROTEIN NIFU
gb|AAA87250.1| (L34879) NifU gene product [Anabaena azollae]
Length = 300
Score = 58.2 bits (139), Expect = 2e-08
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 14 RIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIHP 73
+++ E++RP L+ DGG++E+ V + V L+GAC +CSSS TLK IE +L+ I+P
Sbjct: 234 KVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINP 293
Query: 74 NLEV 77
+L V
Sbjct: 294 SLVV 297
>ref|NP_485498.1| (NC_003272) nitrogen fixation protein [Nostoc sp. PCC 7120]
sp|P20628|NIFU_ANASP Nitrogen fixation protein nifU
pir||D34443 nitrogen fixation protein nifU - Anabaena sp
gb|AAA22007.1| (J05111) nifU [Nostoc sp. PCC 7120]
dbj|BAB73412.1| (AP003585) nitrogen fixation protein [Nostoc sp. PCC 7120]
Length = 300
Score = 58.2 bits (139), Expect = 2e-08
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 14 RIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIHP 73
+++ E++RP L+ DGG++E+ V + V L+GAC +CSSS TLK IE +L+ I+P
Sbjct: 234 KVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINP 293
Query: 74 NLEV 77
+L V
Sbjct: 294 SLVV 297
>ref|NP_391102.1| (NC_000964) similar to NifU protein homolog [Bacillus subtilis]
pir||C70024 nifU protein homolog yutI - Bacillus subtilis
emb|CAB15212.1| (Z99120) similar to NifU protein homolog [Bacillus subtilis]
Length = 111
Score = 57.8 bits (138), Expect = 3e-08
Identities = 29/73 (39%), Positives = 50/73 (67%)
Query: 5 SDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIE 64
++ ++++ V+ V++K+RP+LL+DGG+ E++ V + + L GAC +C SS ITLK IE
Sbjct: 35 TEVEMKEQVQEVLDKLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIE 94
Query: 65 RQLKMDIHPNLEV 77
R L ++ +EV
Sbjct: 95 RALLEEVPGVVEV 107
>gb|AAB88877.1| (U95179) putative NifU protein [Prunus armeniaca]
Length = 76
Score = 57.4 bits (137), Expect = 3e-08
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 13 VRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLK 68
V +V+E +RPYL+ DGG+++V+ V+ + + L+GAC +C SS T+K IER LK
Sbjct: 7 VDLVLEDVRPYLIADGGDVDVVSVEDGVVSLKLQGACGSCPSSTTTMKMGIERVLK 62
>gb|AAC33371.1| (AF001780) NifU [Cyanothece sp. PCC 8801]
Length = 294
Score = 57.0 bits (136), Expect = 4e-08
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 14 RIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIHP 73
+I+ E+I+P L KDGG++E+ V+ + V L+GAC +C+SS TLK IE +L+ + P
Sbjct: 228 QILDEEIKPALAKDGGDVELFDVEGDLVKVILQGACGSCASSTQTLKMGIEARLRERVSP 287
Query: 74 NLEVV 78
L V+
Sbjct: 288 ELTVI 292
>gb|AAD22656.1|AC007138_20 (AC007138) putative NifU-like metallocluster assembly factor
[Arabidopsis thaliana]
emb|CAB80687.1| (AL161493) putative NifU-like metallocluster assembly factor
[Arabidopsis thaliana]
Length = 174
Score = 56.6 bits (135), Expect = 6e-08
Identities = 25/56 (44%), Positives = 39/56 (69%)
Query: 13 VRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLK 68
V +V+E +RP+L+ DGGN++V+ V+ + + L+GAC +C SS T+ IER LK
Sbjct: 89 VDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLK 144
>ref|NP_567219.1| (NM_116425) putative NifU-like metallocluster assembly factor
[Arabidopsis thaliana]
gb|AAK62607.1| (AY039552) AT4g01940/T7B11_20 [Arabidopsis thaliana]
gb|AAK91380.1| (AY050363) AT4g01940/T7B11_20 [Arabidopsis thaliana]
gb|AAM26728.1| (AY102161) AT4g01940/T7B11_20 [Arabidopsis thaliana]
Length = 231
Score = 56.6 bits (135), Expect = 6e-08
Identities = 25/56 (44%), Positives = 39/56 (69%)
Query: 13 VRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLK 68
V +V+E +RP+L+ DGGN++V+ V+ + + L+GAC +C SS T+ IER LK
Sbjct: 90 VDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLK 145
>ref|NP_485352.1| (NC_003272) NifU like protein [Nostoc sp. PCC 7120]
dbj|BAB73266.1| (AP003585) NifU like protein~ORF_ID:asr1309 [Nostoc sp. PCC 7120]
Length = 76
Score = 56.2 bits (134), Expect = 7e-08
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 13 VRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIH 72
V V++++RPYL+ DGGN+E++ + + + L+GAC +C SS +TL+ IER+L+ I
Sbjct: 8 VETVLDEMRPYLISDGGNVELVELDGPIVKLRLQGACGSCPSSTMTLRMGIERRLREMIP 67
Query: 73 PNLEV 77
EV
Sbjct: 68 EIAEV 72
>sp|P33179|NIFU_ANASL NIFU PROTEIN
pir||I39609 nifU protein - Anabaena sp. (fragment)
gb|AAA22013.1| (L04499) nifU [Anabaena sp. L-31]
Length = 112
Score = 56.2 bits (134), Expect = 7e-08
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 14 RIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIHP 73
+++ E++RP L+ DGG++E+ V + V L+GAC +C SS TLK IE +L+ I+P
Sbjct: 46 KVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRINP 105
Query: 74 NLEV 77
+L V
Sbjct: 106 SLVV 109
>emb|CAA49299.1| (X69584) YKL253 [Saccharomyces cerevisiae]
Length = 230
Score = 56.2 bits (134), Expect = 7e-08
Identities = 31/76 (40%), Positives = 51/76 (66%), Gaps = 3/76 (3%)
Query: 6 DEDLQKPVRIVIE-KIRPYLLKDGGNIEVLG--VKSMKIYVALEGACKTCSSSKITLKNV 62
DE++ + + +I+ +IRP +L+DGG+I+ G K+ +Y+ L+GAC +CSSS++TLK
Sbjct: 150 DEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSSSEVTLKYG 209
Query: 63 IERQLKMDIHPNLEVV 78
IE LK + EV+
Sbjct: 210 IESMLKHYVDEVKEVI 225
>ref|NP_568715.1| (NM_124372) Expressed protein [Arabidopsis thaliana]
gb|AAK44168.1|AF370353_1 (AF370353) unknown protein [Arabidopsis thaliana]
gb|AAL16167.1|AF428399_1 (AF428399) AT5g49940/K9P8_8 [Arabidopsis thaliana]
gb|AAL34158.1| (AY062984) unknown protein [Arabidopsis thaliana]
Length = 235
Score = 55.5 bits (132), Expect = 1e-07
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 10 QKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKM 69
++ V V+++IRPYL+ DGGN+ + + + V L+GAC +C SS +T+K IER+L
Sbjct: 87 EENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLME 146
Query: 70 DIHPNLEVVCLE 81
I E+V +E
Sbjct: 147 KIP---EIVAVE 155
>dbj|BAA97015.1| (AB024032) gene_id:K9P8.8~pir||T09896~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 684
Score = 55.5 bits (132), Expect = 1e-07
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 10 QKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKM 69
++ V V+++IRPYL+ DGGN+ + + + V L+GAC +C SS +T+K IER+L
Sbjct: 87 EENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLME 146
Query: 70 DIHPNLEVVCLE 81
I E+V +E
Sbjct: 147 KIP---EIVAVE 155
>gb|AAA93019.1| (U49859) NifU2 [Anabaena variabilis]
Length = 309
Score = 55.5 bits (132), Expect = 1e-07
Identities = 25/68 (36%), Positives = 44/68 (63%)
Query: 14 RIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIHP 73
+++ E++RP L+ DGG+IE+ V+ + V L+GAC +C SS TLK +E +L+ +
Sbjct: 233 KVLDEEVRPLLIADGGDIELYDVQGDNVQVVLQGACGSCPSSTATLKVAVEAKLQERVSQ 292
Query: 74 NLEVVCLE 81
+L V ++
Sbjct: 293 SLRVEAVD 300
>ref|NP_221029.1| (NC_000963) unknown [Rickettsia prowazekii]
pir||G71672 hypothetical protein RP667 - Rickettsia prowazekii
emb|CAA15105.1| (AJ235272) unknown [Rickettsia prowazekii]
Length = 190
Score = 54.3 bits (129), Expect = 3e-07
Identities = 32/75 (42%), Positives = 46/75 (60%), Gaps = 1/75 (1%)
Query: 8 DLQKPVRIVIE-KIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQ 66
+++K + IE ++RP++ +DGG+I G +S + +AL GAC C SS ITLKN IE
Sbjct: 112 EIEKQIIETIETRVRPFVTQDGGDIIYKGFESGVVKLALRGACLGCPSSTITLKNGIESM 171
Query: 67 LKMDIHPNLEVVCLE 81
LK I EV +E
Sbjct: 172 LKHFIPEVQEVKAVE 186
>pir||T40430 conserved hypothetical NifU-like protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAB52604.1| (AL109822) conserved hypothetical NifU-like protein
[Schizosaccharomyces pombe]
Length = 260
Score = 53.9 bits (128), Expect = 4e-07
Identities = 33/77 (42%), Positives = 49/77 (62%), Gaps = 4/77 (5%)
Query: 5 SDEDLQKPVRIVIE-KIRPYLLKDGGNIEVLGV--KSMKIYVALEGACKTCSSSKITLKN 61
SD + ++ +IE IRP + +DGG++E G K+ + + L GAC+TCSSS +TLKN
Sbjct: 153 SDSQIVAMIKELIETSIRPSIQEDGGDVEFRGFDEKTGTVSLKLRGACRTCSSSAVTLKN 212
Query: 62 VIERQLKMDIHPNLEVV 78
I++ LK I P +E V
Sbjct: 213 GIQQMLKHYI-PEVENV 228
>gb|AAF82636.1|AF167538_3 (AF167538) NifU [Trichodesmium sp. IMS101]
Length = 291
Score = 53.5 bits (127), Expect = 5e-07
Identities = 24/64 (37%), Positives = 42/64 (65%)
Query: 14 RIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIHP 73
+++ +++RP L +DGG++E+ V ++ V L+GAC +CS+ +TLK IE LK +
Sbjct: 225 QVLQQEVRPVLAEDGGDVELFDVDGDRVLVKLKGACGSCSNVLVTLKGAIEATLKERVSE 284
Query: 74 NLEV 77
+L V
Sbjct: 285 SLVV 288
>gb|AAD03815.1| (AF055034) NifU [Trichodesmium sp. IMS101]
Length = 179
Score = 53.5 bits (127), Expect = 5e-07
Identities = 24/64 (37%), Positives = 42/64 (65%)
Query: 14 RIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIHP 73
+++ +++RP L +DGG++E+ V ++ V L+GAC +CS+ +TLK IE LK +
Sbjct: 113 QVLQQEVRPVLAEDGGDVELFDVDGDRVLVKLKGACGSCSNVLVTLKGAIEATLKERVSE 172
Query: 74 NLEV 77
+L V
Sbjct: 173 SLVV 176
>ref|NP_360655.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL03556.1| (AE008653) unknown [Rickettsia conorii]
Length = 190
Score = 52.8 bits (125), Expect = 8e-07
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 13 VRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIH 72
V I+ ++RP + +DGG+I G ++ + +AL GAC C SS ITLKN IE LK +
Sbjct: 118 VEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLKNGIESMLKHFVP 177
Query: 73 PNLEVVCLENAKE 85
EV +E E
Sbjct: 178 EVQEVEAVEEGFE 190
>emb|CAD21196.1| (AL669999) conserved hypothetical protein [Neurospora crassa]
Length = 326
Score = 51.6 bits (122), Expect = 2e-06
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 5 SDEDLQKPVRIVIE-KIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVI 63
+D ++ ++ ++E +IRP + +DGG+IE G + + + L GAC+TC SS +TLKN I
Sbjct: 209 NDSEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGIVKLKLRGACRTCDSSTVTLKNGI 268
Query: 64 ERQL 67
E L
Sbjct: 269 EGML 272
>ref|NP_595452.1| (NC_003423) conserved hypothetical protein [Schizosaccharomyces
pombe]
pir||T39647 conserved hypothetical protein SPBC1709.19c - fission yeast
(Schizosaccharomyces pombe) (fragment)
emb|CAA21258.1| (AL031852) conserved hypothetical protein [Schizosaccharomyces
pombe]
Length = 96
Score = 51.2 bits (121), Expect = 2e-06
Identities = 29/61 (47%), Positives = 41/61 (66%), Gaps = 3/61 (4%)
Query: 20 IRPYLLKDGGNIEVLGV--KSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIHPNLEV 77
IRP + +DGG++E G K+ + + L GAC+TCSSS +TLKN I++ LK I P +E
Sbjct: 5 IRPSIQEDGGDVEFRGFDEKTGTVSLKLRGACRTCSSSAVTLKNGIQQMLKHYI-PEVEN 63
Query: 78 V 78
V
Sbjct: 64 V 64
>gb|AAM63593.1| (AY086527) nitrogen fixation like protein [Arabidopsis thaliana]
Length = 236
Score = 50.8 bits (120), Expect = 3e-06
Identities = 22/59 (37%), Positives = 40/59 (67%)
Query: 10 QKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLK 68
++ V V++++RP L+ DGGN+ + + + + + L+GAC +C SS +TLK IE +L+
Sbjct: 86 EENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLR 144
>ref|NP_567735.1| (NM_118724) nitrogen fixation like protein [Arabidopsis thaliana]
Length = 236
Score = 50.8 bits (120), Expect = 3e-06
Identities = 22/59 (37%), Positives = 40/59 (67%)
Query: 10 QKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLK 68
++ V V++++RP L+ DGGN+ + + + + + L+GAC +C SS +TLK IE +L+
Sbjct: 86 EENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLR 144
>pir||T04246 hypothetical protein F20B18.20 - Arabidopsis thaliana
emb|CAB39656.1| (AL049483) nitrogen fixation like protein [Arabidopsis thaliana]
emb|CAB79446.1| (AL161564) nitrogen fixation like protein [Arabidopsis thaliana]
Length = 224
Score = 50.8 bits (120), Expect = 3e-06
Identities = 22/59 (37%), Positives = 40/59 (67%)
Query: 10 QKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLK 68
++ V V++++RP L+ DGGN+ + + + + + L+GAC +C SS +TLK IE +L+
Sbjct: 74 EENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLR 132
>gb|AAD17270.1| (AF119361) NifV [Frankia sp. EuIK1]
Length = 206
Score = 50.1 bits (118), Expect = 5e-06
Identities = 26/71 (36%), Positives = 45/71 (62%), Gaps = 7/71 (9%)
Query: 5 SDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKS-------MKIYVALEGACKTCSSSKI 57
+DE L+ V VI +IRP+L DGG+++++ V + ++++ L GAC CSS+
Sbjct: 123 ADERLRGQVEDVIAEIRPFLQGDGGDVQLVTVLAGNGQPGTAEVHIRLVGACNGCSSASA 182
Query: 58 TLKNVIERQLK 68
T+ VIE+++K
Sbjct: 183 TVTAVIEKRIK 193
>gb|AAL49077.1| (AY071455) RE53788p [Drosophila melanogaster]
Length = 134
Score = 49.7 bits (117), Expect = 7e-06
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 1 MIEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK 60
++E DE + ++ +IRP + +DGG+I +G + + + ++G+C +C SS +TLK
Sbjct: 22 ILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLK 81
Query: 61 NVIERQLKMDIHPNLEVV 78
N ++ L+ I P +E V
Sbjct: 82 NGVQNMLQFYI-PEVESV 98
>gb|AAF16622.1| (AF182444) TO42 [Drosophila melanogaster]
gb|AAF28338.1|AF213379_1 (AF213379) r10h10-like protein TO42 [Drosophila melanogaster]
Length = 286
Score = 49.7 bits (117), Expect = 7e-06
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 1 MIEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK 60
++E DE + ++ +IRP + +DGG+I +G + + + ++G+C +C SS +TLK
Sbjct: 174 ILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLK 233
Query: 61 NVIERQLKMDIHPNLEVV 78
N ++ L+ I P +E V
Sbjct: 234 NGVQNMLQFYI-PEVESV 250
>gb|AAL49319.1| (AY071697) RH16335p [Drosophila melanogaster]
Length = 283
Score = 49.7 bits (117), Expect = 7e-06
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 1 MIEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK 60
++E DE + ++ +IRP + +DGG+I +G + + + ++G+C +C SS +TLK
Sbjct: 171 ILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLK 230
Query: 61 NVIERQLKMDIHPNLEVV 78
N ++ L+ I P +E V
Sbjct: 231 NGVQNMLQFYI-PEVESV 247
>gb|AAG22462.1| (AE003122) CG18856 gene product [Drosophila melanogaster]
Length = 178
Score = 49.7 bits (117), Expect = 7e-06
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 1 MIEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK 60
++E DE + ++ +IRP + +DGG+I +G + + + ++G+C +C SS +TLK
Sbjct: 22 ILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLK 81
Query: 61 NVIERQLKMDIHPNLEVV 78
N ++ L+ I P +E V
Sbjct: 82 NGVQNMLQFYI-PEVESV 98
>gb|EAA06366.1| (AAAB01008846) agCP13132 [Anopheles gambiae str. PEST]
Length = 291
Score = 49.7 bits (117), Expect = 7e-06
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 3 EFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNV 62
E DE +Q ++ +IRP + +DGG+I +G + + ++G+C +C SS +TLKN
Sbjct: 182 EDDDETVQMIKELLDTRIRPTVQEDGGDIIFMGFDDGVVKLKMQGSCSSCPSSIVTLKNG 241
Query: 63 IERQLKMDIHPNLEVVCLEN-AKEFDKL 89
++ L+ I EVV +E E DK+
Sbjct: 242 VQNMLQFYIP---EVVSVEQVTDEADKV 266
>ref|NP_069466.1| (NC_000917) nifU protein (nifU-3) [Archaeoglobus fulgidus]
pir||H69328 nifU protein (nifU-3) homolog - Archaeoglobus fulgidus
gb|AAB90617.1| (AE001061) nifU protein (nifU-3) [Archaeoglobus fulgidus]
Length = 77
Score = 49.3 bits (116), Expect = 9e-06
Identities = 32/73 (43%), Positives = 44/73 (59%), Gaps = 3/73 (4%)
Query: 9 LQKPVRIVIEK-IRPYLLKDGGNIEVLGVK--SMKIYVALEGACKTCSSSKITLKNVIER 65
L++ V V+EK IRP L++DGGNI V+ V S + V L GAC C S ITL + +ER
Sbjct: 3 LREKVEEVVEKDIRPALMRDGGNIAVVDVDEGSGTVKVQLLGACGGCPMSMITLTSFVER 62
Query: 66 QLKMDIHPNLEVV 78
L+ + +VV
Sbjct: 63 YLRAKVPEVKKVV 75
>ref|NP_501917.1| (NM_069516) Yeast hypothetical protein YKE0 like [Caenorhabditis
elegans]
pir||T24151 hypothetical protein R10H10.1 - Caenorhabditis elegans
emb|CAA94609.1| (Z70686) Similarity to Yeast hypothetical protein YKE0
(SW:YKE0_YEAST), contains similarity to Pfam domain:
PF01106 (NifU-like domain), Score=140.0,
E-value=1.4e-38, N=1~cDNA EST yk254g6.3 comes from this
gene~cDNA EST yk254g6.5 comes from this gene [C>
Length = 222
Score = 48.9 bits (115), Expect = 1e-05
Identities = 26/77 (33%), Positives = 42/77 (53%)
Query: 2 IEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKN 61
+E DE + I+ +IRP + +DGG+I +G + + ++G+C C SS +TLKN
Sbjct: 121 VEEDDEVVMMIKEILETRIRPMVQEDGGDITYVGFDDGVVKLKMQGSCTGCPSSGVTLKN 180
Query: 62 VIERQLKMDIHPNLEVV 78
IE L + EV+
Sbjct: 181 GIENMLTFYVPEVKEVI 197
>gb|AAF72894.1|AF228511_2 (AF228511) NU1 [Trypanosoma cruzi]
Length = 261
Score = 48.9 bits (115), Expect = 1e-05
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 3 EFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMK--IYVALEGACKTCSSSKITLK 60
E E LQ ++ E++RP + +DGG++++L + +A+ GAC+TC SS TLK
Sbjct: 127 EEDSEVLQCIKELLREQVRPMVQRDGGDVKLLNFNEETGVVSLAMLGACRTCPSSSNTLK 186
Query: 61 NVIERQLKMDIHPNLEVV 78
+ IER +K + EVV
Sbjct: 187 DGIERVMKHFLPEVTEVV 204
>ref|NP_662665.1| (NC_002932) NifU protein, putative [Chlorobium tepidum TLS]
gb|AAM73007.1| (AE012931) NifU protein, putative [Chlorobium tepidum TLS]
Length = 83
Score = 48.5 bits (114), Expect = 2e-05
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 7 EDLQKPVRIVIEKIRPYLLKDGGNIEVLGV-KSMKIYVALEGACKTCSSSKITLKNVIER 65
+ L V +E +RPYL DGG+ +++G+ K M + V L GAC +C S +TL+ +E+
Sbjct: 9 DPLYDKVISALETVRPYLQVDGGDCQLVGITKDMVVDVKLLGACGSCPMSTLTLRAGVEQ 68
Query: 66 QLKMDIHPNLEVVCLEN 82
+K N E+V +E+
Sbjct: 69 AIK---KANPEIVRVES 82
>gb|AAA22184.1| (L34354) nitrogen fixation protein [Azospirillum brasilense]
Length = 307
Score = 47.0 bits (110), Expect = 4e-05
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 13 VRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNV 62
+ IE++RP + +DGG++E++ + IYV L GAC CS S ++ V
Sbjct: 236 IMFAIEELRPQIQRDGGDVELVDIDGKDIYVRLTGACSGCSQSAASMMGV 285
>ref|NP_465920.1| (NC_003210) similar to NifU protein [Listeria monocytogenes
EGD-e]
emb|CAD00475.1| (AL591983) similar to NifU protein [Listeria monocytogenes]
Length = 78
Score = 46.6 bits (109), Expect = 6e-05
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 17 IEKIRPYLLKDGGNIEVLGVKSMKIY-VALEGACKTCSSSKITLKNVIERQLKMDIHPNL 75
++K RP+L++DGG+ E++ V I + L GAC+TC SS +TLK IE L I
Sbjct: 13 LKKFRPFLVRDGGDYELIEVTQDGIVKIKLLGACETCPSSDMTLKMGIELTLAEKIIGFK 72
Query: 76 EVV 78
EVV
Sbjct: 73 EVV 75
>gb|AAM50738.1| (AY118878) GM32035p [Drosophila melanogaster]
Length = 104
Score = 46.2 bits (108), Expect = 8e-05
Identities = 22/60 (36%), Positives = 39/60 (64%), Gaps = 1/60 (1%)
Query: 19 KIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIHPNLEVV 78
+IRP + +DGG+I +G + + + ++G+C +C SS +TLKN ++ L+ I P +E V
Sbjct: 10 RIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYI-PEVESV 68
>ref|NP_471826.1| (NC_003212) similar to NifU protein [Listeria innocua]
emb|CAC97723.1| (AL596172) similar to NifU protein [Listeria innocua]
Length = 78
Score = 45.8 bits (107), Expect = 1e-04
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 17 IEKIRPYLLKDGGNIEVLGVKSMKIY-VALEGACKTCSSSKITLKNVIERQLKMDIHPNL 75
++K RP+L++DGG+ E++ V I + L GAC+TC SS +TLK IE L I
Sbjct: 13 LKKFRPFLVRDGGDYELVEVTPDGIVKIKLLGACETCPSSDMTLKMGIELTLAEKIIGFK 72
Query: 76 EVV 78
EVV
Sbjct: 73 EVV 75
>ref|NP_056515.1| (NM_015700) HIRA interacting protein 5; HIRIP5 protein;
HIRA-interacting protein 5; HIRA-interacting protein 5
[Homo sapiens]
emb|CAB53015.1| (AJ132584) HIRA-interacting protein HIRIP5 [Homo sapiens]
Length = 196
Score = 45.8 bits (107), Expect = 1e-04
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 3 EFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNV 62
E DE + ++ +IRP + +DGG++ G + + + L+G+C +C SS ITLKN
Sbjct: 106 EEDDEVVAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNG 165
Query: 63 IERQLKMDIHPNLEVV 78
I+ L+ I P +E V
Sbjct: 166 IQNMLQFYI-PEVEGV 180
>sp|P40432|YVN2_AZOVI Hypothetical 10.3 kDa protein in vnfA 5'region
pir||C44514 hypothetical protein 2 (vnfA 5' region) - Azotobacter vinelandii
gb|AAA82515.1| (M26752) unknown protein [Azotobacter vinelandii]
Length = 96
Score = 45.8 bits (107), Expect = 1e-04
Identities = 22/66 (33%), Positives = 42/66 (63%)
Query: 13 VRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIH 72
VR +E++RP + +DGG++E++ V+ + + L+GAC C+ S TL V +K+ +
Sbjct: 28 VRETVERLRPGVQRDGGDLELVAVQDNIVRLRLKGACVGCAMSAQTLGGVRRELVKVLDN 87
Query: 73 PNLEVV 78
P++ V+
Sbjct: 88 PSVRVL 93
>gb|AAD27742.1|AF132967_1 (AF132967) CGI-33 protein [Homo sapiens]
Length = 231
Score = 45.8 bits (107), Expect = 1e-04
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 3 EFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNV 62
E DE + ++ +IRP + +DGG++ G + + + L+G+C +C SS ITLKN
Sbjct: 141 EEDDEVVAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNG 200
Query: 63 IERQLKMDIHPNLEVV 78
I+ L+ I P +E V
Sbjct: 201 IQNMLQFYI-PEVEGV 215
>ref|NP_384507.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC41838.1| (AL591783) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 188
Score = 45.4 bits (106), Expect = 1e-04
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 6 DEDLQKPVRIVIE-KIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIE 64
DE + ++ ++E ++RP + +DGG+I G K +++ ++GAC C SS TL++ ++
Sbjct: 113 DEAIVATIKELLETRVRPAVAQDGGDITFRGFKDGTVFLNMKGACSGCPSSTATLRHGVQ 172
Query: 65 RQLKMDIHPNLEVV 78
L+ + P +E V
Sbjct: 173 NLLRHFV-PEVEAV 185
>ref|NP_540725.1| (NC_003317) NIFU PROTEIN [Brucella melitensis]
gb|AAL52989.1| (AE009614) NIFU PROTEIN [Brucella melitensis]
Length = 190
Score = 45.4 bits (106), Expect = 1e-04
Identities = 20/65 (30%), Positives = 43/65 (65%), Gaps = 1/65 (1%)
Query: 5 SDEDLQKPVRIVIE-KIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVI 63
+D ++ + ++ +IE ++RP + +DGG+I G ++ +++ ++GAC C SS TLK+ +
Sbjct: 114 ADTEIVETIKELIETRVRPAVAQDGGDITFRGFENGTVFLHMKGACSGCPSSTATLKHGV 173
Query: 64 ERQLK 68
+ L+
Sbjct: 174 QNLLR 178
>sp|P23121|NIFU_AZOCH NITROGEN FIXATION PROTEIN NIFU
pir||A43706 nitrogen fixation protein nifU homolog - Azotobacter chroococcum
gb|AAA22159.1| (M60090) nifU [Azotobacter chroococcum]
Length = 309
Score = 45.1 bits (105), Expect = 2e-04
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 13 VRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLK 68
+ V+ IRP L +D G++E++ V IYV L GAC C + +TL + +R ++
Sbjct: 234 IETVLAAIRPTLQRDKGDVELIDVDGKNIYVKLTGACTGCQMASMTLGGIQQRLIE 289
>ref|NP_445545.1| (NC_002179) nifU protein, putative [Chlamydophila pneumoniae AR39]
pir||F81512 nifU protein, probable CP1008 [imported] - Chlamydophila pneumoniae
(strain AR39)
gb|AAF38786.1| (AE002258) nifU protein, putative [Chlamydophila pneumoniae AR39]
Length = 266
Score = 45.1 bits (105), Expect = 2e-04
Identities = 22/62 (35%), Positives = 35/62 (55%)
Query: 16 VIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIHPNL 75
+ EKI PY+ DGG + V +++ + +A G C C SS + N I + L+ I+P L
Sbjct: 193 IAEKIGPYIAMDGGEVTVESLENFIVTIAYSGNCSGCPSSLGSTLNSIGQLLRAYIYPEL 252
Query: 76 EV 77
+V
Sbjct: 253 QV 254
>ref|NP_225056.1| (NC_000922) NifU-related protein [Chlamydophila pneumoniae CWL029]
ref|NP_300918.1| (NC_002491) NifU-related protein [Chlamydophila pneumoniae J138]
pir||E72025 nifu-related protein - Chlamydophila pneumoniae (strain CWL029)
gb|AAD18999.1| (AE001667) NifU-related protein [Chlamydophila pneumoniae CWL029]
dbj|BAA99069.1| (AP002548) NifU-related protein [Chlamydophila pneumoniae J138]
Length = 266
Score = 45.1 bits (105), Expect = 2e-04
Identities = 22/62 (35%), Positives = 35/62 (55%)
Query: 16 VIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIHPNL 75
+ EKI PY+ DGG + V +++ + +A G C C SS + N I + L+ I+P L
Sbjct: 193 IAEKIGPYIAMDGGEVTVESLENFIVTIAYSGNCSGCPSSLGSTLNSIGQLLRAYIYPEL 252
Query: 76 EV 77
+V
Sbjct: 253 QV 254
>ref|NP_106002.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51788.1| (AP003006) hypothetical protein [Mesorhizobium loti]
Length = 189
Score = 45.1 bits (105), Expect = 2e-04
Identities = 21/65 (32%), Positives = 43/65 (65%), Gaps = 1/65 (1%)
Query: 5 SDEDLQKPVRIVIE-KIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVI 63
+DE+L ++ +++ ++RP + +DGG+I G ++ +++ ++GAC C SS TLK+ I
Sbjct: 112 ADEELVITIKELLDTRVRPAVAQDGGDITFRGFENGTVFLHMKGACAGCPSSTATLKHGI 171
Query: 64 ERQLK 68
+ L+
Sbjct: 172 QNLLR 176
>ref|NP_623332.1| (NC_003869) Thioredoxin-like proteins and domains
[Thermoanaerobacter tengcongensis]
gb|AAM24936.1| (AE013127) Thioredoxin-like proteins and domains
[Thermoanaerobacter tengcongensis]
Length = 73
Score = 44.7 bits (104), Expect = 2e-04
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 9 LQKPVRIVIEKIRPYLLKDGGNIEVLGV-KSMKIYVALEGACKTCSSSKITLKNVIERQL 67
+++ V ++ I+P L DGG++E++ V + + V L GAC C + +TLK IER +
Sbjct: 1 MRERVEEILNLIKPSLQADGGDVELVDVTEDGVVKVKLTGACGGCPFATLTLKEGIERAI 60
Query: 68 KMDIHPNLEVVCL 80
K +I EV+ +
Sbjct: 61 KEEIPEVKEVIAV 73
>sp|Q07178|NIU1_RHOCA Nitrogen fixation protein nifU 1
pir||S34815 nifU1 protein - Rhodobacter capsulatus
emb|CAA48486.1| (X68444) nifU (copyI) [Rhodobacter capsulatus]
Length = 135
Score = 44.7 bits (104), Expect = 2e-04
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 5 SDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIE 64
+D+++ + +R +I+++RP +DGG+IE++ V+ K+ V L GAC C + TL V +
Sbjct: 59 ADDEVTR-IRALIDEMRPTFRRDGGDIELVRVEGAKVIVHLSGACAGCMLAGQTLYGVQK 117
Query: 65 R 65
R
Sbjct: 118 R 118
>sp|P05340|NIFU_AZOVI Nitrogen fixation protein nifU
pir||S29756 nitrogen fixation protein nifU homolog - Azotobacter vinelandii
gb|AAA64725.1| (M20568) nifU protein [Azotobacter vinelandii]
Length = 312
Score = 44.7 bits (104), Expect = 2e-04
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 13 VRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLK 68
+ V+ IRP L +D G++E++ V +YV L GAC C + +TL + +R ++
Sbjct: 236 IETVLAAIRPTLQRDKGDVELIDVDGKNVYVKLTGACTGCQMASMTLGGIQQRLIE 291
>gb|AAA22167.1| (M17349) nifU protein [Azotobacter vinelandii]
Length = 312
Score = 44.7 bits (104), Expect = 2e-04
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 13 VRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLK 68
+ V+ IRP L +D G++E++ V +YV L GAC C + +TL + +R ++
Sbjct: 236 IETVLAAIRPTLQRDKGDVELIDVDGKNVYVKLTGACTGCQMASMTLGGIQQRLIE 291
>sp|Q43909|NIFU_AZOBR NITROGEN FIXATION PROTEIN NIFU
gb|AAC46176.1| (U26427) nifU [Azospirillum brasilense]
Length = 310
Score = 44.7 bits (104), Expect = 2e-04
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 13 VRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNV 62
+ IE RP + +DGG++E++ + IYV L GAC CS S T+ V
Sbjct: 237 IMFAIEDWRPQIQRDGGDVELVDIDGKDIYVRLTGACSGCSQSAGTMMGV 286
>ref|NP_353383.1| (NC_003062) AGR_C_616p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_531057.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK86168.1| (AE007973) AGR_C_616p [Agrobacterium tumefaciens str. C58 (Cereon)]
gb|AAL41373.1| (AE009006) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 187
Score = 44.3 bits (103), Expect = 3e-04
Identities = 20/67 (29%), Positives = 41/67 (60%), Gaps = 1/67 (1%)
Query: 3 EFSDEDLQKPVRIVIE-KIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKN 61
E DE + ++ +++ ++RP + +DGG+I G + +++ ++GAC C SS TLK+
Sbjct: 109 EEGDETIVATIKELLDTRVRPAVAQDGGDITFRGFRDGTVFLNMKGACSGCPSSTATLKH 168
Query: 62 VIERQLK 68
++ L+
Sbjct: 169 GVQNLLR 175
>ref|NP_281434.1| (NC_002163) nifU protein homolog [Campylobacter jejuni]
pir||G81441 nifU protein homolog Cj0239c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72708.1| (AL139074) nifU protein homolog [Campylobacter jejuni]
Length = 323
Score = 44.3 bits (103), Expect = 3e-04
Identities = 25/74 (33%), Positives = 42/74 (55%), Gaps = 6/74 (8%)
Query: 11 KPVRIVIE-KIRPYLLKDGGNIEVLGVK-----SMKIYVALEGACKTCSSSKITLKNVIE 64
K V V++ +IRP L DGG++EV+ ++ ++ +Y+ GAC CSS IE
Sbjct: 248 KAVESVLDAEIRPMLHNDGGDLEVIDIQKAEGAAIDVYIRYLGACSGCSSGSGATLYAIE 307
Query: 65 RQLKMDIHPNLEVV 78
L+ ++ PN+ V+
Sbjct: 308 TILQEELSPNIRVM 321
>sp|Q01180|NIFU_RHOSH NITROGEN FIXATION PROTEIN NIFU
pir||B41880 nitrogenase stabilizer NifU - Rhodobacter sphaeroides
gb|AAA26136.1| (M86823) nifU [Rhodobacter sphaeroides]
Length = 246
Score = 43.9 bits (102), Expect = 4e-04
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 16 VIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIER 65
VIE +RP L DGG++ ++ V+ K+ V L GAC C + +TL + +R
Sbjct: 171 VIESVRPRLRADGGDVTLVAVEGSKVRVHLTGACSGCQLAALTLGGLQKR 220
>ref|NP_064429.1| (NM_020045) histone cell cycle regulation defective interacting
protein 5; HIRA-interacting protein 5 [Mus musculus]
ref|XP_132687.1| (XM_132687) histone cell cycle regulation defective interacting
protein 5 [Mus musculus]
emb|CAB57314.1| (AJ132616) HIRA-interacting protein (HIRIP5) [Mus musculus]
gb|AAH18355.1|AAH18355 (BC018355) histone cell cycle regulation defective interacting
protein 5 [Mus musculus]
Length = 199
Score = 43.5 bits (101), Expect = 5e-04
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 3 EFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNV 62
E DE + ++ +IRP + +DGG++ G + + + L+G+C +C SS ITLK+
Sbjct: 108 EEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSG 167
Query: 63 IERQLKMDIHPNLEVV 78
I+ L+ I P +E V
Sbjct: 168 IQNMLQFYI-PEVEGV 182
>dbj|BAB22965.1| (AK003730) data source:MGD, source key:MGI:1913290,
evidence:ISS~histone cell cycle regulation defective
interacting protein 5~putative [Mus musculus]
Length = 255
Score = 43.5 bits (101), Expect = 5e-04
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 3 EFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNV 62
E DE + ++ +IRP + +DGG++ G + + + L+G+C +C SS ITLK+
Sbjct: 164 EEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSG 223
Query: 63 IERQLKMDIHPNLEVV 78
I+ L+ I P +E V
Sbjct: 224 IQNMLQFYI-PEVEGV 238
>gb|AAF76865.1|AF232919_4 (AF232919) NifU-like protein [Sinorhizobium meliloti]
Length = 63
Score = 43.5 bits (101), Expect = 5e-04
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 19 KIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIHPNLEVV 78
++RP + +DGG+I G K +++ ++GAC C SS TL++ ++ L+ + P +E V
Sbjct: 2 RVRPAVAQDGGDITFRGFKDGTVFLNMKGACSGCPSSTATLRHGVQNLLRHFV-PEVEAV 60
>gb|AAG27073.1|AF105225_9 (AF030414) NifU [Gluconacetobacter diazotrophicus]
Length = 309
Score = 43.5 bits (101), Expect = 5e-04
Identities = 17/52 (32%), Positives = 33/52 (62%)
Query: 11 KPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNV 62
+ + V+E++RP L DGG+ E++ V+ ++ V L GAC C + +T++ +
Sbjct: 237 RAIEEVLEELRPALRNDGGDCELVDVEDNRVMVRLTGACVNCQLAAVTVQGI 288
>ref|NP_566673.1| (NM_112989) expressed protein [Arabidopsis thaliana]
dbj|BAB01907.1| (AP001304) gb|AAD30650.1~gene_id:MFD22.10~similar to unknown
protein [Arabidopsis thaliana]
gb|AAK48964.1|AF370537_1 (AF370537) Unknown protein [Arabidopsis thaliana]
gb|AAL66924.1| (AY072509) unknown protein [Arabidopsis thaliana]
Length = 283
Score = 43.1 bits (100), Expect = 6e-04
Identities = 33/87 (37%), Positives = 49/87 (55%), Gaps = 11/87 (12%)
Query: 7 EDLQKPVRIVIE----KIRPYLLKDGGNIEVLGV--KSMKIYVALEGACKTCSSSKITLK 60
ED + V ++ E +IRP + DGG+IE G +S + + ++GAC C SS +TLK
Sbjct: 187 EDDSETVAMIKELLETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLK 246
Query: 61 NVIERQLKMDIHPNLEVVCLENAKEFD 87
+ IE L +H EV +E +EFD
Sbjct: 247 SGIENML---MHYVSEVKGVE--QEFD 268
>ref|NP_175550.1| (NM_104017) unknown protein [Arabidopsis thaliana]
gb|AAD30650.1|AC006085_23 (AC006085) Similar to human CGI-33 protein [Arabidopsis thaliana]
Length = 304
Score = 42.4 bits (98), Expect = 0.001
Identities = 32/87 (36%), Positives = 48/87 (54%), Gaps = 11/87 (12%)
Query: 7 EDLQKPVRIVIE----KIRPYLLKDGGNIEVLGVKSMK--IYVALEGACKTCSSSKITLK 60
ED + V ++ E +IRP + DGG+IE G + + + ++GAC C SS +TLK
Sbjct: 211 EDDSETVAMIKELLETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLK 270
Query: 61 NVIERQLKMDIHPNLEVVCLENAKEFD 87
+ IE L +H EV +E +EFD
Sbjct: 271 SGIENML---MHYVSEVKGVE--QEFD 292
>gb|AAG52627.1|AC024261_14 (AC024261) unknown protein; 90320-88994 [Arabidopsis thaliana]
Length = 275
Score = 42.4 bits (98), Expect = 0.001
Identities = 32/87 (36%), Positives = 48/87 (54%), Gaps = 11/87 (12%)
Query: 7 EDLQKPVRIVIE----KIRPYLLKDGGNIEVLGVKSMK--IYVALEGACKTCSSSKITLK 60
ED + V ++ E +IRP + DGG+IE G + + + ++GAC C SS +TLK
Sbjct: 182 EDDSETVAMIKELLETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLK 241
Query: 61 NVIERQLKMDIHPNLEVVCLENAKEFD 87
+ IE L +H EV +E +EFD
Sbjct: 242 SGIENML---MHYVSEVKGVE--QEFD 263
>gb|AAK70910.1|AC087551_9 (AC087551) hypothetical protein [Oryza sativa]
Length = 272
Score = 42.0 bits (97), Expect = 0.001
Identities = 24/69 (34%), Positives = 41/69 (58%), Gaps = 3/69 (4%)
Query: 2 IEFSDEDLQKPVRIVIE-KIRPYLLKDGGNIEVLGV--KSMKIYVALEGACKTCSSSKIT 58
I D ++ ++ ++E +IRP + DGG+IE G ++ + + ++GAC C SS +T
Sbjct: 177 IHEDDSEIVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVT 236
Query: 59 LKNVIERQL 67
LK+ IE L
Sbjct: 237 LKSGIENML 245
>ref|NP_207019.1| (NC_000915) nifU-like protein [Helicobacter pylori 26695]
pir||E64547 nitrogen fixation protein nifU homolog - Helicobacter pylori
(strain 26695)
gb|AAD07289.1| (AE000542) nifU-like protein [Helicobacter pylori 26695]
Length = 326
Score = 42.0 bits (97), Expect = 0.001
Identities = 21/69 (30%), Positives = 38/69 (54%), Gaps = 4/69 (5%)
Query: 14 RIVIEKIRPYLLKDGGNIEVLGVKS----MKIYVALEGACKTCSSSKITLKNVIERQLKM 69
+++ E IRP L+ DGG++E+L +K + +Y+ GAC C S+ IE L+
Sbjct: 256 KVIDENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACDGCMSATTGTLFAIENALQE 315
Query: 70 DIHPNLEVV 78
+ ++ V+
Sbjct: 316 LLDRSIRVL 324
>ref|NP_220239.1| (NC_000117) NifU-related protein [Chlamydia trachomatis]
pir||C71478 probable nifu-related protein - Chlamydia trachomatis (serotype D,
strain UW3/Cx)
gb|AAC68315.1| (AE001343) NifU-related protein [Chlamydia trachomatis]
Length = 260
Score = 41.6 bits (96), Expect = 0.002
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 6 DEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIER 65
DE L ++ EKI P + D G++ ++ + + + +A G C +C SS + N I +
Sbjct: 180 DEQLSALNTMMKEKITPLVAVDSGDVRIVHFEGLTVTIAYSGNCSSCLSSVGSTLNSIGQ 239
Query: 66 QLKMDIHPNLEV 77
+ ++P LE+
Sbjct: 240 LFRAHVYPLLEI 251
>sp|Q10373|NIU2_RHOCA Nitrogen fixation protein nifU 2
pir||S20904 nifU2 protein - Rhodobacter capsulatus
emb|CAA44879.1| (X63196) nifUII [Rhodobacter capsulatus]
Length = 142
Score = 40.8 bits (94), Expect = 0.003
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 16 VIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNV 62
+I ++RP +DGG+IE++G+ + V L G+C C S TL V
Sbjct: 76 LIAEMRPMFQRDGGDIELIGLTGATVQVRLSGSCAGCMMSARTLSTV 122
>ref|NP_296477.1| (NC_002620) NifU-related protein [Chlamydia muridarum]
pir||B81741 NifU-related protein TC0093 [imported] - Chlamydia muridarum
(strain Nigg)
gb|AAF38973.1| (AE002277) NifU-related protein [Chlamydia muridarum]
Length = 260
Score = 39.3 bits (90), Expect = 0.009
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 6 DEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIER 65
DE L ++ EKI P + D G++ ++ + + + +A G C +C S+ + N I +
Sbjct: 180 DEQLSTLNIMMKEKIAPLVAMDEGSVRIVHFEGLTVTIAYSGNCSSCLSAVGSTLNSIGQ 239
Query: 66 QLKMDIHPNLEV 77
+ ++P LE+
Sbjct: 240 LFRAHVYPLLEI 251
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.139 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,558,931
Number of Sequences: 1026957
Number of extensions: 1557312
Number of successful extensions: 4007
Number of sequences better than 1.0e-02: 75
Number of HSP's better than 0.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3927
Number of HSP's gapped (non-prelim): 78
length of query: 89
length of database: 324,149,939
effective HSP length: 65
effective length of query: 24
effective length of database: 257,397,734
effective search space: 6177545616
effective search space used: 6177545616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)