BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646102|ref|NP_208284.1| hypothetical protein
[Helicobacter pylori 26695]
(203 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208284.1| (NC_000915) hypothetical protein [Helicoba... 399 e-111
ref|NP_224104.1| (NC_000921) putative [Helicobacter pylori ... 387 e-107
ref|NP_282768.1| (NC_002163) hypothetical protein Cj1640 [C... 70 1e-11
emb|CAA76496.1| (Y16882) hypothetical protein [Campylobacte... 52 5e-06
>ref|NP_208284.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64706 troponin C - Helicobacter pylori (strain 26695)
gb|AAD08543.1| (AE000648) H. pylori predicted coding region HP1493 [Helicobacter
pylori 26695]
Length = 203
Score = 399 bits (1026), Expect = e-111
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MQKFDYEFKKRALIKDGFLAFKQAHYAEALRLFSEVLFLDKDNQKAKVGALLSDIAKDFP 60
MQKFDYEFKKRALIKDGFLAFKQAHYAEALRLFSEVLFLDKDNQKAKVGALLSDIAKDFP
Sbjct: 1 MQKFDYEFKKRALIKDGFLAFKQAHYAEALRLFSEVLFLDKDNQKAKVGALLSDIAKDFP 60
Query: 61 KEAHSFYELYQSLIAMQKRSLKNQAEEQIINLIASFDEGLNQMAEKIDVQISQKSEELNG 120
KEAHSFYELYQSLIAMQKRSLKNQAEEQIINLIASFDEGLNQMAEKIDVQISQKSEELNG
Sbjct: 61 KEAHSFYELYQSLIAMQKRSLKNQAEEQIINLIASFDEGLNQMAEKIDVQISQKSEELNG 120
Query: 121 ILYADFKRLSLERGFKEAFEDLMFSSRVIFDNKEDFYEFLKELNHYGYYELAINYIENMH 180
ILYADFKRLSLERGFKEAFEDLMFSSRVIFDNKEDFYEFLKELNHYGYYELAINYIENMH
Sbjct: 121 ILYADFKRLSLERGFKEAFEDLMFSSRVIFDNKEDFYEFLKELNHYGYYELAINYIENMH 180
Query: 181 EDSFIYDEFLRSLLEDALKSNKA 203
EDSFIYDEFLRSLLEDALKSNKA
Sbjct: 181 EDSFIYDEFLRSLLEDALKSNKA 203
>ref|NP_224104.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71812 hypothetical protein jhp1386 - Helicobacter pylori (strain J99)
gb|AAD06967.1| (AE001561) putative [Helicobacter pylori J99]
Length = 203
Score = 387 bits (993), Expect = e-107
Identities = 196/203 (96%), Positives = 198/203 (96%)
Query: 1 MQKFDYEFKKRALIKDGFLAFKQAHYAEALRLFSEVLFLDKDNQKAKVGALLSDIAKDFP 60
MQKFDYEFKKRALIK+GFLAFKQAHYAEALRLFSEVLFLDKDNQKAKVGALLSDIAKDFP
Sbjct: 1 MQKFDYEFKKRALIKEGFLAFKQAHYAEALRLFSEVLFLDKDNQKAKVGALLSDIAKDFP 60
Query: 61 KEAHSFYELYQSLIAMQKRSLKNQAEEQIINLIASFDEGLNQMAEKIDVQISQKSEELNG 120
KEAHSFYELYQSLIAMQKRSLKNQAEEQI LIASFDEGLNQMAEKID QISQK EELNG
Sbjct: 61 KEAHSFYELYQSLIAMQKRSLKNQAEEQITALIASFDEGLNQMAEKIDAQISQKGEELNG 120
Query: 121 ILYADFKRLSLERGFKEAFEDLMFSSRVIFDNKEDFYEFLKELNHYGYYELAINYIENMH 180
ILYADFKRLSLERGFKEAF DLMFSSRVIFDNKEDFYEFLKELNHYGYYELA+NYIENMH
Sbjct: 121 ILYADFKRLSLERGFKEAFGDLMFSSRVIFDNKEDFYEFLKELNHYGYYELAVNYIENMH 180
Query: 181 EDSFIYDEFLRSLLEDALKSNKA 203
EDSFIYDEFLRSLLEDALKSNKA
Sbjct: 181 EDSFIYDEFLRSLLEDALKSNKA 203
>ref|NP_282768.1| (NC_002163) hypothetical protein Cj1640 [Campylobacter jejuni]
pir||F81260 hypothetical protein Cj1640 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73628.1| (AL139079) hypothetical protein Cj1640 [Campylobacter jejuni]
Length = 183
Score = 70.5 bits (171), Expect = 1e-11
Identities = 43/161 (26%), Positives = 88/161 (53%), Gaps = 12/161 (7%)
Query: 31 RLFSEVLFLDKDNQKAKVGALLSDIAKDFPKEAHSFYELYQSLIAMQKRSLKNQAEEQII 90
+++ + + + N++ L D+A PKEA ++ Y I K S ++ E+I+
Sbjct: 21 KMYFSMAYEKRKNKRLLNFICLCDLALKSPKEASLLFDFY---IEHYKISSIDKDLEEIL 77
Query: 91 NLIASFDEGLNQMAEKIDVQISQKSEELNGILYADFKRLSLERGFKEAFEDLMFSSRVIF 150
+ I F + N+ + E+ + + Y DF + E GF+++FE+++ S++++
Sbjct: 78 STI-EFKKQENKQENEF--------EDGHALNYQDFLKSEEELGFQKSFENIINSTKLVI 128
Query: 151 DNKEDFYEFLKELNHYGYYELAINYIENMHEDSFIYDEFLR 191
DN++DF +FL++L GY ++ +NYIEN+ + D F++
Sbjct: 129 DNRDDFLDFLEKLLDNGYKDMTLNYIENVMPHFWANDRFIK 169
>emb|CAA76496.1| (Y16882) hypothetical protein [Campylobacter jejuni]
Length = 151
Score = 51.6 bits (122), Expect = 5e-06
Identities = 39/160 (24%), Positives = 79/160 (49%), Gaps = 12/160 (7%)
Query: 32 LFSEVLFLDKDNQKAKVGALLSDIAKDFPKEAHSFYELYQSLIAMQKRSLKNQAEEQIIN 91
++ + + + N++ L D+A PKEA Y I K S ++ E+I++
Sbjct: 1 MYFSMAYEKRKNKRLLNFICLCDLALKSPKEASLLLHFY---IEHYKISSIDKDLEEILS 57
Query: 92 LIASFDEGLNQMAEKIDVQISQKSEELNGILYADFKRLSLERGFKEAFEDLMFSSRVIFD 151
I F + N+ + E+ + + Y DF + E GF+++FE ++ S+++ D
Sbjct: 58 TI-EFKKQENKQENEF--------EDGHALNYQDFLKSEEELGFQKSFEYIINSTKLAID 108
Query: 152 NKEDFYEFLKELNHYGYYELAINYIENMHEDSFIYDEFLR 191
++DF +F +L GY ++ +YI+N+ + D F++
Sbjct: 109 FRDDFLDFWAKLLDNGYKDMTSHYIDNVMPHFWANDCFIK 148
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.137 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,252,433
Number of Sequences: 1026957
Number of extensions: 4458181
Number of successful extensions: 14845
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14839
Number of HSP's gapped (non-prelim): 5
length of query: 203
length of database: 324,149,939
effective HSP length: 115
effective length of query: 88
effective length of database: 206,049,884
effective search space: 18132389792
effective search space used: 18132389792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 94 (40.8 bits)